1af0996ceSBarry Smith #include <petsc/private/viewerimpl.h> /*I "petscviewer.h" I*/ 25c6c1daeSBarry Smith 35c6c1daeSBarry Smith typedef struct { 45c6c1daeSBarry Smith int fdes; /* file descriptor, ignored if using MPI IO */ 55c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 6bc196f7cSDave May PetscBool usempiio; 75c6c1daeSBarry Smith MPI_File mfdes; /* ignored unless using MPI IO */ 8e8a65b7dSLisandro Dalcin MPI_File mfsub; /* subviewer support */ 95c6c1daeSBarry Smith MPI_Offset moff; 105c6c1daeSBarry Smith #endif 11cc843e7aSLisandro Dalcin char *filename; /* file name */ 12cc843e7aSLisandro Dalcin PetscFileMode filemode; /* read/write/append mode */ 135c6c1daeSBarry Smith FILE *fdes_info; /* optional file containing info on binary file*/ 145c6c1daeSBarry Smith PetscBool storecompressed; /* gzip the write binary file when closing it*/ 15f90597f1SStefano Zampini char *ogzfilename; /* gzip can be run after the filename has been updated */ 165c6c1daeSBarry Smith PetscBool skipinfo; /* Don't create info file for writing; don't use for reading */ 175c6c1daeSBarry Smith PetscBool skipoptions; /* don't use PETSc options database when loading */ 185c6c1daeSBarry Smith PetscInt flowcontrol; /* allow only <flowcontrol> messages outstanding at a time while doing IO */ 195c6c1daeSBarry Smith PetscBool skipheader; /* don't write header, only raw data */ 20a261c58fSBarry Smith PetscBool matlabheaderwritten; /* if format is PETSC_VIEWER_BINARY_MATLAB has the MATLAB .info header been written yet */ 21c98fd787SBarry Smith PetscBool setfromoptionscalled; 225c6c1daeSBarry Smith } PetscViewer_Binary; 235c6c1daeSBarry Smith 249371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryClearFunctionList(PetscViewer v) { 252e956fe4SStefano Zampini PetscFunctionBegin; 262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetFlowControl_C", NULL)); 272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetFlowControl_C", NULL)); 282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipHeader_C", NULL)); 292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipHeader_C", NULL)); 302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipOptions_C", NULL)); 312e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipOptions_C", NULL)); 322e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipInfo_C", NULL)); 332e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipInfo_C", NULL)); 342e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetInfoPointer_C", NULL)); 352e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", NULL)); 362e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", NULL)); 372e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", NULL)); 382e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", NULL)); 392e956fe4SStefano Zampini #if defined(PETSC_HAVE_MPIIO) 402e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetUseMPIIO_C", NULL)); 412e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetUseMPIIO_C", NULL)); 422e956fe4SStefano Zampini #endif 432e956fe4SStefano Zampini PetscFunctionReturn(0); 442e956fe4SStefano Zampini } 452e956fe4SStefano Zampini 46cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 479371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySyncMPIIO(PetscViewer viewer) { 48cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 49cc843e7aSLisandro Dalcin 50cc843e7aSLisandro Dalcin PetscFunctionBegin; 51cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_READ) PetscFunctionReturn(0); 5248a46eb9SPierre Jolivet if (vbinary->mfsub != MPI_FILE_NULL) PetscCallMPI(MPI_File_sync(vbinary->mfsub)); 53cc843e7aSLisandro Dalcin if (vbinary->mfdes != MPI_FILE_NULL) { 549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Barrier(PetscObjectComm((PetscObject)viewer))); 559566063dSJacob Faibussowitsch PetscCallMPI(MPI_File_sync(vbinary->mfdes)); 56cc843e7aSLisandro Dalcin } 57cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 58cc843e7aSLisandro Dalcin } 59cc843e7aSLisandro Dalcin #endif 60cc843e7aSLisandro Dalcin 619371c9d4SSatish Balay static PetscErrorCode PetscViewerGetSubViewer_Binary(PetscViewer viewer, MPI_Comm comm, PetscViewer *outviewer) { 62e8a65b7dSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 63cc843e7aSLisandro Dalcin PetscMPIInt rank; 645c6c1daeSBarry Smith 655c6c1daeSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 67e8a65b7dSLisandro Dalcin 68e8a65b7dSLisandro Dalcin /* Return subviewer in process zero */ 699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 70dd400576SPatrick Sanan if (rank == 0) { 71e5afcf28SBarry Smith PetscMPIInt flg; 72e5afcf28SBarry Smith 739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, comm, &flg)); 74cc73adaaSBarry Smith PetscCheck(flg == MPI_IDENT || flg == MPI_CONGRUENT, PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscViewerGetSubViewer() for PETSCVIEWERBINARY requires a singleton MPI_Comm"); 759566063dSJacob Faibussowitsch PetscCall(PetscViewerCreate(comm, outviewer)); 769566063dSJacob Faibussowitsch PetscCall(PetscViewerSetType(*outviewer, PETSCVIEWERBINARY)); 779566063dSJacob Faibussowitsch PetscCall(PetscMemcpy((*outviewer)->data, vbinary, sizeof(PetscViewer_Binary))); 7812f4c3a9SLisandro Dalcin (*outviewer)->setupcalled = PETSC_TRUE; 7996509d17SLisandro Dalcin } else { 8096509d17SLisandro Dalcin *outviewer = NULL; 8196509d17SLisandro Dalcin } 82e8a65b7dSLisandro Dalcin 83e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 84e8a65b7dSLisandro Dalcin if (vbinary->usempiio && *outviewer) { 85e8a65b7dSLisandro Dalcin PetscViewer_Binary *obinary = (PetscViewer_Binary *)(*outviewer)->data; 86e8a65b7dSLisandro Dalcin /* Parent viewer opens a new MPI file handle on PETSC_COMM_SELF and keeps track of it for future reuse */ 87e8a65b7dSLisandro Dalcin if (vbinary->mfsub == MPI_FILE_NULL) { 88e8a65b7dSLisandro Dalcin int amode; 89cc843e7aSLisandro Dalcin switch (vbinary->filemode) { 90e8a65b7dSLisandro Dalcin case FILE_MODE_READ: amode = MPI_MODE_RDONLY; break; 91e8a65b7dSLisandro Dalcin case FILE_MODE_WRITE: amode = MPI_MODE_WRONLY; break; 9222a8f86cSLisandro Dalcin case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY; break; 9398921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[vbinary->filemode]); 94e8a65b7dSLisandro Dalcin } 959566063dSJacob Faibussowitsch PetscCallMPI(MPI_File_open(PETSC_COMM_SELF, vbinary->filename, amode, MPI_INFO_NULL, &vbinary->mfsub)); 96e8a65b7dSLisandro Dalcin } 97e8a65b7dSLisandro Dalcin /* Subviewer gets the MPI file handle on PETSC_COMM_SELF */ 98e8a65b7dSLisandro Dalcin obinary->mfdes = vbinary->mfsub; 99e8a65b7dSLisandro Dalcin obinary->mfsub = MPI_FILE_NULL; 100e8a65b7dSLisandro Dalcin obinary->moff = vbinary->moff; 101e8a65b7dSLisandro Dalcin } 102e8a65b7dSLisandro Dalcin #endif 103cc843e7aSLisandro Dalcin 104cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 1059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinarySyncMPIIO(viewer)); 106cc843e7aSLisandro Dalcin #endif 1075c6c1daeSBarry Smith PetscFunctionReturn(0); 1085c6c1daeSBarry Smith } 1095c6c1daeSBarry Smith 1109371c9d4SSatish Balay static PetscErrorCode PetscViewerRestoreSubViewer_Binary(PetscViewer viewer, MPI_Comm comm, PetscViewer *outviewer) { 111e8a65b7dSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 112cc843e7aSLisandro Dalcin PetscMPIInt rank; 113e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 114e8a65b7dSLisandro Dalcin MPI_Offset moff = 0; 115e8a65b7dSLisandro Dalcin #endif 1165c6c1daeSBarry Smith 1175c6c1daeSBarry Smith PetscFunctionBegin; 1189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 119c5853193SPierre Jolivet PetscCheck(rank == 0 || !*outviewer, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Subviewer not obtained from viewer"); 120e8a65b7dSLisandro Dalcin 121e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 122e8a65b7dSLisandro Dalcin if (vbinary->usempiio && *outviewer) { 123e8a65b7dSLisandro Dalcin PetscViewer_Binary *obinary = (PetscViewer_Binary *)(*outviewer)->data; 12408401ef6SPierre Jolivet PetscCheck(obinary->mfdes == vbinary->mfsub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Subviewer not obtained from viewer"); 1259566063dSJacob Faibussowitsch if (obinary->mfsub != MPI_FILE_NULL) PetscCallMPI(MPI_File_close(&obinary->mfsub)); 126e8a65b7dSLisandro Dalcin moff = obinary->moff; 127e8a65b7dSLisandro Dalcin } 128e8a65b7dSLisandro Dalcin #endif 129e8a65b7dSLisandro Dalcin 130e8a65b7dSLisandro Dalcin if (*outviewer) { 131e8a65b7dSLisandro Dalcin PetscViewer_Binary *obinary = (PetscViewer_Binary *)(*outviewer)->data; 13208401ef6SPierre Jolivet PetscCheck(obinary->fdes == vbinary->fdes, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Subviewer not obtained from viewer"); 1339566063dSJacob Faibussowitsch PetscCall(PetscFree((*outviewer)->data)); 1342e956fe4SStefano Zampini PetscCall(PetscViewerBinaryClearFunctionList(*outviewer)); 1359566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(outviewer)); 1365c6c1daeSBarry Smith } 137e8a65b7dSLisandro Dalcin 138e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 139e8a65b7dSLisandro Dalcin if (vbinary->usempiio) { 140e8a65b7dSLisandro Dalcin PetscInt64 ioff = (PetscInt64)moff; /* We could use MPI_OFFSET datatype (requires MPI 2.2) */ 1419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&ioff, 1, MPIU_INT64, 0, PetscObjectComm((PetscObject)viewer))); 142e8a65b7dSLisandro Dalcin vbinary->moff = (MPI_Offset)ioff; 143e8a65b7dSLisandro Dalcin } 144e8a65b7dSLisandro Dalcin #endif 145cc843e7aSLisandro Dalcin 146cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 1479566063dSJacob Faibussowitsch PetscCall(PetscViewerBinarySyncMPIIO(viewer)); 148cc843e7aSLisandro Dalcin #endif 1495c6c1daeSBarry Smith PetscFunctionReturn(0); 1505c6c1daeSBarry Smith } 1515c6c1daeSBarry Smith 1525c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1535c6c1daeSBarry Smith /*@C 15485b8072bSPatrick Sanan PetscViewerBinaryGetMPIIOOffset - Gets the current global offset that should be passed to `MPI_File_set_view()` or `MPI_File_{write|read}_at[_all]()` 1555c6c1daeSBarry Smith 1565c6c1daeSBarry Smith Not Collective 1575c6c1daeSBarry Smith 1585c6c1daeSBarry Smith Input Parameter: 15985b8072bSPatrick Sanan . viewer - PetscViewer context, obtained from `PetscViewerBinaryOpen()` 1605c6c1daeSBarry Smith 1615c6c1daeSBarry Smith Output Parameter: 16222a8f86cSLisandro Dalcin . off - the current global offset 1635c6c1daeSBarry Smith 1645c6c1daeSBarry Smith Level: advanced 1655c6c1daeSBarry Smith 166811af0c4SBarry Smith Note: 167811af0c4SBarry Smith Use `PetscViewerBinaryAddMPIIOOffset()` to increase this value after you have written a view. 168811af0c4SBarry Smith 1695c6c1daeSBarry Smith Fortran Note: 1705c6c1daeSBarry Smith This routine is not supported in Fortran. 1715c6c1daeSBarry Smith 172811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryAddMPIIOOffset()` 1735c6c1daeSBarry Smith @*/ 1749371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetMPIIOOffset(PetscViewer viewer, MPI_Offset *off) { 17522a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 1765c6c1daeSBarry Smith 1775c6c1daeSBarry Smith PetscFunctionBegin; 17822a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 17922a8f86cSLisandro Dalcin PetscValidPointer(off, 2); 18022a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 1815c6c1daeSBarry Smith *off = vbinary->moff; 1825c6c1daeSBarry Smith PetscFunctionReturn(0); 1835c6c1daeSBarry Smith } 1845c6c1daeSBarry Smith 1855c6c1daeSBarry Smith /*@C 18622a8f86cSLisandro Dalcin PetscViewerBinaryAddMPIIOOffset - Adds to the current global offset 1875c6c1daeSBarry Smith 18822a8f86cSLisandro Dalcin Logically Collective 1895c6c1daeSBarry Smith 1905c6c1daeSBarry Smith Input Parameters: 191811af0c4SBarry Smith + viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 19222a8f86cSLisandro Dalcin - off - the addition to the global offset 1935c6c1daeSBarry Smith 1945c6c1daeSBarry Smith Level: advanced 1955c6c1daeSBarry Smith 196811af0c4SBarry Smith Note: 197811af0c4SBarry Smith Use `PetscViewerBinaryGetMPIIOOffset()` to get the value that you should pass to `MPI_File_set_view()` or `MPI_File_{write|read}_at[_all]()` 198811af0c4SBarry Smith 1995c6c1daeSBarry Smith Fortran Note: 2005c6c1daeSBarry Smith This routine is not supported in Fortran. 