xref: /petsc/src/sys/classes/viewer/impls/binary/binv.c (revision f253e43cc674c8507d337bbb5ef3ec57f9e3fddc)
15c6c1daeSBarry Smith 
2af0996ceSBarry Smith #include <petsc/private/viewerimpl.h>    /*I   "petscviewer.h"   I*/
35c6c1daeSBarry Smith #include <fcntl.h>
45c6c1daeSBarry Smith #if defined(PETSC_HAVE_UNISTD_H)
55c6c1daeSBarry Smith #include <unistd.h>
65c6c1daeSBarry Smith #endif
75c6c1daeSBarry Smith #if defined(PETSC_HAVE_IO_H)
85c6c1daeSBarry Smith #include <io.h>
95c6c1daeSBarry Smith #endif
105c6c1daeSBarry Smith 
115c6c1daeSBarry Smith typedef struct  {
125c6c1daeSBarry Smith   int           fdes;                 /* file descriptor, ignored if using MPI IO */
135c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
14bc196f7cSDave May   PetscBool     usempiio;
155c6c1daeSBarry Smith   MPI_File      mfdes;                /* ignored unless using MPI IO */
16e8a65b7dSLisandro Dalcin   MPI_File      mfsub;                /* subviewer support */
175c6c1daeSBarry Smith   MPI_Offset    moff;
185c6c1daeSBarry Smith #endif
195c6c1daeSBarry Smith   PetscFileMode btype;                /* read or write? */
205c6c1daeSBarry Smith   FILE          *fdes_info;           /* optional file containing info on binary file*/
215c6c1daeSBarry Smith   PetscBool     storecompressed;      /* gzip the write binary file when closing it*/
225c6c1daeSBarry Smith   char          *filename;
23f90597f1SStefano Zampini   char          *ogzfilename;         /* gzip can be run after the filename has been updated */
245c6c1daeSBarry Smith   PetscBool     skipinfo;             /* Don't create info file for writing; don't use for reading */
255c6c1daeSBarry Smith   PetscBool     skipoptions;          /* don't use PETSc options database when loading */
265c6c1daeSBarry Smith   PetscInt      flowcontrol;          /* allow only <flowcontrol> messages outstanding at a time while doing IO */
275c6c1daeSBarry Smith   PetscBool     skipheader;           /* don't write header, only raw data */
28a261c58fSBarry Smith   PetscBool     matlabheaderwritten;  /* if format is PETSC_VIEWER_BINARY_MATLAB has the MATLAB .info header been written yet */
29c98fd787SBarry Smith   PetscBool     setfromoptionscalled;
305c6c1daeSBarry Smith } PetscViewer_Binary;
315c6c1daeSBarry Smith 
3281f0254dSBarry Smith static PetscErrorCode PetscViewerGetSubViewer_Binary(PetscViewer viewer,MPI_Comm comm,PetscViewer *outviewer)
335c6c1daeSBarry Smith {
345c6c1daeSBarry Smith   int                rank;
355c6c1daeSBarry Smith   PetscErrorCode     ierr;
36e8a65b7dSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
375c6c1daeSBarry Smith 
385c6c1daeSBarry Smith   PetscFunctionBegin;
39c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
40e8a65b7dSLisandro Dalcin 
41e8a65b7dSLisandro Dalcin   /* Return subviewer in process zero */
42ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
435c6c1daeSBarry Smith   if (!rank) {
44e5afcf28SBarry Smith     PetscMPIInt flg;
45e5afcf28SBarry Smith 
46e5afcf28SBarry Smith     ierr = MPI_Comm_compare(PETSC_COMM_SELF,comm,&flg);CHKERRQ(ierr);
47e5afcf28SBarry Smith     if (flg != MPI_IDENT && flg != MPI_CONGRUENT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscViewerGetSubViewer() for PETSCVIEWERBINARY requires a singleton MPI_Comm");
48e5afcf28SBarry Smith     ierr = PetscViewerCreate(comm,outviewer);CHKERRQ(ierr);
495c6c1daeSBarry Smith     ierr = PetscViewerSetType(*outviewer,PETSCVIEWERBINARY);CHKERRQ(ierr);
50e8a65b7dSLisandro Dalcin     ierr = PetscMemcpy((*outviewer)->data,vbinary,sizeof(PetscViewer_Binary));CHKERRQ(ierr);
5112f4c3a9SLisandro Dalcin     (*outviewer)->setupcalled = PETSC_TRUE;
5296509d17SLisandro Dalcin   } else {
5396509d17SLisandro Dalcin     *outviewer = NULL;
5496509d17SLisandro Dalcin   }
55e8a65b7dSLisandro Dalcin 
56e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
57e8a65b7dSLisandro Dalcin   if (vbinary->usempiio && *outviewer) {
58e8a65b7dSLisandro Dalcin     PetscViewer_Binary *obinary = (PetscViewer_Binary*)(*outviewer)->data;
59e8a65b7dSLisandro Dalcin     /* Parent viewer opens a new MPI file handle on PETSC_COMM_SELF and keeps track of it for future reuse */
60e8a65b7dSLisandro Dalcin     if (vbinary->mfsub == MPI_FILE_NULL) {
61e8a65b7dSLisandro Dalcin       int amode;
62e8a65b7dSLisandro Dalcin       switch (vbinary->btype) {
63e8a65b7dSLisandro Dalcin       case FILE_MODE_READ:   amode = MPI_MODE_RDONLY; break;
64e8a65b7dSLisandro Dalcin       case FILE_MODE_WRITE:  amode = MPI_MODE_WRONLY; break;
6522a8f86cSLisandro Dalcin       case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY; break;
66e8a65b7dSLisandro Dalcin       default: SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported file mode %s",PetscFileModes[vbinary->btype]);
67e8a65b7dSLisandro Dalcin       }
68e8a65b7dSLisandro Dalcin       ierr = MPI_File_open(PETSC_COMM_SELF,vbinary->filename,amode,MPI_INFO_NULL,&vbinary->mfsub);CHKERRQ(ierr);
69e8a65b7dSLisandro Dalcin     }
70e8a65b7dSLisandro Dalcin     /* Subviewer gets the MPI file handle on PETSC_COMM_SELF */
71e8a65b7dSLisandro Dalcin     obinary->mfdes = vbinary->mfsub;
72e8a65b7dSLisandro Dalcin     obinary->mfsub = MPI_FILE_NULL;
73e8a65b7dSLisandro Dalcin     obinary->moff  = vbinary->moff;
74e8a65b7dSLisandro Dalcin   }
75e8a65b7dSLisandro Dalcin #endif
765c6c1daeSBarry Smith   PetscFunctionReturn(0);
775c6c1daeSBarry Smith }
785c6c1daeSBarry Smith 
7981f0254dSBarry Smith static PetscErrorCode PetscViewerRestoreSubViewer_Binary(PetscViewer viewer,MPI_Comm comm,PetscViewer *outviewer)
805c6c1daeSBarry Smith {
81e5afcf28SBarry Smith   PetscMPIInt        rank;
82e8a65b7dSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
83e8a65b7dSLisandro Dalcin   PetscErrorCode     ierr;
84e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
85e8a65b7dSLisandro Dalcin   MPI_Offset         moff = 0;
86e8a65b7dSLisandro Dalcin #endif
875c6c1daeSBarry Smith 
885c6c1daeSBarry Smith   PetscFunctionBegin;
89ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
90e8a65b7dSLisandro Dalcin   if (rank && *outviewer) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Subviewer not obtained from viewer");
91e8a65b7dSLisandro Dalcin 
92e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
93e8a65b7dSLisandro Dalcin   if (vbinary->usempiio && *outviewer) {
94e8a65b7dSLisandro Dalcin     PetscViewer_Binary *obinary = (PetscViewer_Binary*)(*outviewer)->data;
95e8a65b7dSLisandro Dalcin     if (obinary->mfdes != vbinary->mfsub) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Subviewer not obtained from viewer");
96e8a65b7dSLisandro Dalcin     moff = obinary->moff;
97e8a65b7dSLisandro Dalcin   }
98e8a65b7dSLisandro Dalcin #endif
99e8a65b7dSLisandro Dalcin 
100e8a65b7dSLisandro Dalcin   if (*outviewer) {
101e8a65b7dSLisandro Dalcin     PetscViewer_Binary *obinary = (PetscViewer_Binary*)(*outviewer)->data;
102e8a65b7dSLisandro Dalcin     if (obinary->fdes != vbinary->fdes) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Subviewer not obtained from viewer");
1035c6c1daeSBarry Smith     ierr = PetscFree((*outviewer)->data);CHKERRQ(ierr);
1045c6c1daeSBarry Smith     ierr = PetscHeaderDestroy(outviewer);CHKERRQ(ierr);
1055c6c1daeSBarry Smith   }
106e8a65b7dSLisandro Dalcin 
107e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
108e8a65b7dSLisandro Dalcin   if (vbinary->usempiio) {
109e8a65b7dSLisandro Dalcin     PetscInt64 ioff = (PetscInt64)moff; /* We could use MPI_OFFSET datatype (requires MPI 2.2) */
110e8a65b7dSLisandro Dalcin     ierr = MPI_Bcast(&ioff,1,MPIU_INT64,0,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr);
111e8a65b7dSLisandro Dalcin     vbinary->moff = (MPI_Offset)ioff;
112e8a65b7dSLisandro Dalcin   }
113e8a65b7dSLisandro Dalcin #endif
1145c6c1daeSBarry Smith   PetscFunctionReturn(0);
1155c6c1daeSBarry Smith }
1165c6c1daeSBarry Smith 
1175c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
1185c6c1daeSBarry Smith /*@C
11922a8f86cSLisandro Dalcin     PetscViewerBinaryGetMPIIOOffset - Gets the current global offset that should be passed to MPI_File_set_view() or MPI_File_{write|read}_at[_all]()
1205c6c1daeSBarry Smith 
1215c6c1daeSBarry Smith     Not Collective
1225c6c1daeSBarry Smith 
1235c6c1daeSBarry Smith     Input Parameter:
1245c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
1255c6c1daeSBarry Smith 
1265c6c1daeSBarry Smith     Output Parameter:
12722a8f86cSLisandro Dalcin .   off - the current global offset
1285c6c1daeSBarry Smith 
1295c6c1daeSBarry Smith     Level: advanced
1305c6c1daeSBarry Smith 
1315c6c1daeSBarry Smith     Fortran Note:
1325c6c1daeSBarry Smith     This routine is not supported in Fortran.
1335c6c1daeSBarry Smith 
1345c6c1daeSBarry Smith     Use PetscViewerBinaryAddMPIIOOffset() to increase this value after you have written a view.
1355c6c1daeSBarry Smith 
1365c6c1daeSBarry Smith 
13767918a83SBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryAddMPIIOOffset()
1385c6c1daeSBarry Smith @*/
1395c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetMPIIOOffset(PetscViewer viewer,MPI_Offset *off)
1405c6c1daeSBarry Smith {
14122a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
1425c6c1daeSBarry Smith 
1435c6c1daeSBarry Smith   PetscFunctionBegin;
14422a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
14522a8f86cSLisandro Dalcin   PetscValidPointer(off,2);
14622a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
1475c6c1daeSBarry Smith   *off = vbinary->moff;
1485c6c1daeSBarry Smith   PetscFunctionReturn(0);
1495c6c1daeSBarry Smith }
1505c6c1daeSBarry Smith 
1515c6c1daeSBarry Smith /*@C
15222a8f86cSLisandro Dalcin     PetscViewerBinaryAddMPIIOOffset - Adds to the current global offset
1535c6c1daeSBarry Smith 
15422a8f86cSLisandro Dalcin     Logically Collective
1555c6c1daeSBarry Smith 
1565c6c1daeSBarry Smith     Input Parameters:
1575c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
15822a8f86cSLisandro Dalcin -   off - the addition to the global offset
1595c6c1daeSBarry Smith 
1605c6c1daeSBarry Smith     Level: advanced
1615c6c1daeSBarry Smith 
1625c6c1daeSBarry Smith     Fortran Note:
1635c6c1daeSBarry Smith     This routine is not supported in Fortran.
1645c6c1daeSBarry Smith 
16522a8f86cSLisandro Dalcin     Use PetscViewerBinaryGetMPIIOOffset() to get the value that you should pass to MPI_File_set_view() or MPI_File_{write|read}_at[_all]()
1665c6c1daeSBarry Smith 
1675c6c1daeSBarry Smith 
16867918a83SBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
1695c6c1daeSBarry Smith @*/
1705c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryAddMPIIOOffset(PetscViewer viewer,MPI_Offset off)
1715c6c1daeSBarry Smith {
17222a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
1735c6c1daeSBarry Smith 
1745c6c1daeSBarry Smith   PetscFunctionBegin;
17522a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
17622a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveInt(viewer,(PetscInt)off,2);
17722a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
1785c6c1daeSBarry Smith   vbinary->moff += off;
1795c6c1daeSBarry Smith   PetscFunctionReturn(0);
1805c6c1daeSBarry Smith }
1815c6c1daeSBarry Smith 
1825c6c1daeSBarry Smith /*@C
1835c6c1daeSBarry Smith     PetscViewerBinaryGetMPIIODescriptor - Extracts the MPI IO file descriptor from a PetscViewer.
1845c6c1daeSBarry Smith 
1855c6c1daeSBarry Smith     Not Collective
1865c6c1daeSBarry Smith 
1875c6c1daeSBarry Smith     Input Parameter:
1885c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
1895c6c1daeSBarry Smith 
1905c6c1daeSBarry Smith     Output Parameter:
1915c6c1daeSBarry Smith .   fdes - file descriptor
1925c6c1daeSBarry Smith 
1935c6c1daeSBarry Smith     Level: advanced
1945c6c1daeSBarry Smith 
1955c6c1daeSBarry Smith     Fortran Note:
1965c6c1daeSBarry Smith     This routine is not supported in Fortran.
1975c6c1daeSBarry Smith 
1985c6c1daeSBarry Smith 
19967918a83SBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
2005c6c1daeSBarry Smith @*/
2015c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetMPIIODescriptor(PetscViewer viewer,MPI_File *fdes)
2025c6c1daeSBarry Smith {
20303a1d59fSDave May   PetscErrorCode     ierr;
20422a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
2055c6c1daeSBarry Smith 
2065c6c1daeSBarry Smith   PetscFunctionBegin;
20722a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
20822a8f86cSLisandro Dalcin   PetscValidPointer(fdes,2);
209c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
21022a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
2115c6c1daeSBarry Smith   *fdes = vbinary->mfdes;
2125c6c1daeSBarry Smith   PetscFunctionReturn(0);
2135c6c1daeSBarry Smith }
2145c6c1daeSBarry Smith 
21581f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetUseMPIIO_Binary(PetscViewer viewer,PetscBool  *flg)
216a8aae444SDave May {
217a8aae444SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
218a8aae444SDave May 
219a8aae444SDave May   PetscFunctionBegin;
220bc196f7cSDave May   *flg = vbinary->usempiio;
221a8aae444SDave May   PetscFunctionReturn(0);
222a8aae444SDave May }
223a8aae444SDave May #endif
224a8aae444SDave May 
225a8aae444SDave May 
2265c6c1daeSBarry Smith /*@C
227bc196f7cSDave May     PetscViewerBinaryGetUseMPIIO - Returns PETSC_TRUE if the binary viewer uses MPI-IO.