2015c6c1daeSBarry Smith 202811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 2035c6c1daeSBarry Smith @*/ 2049371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryAddMPIIOOffset(PetscViewer viewer, MPI_Offset off) { 20522a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 2065c6c1daeSBarry Smith 2075c6c1daeSBarry Smith PetscFunctionBegin; 20822a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 20922a8f86cSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, (PetscInt)off, 2); 21022a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 2115c6c1daeSBarry Smith vbinary->moff += off; 2125c6c1daeSBarry Smith PetscFunctionReturn(0); 2135c6c1daeSBarry Smith } 2145c6c1daeSBarry Smith 2155c6c1daeSBarry Smith /*@C 216811af0c4SBarry Smith PetscViewerBinaryGetMPIIODescriptor - Extracts the MPI IO file descriptor from a `PetscViewer`. 2175c6c1daeSBarry Smith 2185c6c1daeSBarry Smith Not Collective 2195c6c1daeSBarry Smith 2205c6c1daeSBarry Smith Input Parameter: 221811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 2225c6c1daeSBarry Smith 2235c6c1daeSBarry Smith Output Parameter: 2245c6c1daeSBarry Smith . fdes - file descriptor 2255c6c1daeSBarry Smith 2265c6c1daeSBarry Smith Level: advanced 2275c6c1daeSBarry Smith 2285c6c1daeSBarry Smith Fortran Note: 2295c6c1daeSBarry Smith This routine is not supported in Fortran. 2305c6c1daeSBarry Smith 231811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 2325c6c1daeSBarry Smith @*/ 2339371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetMPIIODescriptor(PetscViewer viewer, MPI_File *fdes) { 23422a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 2355c6c1daeSBarry Smith 2365c6c1daeSBarry Smith PetscFunctionBegin; 23722a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 23822a8f86cSLisandro Dalcin PetscValidPointer(fdes, 2); 2399566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 24022a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 2415c6c1daeSBarry Smith *fdes = vbinary->mfdes; 2425c6c1daeSBarry Smith PetscFunctionReturn(0); 2435c6c1daeSBarry Smith } 244cc843e7aSLisandro Dalcin #endif 2455c6c1daeSBarry Smith 246cc843e7aSLisandro Dalcin /*@ 247cc843e7aSLisandro Dalcin PetscViewerBinarySetUseMPIIO - Sets a binary viewer to use MPI-IO for reading/writing. Must be called 248811af0c4SBarry Smith before `PetscViewerFileSetName()` 249cc843e7aSLisandro Dalcin 250811af0c4SBarry Smith Logically Collective on viewer 251cc843e7aSLisandro Dalcin 252cc843e7aSLisandro Dalcin Input Parameters: 253811af0c4SBarry Smith + viewer - the `PetscViewer`; must be a `PETSCVIEWERBINARY` 254811af0c4SBarry Smith - use - `PETSC_TRUE` means MPI-IO will be used 255cc843e7aSLisandro Dalcin 256811af0c4SBarry Smith Options Database Key: 257cc843e7aSLisandro Dalcin -viewer_binary_mpiio : Flag for using MPI-IO 258cc843e7aSLisandro Dalcin 259cc843e7aSLisandro Dalcin Level: advanced 260cc843e7aSLisandro Dalcin 261811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerFileSetMode()`, `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinaryOpen()`, 262db781477SPatrick Sanan `PetscViewerBinaryGetUseMPIIO()` 263cc843e7aSLisandro Dalcin @*/ 2649371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetUseMPIIO(PetscViewer viewer, PetscBool use) { 265a8aae444SDave May PetscFunctionBegin; 266cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 267cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, use, 2); 268cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetUseMPIIO_C", (PetscViewer, PetscBool), (viewer, use)); 269cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 270cc843e7aSLisandro Dalcin } 271cc843e7aSLisandro Dalcin 272cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 2739371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetUseMPIIO_Binary(PetscViewer viewer, PetscBool use) { 274cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 275cc843e7aSLisandro Dalcin PetscFunctionBegin; 276cc73adaaSBarry Smith PetscCheck(!viewer->setupcalled || vbinary->usempiio == use, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Cannot change MPIIO to %s after setup", PetscBools[use]); 277cc843e7aSLisandro Dalcin vbinary->usempiio = use; 278a8aae444SDave May PetscFunctionReturn(0); 279a8aae444SDave May } 280a8aae444SDave May #endif 281a8aae444SDave May 282cc843e7aSLisandro Dalcin /*@ 283bc196f7cSDave May PetscViewerBinaryGetUseMPIIO - Returns PETSC_TRUE if the binary viewer uses MPI-IO. 2845c6c1daeSBarry Smith 2855c6c1daeSBarry Smith Not Collective 2865c6c1daeSBarry Smith 2875c6c1daeSBarry Smith Input Parameter: 288811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()`; must be a `PETSCVIEWERBINARY` 2895c6c1daeSBarry Smith 2905c6c1daeSBarry Smith Output Parameter: 291811af0c4SBarry Smith . use - `PETSC_TRUE` if MPI-IO is being used 2925c6c1daeSBarry Smith 2935c6c1daeSBarry Smith Level: advanced 2945c6c1daeSBarry Smith 295bc196f7cSDave May Note: 296bc196f7cSDave May If MPI-IO is not available, this function will always return PETSC_FALSE 297bc196f7cSDave May 298811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 2995c6c1daeSBarry Smith @*/ 3009371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetUseMPIIO(PetscViewer viewer, PetscBool *use) { 3015c6c1daeSBarry Smith PetscFunctionBegin; 302cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 303cc843e7aSLisandro Dalcin PetscValidBoolPointer(use, 2); 304cc843e7aSLisandro Dalcin *use = PETSC_FALSE; 305cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinaryGetUseMPIIO_C", (PetscViewer, PetscBool *), (viewer, use)); 3065c6c1daeSBarry Smith PetscFunctionReturn(0); 3075c6c1daeSBarry Smith } 3085c6c1daeSBarry Smith 309cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 3109371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetUseMPIIO_Binary(PetscViewer viewer, PetscBool *use) { 3115c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 3125c6c1daeSBarry Smith 3135c6c1daeSBarry Smith PetscFunctionBegin; 314cc843e7aSLisandro Dalcin *use = vbinary->usempiio; 315cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 316cc843e7aSLisandro Dalcin } 317cc843e7aSLisandro Dalcin #endif 318cc843e7aSLisandro Dalcin 319cc843e7aSLisandro Dalcin /*@ 320cc843e7aSLisandro Dalcin PetscViewerBinarySetFlowControl - Sets how many messages are allowed to outstanding at the same time during parallel IO reads/writes 321cc843e7aSLisandro Dalcin 322cc843e7aSLisandro Dalcin Not Collective 323cc843e7aSLisandro Dalcin 324d8d19677SJose E. Roman Input Parameters: 325811af0c4SBarry Smith + viewer - PetscViewer context, obtained from `PetscViewerBinaryOpen()` 326cc843e7aSLisandro Dalcin - fc - the number of messages, defaults to 256 if this function was not called 327cc843e7aSLisandro Dalcin 328cc843e7aSLisandro Dalcin Level: advanced 329cc843e7aSLisandro Dalcin 330811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetFlowControl()` 331cc843e7aSLisandro Dalcin @*/ 3329371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetFlowControl(PetscViewer viewer, PetscInt fc) { 333cc843e7aSLisandro Dalcin PetscFunctionBegin; 334cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 335cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, fc, 2); 336cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetFlowControl_C", (PetscViewer, PetscInt), (viewer, fc)); 3375c6c1daeSBarry Smith PetscFunctionReturn(0); 3385c6c1daeSBarry Smith } 3395c6c1daeSBarry Smith 3409371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetFlowControl_Binary(PetscViewer viewer, PetscInt fc) { 341cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 342cc843e7aSLisandro Dalcin 343cc843e7aSLisandro Dalcin PetscFunctionBegin; 34408401ef6SPierre Jolivet PetscCheck(fc > 1, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_OUTOFRANGE, "Flow control count must be greater than 1, %" PetscInt_FMT " was set", fc); 345cc843e7aSLisandro Dalcin vbinary->flowcontrol = fc; 346cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 347cc843e7aSLisandro Dalcin } 348cc843e7aSLisandro Dalcin 349cc843e7aSLisandro Dalcin /*@ 3505c6c1daeSBarry Smith PetscViewerBinaryGetFlowControl - Returns how many messages are allowed to outstanding at the same time during parallel IO reads/writes 3515c6c1daeSBarry Smith 3525c6c1daeSBarry Smith Not Collective 3535c6c1daeSBarry Smith 3545c6c1daeSBarry Smith Input Parameter: 355811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 3565c6c1daeSBarry Smith 3575c6c1daeSBarry Smith Output Parameter: 3585c6c1daeSBarry Smith . fc - the number of messages 3595c6c1daeSBarry Smith 3605c6c1daeSBarry Smith Level: advanced 3615c6c1daeSBarry Smith 362811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinarySetFlowControl()` 3635c6c1daeSBarry Smith @*/ 3649371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetFlowControl(PetscViewer viewer, PetscInt *fc) { 3655c6c1daeSBarry Smith PetscFunctionBegin; 366cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 367cc843e7aSLisandro Dalcin PetscValidIntPointer(fc, 2); 368cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetFlowControl_C", (PetscViewer, PetscInt *), (viewer, fc)); 3695c6c1daeSBarry Smith PetscFunctionReturn(0); 3705c6c1daeSBarry Smith } 3715c6c1daeSBarry Smith 3729371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetFlowControl_Binary(PetscViewer viewer, PetscInt *fc) { 3735c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 3745c6c1daeSBarry Smith 3755c6c1daeSBarry Smith PetscFunctionBegin; 376cc843e7aSLisandro Dalcin *fc = vbinary->flowcontrol; 3775c6c1daeSBarry Smith PetscFunctionReturn(0); 3785c6c1daeSBarry Smith } 3795c6c1daeSBarry Smith 3805c6c1daeSBarry Smith /*@C 381811af0c4SBarry Smith PetscViewerBinaryGetDescriptor - Extracts the file descriptor from a `PetscViewer` of `PetscViewerType` `PETSCVIEWERBINARY`. 3825c6c1daeSBarry Smith 383811af0c4SBarry Smith Collective on viewer because it may trigger a `PetscViewerSetUp()` call 3845c6c1daeSBarry Smith 3855c6c1daeSBarry Smith Input Parameter: 386811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 3875c6c1daeSBarry Smith 3885c6c1daeSBarry Smith Output Parameter: 3895c6c1daeSBarry Smith . fdes - file descriptor 3905c6c1daeSBarry Smith 3915c6c1daeSBarry Smith Level: advanced 3925c6c1daeSBarry Smith 393811af0c4SBarry Smith Note: 394811af0c4SBarry Smith For writable binary `PetscViewer`s, the descriptor will only be valid for the 395811af0c4SBarry Smith first processor in the communicator that shares the `PetscViewer`. For readable 3965c6c1daeSBarry Smith files it will only be valid on nodes that have the file. If node 0 does not 3975c6c1daeSBarry Smith have the file it generates an error even if another node does have the file. 3985c6c1daeSBarry Smith 3995c6c1daeSBarry Smith Fortran Note: 4005c6c1daeSBarry Smith This routine is not supported in Fortran. 