2285c6c1daeSBarry Smith 
2295c6c1daeSBarry Smith     Not Collective
2305c6c1daeSBarry Smith 
2315c6c1daeSBarry Smith     Input Parameter:
2325c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
2335c6c1daeSBarry Smith 
2345c6c1daeSBarry Smith     Output Parameter:
235bc196f7cSDave May -   flg - PETSC_TRUE if MPI-IO is being used
2365c6c1daeSBarry Smith 
2375c6c1daeSBarry Smith     Options Database:
2385c6c1daeSBarry Smith     -viewer_binary_mpiio : Flag for using MPI-IO
2395c6c1daeSBarry Smith 
2405c6c1daeSBarry Smith     Level: advanced
2415c6c1daeSBarry Smith 
242bc196f7cSDave May     Note:
243bc196f7cSDave May     If MPI-IO is not available, this function will always return PETSC_FALSE
244bc196f7cSDave May 
2455c6c1daeSBarry Smith     Fortran Note:
2465c6c1daeSBarry Smith     This routine is not supported in Fortran.
2475c6c1daeSBarry Smith 
2485c6c1daeSBarry Smith 
24967918a83SBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetInfoPointer(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
2505c6c1daeSBarry Smith @*/
251bc196f7cSDave May PetscErrorCode PetscViewerBinaryGetUseMPIIO(PetscViewer viewer,PetscBool *flg)
2525c6c1daeSBarry Smith {
253a8aae444SDave May   PetscErrorCode ierr;
2545c6c1daeSBarry Smith 
2555c6c1daeSBarry Smith   PetscFunctionBegin;
256a8aae444SDave May   *flg = PETSC_FALSE;
257bc196f7cSDave May   ierr = PetscTryMethod(viewer,"PetscViewerBinaryGetUseMPIIO_C",(PetscViewer,PetscBool*),(viewer,flg));CHKERRQ(ierr);
2585c6c1daeSBarry Smith   PetscFunctionReturn(0);
2595c6c1daeSBarry Smith }
2605c6c1daeSBarry Smith 
26181f0254dSBarry Smith static PetscErrorCode  PetscViewerBinaryGetFlowControl_Binary(PetscViewer viewer,PetscInt *fc)
2625c6c1daeSBarry Smith {
2635c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
2645c6c1daeSBarry Smith 
2655c6c1daeSBarry Smith   PetscFunctionBegin;
2665c6c1daeSBarry Smith   *fc = vbinary->flowcontrol;
2675c6c1daeSBarry Smith   PetscFunctionReturn(0);
2685c6c1daeSBarry Smith }
2695c6c1daeSBarry Smith 
2705c6c1daeSBarry Smith /*@C
2715c6c1daeSBarry Smith     PetscViewerBinaryGetFlowControl - Returns how many messages are allowed to outstanding at the same time during parallel IO reads/writes
2725c6c1daeSBarry Smith 
2735c6c1daeSBarry Smith     Not Collective
2745c6c1daeSBarry Smith 
2755c6c1daeSBarry Smith     Input Parameter:
2765c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
2775c6c1daeSBarry Smith 
2785c6c1daeSBarry Smith     Output Parameter:
2795c6c1daeSBarry Smith .   fc - the number of messages
2805c6c1daeSBarry Smith 
2815c6c1daeSBarry Smith     Level: advanced
2825c6c1daeSBarry Smith 
2835c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinarySetFlowControl()
2845c6c1daeSBarry Smith 
2855c6c1daeSBarry Smith @*/
2865c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetFlowControl(PetscViewer viewer,PetscInt *fc)
2875c6c1daeSBarry Smith {
2885c6c1daeSBarry Smith   PetscErrorCode ierr;
2895c6c1daeSBarry Smith 
2905c6c1daeSBarry Smith   PetscFunctionBegin;
291163d334eSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerBinaryGetFlowControl_C",(PetscViewer,PetscInt*),(viewer,fc));CHKERRQ(ierr);
2925c6c1daeSBarry Smith   PetscFunctionReturn(0);
2935c6c1daeSBarry Smith }
2945c6c1daeSBarry Smith 
29581f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetFlowControl_Binary(PetscViewer viewer,PetscInt fc)
2965c6c1daeSBarry Smith {
2975c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
2985c6c1daeSBarry Smith 
2995c6c1daeSBarry Smith   PetscFunctionBegin;
300ce94432eSBarry Smith   if (fc <= 1) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ARG_OUTOFRANGE,"Flow control count must be greater than 1, %D was set",fc);
3015c6c1daeSBarry Smith   vbinary->flowcontrol = fc;
3025c6c1daeSBarry Smith   PetscFunctionReturn(0);
3035c6c1daeSBarry Smith }
3045c6c1daeSBarry Smith 
3055c6c1daeSBarry Smith /*@C
306639ff905SBarry Smith     PetscViewerBinarySetFlowControl - Sets how many messages are allowed to outstanding at the same time during parallel IO reads/writes
3075c6c1daeSBarry Smith 
3085c6c1daeSBarry Smith     Not Collective
3095c6c1daeSBarry Smith 
3105c6c1daeSBarry Smith     Input Parameter:
3115c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
312639ff905SBarry Smith -   fc - the number of messages, defaults to 256 if this function was not called
3135c6c1daeSBarry Smith 
3145c6c1daeSBarry Smith     Level: advanced
3155c6c1daeSBarry Smith 
3165c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetFlowControl()
3175c6c1daeSBarry Smith 
3185c6c1daeSBarry Smith @*/
3195c6c1daeSBarry Smith PetscErrorCode  PetscViewerBinarySetFlowControl(PetscViewer viewer,PetscInt fc)
3205c6c1daeSBarry Smith {
3215c6c1daeSBarry Smith   PetscErrorCode ierr;
3225c6c1daeSBarry Smith 
3235c6c1daeSBarry Smith   PetscFunctionBegin;
3245c6c1daeSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetFlowControl_C",(PetscViewer,PetscInt),(viewer,fc));CHKERRQ(ierr);
3255c6c1daeSBarry Smith   PetscFunctionReturn(0);
3265c6c1daeSBarry Smith }
3275c6c1daeSBarry Smith 
3285c6c1daeSBarry Smith /*@C
3295c6c1daeSBarry Smith     PetscViewerBinaryGetDescriptor - Extracts the file descriptor from a PetscViewer.
3305c6c1daeSBarry Smith 
3315872f025SBarry Smith     Collective On PetscViewer
3325c6c1daeSBarry Smith 
3335c6c1daeSBarry Smith     Input Parameter:
3345c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
3355c6c1daeSBarry Smith 
3365c6c1daeSBarry Smith     Output Parameter:
3375c6c1daeSBarry Smith .   fdes - file descriptor
3385c6c1daeSBarry Smith 
3395c6c1daeSBarry Smith     Level: advanced
3405c6c1daeSBarry Smith 
3415c6c1daeSBarry Smith     Notes:
3425c6c1daeSBarry Smith       For writable binary PetscViewers, the descriptor will only be valid for the
3435c6c1daeSBarry Smith     first processor in the communicator that shares the PetscViewer. For readable
3445c6c1daeSBarry Smith     files it will only be valid on nodes that have the file. If node 0 does not
3455c6c1daeSBarry Smith     have the file it generates an error even if another node does have the file.
3465c6c1daeSBarry Smith 
3475c6c1daeSBarry Smith     Fortran Note:
3485c6c1daeSBarry Smith     This routine is not supported in Fortran.
3495c6c1daeSBarry Smith 
35095452b02SPatrick Sanan     Developer Notes:
35195452b02SPatrick Sanan     This must be called on all processes because Dave May changed
3525872f025SBarry Smith     the source code that this may be trigger a PetscViewerSetUp() call if it was not previously triggered.
3535872f025SBarry Smith 
3545872f025SBarry Smith 
3555c6c1daeSBarry Smith 
3565c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer()
3575c6c1daeSBarry Smith @*/
3585c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetDescriptor(PetscViewer viewer,int *fdes)
3595c6c1daeSBarry Smith {
36003a1d59fSDave May   PetscErrorCode     ierr;
36122a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
3625c6c1daeSBarry Smith 
3635c6c1daeSBarry Smith   PetscFunctionBegin;
36422a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
36522a8f86cSLisandro Dalcin   PetscValidPointer(fdes,2);
366c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
36722a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
3685c6c1daeSBarry Smith   *fdes = vbinary->fdes;
3695c6c1daeSBarry Smith   PetscFunctionReturn(0);
3705c6c1daeSBarry Smith }
3715c6c1daeSBarry Smith 
3725c6c1daeSBarry Smith /*@
3735c6c1daeSBarry Smith     PetscViewerBinarySkipInfo - Binary file will not have .info file created with it
3745c6c1daeSBarry Smith 
3755c6c1daeSBarry Smith     Not Collective
3765c6c1daeSBarry Smith 
377fd292e60Sprj-     Input Parameter:
3785c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerCreate()
3795c6c1daeSBarry Smith 
3805c6c1daeSBarry Smith     Options Database Key:
3815c6c1daeSBarry Smith .   -viewer_binary_skip_info
3825c6c1daeSBarry Smith 
3835c6c1daeSBarry Smith     Level: advanced
3845c6c1daeSBarry Smith 
38595452b02SPatrick Sanan     Notes:
38695452b02SPatrick Sanan     This must be called after PetscViewerSetType(). If you use PetscViewerBinaryOpen() then
3875c6c1daeSBarry Smith     you can only skip the info file with the -viewer_binary_skip_info flag. To use the function you must open the
388a2d7db39SDave May     viewer with PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinarySkipInfo().
3895c6c1daeSBarry Smith 
3905c6c1daeSBarry Smith     The .info contains meta information about the data in the binary file, for example the block size if it was
3915c6c1daeSBarry Smith     set for a vector or matrix.
3925c6c1daeSBarry Smith 
3935c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySetSkipOptions(),
394807ea322SDave May           PetscViewerBinaryGetSkipOptions(), PetscViewerBinaryGetSkipInfo()
3955c6c1daeSBarry Smith @*/
3965c6c1daeSBarry Smith PetscErrorCode PetscViewerBinarySkipInfo(PetscViewer viewer)
3975c6c1daeSBarry Smith {
39822a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
3995c6c1daeSBarry Smith 
4005c6c1daeSBarry Smith   PetscFunctionBegin;
40122a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
40222a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
4035c6c1daeSBarry Smith   vbinary->skipinfo = PETSC_TRUE;
4045c6c1daeSBarry Smith   PetscFunctionReturn(0);
4055c6c1daeSBarry Smith }
4065c6c1daeSBarry Smith 
40781f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetSkipInfo_Binary(PetscViewer viewer,PetscBool skip)
408807ea322SDave May {
409807ea322SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
410807ea322SDave May 
411807ea322SDave May   PetscFunctionBegin;
412807ea322SDave May   vbinary->skipinfo = skip;
413807ea322SDave May   PetscFunctionReturn(0);
414807ea322SDave May }
415807ea322SDave May 
416807ea322SDave May /*@
417807ea322SDave May     PetscViewerBinarySetSkipInfo - Binary file will not have .info file created with it
418807ea322SDave May 
419807ea322SDave May     Not Collective
420807ea322SDave May 
421fd292e60Sprj-     Input Parameter:
422807ea322SDave May .   viewer - PetscViewer context, obtained from PetscViewerCreate()
423807ea322SDave May 
424807ea322SDave May     Options Database Key:
425807ea322SDave May .   -viewer_binary_skip_info
426807ea322SDave May 
427807ea322SDave May     Level: advanced
428807ea322SDave May 
429807ea322SDave May .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySetSkipOptions(),
430807ea322SDave May           PetscViewerBinaryGetSkipOptions(), PetscViewerBinaryGetSkipInfo()
431807ea322SDave May @*/
432807ea322SDave May PetscErrorCode PetscViewerBinarySetSkipInfo(PetscViewer viewer,PetscBool skip)
433807ea322SDave May {
434807ea322SDave May   PetscErrorCode ierr;
435807ea322SDave May 
436807ea322SDave May   PetscFunctionBegin;
437807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetSkipInfo_C",(PetscViewer,PetscBool),(viewer,skip));CHKERRQ(ierr);
438807ea322SDave May   PetscFunctionReturn(0);
439807ea322SDave May }
440807ea322SDave May 
44181f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetSkipInfo_Binary(PetscViewer viewer,PetscBool *skip)
442807ea322SDave May {
443807ea322SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
444807ea322SDave May 
445807ea322SDave May   PetscFunctionBegin;
446807ea322SDave May   *skip  = vbinary->skipinfo;
447807ea322SDave May   PetscFunctionReturn(0);
448807ea322SDave May }
449807ea322SDave May 
450807ea322SDave May /*@
451807ea322SDave May     PetscViewerBinaryGetSkipInfo - check if viewer wrote a .info file
452807ea322SDave May 
453807ea322SDave May     Not Collective
454807ea322SDave May 
455807ea322SDave May     Input Parameter:
456807ea322SDave May .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
457807ea322SDave May 
458807ea322SDave May     Output Parameter:
459807ea322SDave May .   skip - PETSC_TRUE implies the .info file was not generated
460807ea322SDave May 
461807ea322SDave May     Level: advanced
462807ea322SDave May 
46395452b02SPatrick Sanan     Notes:
46495452b02SPatrick Sanan     This must be called after PetscViewerSetType()
465807ea322SDave May 
466807ea322SDave May .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
467807ea322SDave May           PetscViewerBinarySetSkipOptions(), PetscViewerBinarySetSkipInfo()
468807ea322SDave May @*/
469807ea322SDave May PetscErrorCode PetscViewerBinaryGetSkipInfo(PetscViewer viewer,PetscBool *skip)
470807ea322SDave May {
471807ea322SDave May   PetscErrorCode ierr;
472807ea322SDave May 
473807ea322SDave May   PetscFunctionBegin;
474807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinaryGetSkipInfo_C",(PetscViewer,PetscBool*),(viewer,skip));CHKERRQ(ierr);
475807ea322SDave May   PetscFunctionReturn(0);
476807ea322SDave May }
477807ea322SDave May 
47881f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetSkipOptions_Binary(PetscViewer viewer,PetscBool skip)
479807ea322SDave May {
480807ea322SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
481807ea322SDave May 
482807ea322SDave May   PetscFunctionBegin;
483807ea322SDave May   vbinary->skipoptions = skip;
484807ea322SDave May   PetscFunctionReturn(0);
485807ea322SDave May }
486807ea322SDave May 
4875c6c1daeSBarry Smith /*@
4885c6c1daeSBarry Smith     PetscViewerBinarySetSkipOptions - do not use the PETSc options database when loading objects
4895c6c1daeSBarry Smith 
4905c6c1daeSBarry Smith     Not Collective
4915c6c1daeSBarry Smith 
4925c6c1daeSBarry Smith     Input Parameters:
4935c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
4945c6c1daeSBarry Smith -   skip - PETSC_TRUE means do not use
4955c6c1daeSBarry Smith 
4965c6c1daeSBarry Smith     Options Database Key:
4975c6c1daeSBarry Smith .   -viewer_binary_skip_options
4985c6c1daeSBarry Smith 
4995c6c1daeSBarry Smith     Level: advanced
5005c6c1daeSBarry Smith 
50195452b02SPatrick Sanan     Notes:
50295452b02SPatrick Sanan     This must be called after PetscViewerSetType()
5035c6c1daeSBarry Smith 
5045c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
5055c6c1daeSBarry Smith           PetscViewerBinaryGetSkipOptions()
5065c6c1daeSBarry Smith @*/
5075c6c1daeSBarry Smith PetscErrorCode PetscViewerBinarySetSkipOptions(PetscViewer viewer,PetscBool skip)
5085c6c1daeSBarry Smith {