4015c6c1daeSBarry Smith 402811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()` 4035c6c1daeSBarry Smith @*/ 4049371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetDescriptor(PetscViewer viewer, int *fdes) { 40522a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 4065c6c1daeSBarry Smith 4075c6c1daeSBarry Smith PetscFunctionBegin; 40822a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 40922a8f86cSLisandro Dalcin PetscValidPointer(fdes, 2); 4109566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 41122a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 4125c6c1daeSBarry Smith *fdes = vbinary->fdes; 4135c6c1daeSBarry Smith PetscFunctionReturn(0); 4145c6c1daeSBarry Smith } 4155c6c1daeSBarry Smith 4165c6c1daeSBarry Smith /*@ 4175c6c1daeSBarry Smith PetscViewerBinarySkipInfo - Binary file will not have .info file created with it 4185c6c1daeSBarry Smith 4195c6c1daeSBarry Smith Not Collective 4205c6c1daeSBarry Smith 421fd292e60Sprj- Input Parameter: 422811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerCreate()` 4235c6c1daeSBarry Smith 4245c6c1daeSBarry Smith Options Database Key: 42510699b91SBarry Smith . -viewer_binary_skip_info - true indicates do not generate .info file 4265c6c1daeSBarry Smith 4275c6c1daeSBarry Smith Level: advanced 4285c6c1daeSBarry Smith 42995452b02SPatrick Sanan Notes: 430811af0c4SBarry Smith This must be called after `PetscViewerSetType()`. If you use `PetscViewerBinaryOpen()` then 4315c6c1daeSBarry Smith you can only skip the info file with the -viewer_binary_skip_info flag. To use the function you must open the 432811af0c4SBarry Smith viewer with `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinarySkipInfo()`. 4335c6c1daeSBarry Smith 4345c6c1daeSBarry Smith The .info contains meta information about the data in the binary file, for example the block size if it was 4355c6c1daeSBarry Smith set for a vector or matrix. 4365c6c1daeSBarry Smith 437811af0c4SBarry Smith This routine is deprecated, use `PetscViewerBinarySetSkipInfo()` 438811af0c4SBarry Smith 439811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySetSkipOptions()`, 440db781477SPatrick Sanan `PetscViewerBinaryGetSkipOptions()`, `PetscViewerBinaryGetSkipInfo()` 4415c6c1daeSBarry Smith @*/ 4429371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySkipInfo(PetscViewer viewer) { 4435c6c1daeSBarry Smith PetscFunctionBegin; 4449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinarySetSkipInfo(viewer, PETSC_TRUE)); 445807ea322SDave May PetscFunctionReturn(0); 446807ea322SDave May } 447807ea322SDave May 448807ea322SDave May /*@ 449807ea322SDave May PetscViewerBinarySetSkipInfo - Binary file will not have .info file created with it 450807ea322SDave May 451807ea322SDave May Not Collective 452807ea322SDave May 453d8d19677SJose E. Roman Input Parameters: 454cc843e7aSLisandro Dalcin + viewer - PetscViewer context, obtained from PetscViewerCreate() 455cc843e7aSLisandro Dalcin - skip - PETSC_TRUE implies the .info file will not be generated 456807ea322SDave May 457807ea322SDave May Options Database Key: 45810699b91SBarry Smith . -viewer_binary_skip_info - true indicates do not generate .info file 459807ea322SDave May 460807ea322SDave May Level: advanced 461807ea322SDave May 462811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySetSkipOptions()`, 463db781477SPatrick Sanan `PetscViewerBinaryGetSkipOptions()`, `PetscViewerBinaryGetSkipInfo()` 464807ea322SDave May @*/ 4659371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetSkipInfo(PetscViewer viewer, PetscBool skip) { 466807ea322SDave May PetscFunctionBegin; 467cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 468cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, skip, 2); 469cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetSkipInfo_C", (PetscViewer, PetscBool), (viewer, skip)); 470807ea322SDave May PetscFunctionReturn(0); 471807ea322SDave May } 472807ea322SDave May 4739371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetSkipInfo_Binary(PetscViewer viewer, PetscBool skip) { 474807ea322SDave May PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 475807ea322SDave May 476807ea322SDave May PetscFunctionBegin; 477cc843e7aSLisandro Dalcin vbinary->skipinfo = skip; 478807ea322SDave May PetscFunctionReturn(0); 479807ea322SDave May } 480807ea322SDave May 481807ea322SDave May /*@ 482807ea322SDave May PetscViewerBinaryGetSkipInfo - check if viewer wrote a .info file 483807ea322SDave May 484807ea322SDave May Not Collective 485807ea322SDave May 486807ea322SDave May Input Parameter: 487811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 488807ea322SDave May 489807ea322SDave May Output Parameter: 490811af0c4SBarry Smith . skip - `PETSC_TRUE` implies the .info file was not generated 491807ea322SDave May 492807ea322SDave May Level: advanced 493807ea322SDave May 494811af0c4SBarry Smith Note: 495811af0c4SBarry Smith This must be called after `PetscViewerSetType()` 496807ea322SDave May 497811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, 498db781477SPatrick Sanan `PetscViewerBinarySetSkipOptions()`, `PetscViewerBinarySetSkipInfo()` 499807ea322SDave May @*/ 5009371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetSkipInfo(PetscViewer viewer, PetscBool *skip) { 501807ea322SDave May PetscFunctionBegin; 502cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 503cc843e7aSLisandro Dalcin PetscValidBoolPointer(skip, 2); 504cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetSkipInfo_C", (PetscViewer, PetscBool *), (viewer, skip)); 505807ea322SDave May PetscFunctionReturn(0); 506807ea322SDave May } 507807ea322SDave May 5089371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetSkipInfo_Binary(PetscViewer viewer, PetscBool *skip) { 509807ea322SDave May PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 510807ea322SDave May 511807ea322SDave May PetscFunctionBegin; 512cc843e7aSLisandro Dalcin *skip = vbinary->skipinfo; 513807ea322SDave May PetscFunctionReturn(0); 514807ea322SDave May } 515807ea322SDave May 5165c6c1daeSBarry Smith /*@ 5175c6c1daeSBarry Smith PetscViewerBinarySetSkipOptions - do not use the PETSc options database when loading objects 5185c6c1daeSBarry Smith 5195c6c1daeSBarry Smith Not Collective 5205c6c1daeSBarry Smith 5215c6c1daeSBarry Smith Input Parameters: 522811af0c4SBarry Smith + viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 523811af0c4SBarry Smith - skip - `PETSC_TRUE` means do not use the options from the options database 5245c6c1daeSBarry Smith 5255c6c1daeSBarry Smith Options Database Key: 526811af0c4SBarry Smith . -viewer_binary_skip_options <true or false> - true means do not use the options from the options database 5275c6c1daeSBarry Smith 5285c6c1daeSBarry Smith Level: advanced 5295c6c1daeSBarry Smith 530811af0c4SBarry Smith Note: 531811af0c4SBarry Smith This must be called after `PetscViewerSetType()` 5325c6c1daeSBarry Smith 533811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 534db781477SPatrick Sanan `PetscViewerBinaryGetSkipOptions()` 5355c6c1daeSBarry Smith @*/ 5369371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetSkipOptions(PetscViewer viewer, PetscBool skip) { 5375c6c1daeSBarry Smith PetscFunctionBegin; 538cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 539cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, skip, 2); 540cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetSkipOptions_C", (PetscViewer, PetscBool), (viewer, skip)); 541807ea322SDave May PetscFunctionReturn(0); 542807ea322SDave May } 543807ea322SDave May 5449371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetSkipOptions_Binary(PetscViewer viewer, PetscBool skip) { 545cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 546807ea322SDave May 547807ea322SDave May PetscFunctionBegin; 548cc843e7aSLisandro Dalcin vbinary->skipoptions = skip; 5495c6c1daeSBarry Smith PetscFunctionReturn(0); 5505c6c1daeSBarry Smith } 5515c6c1daeSBarry Smith 5525c6c1daeSBarry Smith /*@ 5535c6c1daeSBarry Smith PetscViewerBinaryGetSkipOptions - checks if viewer uses the PETSc options database when loading objects 5545c6c1daeSBarry Smith 5555c6c1daeSBarry Smith Not Collective 5565c6c1daeSBarry Smith 5575c6c1daeSBarry Smith Input Parameter: 558811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 5595c6c1daeSBarry Smith 5605c6c1daeSBarry Smith Output Parameter: 561811af0c4SBarry Smith . skip - `PETSC_TRUE` means do not use 5625c6c1daeSBarry Smith 5635c6c1daeSBarry Smith Level: advanced 5645c6c1daeSBarry Smith 565811af0c4SBarry Smith Note: 566811af0c4SBarry Smith This must be called after `PetscViewerSetType()` 5675c6c1daeSBarry Smith 568811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 569db781477SPatrick Sanan `PetscViewerBinarySetSkipOptions()` 5705c6c1daeSBarry Smith @*/ 5719371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetSkipOptions(PetscViewer viewer, PetscBool *skip) { 5725c6c1daeSBarry Smith PetscFunctionBegin; 573cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 574cc843e7aSLisandro Dalcin PetscValidBoolPointer(skip, 2); 575cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetSkipOptions_C", (PetscViewer, PetscBool *), (viewer, skip)); 5765c6c1daeSBarry Smith PetscFunctionReturn(0); 5775c6c1daeSBarry Smith } 5785c6c1daeSBarry Smith 5799371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetSkipOptions_Binary(PetscViewer viewer, PetscBool *skip) { 580d21b9a37SPierre Jolivet PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 5815c6c1daeSBarry Smith 5825c6c1daeSBarry Smith PetscFunctionBegin; 583cc843e7aSLisandro Dalcin *skip = vbinary->skipoptions; 5845c6c1daeSBarry Smith PetscFunctionReturn(0); 5855c6c1daeSBarry Smith } 5865c6c1daeSBarry Smith 5875c6c1daeSBarry Smith /*@ 5885c6c1daeSBarry Smith PetscViewerBinarySetSkipHeader - do not write a header with size information on output, just raw data 5895c6c1daeSBarry Smith 5905c6c1daeSBarry Smith Not Collective 5915c6c1daeSBarry Smith 5925c6c1daeSBarry Smith Input Parameters: 593811af0c4SBarry Smith + viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 594811af0c4SBarry Smith - skip - `PETSC_TRUE `means do not write header 5955c6c1daeSBarry Smith 5965c6c1daeSBarry Smith Options Database Key: 597811af0c4SBarry Smith . -viewer_binary_skip_header <true or false> - true means do not write header 5985c6c1daeSBarry Smith 5995c6c1daeSBarry Smith Level: advanced 6005c6c1daeSBarry Smith 60195452b02SPatrick Sanan Notes: 602811af0c4SBarry Smith This must be called after `PetscViewerSetType()` 6035c6c1daeSBarry Smith 60410699b91SBarry Smith Is ignored on anything but a binary viewer 6055c6c1daeSBarry Smith 606811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 607db781477SPatrick Sanan `PetscViewerBinaryGetSkipHeader()` 6085c6c1daeSBarry Smith @*/ 6099371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetSkipHeader(PetscViewer viewer, PetscBool skip) { 6105c6c1daeSBarry Smith PetscFunctionBegin; 611cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 612cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, skip, 2); 613cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetSkipHeader_C", (PetscViewer, PetscBool), (viewer, skip)); 6145c6c1daeSBarry Smith PetscFunctionReturn(0); 6155c6c1daeSBarry Smith } 6165c6c1daeSBarry Smith 6179371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetSkipHeader_Binary(PetscViewer viewer, PetscBool skip) { 6185c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 6195c6c1daeSBarry Smith 6205c6c1daeSBarry Smith PetscFunctionBegin; 621cc843e7aSLisandro Dalcin vbinary->skipheader = skip; 6225c6c1daeSBarry Smith PetscFunctionReturn(0); 6235c6c1daeSBarry Smith } 6245c6c1daeSBarry Smith 6255c6c1daeSBarry Smith /*@ 6265c6c1daeSBarry Smith PetscViewerBinaryGetSkipHeader - checks whether to write a header with size information on output, or just raw data 6275c6c1daeSBarry Smith 6285c6c1daeSBarry Smith Not Collective 6295c6c1daeSBarry Smith 6305c6c1daeSBarry Smith Input Parameter: 631811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 6325c6c1daeSBarry Smith 6335c6c1daeSBarry Smith Output Parameter: 634811af0c4SBarry Smith . skip - `PETSC_TRUE` means do not write header 6355c6c1daeSBarry Smith 6365c6c1daeSBarry Smith Level: advanced 6375c6c1daeSBarry Smith 63895452b02SPatrick Sanan Notes: 63995452b02SPatrick Sanan This must be called after PetscViewerSetType() 6405c6c1daeSBarry Smith 641811af0c4SBarry Smith Returns `PETSC_FALSE` for `PETSCSOCKETVIEWER`, you cannot skip the header for it. 6425c6c1daeSBarry Smith 643811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 644db781477SPatrick Sanan `PetscViewerBinarySetSkipHeader()` 6455c6c1daeSBarry