509807ea322SDave May   PetscErrorCode ierr;
5105c6c1daeSBarry Smith 
5115c6c1daeSBarry Smith   PetscFunctionBegin;
512807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetSkipOptions_C",(PetscViewer,PetscBool),(viewer,skip));CHKERRQ(ierr);
513807ea322SDave May   PetscFunctionReturn(0);
514807ea322SDave May }
515807ea322SDave May 
51681f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetSkipOptions_Binary(PetscViewer viewer,PetscBool *skip)
517807ea322SDave May {
51822a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;;
519807ea322SDave May 
520807ea322SDave May   PetscFunctionBegin;
521807ea322SDave May   *skip = vbinary->skipoptions;
5225c6c1daeSBarry Smith   PetscFunctionReturn(0);
5235c6c1daeSBarry Smith }
5245c6c1daeSBarry Smith 
5255c6c1daeSBarry Smith /*@
5265c6c1daeSBarry Smith     PetscViewerBinaryGetSkipOptions - checks if viewer uses the PETSc options database when loading objects
5275c6c1daeSBarry Smith 
5285c6c1daeSBarry Smith     Not Collective
5295c6c1daeSBarry Smith 
5305c6c1daeSBarry Smith     Input Parameter:
5315c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
5325c6c1daeSBarry Smith 
5335c6c1daeSBarry Smith     Output Parameter:
5345c6c1daeSBarry Smith .   skip - PETSC_TRUE means do not use
5355c6c1daeSBarry Smith 
5365c6c1daeSBarry Smith     Level: advanced
5375c6c1daeSBarry Smith 
53895452b02SPatrick Sanan     Notes:
53995452b02SPatrick Sanan     This must be called after PetscViewerSetType()
5405c6c1daeSBarry Smith 
5415c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
5425c6c1daeSBarry Smith           PetscViewerBinarySetSkipOptions()
5435c6c1daeSBarry Smith @*/
5445c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetSkipOptions(PetscViewer viewer,PetscBool *skip)
5455c6c1daeSBarry Smith {
546807ea322SDave May   PetscErrorCode ierr;
5475c6c1daeSBarry Smith 
5485c6c1daeSBarry Smith   PetscFunctionBegin;
549807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinaryGetSkipOptions_C",(PetscViewer,PetscBool*),(viewer,skip));CHKERRQ(ierr);
5505c6c1daeSBarry Smith   PetscFunctionReturn(0);
5515c6c1daeSBarry Smith }
5525c6c1daeSBarry Smith 
55381f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetSkipHeader_Binary(PetscViewer viewer,PetscBool skip)
5545c6c1daeSBarry Smith {
5555c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
5565c6c1daeSBarry Smith 
5575c6c1daeSBarry Smith   PetscFunctionBegin;
5585c6c1daeSBarry Smith   vbinary->skipheader = skip;
5595c6c1daeSBarry Smith   PetscFunctionReturn(0);
5605c6c1daeSBarry Smith }
5615c6c1daeSBarry Smith 
5625c6c1daeSBarry Smith /*@
5635c6c1daeSBarry Smith     PetscViewerBinarySetSkipHeader - do not write a header with size information on output, just raw data
5645c6c1daeSBarry Smith 
5655c6c1daeSBarry Smith     Not Collective
5665c6c1daeSBarry Smith 
5675c6c1daeSBarry Smith     Input Parameters:
5685c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
5695c6c1daeSBarry Smith -   skip - PETSC_TRUE means do not write header
5705c6c1daeSBarry Smith 
5715c6c1daeSBarry Smith     Options Database Key:
5725c6c1daeSBarry Smith .   -viewer_binary_skip_header
5735c6c1daeSBarry Smith 
5745c6c1daeSBarry Smith     Level: advanced
5755c6c1daeSBarry Smith 
57695452b02SPatrick Sanan     Notes:
57795452b02SPatrick Sanan     This must be called after PetscViewerSetType()
5785c6c1daeSBarry Smith 
5795c6c1daeSBarry Smith            Can ONLY be called on a binary viewer
5805c6c1daeSBarry Smith 
5815c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
5825c6c1daeSBarry Smith           PetscViewerBinaryGetSkipHeader()
5835c6c1daeSBarry Smith @*/
5845c6c1daeSBarry Smith PetscErrorCode PetscViewerBinarySetSkipHeader(PetscViewer viewer,PetscBool skip)
5855c6c1daeSBarry Smith {
5865c6c1daeSBarry Smith   PetscErrorCode ierr;
5875c6c1daeSBarry Smith 
5885c6c1daeSBarry Smith   PetscFunctionBegin;
5895c6c1daeSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetSkipHeader_C",(PetscViewer,PetscBool),(viewer,skip));CHKERRQ(ierr);
5905c6c1daeSBarry Smith   PetscFunctionReturn(0);
5915c6c1daeSBarry Smith }
5925c6c1daeSBarry Smith 
59381f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetSkipHeader_Binary(PetscViewer viewer,PetscBool  *skip)
5945c6c1daeSBarry Smith {
5955c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
5965c6c1daeSBarry Smith 
5975c6c1daeSBarry Smith   PetscFunctionBegin;
5985c6c1daeSBarry Smith   *skip = vbinary->skipheader;
5995c6c1daeSBarry Smith   PetscFunctionReturn(0);
6005c6c1daeSBarry Smith }
6015c6c1daeSBarry Smith 
6025c6c1daeSBarry Smith /*@
6035c6c1daeSBarry Smith     PetscViewerBinaryGetSkipHeader - checks whether to write a header with size information on output, or just raw data
6045c6c1daeSBarry Smith 
6055c6c1daeSBarry Smith     Not Collective
6065c6c1daeSBarry Smith 
6075c6c1daeSBarry Smith     Input Parameter:
6085c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
6095c6c1daeSBarry Smith 
6105c6c1daeSBarry Smith     Output Parameter:
6115c6c1daeSBarry Smith .   skip - PETSC_TRUE means do not write header
6125c6c1daeSBarry Smith 
6135c6c1daeSBarry Smith     Level: advanced
6145c6c1daeSBarry Smith 
61595452b02SPatrick Sanan     Notes:
61695452b02SPatrick Sanan     This must be called after PetscViewerSetType()
6175c6c1daeSBarry Smith 
6185c6c1daeSBarry Smith             Returns false for PETSCSOCKETVIEWER, you cannot skip the header for it.
6195c6c1daeSBarry Smith 
6205c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
6215c6c1daeSBarry Smith           PetscViewerBinarySetSkipHeader()
6225c6c1daeSBarry Smith @*/
6235c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetSkipHeader(PetscViewer viewer,PetscBool  *skip)
6245c6c1daeSBarry Smith {
6255c6c1daeSBarry Smith   PetscErrorCode ierr;
6265c6c1daeSBarry Smith 
6275c6c1daeSBarry Smith   PetscFunctionBegin;
6285c6c1daeSBarry Smith   *skip = PETSC_FALSE;
629163d334eSBarry Smith   ierr  = PetscUseMethod(viewer,"PetscViewerBinaryGetSkipHeader_C",(PetscViewer,PetscBool*),(viewer,skip));CHKERRQ(ierr);
6305c6c1daeSBarry Smith   PetscFunctionReturn(0);
6315c6c1daeSBarry Smith }
6325c6c1daeSBarry Smith 
63381f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetInfoPointer_Binary(PetscViewer viewer,FILE **file)
6345c6c1daeSBarry Smith {
635f3b211e4SSatish Balay   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
636a261c58fSBarry Smith   PetscErrorCode     ierr;
637a261c58fSBarry Smith   MPI_Comm           comm;
6385c6c1daeSBarry Smith 
6395c6c1daeSBarry Smith   PetscFunctionBegin;
640c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
6415c6c1daeSBarry Smith   *file = vbinary->fdes_info;
642a261c58fSBarry Smith   if (viewer->format == PETSC_VIEWER_BINARY_MATLAB && !vbinary->matlabheaderwritten) {
643a261c58fSBarry Smith     vbinary->matlabheaderwritten = PETSC_TRUE;
644a261c58fSBarry Smith     ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
645da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#--- begin code written by PetscViewerBinary for MATLAB format ---#\n");CHKERRQ(ierr);
646da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#$$ Set.filename = '%s';\n",vbinary->filename);CHKERRQ(ierr);
647da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#$$ fd = PetscOpenFile(Set.filename);\n");CHKERRQ(ierr);
648da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n");CHKERRQ(ierr);
649a261c58fSBarry Smith   }
6505c6c1daeSBarry Smith   PetscFunctionReturn(0);
6515c6c1daeSBarry Smith }
6525c6c1daeSBarry Smith 
6535c6c1daeSBarry Smith /*@C
6545c6c1daeSBarry Smith     PetscViewerBinaryGetInfoPointer - Extracts the file pointer for the ASCII
6555c6c1daeSBarry Smith           info file associated with a binary file.
6565c6c1daeSBarry Smith 
6575c6c1daeSBarry Smith     Not Collective
6585c6c1daeSBarry Smith 
6595c6c1daeSBarry Smith     Input Parameter:
6605c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
6615c6c1daeSBarry Smith 
6625c6c1daeSBarry Smith     Output Parameter:
6630298fd71SBarry Smith .   file - file pointer  Always returns NULL if not a binary viewer
6645c6c1daeSBarry Smith 
6655c6c1daeSBarry Smith     Level: advanced
6665c6c1daeSBarry Smith 
6675c6c1daeSBarry Smith     Notes:
6685c6c1daeSBarry Smith       For writable binary PetscViewers, the descriptor will only be valid for the
6695c6c1daeSBarry Smith     first processor in the communicator that shares the PetscViewer.
6705c6c1daeSBarry Smith 
6715c6c1daeSBarry Smith     Fortran Note:
6725c6c1daeSBarry Smith     This routine is not supported in Fortran.
6735c6c1daeSBarry Smith 
6745c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetDescriptor()
6755c6c1daeSBarry Smith @*/
6765c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetInfoPointer(PetscViewer viewer,FILE **file)
6775c6c1daeSBarry Smith {
6785c6c1daeSBarry Smith   PetscErrorCode ierr;
6795c6c1daeSBarry Smith 
6805c6c1daeSBarry Smith   PetscFunctionBegin;
6810298fd71SBarry Smith   *file = NULL;
6825c6c1daeSBarry Smith   ierr  = PetscTryMethod(viewer,"PetscViewerBinaryGetInfoPointer_C",(PetscViewer,FILE **),(viewer,file));CHKERRQ(ierr);
6835c6c1daeSBarry Smith   PetscFunctionReturn(0);
6845c6c1daeSBarry Smith }
6855c6c1daeSBarry Smith 
6865c6c1daeSBarry Smith static PetscErrorCode PetscViewerFileClose_Binary(PetscViewer v)
6875c6c1daeSBarry Smith {
6885c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
6895c6c1daeSBarry Smith   PetscErrorCode     ierr;
6905c6c1daeSBarry Smith   PetscMPIInt        rank;
6915c6c1daeSBarry Smith   int                err;
6925c6c1daeSBarry Smith 
6935c6c1daeSBarry Smith   PetscFunctionBegin;
694ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)v),&rank);CHKERRQ(ierr);
6955c6c1daeSBarry Smith   if ((!rank || vbinary->btype == FILE_MODE_READ) && vbinary->fdes) {
6965c6c1daeSBarry Smith     close(vbinary->fdes);
6975c6c1daeSBarry Smith     if (!rank && vbinary->storecompressed) {
6985c6c1daeSBarry Smith       char par[PETSC_MAX_PATH_LEN],buf[PETSC_MAX_PATH_LEN];
6995c6c1daeSBarry Smith       FILE *fp;
7005c6c1daeSBarry Smith       /* compress the file */
701a126751eSBarry Smith       ierr = PetscStrncpy(par,"gzip -f ",sizeof(par));CHKERRQ(ierr);
702a126751eSBarry Smith       ierr = PetscStrlcat(par,vbinary->ogzfilename ? vbinary->ogzfilename : vbinary->filename,sizeof(par));CHKERRQ(ierr);
703f90597f1SStefano Zampini       ierr = PetscFree(vbinary->ogzfilename);CHKERRQ(ierr);
7045c6c1daeSBarry Smith #if defined(PETSC_HAVE_POPEN)
7050298fd71SBarry Smith       ierr = PetscPOpen(PETSC_COMM_SELF,NULL,par,"r",&fp);CHKERRQ(ierr);
7065c6c1daeSBarry Smith       if (fgets(buf,1024,fp)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error from command %s\n%s",par,buf);
707016831caSBarry Smith       ierr = PetscPClose(PETSC_COMM_SELF,fp);CHKERRQ(ierr);
7085c6c1daeSBarry Smith #else
7095c6c1daeSBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP_SYS,"Cannot run external programs on this machine");
7105c6c1daeSBarry Smith #endif
7115c6c1daeSBarry Smith     }
7125c6c1daeSBarry Smith   }
7135c6c1daeSBarry Smith   if (vbinary->fdes_info) {
7145c6c1daeSBarry Smith     err = fclose(vbinary->fdes_info);
7155c6c1daeSBarry Smith     if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file");
7165c6c1daeSBarry Smith   }
7175c6c1daeSBarry Smith   PetscFunctionReturn(0);
7185c6c1daeSBarry Smith }
7195c6c1daeSBarry Smith 
720e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
721e0385b85SDave May static PetscErrorCode PetscViewerFileClose_BinaryMPIIO(PetscViewer v)
722e0385b85SDave May {
723e0385b85SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
724e0385b85SDave May   int                err;
725e0385b85SDave May   PetscErrorCode     ierr;
726e0385b85SDave May 
727e0385b85SDave May   PetscFunctionBegin;
728e8a65b7dSLisandro Dalcin   if (vbinary->mfdes != MPI_FILE_NULL) {
729e0385b85SDave May     ierr = MPI_File_close(&vbinary->mfdes);CHKERRQ(ierr);
730e0385b85SDave May   }
731e8a65b7dSLisandro Dalcin   if (vbinary->mfsub != MPI_FILE_NULL) {
732e8a65b7dSLisandro Dalcin     ierr = MPI_File_close(&vbinary->mfsub);CHKERRQ(ierr);
733e8a65b7dSLisandro Dalcin   }
734e0385b85SDave May   if (vbinary->fdes_info) {
735e0385b85SDave May     err = fclose(vbinary->fdes_info);
736e0385b85SDave May     if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file");
737e0385b85SDave May   }
738e0385b85SDave May   PetscFunctionReturn(0);
739e0385b85SDave May }
740e0385b85SDave May #endif
741e0385b85SDave May 
74281f0254dSBarry Smith static PetscErrorCode PetscViewerDestroy_Binary(PetscViewer v)
7435c6c1daeSBarry Smith {
7445c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
7455c6c1daeSBarry Smith   PetscErrorCode     ierr;
7465c6c1daeSBarry Smith 
7475c6c1daeSBarry Smith   PetscFunctionBegin;
748a261c58fSBarry Smith   if (v->format == PETSC_VIEWER_BINARY_MATLAB) {
749a261c58fSBarry Smith     MPI_Comm comm;
750a261c58fSBarry Smith     FILE     *info;
751a261c58fSBarry Smith 
752a261c58fSBarry Smith     ierr = PetscObjectGetComm((PetscObject)v,&comm);CHKERRQ(ierr);
753a261c58fSBarry Smith     ierr = PetscViewerBinaryGetInfoPointer(v,&info);CHKERRQ(ierr);
754da88d4d4SJed Brown     ierr = PetscFPrintf(comm,info,"#--- begin code written by PetscViewerBinary for MATLAB format ---#\n");CHKERRQ(ierr);
755da88d4d4SJed Brown     ierr = PetscFPrintf(comm,info,"#$$ close(fd);\n");CHKERRQ(ierr);
756da88d4d4SJed Brown     ierr = PetscFPrintf(comm,info,"#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n");CHKERRQ(ierr);
757a261c58fSBarry Smith   }
7585c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
759bc196f7cSDave May   if (vbinary->usempiio) {
760e0385b85SDave May     ierr = PetscViewerFileClose_BinaryMPIIO(v);CHKERRQ(ierr);
761e0385b85SDave May   } else {
762e0385b85SDave May #endif
763e0385b85SDave May     ierr = PetscViewerFileClose_Binary(v);CHKERRQ(ierr);
764e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
7655c6c1daeSBarry Smith   }
7665c6c1daeSBarry Smith #endif
767f90597f1SStefano Zampini   ierr = PetscFree(vbinary->filename);CHKERRQ(ierr);
768f90597f1SStefano Zampini   ierr = PetscFree(vbinary->ogzfilename);CHKERRQ(ierr);