Smith @*/ 6469371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetSkipHeader(PetscViewer viewer, PetscBool *skip) { 6475c6c1daeSBarry Smith PetscFunctionBegin; 648cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 649cc843e7aSLisandro Dalcin PetscValidBoolPointer(skip, 2); 650cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetSkipHeader_C", (PetscViewer, PetscBool *), (viewer, skip)); 6515c6c1daeSBarry Smith PetscFunctionReturn(0); 6525c6c1daeSBarry Smith } 6535c6c1daeSBarry Smith 6549371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetSkipHeader_Binary(PetscViewer viewer, PetscBool *skip) { 655f3b211e4SSatish Balay PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 6565c6c1daeSBarry Smith 6575c6c1daeSBarry Smith PetscFunctionBegin; 658cc843e7aSLisandro Dalcin *skip = vbinary->skipheader; 6595c6c1daeSBarry Smith PetscFunctionReturn(0); 6605c6c1daeSBarry Smith } 6615c6c1daeSBarry Smith 6625c6c1daeSBarry Smith /*@C 6635c6c1daeSBarry Smith PetscViewerBinaryGetInfoPointer - Extracts the file pointer for the ASCII 6645c6c1daeSBarry Smith info file associated with a binary file. 6655c6c1daeSBarry Smith 6665c6c1daeSBarry Smith Not Collective 6675c6c1daeSBarry Smith 6685c6c1daeSBarry Smith Input Parameter: 669811af0c4SBarry Smith . viewer - `PetscViewer` context, obtained from `PetscViewerBinaryOpen()` 6705c6c1daeSBarry Smith 6715c6c1daeSBarry Smith Output Parameter: 6720298fd71SBarry Smith . file - file pointer Always returns NULL if not a binary viewer 6735c6c1daeSBarry Smith 6745c6c1daeSBarry Smith Level: advanced 6755c6c1daeSBarry Smith 676811af0c4SBarry Smith Note: 677811af0c4SBarry Smith For writable binary `PetscViewer`s, the file pointer will only be valid for the 678811af0c4SBarry Smith first processor in the communicator that shares the `PetscViewer`. 6795c6c1daeSBarry Smith 6805c6c1daeSBarry Smith Fortran Note: 6815c6c1daeSBarry Smith This routine is not supported in Fortran. 6825c6c1daeSBarry Smith 683811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()` 6845c6c1daeSBarry Smith @*/ 6859371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetInfoPointer(PetscViewer viewer, FILE **file) { 6865c6c1daeSBarry Smith PetscFunctionBegin; 687cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 688cc843e7aSLisandro Dalcin PetscValidPointer(file, 2); 6890298fd71SBarry Smith *file = NULL; 690cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinaryGetInfoPointer_C", (PetscViewer, FILE **), (viewer, file)); 6915c6c1daeSBarry Smith PetscFunctionReturn(0); 6925c6c1daeSBarry Smith } 6935c6c1daeSBarry Smith 6949371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetInfoPointer_Binary(PetscViewer viewer, FILE **file) { 695cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 6965c6c1daeSBarry Smith 6975c6c1daeSBarry Smith PetscFunctionBegin; 6989566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 699cc843e7aSLisandro Dalcin *file = vbinary->fdes_info; 700cc843e7aSLisandro Dalcin if (viewer->format == PETSC_VIEWER_BINARY_MATLAB && !vbinary->matlabheaderwritten) { 7015c6c1daeSBarry Smith if (vbinary->fdes_info) { 702cc843e7aSLisandro Dalcin FILE *info = vbinary->fdes_info; 7039566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7049566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#$$ Set.filename = '%s';\n", vbinary->filename)); 7059566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#$$ fd = PetscOpenFile(Set.filename);\n")); 7069566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 707cc843e7aSLisandro Dalcin } 708cc843e7aSLisandro Dalcin vbinary->matlabheaderwritten = PETSC_TRUE; 7095c6c1daeSBarry Smith } 7105c6c1daeSBarry Smith PetscFunctionReturn(0); 7115c6c1daeSBarry Smith } 7125c6c1daeSBarry Smith 713e0385b85SDave May #if defined(PETSC_HAVE_MPIIO) 7149371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_BinaryMPIIO(PetscViewer v) { 715e0385b85SDave May PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 716e0385b85SDave May 717e0385b85SDave May PetscFunctionBegin; 71848a46eb9SPierre Jolivet if (vbinary->mfdes != MPI_FILE_NULL) PetscCallMPI(MPI_File_close(&vbinary->mfdes)); 71948a46eb9SPierre Jolivet if (vbinary->mfsub != MPI_FILE_NULL) PetscCallMPI(MPI_File_close(&vbinary->mfsub)); 720cc843e7aSLisandro Dalcin vbinary->moff = 0; 721e0385b85SDave May PetscFunctionReturn(0); 722e0385b85SDave May } 723e0385b85SDave May #endif 724e0385b85SDave May 7259371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_BinarySTDIO(PetscViewer v) { 726cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 727cc843e7aSLisandro Dalcin 728cc843e7aSLisandro Dalcin PetscFunctionBegin; 729cc843e7aSLisandro Dalcin if (vbinary->fdes != -1) { 7309566063dSJacob Faibussowitsch PetscCall(PetscBinaryClose(vbinary->fdes)); 731cc843e7aSLisandro Dalcin vbinary->fdes = -1; 732cc843e7aSLisandro Dalcin if (vbinary->storecompressed) { 733cc843e7aSLisandro Dalcin char cmd[8 + PETSC_MAX_PATH_LEN], out[64 + PETSC_MAX_PATH_LEN] = ""; 734cc843e7aSLisandro Dalcin const char *gzfilename = vbinary->ogzfilename ? vbinary->ogzfilename : vbinary->filename; 735cc843e7aSLisandro Dalcin /* compress the file */ 7369566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(cmd, "gzip -f ", sizeof(cmd))); 7379566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(cmd, gzfilename, sizeof(cmd))); 738cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_POPEN) 739cc843e7aSLisandro Dalcin { 740cc843e7aSLisandro Dalcin FILE *fp; 7419566063dSJacob Faibussowitsch PetscCall(PetscPOpen(PETSC_COMM_SELF, NULL, cmd, "r", &fp)); 742cc73adaaSBarry Smith PetscCheck(!fgets(out, (int)(sizeof(out) - 1), fp), PETSC_COMM_SELF, PETSC_ERR_LIB, "Error from command %s\n%s", cmd, out); 7439566063dSJacob Faibussowitsch PetscCall(PetscPClose(PETSC_COMM_SELF, fp)); 744cc843e7aSLisandro Dalcin } 745cc843e7aSLisandro Dalcin #endif 746cc843e7aSLisandro Dalcin } 747cc843e7aSLisandro Dalcin } 7489566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->ogzfilename)); 749cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 750cc843e7aSLisandro Dalcin } 751cc843e7aSLisandro Dalcin 7529371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_BinaryInfo(PetscViewer v) { 753cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 754cc843e7aSLisandro Dalcin 755cc843e7aSLisandro Dalcin PetscFunctionBegin; 756cc843e7aSLisandro Dalcin if (v->format == PETSC_VIEWER_BINARY_MATLAB && vbinary->matlabheaderwritten) { 757cc843e7aSLisandro Dalcin if (vbinary->fdes_info) { 758cc843e7aSLisandro Dalcin FILE *info = vbinary->fdes_info; 7599566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7609566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#$$ close(fd);\n")); 7619566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 762cc843e7aSLisandro Dalcin } 763cc843e7aSLisandro Dalcin } 764cc843e7aSLisandro Dalcin if (vbinary->fdes_info) { 765cc843e7aSLisandro Dalcin FILE *info = vbinary->fdes_info; 766cc843e7aSLisandro Dalcin vbinary->fdes_info = NULL; 767cc73adaaSBarry Smith PetscCheck(!fclose(info), PETSC_COMM_SELF, PETSC_ERR_SYS, "fclose() failed on file"); 768cc843e7aSLisandro Dalcin } 769cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 770cc843e7aSLisandro Dalcin } 771cc843e7aSLisandro Dalcin 7729371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_Binary(PetscViewer v) { 773cc843e7aSLisandro Dalcin PetscFunctionBegin; 774cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 7759566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_BinaryMPIIO(v)); 776cc843e7aSLisandro Dalcin #endif 7779566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_BinarySTDIO(v)); 7789566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_BinaryInfo(v)); 779cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 780cc843e7aSLisandro Dalcin } 781cc843e7aSLisandro Dalcin 7829371c9d4SSatish Balay static PetscErrorCode PetscViewerDestroy_Binary(PetscViewer v) { 7835c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 7845c6c1daeSBarry Smith 7855c6c1daeSBarry Smith PetscFunctionBegin; 7869566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_Binary(v)); 7879566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->filename)); 7889566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary)); 7892e956fe4SStefano Zampini PetscCall(PetscViewerBinaryClearFunctionList(v)); 790e0385b85SDave May PetscFunctionReturn(0); 791e0385b85SDave May } 7925c6c1daeSBarry Smith 7935c6c1daeSBarry Smith /*@C 7945c6c1daeSBarry Smith PetscViewerBinaryOpen - Opens a file for binary input/output. 7955c6c1daeSBarry Smith 796d083f849SBarry Smith Collective 7975c6c1daeSBarry Smith 7985c6c1daeSBarry Smith Input Parameters: 7995c6c1daeSBarry Smith + comm - MPI communicator 8005c6c1daeSBarry Smith . name - name of file 801cc843e7aSLisandro Dalcin - mode - open mode of file 8025c6c1daeSBarry Smith $ FILE_MODE_WRITE - create new file for binary output 8035c6c1daeSBarry Smith $ FILE_MODE_READ - open existing file for binary input 8045c6c1daeSBarry Smith $ FILE_MODE_APPEND - open existing file for binary output 8055c6c1daeSBarry Smith 8065c6c1daeSBarry Smith Output Parameter: 807cc843e7aSLisandro Dalcin . viewer - PetscViewer for binary input/output to use with the specified file 8085c6c1daeSBarry Smith 8095c6c1daeSBarry Smith Options Database Keys: 810811af0c4SBarry Smith + -viewer_binary_filename <name> - name of file to use 811811af0c4SBarry Smith . -viewer_binary_skip_info - true to skip opening an info file 812811af0c4SBarry Smith . -viewer_binary_skip_options - true to not use options database while creating viewer 813811af0c4SBarry Smith . -viewer_binary_skip_header - true to skip output object headers to the file 814811af0c4SBarry Smith - -viewer_binary_mpiio - true to use MPI-IO for input and output to the file (more scalable for large problems) 8155c6c1daeSBarry Smith 8165c6c1daeSBarry Smith Level: beginner 8175c6c1daeSBarry Smith 8185c6c1daeSBarry Smith Note: 819811af0c4SBarry Smith This `PetscViewer` should be destroyed with `PetscViewerDestroy()`. 8205c6c1daeSBarry Smith 8215c6c1daeSBarry Smith For reading files, the filename may begin with ftp:// or http:// and/or 8225c6c1daeSBarry Smith end with .gz; in this case file is brought over and uncompressed. 8235c6c1daeSBarry Smith 8245c6c1daeSBarry Smith For creating files, if the file name ends with .gz it is automatically 8255c6c1daeSBarry Smith compressed when closed. 8265c6c1daeSBarry Smith 827811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 828db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 829db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()`, `PetscViewerBinarySetUseMPIIO()`, 830db781477SPatrick Sanan `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 8315c6c1daeSBarry Smith @*/ 8329371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryOpen(MPI_Comm comm, const char name[], PetscFileMode mode, PetscViewer *viewer) { 8335c6c1daeSBarry Smith PetscFunctionBegin; 8349566063dSJacob Faibussowitsch PetscCall(PetscViewerCreate(comm, viewer)); 8359566063dSJacob Faibussowitsch PetscCall(PetscViewerSetType(*viewer, PETSCVIEWERBINARY)); 8369566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetMode(*viewer, mode)); 8379566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetName(*viewer, name)); 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerSetFromOptions(*viewer)); 8395c6c1daeSBarry Smith PetscFunctionReturn(0); 8405c6c1daeSBarry Smith } 8415c6c1daeSBarry Smith 8425c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 8439371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryWriteReadMPIIO(PetscViewer viewer, void *data, PetscInt num, PetscInt *count, PetscDataType dtype, PetscBool write) { 84422a8f86cSLisandro Dalcin MPI_Comm comm = PetscObjectComm((PetscObject)viewer); 8455c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 84622a8f86cSLisandro Dalcin MPI_File mfdes = vbinary->mfdes; 8475c6c1daeSBarry Smith MPI_Datatype mdtype; 84869e10bbaSLisandro Dalcin PetscMPIInt rank, cnt; 8495c6c1daeSBarry Smith MPI_Status status; 8505c6c1daeSBarry Smith MPI_Aint ul, dsize; 8515c6c1daeSBarry Smith 8525c6c1daeSBarry Smith PetscFunctionBegin; 8539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8549566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(num, &cnt)); 8559566063dSJacob Faibussowitsch PetscCall(PetscDataTypeToMPIDataType(dtype, &mdtype)); 8565c6c1daeSBarry Smith if (write) { 85748a46eb9SPierre Jolivet if (rank == 0) PetscCall(MPIU_File_write_at(mfdes, vbinary->moff, data, cnt, mdtype, &status)); 8585c6c1daeSBarry Smith } else { 859dd400576SPatrick Sanan if (rank == 0) { 8609566063dSJacob Faibussowitsch PetscCall(MPIU_File_read_at(mfdes, vbinary->moff, data, cnt, mdtype, &status)); 8619566063dSJacob Faibussowitsch if (cnt > 0) PetscCallMPI(MPI_Get_count(&status, mdtype, &cnt)); 8625c6c1daeSBarry Smith } 8639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&cnt, 1, MPI_INT, 0, comm)); 8649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(data, cnt, mdtype, 0, comm)); 86569e10bbaSLisandro Dalcin } 8669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_get_extent(mdtype, &ul, &dsize)); 8675c6c1daeSBarry Smith vbinary->moff += dsize * cnt; 8689860990eSLisandro Dalcin if (count) *count = cnt; 8695c6c1daeSBarry Smith PetscFunctionReturn(0); 8705c6c1daeSBarry Smith } 8715c6c1daeSBarry Smith #endif 8725c6c1daeSBarry Smith 8735c6c1daeSBarry Smith /*@C 8745c6c1daeSBarry Smith PetscViewerBinaryRead - Reads from a binary file, all processors get the same result 8755c6c1daeSBarry Smith 876d083f849SBarry Smith Collective 8775c6c1daeSBarry Smith 8785c6c1daeSBarry Smith Input Parameters: 8795c6c1daeSBarry Smith + viewer - the binary viewer 880907376e6SBarry Smith . data - location of the data to be written 881060da220SMatthew G. Knepley . num - number of items of data to read 882907376e6SBarry Smith - dtype - type of data to read 8835c6c1daeSBarry Smith 884f8e4bde8SMatthew G. Knepley Output Parameters: 8855972f5f3SLisandro Dalcin . count - number of items of data actually read, or NULL. 886f8e4bde8SMatthew G. Knepley 8875c6c1daeSBarry Smith Level: beginner 8885c6c1daeSBarry Smith 889811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 890db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 891db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 8925c6c1daeSBarry Smith @*/ 8939371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryRead(PetscViewer viewer, void *data, PetscInt num, PetscInt *count, PetscDataType dtype) { 89422a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 8955c6c1daeSBarry Smith 89622a8f86cSLisandro Dalcin PetscFunctionBegin; 89722a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 89822a8f86cSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, num, 3); 8999566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 90022a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 9015c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 902bc196f7cSDave May if (vbinary->usempiio) { 9039566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadMPIIO(viewer, data, num, count, dtype, PETSC_FALSE)); 9045c6c1daeSBarry Smith } else { 9055c6c1daeSBarry Smith #endif 9069566063dSJacob Faibussowitsch PetscCall(PetscBinarySynchronizedRead(PetscObjectComm((PetscObject)viewer), vbinary->fdes, data, num, count, dtype)); 9075c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 9085c6c1daeSBarry Smith } 9095c6c1daeSBarry Smith #endif 9105c6c1daeSBarry Smith PetscFunctionReturn(0); 9115c6c1daeSBarry Smith } 9125c6c1daeSBarry Smith 9135c6c1daeSBarry Smith /*@C 914811af0c4SBarry Smith PetscViewerBinaryWrite - writes to a binary file, only from the first MPI rank 9155c6c1daeSBarry Smith 916d083f849SBarry Smith Collective 9175c6c1daeSBarry Smith 9185c6c1daeSBarry Smith Input Parameters: 9195c6c1daeSBarry Smith + viewer - the binary viewer 9205c6c1daeSBarry Smith . data - location of data 9215824c9d0SPatrick Sanan . count - number of items of data to write 922f253e43cSLisandro Dalcin - dtype - type of data to write 9235c6c1daeSBarry Smith 9245c6c1daeSBarry Smith Level: beginner 9255c6c1daeSBarry Smith 926811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 927db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, `PetscDataType` 928db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 9295c6c1daeSBarry Smith @*/ 9309371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryWrite(PetscViewer viewer, const void *data, PetscInt count, PetscDataType dtype) { 93122a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 9325c6c1daeSBarry Smith 9335c6c1daeSBarry Smith PetscFunctionBegin; 93422a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 93522a8f86cSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, count, 3); 9369566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 93722a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 9385c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 939bc196f7cSDave May if (vbinary->usempiio) { 9409566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadMPIIO(viewer, (void *)data, count, NULL, dtype, PETSC_TRUE)); 9415c6c1daeSBarry Smith } else { 9425c6c1daeSBarry Smith #endif 9439566063dSJacob Faibussowitsch PetscCall(PetscBinarySynchronizedWrite(PetscObjectComm((PetscObject)viewer), vbinary->fdes, data, count, dtype)); 9445c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 9455c6c1daeSBarry Smith } 9465c6c1daeSBarry Smith #endif 9475c6c1daeSBarry Smith PetscFunctionReturn(0); 9485c6c1daeSBarry Smith } 9495c6c1daeSBarry Smith 9509371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryWriteReadAll(PetscViewer viewer, PetscBool write, void *data, PetscInt count, PetscInt start, PetscInt total, PetscDataType dtype) { 9515972f5f3SLisandro Dalcin MPI_Comm comm = PetscObjectComm((PetscObject)viewer); 9525972f5f3SLisandro Dalcin PetscMPIInt size, rank; 9535972f5f3SLisandro Dalcin MPI_Datatype mdtype; 954ec4bef21SJose E. Roman PETSC_UNUSED MPI_Aint lb; 955ec4bef21SJose E. Roman MPI_Aint dsize; 9565972f5f3SLisandro Dalcin PetscBool useMPIIO; 9575972f5f3SLisandro Dalcin 9585972f5f3SLisandro Dalcin PetscFunctionBegin; 9595972f5f3SLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 960064a246eSJacob Faibussowitsch PetscValidLogicalCollectiveBool(viewer, ((start >= 0) || (start == PETSC_DETERMINE)), 5); 961064a246eSJacob Faibussowitsch PetscValidLogicalCollectiveBool(viewer, ((total >= 0) || (total == PETSC_DETERMINE)), 6); 962064a246eSJacob Faibussowitsch PetscValidLogicalCollectiveInt(viewer, total, 6); 9639566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 9645972f5f3SLisandro Dalcin 9659566063dSJacob Faibussowitsch PetscCall(PetscDataTypeToMPIDataType(dtype, &mdtype)); 9669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_get_extent(mdtype, &lb, &dsize)); 9679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 9689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 9695972f5f3SLisandro Dalcin 9709566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &useMPIIO)); 9715972f5f3SLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 9725972f5f3SLisandro Dalcin if (useMPIIO) { 9735972f5f3SLisandro Dalcin MPI_File mfdes; 9745972f5f3SLisandro Dalcin MPI_Offset off; 9755972f5f3SLisandro Dalcin PetscMPIInt cnt; 9765972f5f3SLisandro Dalcin 9775972f5f3SLisandro Dalcin if (start == PETSC_DETERMINE) { 9789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&count, &start, 1, MPIU_INT, MPI_SUM, comm)); 9795972f5f3SLisandro Dalcin start -= count; 9805972f5f3SLisandro Dalcin } 9815972f5f3SLisandro Dalcin if (total == PETSC_DETERMINE) { 9825972f5f3SLisandro Dalcin total = start + count; 9839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&total, 1, MPIU_INT, size - 1, comm)); 9845972f5f3SLisandro Dalcin } 9859566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(count, &cnt)); 9869566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetMPIIODescriptor(viewer, &mfdes)); 9879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetMPIIOOffset(viewer, &off)); 9885972f5f3SLisandro Dalcin off += (MPI_Offset)(start * dsize); 9895972f5f3SLisandro Dalcin if (write) { 9909566063dSJacob Faibussowitsch PetscCall(MPIU_File_write_at_all(mfdes, off, data, cnt, mdtype, MPI_STATUS_IGNORE)); 9915972f5f3SLisandro Dalcin } else { 9929566063dSJacob Faibussowitsch PetscCall(MPIU_File_read_at_all(mfdes, off, data, cnt, mdtype, MPI_STATUS_IGNORE)); 9935972f5f3SLisandro Dalcin } 9945972f5f3SLisandro Dalcin off = (MPI_Offset)(total * dsize); 9959566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryAddMPIIOOffset(viewer, off)); 9965972f5f3SLisandro Dalcin PetscFunctionReturn(0); 9975972f5f3SLisandro Dalcin } 9985972f5f3SLisandro Dalcin #endif 9995972f5f3SLisandro Dalcin { 10005972f5f3SLisandro Dalcin int fdes; 10015972f5f3SLisandro Dalcin char *workbuf = NULL; 1002dd400576SPatrick Sanan PetscInt tcount = rank == 0 ? 0 : count, maxcount = 0, message_count, flowcontrolcount; 10035972f5f3SLisandro Dalcin PetscMPIInt tag, cnt, maxcnt, scnt = 0, rcnt = 0, j; 10045972f5f3SLisandro Dalcin MPI_Status status; 10055972f5f3SLisandro Dalcin 10069566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tag)); 10079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&tcount, &maxcount, 1, MPIU_INT, MPI_MAX, 0, comm)); 10089566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(maxcount, &maxcnt)); 10099566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(count, &cnt)); 10105972f5f3SLisandro Dalcin 10119566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetDescriptor(viewer, &fdes)); 10129566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlStart(viewer, &message_count, &flowcontrolcount)); 1013dd400576SPatrick Sanan if (rank == 0) { 10149566063dSJacob Faibussowitsch PetscCall(PetscMalloc(maxcnt * dsize, &workbuf)); 10155972f5f3SLisandro Dalcin if (write) { 10169566063dSJacob Faibussowitsch PetscCall(PetscBinaryWrite(fdes, data, cnt, dtype)); 10175972f5f3SLisandro Dalcin } else { 10189566063dSJacob Faibussowitsch PetscCall(PetscBinaryRead(fdes, data, cnt, NULL, dtype)); 10195972f5f3SLisandro Dalcin } 10205972f5f3SLisandro Dalcin for (j = 1; j < size; j++) { 10219566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlStepMain(viewer, j, &message_count, flowcontrolcount)); 10225972f5f3SLisandro Dalcin if (write) { 10239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(workbuf, maxcnt, mdtype, j, tag, comm, &status)); 10249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Get_count(&status, mdtype, &rcnt)); 10259566063dSJacob Faibussowitsch PetscCall(PetscBinaryWrite(fdes, workbuf, rcnt, dtype)); 10265972f5f3SLisandro Dalcin } else { 10279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(&scnt, 1, MPI_INT, j, tag, comm, MPI_STATUS_IGNORE)); 10289566063dSJacob Faibussowitsch PetscCall(PetscBinaryRead(fdes, workbuf, scnt, NULL, dtype)); 10299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(workbuf, scnt, mdtype, j, tag, comm)); 10305972f5f3SLisandro Dalcin } 10315972f5f3SLisandro Dalcin } 10329566063dSJacob Faibussowitsch PetscCall(PetscFree(workbuf)); 10339566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlEndMain(viewer, &message_count)); 10345972f5f3SLisandro Dalcin } else { 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlStepWorker(viewer, rank, &message_count)); 10365972f5f3SLisandro Dalcin if (write) { 10379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(data, cnt, mdtype, 0, tag, comm)); 10385972f5f3SLisandro Dalcin } else { 10399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(&cnt, 1, MPI_INT, 0, tag, comm)); 10409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(data, cnt, mdtype, 0, tag, comm, MPI_STATUS_IGNORE)); 10415972f5f3SLisandro Dalcin } 10429566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlEndWorker(viewer, &message_count)); 10435972f5f3SLisandro Dalcin } 10445972f5f3SLisandro