769e0385b85SDave May   ierr = PetscFree(vbinary);CHKERRQ(ierr);
77022a8f86cSLisandro Dalcin 
77122a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetFlowControl_C",NULL);CHKERRQ(ierr);
77222a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetFlowControl_C",NULL);CHKERRQ(ierr);
77322a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipHeader_C",NULL);CHKERRQ(ierr);
77422a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipHeader_C",NULL);CHKERRQ(ierr);
77522a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipOptions_C",NULL);CHKERRQ(ierr);
77622a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipOptions_C",NULL);CHKERRQ(ierr);
77722a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipInfo_C",NULL);CHKERRQ(ierr);
77822a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipInfo_C",NULL);CHKERRQ(ierr);
77922a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetInfoPointer_C",NULL);CHKERRQ(ierr);
78022a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetName_C",NULL);CHKERRQ(ierr);
78122a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetMode_C",NULL);CHKERRQ(ierr);
78222a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetMode_C",NULL);CHKERRQ(ierr);
78322a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetName_C",NULL);CHKERRQ(ierr);
78422a8f86cSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
78522a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetUseMPIIO_C",NULL);CHKERRQ(ierr);
78622a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetUseMPIIO_C",NULL);CHKERRQ(ierr);
78722a8f86cSLisandro Dalcin #endif
788e0385b85SDave May   PetscFunctionReturn(0);
789e0385b85SDave May }
7905c6c1daeSBarry Smith 
7915c6c1daeSBarry Smith /*@C
7925c6c1daeSBarry Smith    PetscViewerBinaryOpen - Opens a file for binary input/output.
7935c6c1daeSBarry Smith 
794d083f849SBarry Smith    Collective
7955c6c1daeSBarry Smith 
7965c6c1daeSBarry Smith    Input Parameters:
7975c6c1daeSBarry Smith +  comm - MPI communicator
7985c6c1daeSBarry Smith .  name - name of file
7995c6c1daeSBarry Smith -  type - type of file
8005c6c1daeSBarry Smith $    FILE_MODE_WRITE - create new file for binary output
8015c6c1daeSBarry Smith $    FILE_MODE_READ - open existing file for binary input
8025c6c1daeSBarry Smith $    FILE_MODE_APPEND - open existing file for binary output
8035c6c1daeSBarry Smith 
8045c6c1daeSBarry Smith    Output Parameter:
8055c6c1daeSBarry Smith .  binv - PetscViewer for binary input/output to use with the specified file
8065c6c1daeSBarry Smith 
8075c6c1daeSBarry Smith     Options Database Keys:
80863c55180SPatrick Sanan +    -viewer_binary_filename <name> -
80963c55180SPatrick Sanan .    -viewer_binary_skip_info -
81063c55180SPatrick Sanan .    -viewer_binary_skip_options -
81163c55180SPatrick Sanan .    -viewer_binary_skip_header -
81263c55180SPatrick Sanan -    -viewer_binary_mpiio -
8135c6c1daeSBarry Smith 
8145c6c1daeSBarry Smith    Level: beginner
8155c6c1daeSBarry Smith 
8165c6c1daeSBarry Smith    Note:
8175c6c1daeSBarry Smith    This PetscViewer should be destroyed with PetscViewerDestroy().
8185c6c1daeSBarry Smith 
8195c6c1daeSBarry Smith     For reading files, the filename may begin with ftp:// or http:// and/or
8205c6c1daeSBarry Smith     end with .gz; in this case file is brought over and uncompressed.
8215c6c1daeSBarry Smith 
8225c6c1daeSBarry Smith     For creating files, if the file name ends with .gz it is automatically
8235c6c1daeSBarry Smith     compressed when closed.
8245c6c1daeSBarry Smith 
8255c6c1daeSBarry Smith     For writing files it only opens the file on processor 0 in the communicator.
8265c6c1daeSBarry Smith     For readable files it opens the file on all nodes that have the file. If
8275c6c1daeSBarry Smith     node 0 does not have the file it generates an error even if other nodes
8285c6c1daeSBarry Smith     do have the file.
8295c6c1daeSBarry Smith 
8306a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
8315c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
83267918a83SBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscViewerBinaryRead(), PetscViewerBinarySetUseMPIIO(),
83367918a83SBarry Smith           PetscViewerBinaryGetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
8345c6c1daeSBarry Smith @*/
8355c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryOpen(MPI_Comm comm,const char name[],PetscFileMode type,PetscViewer *binv)
8365c6c1daeSBarry Smith {
8375c6c1daeSBarry Smith   PetscErrorCode ierr;
8385c6c1daeSBarry Smith 
8395c6c1daeSBarry Smith   PetscFunctionBegin;
8405c6c1daeSBarry Smith   ierr = PetscViewerCreate(comm,binv);CHKERRQ(ierr);
8415c6c1daeSBarry Smith   ierr = PetscViewerSetType(*binv,PETSCVIEWERBINARY);CHKERRQ(ierr);
8425c6c1daeSBarry Smith   ierr = PetscViewerFileSetMode(*binv,type);CHKERRQ(ierr);
8435c6c1daeSBarry Smith   ierr = PetscViewerFileSetName(*binv,name);CHKERRQ(ierr);
84403a1d59fSDave May   ierr = PetscViewerSetFromOptions(*binv);CHKERRQ(ierr);
8455c6c1daeSBarry Smith   PetscFunctionReturn(0);
8465c6c1daeSBarry Smith }
8475c6c1daeSBarry Smith 
8485c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
849060da220SMatthew G. Knepley static PetscErrorCode PetscViewerBinaryWriteReadMPIIO(PetscViewer viewer,void *data,PetscInt num,PetscInt *count,PetscDataType dtype,PetscBool write)
8505c6c1daeSBarry Smith {
85122a8f86cSLisandro Dalcin   MPI_Comm           comm = PetscObjectComm((PetscObject)viewer);
8525c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
85322a8f86cSLisandro Dalcin   MPI_File           mfdes = vbinary->mfdes;
8545c6c1daeSBarry Smith   PetscErrorCode     ierr;
8555c6c1daeSBarry Smith   MPI_Datatype       mdtype;
85669e10bbaSLisandro Dalcin   PetscMPIInt        rank,cnt;
8575c6c1daeSBarry Smith   MPI_Status         status;
8585c6c1daeSBarry Smith   MPI_Aint           ul,dsize;
8595c6c1daeSBarry Smith 
8605c6c1daeSBarry Smith   PetscFunctionBegin;
86122a8f86cSLisandro Dalcin   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
862060da220SMatthew G. Knepley   ierr = PetscMPIIntCast(num,&cnt);CHKERRQ(ierr);
8635c6c1daeSBarry Smith   ierr = PetscDataTypeToMPIDataType(dtype,&mdtype);CHKERRQ(ierr);
8645c6c1daeSBarry Smith   if (write) {
86569e10bbaSLisandro Dalcin     if (!rank) {
86669e10bbaSLisandro Dalcin       ierr = MPIU_File_write_at(mfdes,vbinary->moff,data,cnt,mdtype,&status);CHKERRQ(ierr);
86769e10bbaSLisandro Dalcin     }
8685c6c1daeSBarry Smith   } else {