Dalcin } 10455972f5f3SLisandro Dalcin PetscFunctionReturn(0); 10465972f5f3SLisandro Dalcin } 10475972f5f3SLisandro Dalcin 10485972f5f3SLisandro Dalcin /*@C 1049811af0c4SBarry Smith PetscViewerBinaryReadAll - reads from a binary file from all MPI ranks, each rank receives its own portion of the data 10505972f5f3SLisandro Dalcin 10515972f5f3SLisandro Dalcin Collective 10525972f5f3SLisandro Dalcin 10535972f5f3SLisandro Dalcin Input Parameters: 10545972f5f3SLisandro Dalcin + viewer - the binary viewer 10555972f5f3SLisandro Dalcin . data - location of data 10565972f5f3SLisandro Dalcin . count - local number of items of data to read 1057811af0c4SBarry Smith . start - local start, can be `PETSC_DETERMINE` 1058811af0c4SBarry Smith . total - global number of items of data to read, can be `PETSC_DETERMINE` 10595972f5f3SLisandro Dalcin - dtype - type of data to read 10605972f5f3SLisandro Dalcin 10615972f5f3SLisandro Dalcin Level: advanced 10625972f5f3SLisandro Dalcin 1063811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryRead()`, `PetscViewerBinaryWriteAll()` 10645972f5f3SLisandro Dalcin @*/ 10659371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryReadAll(PetscViewer viewer, void *data, PetscInt count, PetscInt start, PetscInt total, PetscDataType dtype) { 10665972f5f3SLisandro Dalcin PetscFunctionBegin; 10679566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadAll(viewer, PETSC_FALSE, data, count, start, total, dtype)); 10685972f5f3SLisandro Dalcin PetscFunctionReturn(0); 10695972f5f3SLisandro Dalcin } 10705972f5f3SLisandro Dalcin 10715972f5f3SLisandro Dalcin /*@C 1072811af0c4SBarry Smith PetscViewerBinaryWriteAll - writes to a binary file from all MPI ranks, each rank writes its own portion of the data 10735972f5f3SLisandro Dalcin 10745972f5f3SLisandro Dalcin Collective 10755972f5f3SLisandro Dalcin 10765972f5f3SLisandro Dalcin Input Parameters: 10775972f5f3SLisandro Dalcin + viewer - the binary viewer 10785972f5f3SLisandro Dalcin . data - location of data 10795972f5f3SLisandro Dalcin . count - local number of items of data to write 1080811af0c4SBarry Smith . start - local start, can be `PETSC_DETERMINE` 1081811af0c4SBarry Smith . total - global number of items of data to write, can be `PETSC_DETERMINE` 10825972f5f3SLisandro Dalcin - dtype - type of data to write 10835972f5f3SLisandro Dalcin 10845972f5f3SLisandro Dalcin Level: advanced 10855972f5f3SLisandro Dalcin 1086811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerBinaryOpen()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryWriteAll()`, `PetscViewerBinaryReadAll()` 10875972f5f3SLisandro Dalcin @*/ 10889371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryWriteAll(PetscViewer viewer, const void *data, PetscInt count, PetscInt start, PetscInt total, PetscDataType dtype) { 10895972f5f3SLisandro Dalcin PetscFunctionBegin; 10909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadAll(viewer, PETSC_TRUE, (void *)data, count, start, total, dtype)); 10915972f5f3SLisandro Dalcin PetscFunctionReturn(0); 10925972f5f3SLisandro Dalcin } 10935972f5f3SLisandro Dalcin 10945c6c1daeSBarry Smith /*@C 1095811af0c4SBarry Smith PetscViewerBinaryWriteStringArray - writes to a binary file, only from the first MPI rank, an array of strings 10965c6c1daeSBarry Smith 1097d083f849SBarry Smith Collective 10985c6c1daeSBarry Smith 10995c6c1daeSBarry Smith Input Parameters: 11005c6c1daeSBarry Smith + viewer - the binary viewer 11015c6c1daeSBarry Smith - data - location of the array of strings 11025c6c1daeSBarry Smith 11035c6c1daeSBarry Smith Level: intermediate 11045c6c1daeSBarry Smith 1105811af0c4SBarry Smith Note: 1106811af0c4SBarry Smith The array of strings must be null terminated 11075c6c1daeSBarry Smith 1108811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 1109db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 1110db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 11115c6c1daeSBarry Smith @*/ 11129371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryWriteStringArray(PetscViewer viewer, const char *const *data) { 11135c6c1daeSBarry Smith PetscInt i, n = 0, *sizes; 1114cc843e7aSLisandro Dalcin size_t len; 11155c6c1daeSBarry Smith 111622a8f86cSLisandro Dalcin PetscFunctionBegin; 11179566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11185c6c1daeSBarry Smith /* count number of strings */ 11199371c9d4SSatish Balay while (data[n++]) 11209371c9d4SSatish Balay ; 11215c6c1daeSBarry Smith n--; 11229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n + 1, &sizes)); 11235c6c1daeSBarry Smith sizes[0] = n; 11245c6c1daeSBarry Smith for (i = 0; i < n; i++) { 11259566063dSJacob Faibussowitsch PetscCall(PetscStrlen(data[i], &len)); 1126cc843e7aSLisandro Dalcin sizes[i + 1] = (PetscInt)len + 1; /* size includes space for the null terminator */ 11275c6c1daeSBarry Smith } 11289566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, sizes, n + 1, PETSC_INT)); 112948a46eb9SPierre Jolivet for (i = 0; i < n; i++) PetscCall(PetscViewerBinaryWrite(viewer, (void *)data[i], sizes[i + 1], PETSC_CHAR)); 11309566063dSJacob Faibussowitsch PetscCall(PetscFree(sizes)); 11315c6c1daeSBarry Smith PetscFunctionReturn(0); 11325c6c1daeSBarry Smith } 11335c6c1daeSBarry Smith 11345c6c1daeSBarry Smith /*@C 1135811af0c4SBarry Smith PetscViewerBinaryReadStringArray - reads a binary file an array of strings to all MPI ranks 11365c6c1daeSBarry Smith 1137d083f849SBarry Smith Collective 11385c6c1daeSBarry Smith 11395c6c1daeSBarry Smith Input Parameter: 11405c6c1daeSBarry Smith . viewer - the binary viewer 11415c6c1daeSBarry Smith 11425c6c1daeSBarry Smith Output Parameter: 11435c6c1daeSBarry Smith . data - location of the array of strings 11445c6c1daeSBarry Smith 11455c6c1daeSBarry Smith Level: intermediate 11465c6c1daeSBarry Smith 1147811af0c4SBarry Smith Note: 1148811af0c4SBarry Smith The array of strings must null terminated 11495c6c1daeSBarry Smith 1150811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 1151db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 1152db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 11535c6c1daeSBarry Smith @*/ 11549371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryReadStringArray(PetscViewer viewer, char ***data) { 1155060da220SMatthew G. Knepley PetscInt i, n, *sizes, N = 0; 11565c6c1daeSBarry Smith 115722a8f86cSLisandro Dalcin PetscFunctionBegin; 11589566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11595c6c1daeSBarry Smith /* count number of strings */ 11609566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &n, 1, NULL, PETSC_INT)); 11619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &sizes)); 11629566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, sizes, n, NULL, PETSC_INT)); 1163a297a907SKarl Rupp for (i = 0; i < n; i++) N += sizes[i]; 11649566063dSJacob Faibussowitsch PetscCall(PetscMalloc((n + 1) * sizeof(char *) + N * sizeof(char), data)); 11655c6c1daeSBarry Smith (*data)[0] = (char *)((*data) + n + 1); 1166a297a907SKarl Rupp for (i = 1; i < n; i++) (*data)[i] = (*data)[i - 1] + sizes[i - 1]; 11679566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, (*data)[0], N, NULL, PETSC_CHAR)); 116802c9f0b5SLisandro Dalcin (*data)[n] = NULL; 11699566063dSJacob Faibussowitsch PetscCall(PetscFree(sizes)); 11705c6c1daeSBarry Smith PetscFunctionReturn(0); 11715c6c1daeSBarry Smith } 11725c6c1daeSBarry Smith 1173cc843e7aSLisandro Dalcin /*@C 1174cc843e7aSLisandro Dalcin PetscViewerFileSetMode - Sets the open mode of file 1175cc843e7aSLisandro Dalcin 1176811af0c4SBarry Smith Logically Collective on viewer 1177cc843e7aSLisandro Dalcin 1178cc843e7aSLisandro Dalcin Input Parameters: 1179811af0c4SBarry Smith + viewer - the `PetscViewer`; must be a a `PETSCVIEWERBINARY`, `PETSCVIEWERMATLAB`, `PETSCVIEWERHDF5`, or `PETSCVIEWERASCII` `PetscViewer` 1180cc843e7aSLisandro Dalcin - mode - open mode of file 1181cc843e7aSLisandro Dalcin $ FILE_MODE_WRITE - create new file for output 1182cc843e7aSLisandro Dalcin $ FILE_MODE_READ - open existing file for input 1183cc843e7aSLisandro Dalcin $ FILE_MODE_APPEND - open existing file for output 1184cc843e7aSLisandro Dalcin 1185cc843e7aSLisandro Dalcin Level: advanced 1186cc843e7aSLisandro Dalcin 1187db781477SPatrick Sanan .seealso: `PetscViewerFileSetMode()`, `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinaryOpen()` 1188cc843e7aSLisandro Dalcin @*/ 11899371c9d4SSatish Balay PetscErrorCode PetscViewerFileSetMode(PetscViewer viewer, PetscFileMode mode) { 1190cc843e7aSLisandro Dalcin PetscFunctionBegin; 1191cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 1192cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveEnum(viewer, mode, 2); 119308401ef6SPierre Jolivet PetscCheck(mode != FILE_MODE_UNDEFINED, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Cannot set FILE_MODE_UNDEFINED"); 1194f7d195e4SLawrence Mitchell PetscCheck(mode >= FILE_MODE_UNDEFINED && mode <= FILE_MODE_APPEND_UPDATE, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_OUTOFRANGE, "Invalid file mode %d", (int)mode); 1195cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerFileSetMode_C", (PetscViewer, PetscFileMode), (viewer, mode)); 1196cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1197cc843e7aSLisandro Dalcin } 1198cc843e7aSLisandro Dalcin 11999371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetMode_Binary(PetscViewer viewer, PetscFileMode mode) { 1200cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1201cc843e7aSLisandro Dalcin 1202cc843e7aSLisandro Dalcin PetscFunctionBegin; 1203cc73adaaSBarry Smith PetscCheck(!viewer->setupcalled || vbinary->filemode == mode, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Cannot change mode to %s after setup", PetscFileModes[mode]); 1204cc843e7aSLisandro Dalcin vbinary->filemode = mode; 1205cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1206cc843e7aSLisandro Dalcin } 1207cc843e7aSLisandro Dalcin 1208cc843e7aSLisandro Dalcin /*@C 1209cc843e7aSLisandro Dalcin PetscViewerFileGetMode - Gets the open mode of file 1210cc843e7aSLisandro Dalcin 1211cc843e7aSLisandro Dalcin Not Collective 1212cc843e7aSLisandro Dalcin 1213cc843e7aSLisandro Dalcin Input Parameter: 1214811af0c4SBarry Smith . viewer - the `PetscViewer`; must be a `PETSCVIEWERBINARY`, `PETSCVIEWERMATLAB`, `PETSCVIEWERHDF5`, or `PETSCVIEWERASCII` `PetscViewer` 1215cc843e7aSLisandro Dalcin 1216cc843e7aSLisandro Dalcin Output Parameter: 1217cc843e7aSLisandro Dalcin . mode - open mode of file 1218cc843e7aSLisandro Dalcin $ FILE_MODE_WRITE - create new file for binary output 1219cc843e7aSLisandro Dalcin $ FILE_MODE_READ - open existing file for binary input 1220cc843e7aSLisandro Dalcin $ FILE_MODE_APPEND - open existing file for binary output 1221cc843e7aSLisandro Dalcin 1222cc843e7aSLisandro Dalcin Level: advanced 1223cc843e7aSLisandro Dalcin 1224db781477SPatrick Sanan .seealso: `PetscViewerFileSetMode()`, `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinaryOpen()` 1225cc843e7aSLisandro Dalcin @*/ 12269371c9d4SSatish Balay PetscErrorCode PetscViewerFileGetMode(PetscViewer viewer, PetscFileMode *mode) { 1227cc843e7aSLisandro Dalcin PetscFunctionBegin; 1228cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 1229cc843e7aSLisandro Dalcin PetscValidPointer(mode, 2); 1230cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerFileGetMode_C", (PetscViewer, PetscFileMode *), (viewer, mode)); 1231cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1232cc843e7aSLisandro Dalcin } 1233cc843e7aSLisandro Dalcin 12349371c9d4SSatish Balay static PetscErrorCode PetscViewerFileGetMode_Binary(PetscViewer viewer, PetscFileMode *mode) { 1235cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1236cc843e7aSLisandro Dalcin 1237cc843e7aSLisandro Dalcin PetscFunctionBegin; 1238cc843e7aSLisandro Dalcin *mode = vbinary->filemode; 1239cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1240cc843e7aSLisandro Dalcin } 1241cc843e7aSLisandro Dalcin 12429371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetName_Binary(PetscViewer viewer, const char name[]) { 1243cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1244cc843e7aSLisandro Dalcin 1245cc843e7aSLisandro Dalcin PetscFunctionBegin; 1246cc843e7aSLisandro Dalcin if (viewer->setupcalled && vbinary->filename) { 1247cc843e7aSLisandro Dalcin /* gzip can be run after the file with the previous filename has been closed */ 12489566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->ogzfilename)); 12499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(vbinary->filename, &vbinary->ogzfilename)); 1250cc843e7aSLisandro Dalcin } 12519566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->filename)); 12529566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &vbinary->filename)); 1253cc843e7aSLisandro Dalcin viewer->setupcalled = PETSC_FALSE; 1254cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1255cc843e7aSLisandro Dalcin } 1256cc843e7aSLisandro Dalcin 12579371c9d4SSatish Balay static PetscErrorCode PetscViewerFileGetName_Binary(PetscViewer viewer, const char **name) { 12585c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 12595c6c1daeSBarry Smith 12605c6c1daeSBarry Smith PetscFunctionBegin; 12615c6c1daeSBarry Smith *name = vbinary->filename; 12625c6c1daeSBarry Smith PetscFunctionReturn(0); 12635c6c1daeSBarry Smith } 12645c6c1daeSBarry Smith 12655c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 12669371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetUp_BinaryMPIIO(PetscViewer viewer) { 12675c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1268e8a65b7dSLisandro Dalcin int amode; 12695c6c1daeSBarry Smith 12705c6c1daeSBarry Smith PetscFunctionBegin; 1271a297a907SKarl Rupp vbinary->storecompressed = PETSC_FALSE; 12725c6c1daeSBarry Smith 1273cc843e7aSLisandro Dalcin vbinary->moff = 0; 1274cc843e7aSLisandro Dalcin switch (vbinary->filemode) { 1275e8a65b7dSLisandro Dalcin case FILE_MODE_READ: amode = MPI_MODE_RDONLY; break; 1276e8a65b7dSLisandro Dalcin case FILE_MODE_WRITE: amode = MPI_MODE_WRONLY | MPI_MODE_CREATE; break; 127722a8f86cSLisandro Dalcin case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY | MPI_MODE_CREATE | MPI_MODE_APPEND; break; 12787e4fd573SVaclav Hapla case FILE_MODE_UNDEFINED: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode() before PetscViewerSetUp()"); 127998921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[vbinary->filemode]); 12805c6c1daeSBarry Smith } 12819566063dSJacob Faibussowitsch PetscCallMPI(MPI_File_open(PetscObjectComm((PetscObject)viewer), vbinary->filename, amode, MPI_INFO_NULL, &vbinary->mfdes)); 128222a8f86cSLisandro Dalcin /* 128322a8f86cSLisandro Dalcin The MPI standard does not have MPI_MODE_TRUNCATE. We emulate this behavior by setting the file size to zero. 128422a8f86cSLisandro Dalcin */ 12859566063dSJacob Faibussowitsch if (vbinary->filemode == FILE_MODE_WRITE) PetscCallMPI(MPI_File_set_size(vbinary->mfdes, 0)); 128622a8f86cSLisandro Dalcin /* 128722a8f86cSLisandro Dalcin Initially, all processes view the file as a linear byte stream. Therefore, for files opened with MPI_MODE_APPEND, 128822a8f86cSLisandro Dalcin MPI_File_get_position[_shared](fh, &offset) returns the absolute byte position at the end of file. 128922a8f86cSLisandro Dalcin Otherwise, we would need to call MPI_File_get_byte_offset(fh, offset, &byte_offset) to convert 129022a8f86cSLisandro Dalcin the offset in etype units to an absolute byte position. 129122a8f86cSLisandro Dalcin */ 12929566063dSJacob Faibussowitsch if (vbinary->filemode == FILE_MODE_APPEND) PetscCallMPI(MPI_File_get_position(vbinary->mfdes, &vbinary->moff)); 1293cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1294cc843e7aSLisandro Dalcin } 1295cc843e7aSLisandro Dalcin #endif 12965c6c1daeSBarry Smith 12979371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetUp_BinarySTDIO(PetscViewer viewer) { 1298cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1299cc843e7aSLisandro Dalcin const char *fname; 1300cc843e7aSLisandro Dalcin char bname[PETSC_MAX_PATH_LEN], *gz; 1301cc843e7aSLisandro Dalcin PetscBool found; 1302cc843e7aSLisandro Dalcin PetscMPIInt rank; 13035c6c1daeSBarry Smith 1304cc843e7aSLisandro Dalcin PetscFunctionBegin; 13059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 13065c6c1daeSBarry Smith 1307cc843e7aSLisandro Dalcin /* if file name ends in .gz strip that off and note user wants file compressed */ 1308cc843e7aSLisandro Dalcin vbinary->storecompressed = PETSC_FALSE; 1309cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_WRITE) { 13109566063dSJacob Faibussowitsch PetscCall(PetscStrstr(vbinary->filename, ".gz", &gz)); 13119371c9d4SSatish Balay if (gz && gz[3] == 0) { 13129371c9d4SSatish Balay *gz = 0; 13139371c9d4SSatish Balay vbinary->storecompressed = PETSC_TRUE; 13149371c9d4SSatish Balay } 1315cc843e7aSLisandro Dalcin } 1316cc843e7aSLisandro Dalcin #if !defined(PETSC_HAVE_POPEN) 131728b400f6SJacob Faibussowitsch PetscCheck(!vbinary->storecompressed, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP_SYS, "Cannot run gzip on this machine"); 1318cc843e7aSLisandro Dalcin #endif 1319cc843e7aSLisandro Dalcin 1320cc843e7aSLisandro Dalcin fname = vbinary->filename; 1321cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_READ) { /* possibly get the file from remote site or compressed file */ 13229566063dSJacob Faibussowitsch PetscCall(PetscFileRetrieve(PetscObjectComm((PetscObject)viewer), fname, bname, PETSC_MAX_PATH_LEN, &found)); 132328b400f6SJacob Faibussowitsch PetscCheck(found, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_OPEN, "Cannot locate file: %s", fname); 1324cc843e7aSLisandro Dalcin fname = bname; 13255c6c1daeSBarry Smith } 13265c6c1daeSBarry Smith 1327cc843e7aSLisandro Dalcin vbinary->fdes = -1; 1328dd400576SPatrick Sanan if (rank == 0) { /* only first processor opens file*/ 1329cc843e7aSLisandro Dalcin PetscFileMode mode = vbinary->filemode; 1330cc843e7aSLisandro Dalcin if (mode == FILE_MODE_APPEND) { 1331cc843e7aSLisandro Dalcin /* check if asked to append to a non-existing file */ 13329566063dSJacob Faibussowitsch PetscCall(PetscTestFile(fname, '\0', &found)); 1333cc843e7aSLisandro Dalcin if (!found) mode = FILE_MODE_WRITE; 1334cc843e7aSLisandro Dalcin } 13359566063dSJacob Faibussowitsch PetscCall(PetscBinaryOpen(fname, mode, &vbinary->fdes)); 1336cc843e7aSLisandro Dalcin } 1337cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1338cc843e7aSLisandro Dalcin } 1339cc843e7aSLisandro Dalcin 13409371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetUp_BinaryInfo(PetscViewer viewer) { 1341cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1342cc843e7aSLisandro Dalcin PetscMPIInt rank; 1343cc843e7aSLisandro Dalcin PetscBool found; 1344cc843e7aSLisandro Dalcin 1345cc843e7aSLisandro Dalcin PetscFunctionBegin; 1346cc843e7aSLisandro Dalcin vbinary->fdes_info = NULL; 13479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 1348dd400576SPatrick Sanan if (!vbinary->skipinfo && (vbinary->filemode == FILE_MODE_READ || rank == 0)) { 1349cc843e7aSLisandro Dalcin char infoname[PETSC_MAX_PATH_LEN], iname[PETSC_MAX_PATH_LEN], *gz; 1350cc843e7aSLisandro Dalcin 13519566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(infoname, vbinary->filename, sizeof(infoname))); 1352cc843e7aSLisandro Dalcin /* remove .gz if it ends file name */ 13539566063dSJacob Faibussowitsch PetscCall(PetscStrstr(infoname, ".gz", &gz)); 1354cc843e7aSLisandro Dalcin if (gz && gz[3] == 0) *gz = 0; 1355cc843e7aSLisandro Dalcin 13569566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(infoname, ".info", sizeof(infoname))); 1357cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_READ) { 13589566063dSJacob Faibussowitsch PetscCall(PetscFixFilename(infoname, iname)); 13599566063dSJacob Faibussowitsch PetscCall(PetscFileRetrieve(PetscObjectComm((PetscObject)viewer), iname, infoname, PETSC_MAX_PATH_LEN, &found)); 13609566063dSJacob Faibussowitsch if (found) PetscCall(PetscOptionsInsertFile(PetscObjectComm((PetscObject)viewer), ((PetscObject)viewer)->options, infoname, PETSC_FALSE)); 1361dd400576SPatrick Sanan } else if (rank == 0) { /* write or append */ 1362cc843e7aSLisandro Dalcin const char *omode = (vbinary->filemode == FILE_MODE_APPEND) ? "a" : "w"; 1363cc843e7aSLisandro Dalcin vbinary->fdes_info = fopen(infoname, omode); 136428b400f6SJacob Faibussowitsch PetscCheck(vbinary->fdes_info, PETSC_COMM_SELF, PETSC_ERR_FILE_OPEN, "Cannot open .info file %s for writing", infoname); 13655c6c1daeSBarry Smith } 13665c6c1daeSBarry Smith } 13675c6c1daeSBarry Smith PetscFunctionReturn(0); 13685c6c1daeSBarry Smith } 13695c6c1daeSBarry Smith 13709371c9d4SSatish Balay static PetscErrorCode PetscViewerSetUp_Binary(PetscViewer viewer) { 13715c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1372cc843e7aSLisandro Dalcin PetscBool usempiio; 1373cc843e7aSLisandro Dalcin 13745c6c1daeSBarry Smith PetscFunctionBegin; 13759566063dSJacob Faibussowitsch if (!vbinary->setfromoptionscalled) PetscCall(PetscViewerSetFromOptions(viewer)); 137628b400f6SJacob Faibussowitsch PetscCheck(vbinary->filename, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call PetscViewerFileSetName()"); 137708401ef6SPierre Jolivet PetscCheck(vbinary->filemode != (PetscFileMode)-1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode()"); 13789566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_Binary(viewer)); 1379cc843e7aSLisandro Dalcin 13809566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &usempiio)); 1381cc843e7aSLisandro Dalcin if (usempiio) { 1382cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 13839566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetUp_BinaryMPIIO(viewer)); 1384cc843e7aSLisandro Dalcin #endif 1385cc843e7aSLisandro Dalcin } else { 13869566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetUp_BinarySTDIO(viewer)); 1387cc843e7aSLisandro Dalcin } 13889566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetUp_BinaryInfo(viewer)); 1389cc843e7aSLisandro Dalcin 13909566063dSJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)viewer, "File: %s", vbinary->filename)); 13915c6c1daeSBarry Smith PetscFunctionReturn(0); 13925c6c1daeSBarry Smith } 13935c6c1daeSBarry Smith 13949371c9d4SSatish Balay static PetscErrorCode PetscViewerView_Binary(PetscViewer v, PetscViewer viewer) { 1395cb6ad94fSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 1396cb6ad94fSLisandro Dalcin const char *fname = vbinary->filename ? vbinary->filename : "not yet set"; 1397cc843e7aSLisandro Dalcin const char *fmode = vbinary->filemode != (PetscFileMode)-1 ? PetscFileModes[vbinary->filemode] : "not yet set"; 1398cb6ad94fSLisandro Dalcin PetscBool usempiio; 13992bf49c77SBarry Smith 14002bf49c77SBarry Smith PetscFunctionBegin; 14019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetUseMPIIO(v, &usempiio)); 14029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Filename: %s\n", fname)); 14039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Mode: %s (%s)\n", fmode, usempiio ? "mpiio" : "stdio")); 14042bf49c77SBarry Smith PetscFunctionReturn(0); 14052bf49c77SBarry Smith } 14062bf49c77SBarry Smith 14079371c9d4SSatish Balay static PetscErrorCode PetscViewerSetFromOptions_Binary(PetscViewer viewer, PetscOptionItems *PetscOptionsObject) { 140822a8f86cSLisandro Dalcin PetscViewer_Binary *binary = (PetscViewer_Binary *)viewer->data; 1409d22fd6bcSDave May char defaultname[PETSC_MAX_PATH_LEN]; 141003a1d59fSDave May PetscBool flg; 1411e0385b85SDave May 141203a1d59fSDave May PetscFunctionBegin; 141322a8f86cSLisandro Dalcin if (viewer->setupcalled) PetscFunctionReturn(0); 1414d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "Binary PetscViewer Options"); 14159566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(defaultname, PETSC_MAX_PATH_LEN - 1, "binaryoutput")); 14169566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-viewer_binary_filename", "Specify filename", "PetscViewerFileSetName", defaultname, defaultname, sizeof(defaultname), &flg)); 14179566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerFileSetName_Binary(viewer, defaultname)); 14189566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_skip_info", "Skip writing/reading .info file", "PetscViewerBinarySetSkipInfo", binary->skipinfo, &binary->skipinfo, NULL)); 14199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_skip_options", "Skip parsing Vec/Mat load options", "PetscViewerBinarySetSkipOptions", binary->skipoptions, &binary->skipoptions, NULL)); 14209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_skip_header", "Skip writing/reading header information", "PetscViewerBinarySetSkipHeader", binary->skipheader, &binary->skipheader, NULL)); 142103a1d59fSDave May #if defined(PETSC_HAVE_MPIIO) 14229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_mpiio", "Use MPI-IO functionality to write/read binary file", "PetscViewerBinarySetUseMPIIO", binary->usempiio, &binary->usempiio, NULL)); 14235972f5f3SLisandro Dalcin #else 14249566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_mpiio", "Use MPI-IO functionality to write/read binary file (NOT AVAILABLE)", "PetscViewerBinarySetUseMPIIO", PETSC_FALSE, NULL, NULL)); 142503a1d59fSDave May #endif 1426d0609cedSBarry Smith PetscOptionsHeadEnd(); 1427bc196f7cSDave May binary->setfromoptionscalled = PETSC_TRUE; 142803a1d59fSDave May PetscFunctionReturn(0); 142903a1d59fSDave May } 143003a1d59fSDave May 14318556b5ebSBarry Smith /*MC 14328556b5ebSBarry Smith PETSCVIEWERBINARY - A viewer that saves to binary files 14338556b5ebSBarry Smith 14341b266c99SBarry Smith Level: beginner 14351b266c99SBarry Smith 1436811af0c4SBarry Smith .seealso: `PetscViewerBinaryOpen()`, `PETSC_VIEWER_STDOUT_()`, `PETSC_VIEWER_STDOUT_SELF`, `PETSC_VIEWER_STDOUT_WORLD`, `PetscViewerCreate()`, `PetscViewerASCIIOpen()`, 1437811af0c4SBarry Smith `PetscViewerMatlabOpen()`, `VecView()`, `DMView()`, `PetscViewerMatlabPutArray()`, `PETSCVIEWERASCII`, `PETSCVIEWERMATLAB`, `PETSCVIEWERDRAW`, `PETSCVIEWERSOCKET` 1438811af0c4SBarry Smith `PetscViewerFileSetName()`, `PetscViewerFileSetMode()`, `PetscViewerFormat`, `PetscViewerType`, `PetscViewerSetType()`, 1439811af0c4SBarry Smith `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()` 14408556b5ebSBarry Smith M*/ 14418556b5ebSBarry Smith 14429371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode PetscViewerCreate_Binary(PetscViewer v) { 14435c6c1daeSBarry Smith PetscViewer_Binary *vbinary; 14445c6c1daeSBarry Smith 14455c6c1daeSBarry Smith PetscFunctionBegin; 1446*4dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&vbinary)); 14475c6c1daeSBarry Smith v->data = (void *)vbinary; 1448cc843e7aSLisandro Dalcin 144903a1d59fSDave May v->ops->setfromoptions = PetscViewerSetFromOptions_Binary; 14505c6c1daeSBarry Smith v->ops->destroy = PetscViewerDestroy_Binary; 14512bf49c77SBarry Smith v->ops->view = PetscViewerView_Binary; 1452c98fd787SBarry Smith v->ops->setup = PetscViewerSetUp_Binary; 1453cc843e7aSLisandro Dalcin v->ops->flush = NULL; /* Should we support Flush() ? */ 1454cc843e7aSLisandro Dalcin v->ops->getsubviewer = PetscViewerGetSubViewer_Binary; 1455cc843e7aSLisandro Dalcin v->ops->restoresubviewer = PetscViewerRestoreSubViewer_Binary; 1456cc843e7aSLisandro Dalcin v->ops->read = PetscViewerBinaryRead; 1457cc843e7aSLisandro Dalcin 1458cc843e7aSLisandro Dalcin vbinary->fdes = -1; 1459e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 1460cc843e7aSLisandro Dalcin vbinary->usempiio = PETSC_FALSE; 1461e8a65b7dSLisandro Dalcin vbinary->mfdes = MPI_FILE_NULL; 1462e8a65b7dSLisandro Dalcin vbinary->mfsub = MPI_FILE_NULL; 1463e8a65b7dSLisandro Dalcin #endif 1464cc843e7aSLisandro Dalcin vbinary->filename = NULL; 14657e4fd573SVaclav Hapla vbinary->filemode = FILE_MODE_UNDEFINED; 146602c9f0b5SLisandro Dalcin vbinary->fdes_info = NULL; 14675c6c1daeSBarry Smith vbinary->skipinfo = PETSC_FALSE; 14685c6c1daeSBarry Smith vbinary->skipoptions = PETSC_TRUE; 14695c6c1daeSBarry Smith vbinary->skipheader = PETSC_FALSE; 14705c6c1daeSBarry Smith vbinary->storecompressed = PETSC_FALSE; 1471f90597f1SStefano Zampini vbinary->ogzfilename = NULL; 14725c6c1daeSBarry Smith vbinary->flowcontrol = 256; /* seems a good number for Cray XT-5 */ 14735c6c1daeSBarry Smith 1474cc843e7aSLisandro Dalcin vbinary->setfromoptionscalled = PETSC_FALSE; 1475cc843e7aSLisandro Dalcin 14769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetFlowControl_C", PetscViewerBinaryGetFlowControl_Binary)); 14779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetFlowControl_C", PetscViewerBinarySetFlowControl_Binary)); 14789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipHeader_C", PetscViewerBinaryGetSkipHeader_Binary)); 14799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipHeader_C", PetscViewerBinarySetSkipHeader_Binary)); 14809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipOptions_C", PetscViewerBinaryGetSkipOptions_Binary)); 14819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipOptions_C", PetscViewerBinarySetSkipOptions_Binary)); 14829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipInfo_C", PetscViewerBinaryGetSkipInfo_Binary)); 14839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipInfo_C", PetscViewerBinarySetSkipInfo_Binary)); 14849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetInfoPointer_C", PetscViewerBinaryGetInfoPointer_Binary)); 14859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", PetscViewerFileGetName_Binary)); 14869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", PetscViewerFileSetName_Binary)); 14879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", PetscViewerFileGetMode_Binary)); 14889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", PetscViewerFileSetMode_Binary)); 14895c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 14909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetUseMPIIO_C", PetscViewerBinaryGetUseMPIIO_Binary)); 14919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetUseMPIIO_C", PetscViewerBinarySetUseMPIIO_Binary)); 14925c6c1daeSBarry Smith #endif 14935c6c1daeSBarry Smith PetscFunctionReturn(0); 14945c6c1daeSBarry Smith } 14955c6c1daeSBarry Smith 14965c6c1daeSBarry Smith /* ---------------------------------------------------------------------*/ 14975c6c1daeSBarry Smith /* 14985c6c1daeSBarry Smith The variable Petsc_Viewer_Binary_keyval is used to indicate an MPI attribute that 14995c6c1daeSBarry Smith is attached to a communicator, in this case the attribute is a PetscViewer. 15005c6c1daeSBarry Smith */ 1501d4c7638eSBarry Smith PetscMPIInt Petsc_Viewer_Binary_keyval = MPI_KEYVAL_INVALID; 15025c6c1daeSBarry Smith 15035c6c1daeSBarry Smith /*@C 1504811af0c4SBarry Smith PETSC_VIEWER_BINARY_ - Creates a `PETSCVIEWERBINARY` `PetscViewer` shared by all processors 15055c6c1daeSBarry Smith in a communicator. 15065c6c1daeSBarry Smith 1507d083f849SBarry Smith Collective 15085c6c1daeSBarry Smith 15095c6c1daeSBarry Smith Input Parameter: 1510811af0c4SBarry Smith . comm - the MPI communicator to share the `PETSCVIEWERBINARY` 15115c6c1daeSBarry Smith 15125c6c1daeSBarry Smith Level: intermediate 15135c6c1daeSBarry Smith 15145c6c1daeSBarry Smith Options Database Keys: 151510699b91SBarry Smith + -viewer_binary_filename <name> - filename in which to store the binary data, defaults to binaryoutput 151610699b91SBarry Smith . -viewer_binary_skip_info - true means do not create .info file for this viewer 151710699b91SBarry Smith . -viewer_binary_skip_options - true means do not use the options database for this viewer 151810699b91SBarry Smith . -viewer_binary_skip_header - true means do not store the usual header information in the binary file 151910699b91SBarry Smith - -viewer_binary_mpiio - true means use the file via MPI-IO, maybe faster for large files and many MPI ranks 15205c6c1daeSBarry Smith 1521811af0c4SBarry Smith Environmental variable: 152210699b91SBarry Smith - PETSC_VIEWER_BINARY_FILENAME - filename in which to store the binary data, defaults to binaryoutput 15235c6c1daeSBarry Smith 1524811af0c4SBarry Smith Note: 1525811af0c4SBarry Smith Unlike almost all other PETSc routines, `PETSC_VIEWER_BINARY_` does not return 15265c6c1daeSBarry Smith an error code. The binary PetscViewer is usually used in the form 15275c6c1daeSBarry Smith $ XXXView(XXX object,PETSC_VIEWER_BINARY_(comm)); 15285c6c1daeSBarry Smith 1529811af0c4SBarry Smith .seealso: `PETSCVIEWERBINARY`, `PETSC_VIEWER_BINARY_WORLD`, `PETSC_VIEWER_BINARY_SELF`, `PetscViewerBinaryOpen()`, `PetscViewerCreate()`, 1530db781477SPatrick Sanan `PetscViewerDestroy()` 15315c6c1daeSBarry Smith @*/ 15329371c9d4SSatish Balay PetscViewer PETSC_VIEWER_BINARY_(MPI_Comm comm) { 15335c6c1daeSBarry Smith PetscErrorCode ierr; 15345c6c1daeSBarry Smith PetscBool flg; 15355c6c1daeSBarry Smith PetscViewer viewer; 15365c6c1daeSBarry Smith char fname[PETSC_MAX_PATH_LEN]; 15375c6c1daeSBarry Smith MPI_Comm ncomm; 15385c6c1daeSBarry Smith 15395c6c1daeSBarry Smith PetscFunctionBegin; 15409371c9d4SSatish Balay ierr = PetscCommDuplicate(comm, &ncomm, NULL); 15419371c9d4SSatish Balay if (ierr) { 15429371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15439371c9d4SSatish Balay PetscFunctionReturn(NULL); 15449371c9d4SSatish Balay } 15455c6c1daeSBarry Smith if (Petsc_Viewer_Binary_keyval == MPI_KEYVAL_INVALID) { 154602c9f0b5SLisandro Dalcin ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Viewer_Binary_keyval, NULL); 15479371c9d4SSatish Balay if (ierr) { 15489371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15499371c9d4SSatish Balay PetscFunctionReturn(NULL); 15509371c9d4SSatish Balay } 15515c6c1daeSBarry Smith } 155247435625SJed Brown ierr = MPI_Comm_get_attr(ncomm, Petsc_Viewer_Binary_keyval, (void **)&viewer, (int *)&flg); 15539371c9d4SSatish Balay if (ierr) { 15549371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15559371c9d4SSatish Balay PetscFunctionReturn(NULL); 15569371c9d4SSatish Balay } 15575c6c1daeSBarry Smith if (!flg) { /* PetscViewer not yet created */ 15585c6c1daeSBarry Smith ierr = PetscOptionsGetenv(ncomm, "PETSC_VIEWER_BINARY_FILENAME", fname, PETSC_MAX_PATH_LEN, &flg); 15599371c9d4SSatish Balay if (ierr) { 15609371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15619371c9d4SSatish Balay PetscFunctionReturn(NULL); 15629371c9d4SSatish Balay } 15635c6c1daeSBarry Smith if (!flg) { 15645c6c1daeSBarry Smith ierr = PetscStrcpy(fname, "binaryoutput"); 15659371c9d4SSatish Balay if (ierr) { 15669371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15679371c9d4SSatish Balay PetscFunctionReturn(NULL); 15689371c9d4SSatish Balay } 15695c6c1daeSBarry Smith } 15705c6c1daeSBarry Smith ierr = PetscViewerBinaryOpen(ncomm, fname, FILE_MODE_WRITE, &viewer); 15719371c9d4SSatish Balay if (ierr) { 15729371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15739371c9d4SSatish Balay PetscFunctionReturn(NULL); 15749371c9d4SSatish Balay } 15755c6c1daeSBarry Smith ierr = PetscObjectRegisterDestroy((PetscObject)viewer); 15769371c9d4SSatish Balay if (ierr) { 15779371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15789371c9d4SSatish Balay PetscFunctionReturn(NULL); 15799371c9d4SSatish Balay } 158047435625SJed Brown ierr = MPI_Comm_set_attr(ncomm, Petsc_Viewer_Binary_keyval, (void *)viewer); 15819371c9d4SSatish Balay if (ierr) { 15829371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15839371c9d4SSatish Balay PetscFunctionReturn(NULL); 15849371c9d4SSatish Balay } 15855c6c1daeSBarry Smith } 15865c6c1daeSBarry Smith ierr = PetscCommDestroy(&ncomm); 15879371c9d4SSatish Balay if (ierr) { 15889371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15899371c9d4SSatish Balay PetscFunctionReturn(NULL); 15909371c9d4SSatish Balay } 15915c6c1daeSBarry Smith PetscFunctionReturn(viewer); 15925c6c1daeSBarry Smith } 1593