86969e10bbaSLisandro Dalcin     if (!rank) {
87069e10bbaSLisandro Dalcin       ierr = MPIU_File_read_at(mfdes,vbinary->moff,data,cnt,mdtype,&status);CHKERRQ(ierr);
8719860990eSLisandro Dalcin       if (cnt > 0) {ierr = MPI_Get_count(&status,mdtype,&cnt);CHKERRQ(ierr);}
8725c6c1daeSBarry Smith     }
87322a8f86cSLisandro Dalcin     ierr = MPI_Bcast(&cnt,1,MPI_INT,0,comm);CHKERRQ(ierr);
87422a8f86cSLisandro Dalcin     ierr = MPI_Bcast(data,cnt,mdtype,0,comm);CHKERRQ(ierr);
87569e10bbaSLisandro Dalcin   }
8765c6c1daeSBarry Smith   ierr = MPI_Type_get_extent(mdtype,&ul,&dsize);CHKERRQ(ierr);
8775c6c1daeSBarry Smith   vbinary->moff += dsize*cnt;
8789860990eSLisandro Dalcin   if (count) *count = cnt;
8795c6c1daeSBarry Smith   PetscFunctionReturn(0);
8805c6c1daeSBarry Smith }
8815c6c1daeSBarry Smith #endif
8825c6c1daeSBarry Smith 
8835c6c1daeSBarry Smith /*@C
8845c6c1daeSBarry Smith    PetscViewerBinaryRead - Reads from a binary file, all processors get the same result
8855c6c1daeSBarry Smith 
886d083f849SBarry Smith    Collective
8875c6c1daeSBarry Smith 
8885c6c1daeSBarry Smith    Input Parameters:
8895c6c1daeSBarry Smith +  viewer - the binary viewer
890907376e6SBarry Smith .  data - location of the data to be written
891060da220SMatthew G. Knepley .  num - number of items of data to read
892907376e6SBarry Smith -  dtype - type of data to read
8935c6c1daeSBarry Smith 
894f8e4bde8SMatthew G. Knepley    Output Parameters:
8950780a867SBarry Smith .  count - number of items of data actually read, or NULL. Unless an error is generated this is always set to the input parameter num.
896f8e4bde8SMatthew G. Knepley 
8975c6c1daeSBarry Smith    Level: beginner
8985c6c1daeSBarry Smith 
8990780a867SBarry Smith    Developer Note: Since count is always set to num it is not clear what purpose the output argument count serves.
9000780a867SBarry Smith 
9016a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
9025c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
9035c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
9045c6c1daeSBarry Smith @*/
905060da220SMatthew G. Knepley PetscErrorCode PetscViewerBinaryRead(PetscViewer viewer,void *data,PetscInt num,PetscInt *count,PetscDataType dtype)
9065c6c1daeSBarry Smith {
9075c6c1daeSBarry Smith   PetscErrorCode     ierr;
90822a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
9095c6c1daeSBarry Smith 
91022a8f86cSLisandro Dalcin   PetscFunctionBegin;
91122a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
91222a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveInt(viewer,num,3);
913c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
91422a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
9155c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
916bc196f7cSDave May   if (vbinary->usempiio) {
917060da220SMatthew G. Knepley     ierr = PetscViewerBinaryWriteReadMPIIO(viewer,data,num,count,dtype,PETSC_FALSE);CHKERRQ(ierr);
9185c6c1daeSBarry Smith   } else {
9195c6c1daeSBarry Smith #endif
9209860990eSLisandro Dalcin     ierr = PetscBinarySynchronizedRead(PetscObjectComm((PetscObject)viewer),vbinary->fdes,data,num,count,dtype);CHKERRQ(ierr);
9215c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
9225c6c1daeSBarry Smith   }
9235c6c1daeSBarry Smith #endif
9245c6c1daeSBarry Smith   PetscFunctionReturn(0);
9255c6c1daeSBarry Smith }
9265c6c1daeSBarry Smith 
9275c6c1daeSBarry Smith /*@C
9285c6c1daeSBarry Smith    PetscViewerBinaryWrite - writes to a binary file, only from the first process
9295c6c1daeSBarry Smith 
930d083f849SBarry Smith    Collective
9315c6c1daeSBarry Smith 
9325c6c1daeSBarry Smith    Input Parameters:
9335c6c1daeSBarry Smith +  viewer - the binary viewer
9345c6c1daeSBarry Smith .  data - location of data
9355824c9d0SPatrick Sanan .  count - number of items of data to write
936*f253e43cSLisandro Dalcin -  dtype - type of data to write
9375c6c1daeSBarry Smith 
9385c6c1daeSBarry Smith    Level: beginner
9395c6c1daeSBarry Smith 
9406a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
9415c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(), PetscDataType
9425c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
9435c6c1daeSBarry Smith @*/
944*f253e43cSLisandro Dalcin PetscErrorCode PetscViewerBinaryWrite(PetscViewer viewer,const void *data,PetscInt count,PetscDataType dtype)
9455c6c1daeSBarry Smith {
9465c6c1daeSBarry Smith   PetscErrorCode     ierr;
94722a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
9485c6c1daeSBarry Smith 
9495c6c1daeSBarry Smith   PetscFunctionBegin;
95022a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
95122a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveInt(viewer,count,3);
952c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
95322a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
9545c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
955bc196f7cSDave May   if (vbinary->usempiio) {
956*f253e43cSLisandro Dalcin     ierr = PetscViewerBinaryWriteReadMPIIO(viewer,(void*)data,count,NULL,dtype,PETSC_TRUE);CHKERRQ(ierr);
9575c6c1daeSBarry Smith   } else {
9585c6c1daeSBarry Smith #endif
959*f253e43cSLisandro Dalcin     ierr = PetscBinarySynchronizedWrite(PetscObjectComm((PetscObject)viewer),vbinary->fdes,data,count,dtype);CHKERRQ(ierr);
9605c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
9615c6c1daeSBarry Smith   }
9625c6c1daeSBarry Smith #endif
9635c6c1daeSBarry Smith   PetscFunctionReturn(0);
9645c6c1daeSBarry Smith }
9655c6c1daeSBarry Smith 
9665c6c1daeSBarry Smith /*@C
9675c6c1daeSBarry Smith    PetscViewerBinaryWriteStringArray - writes to a binary file, only from the first process an array of strings
9685c6c1daeSBarry Smith 
969d083f849SBarry Smith    Collective
9705c6c1daeSBarry Smith 
9715c6c1daeSBarry Smith    Input Parameters:
9725c6c1daeSBarry Smith +  viewer - the binary viewer
9735c6c1daeSBarry Smith -  data - location of the array of strings
9745c6c1daeSBarry Smith 
9755c6c1daeSBarry Smith 
9765c6c1daeSBarry Smith    Level: intermediate
9775c6c1daeSBarry Smith 
97895452b02SPatrick Sanan     Notes:
97995452b02SPatrick Sanan     array of strings is null terminated
9805c6c1daeSBarry Smith 
9816a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
9825c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
9835c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
9845c6c1daeSBarry Smith @*/
98578fbdcc8SBarry Smith PetscErrorCode PetscViewerBinaryWriteStringArray(PetscViewer viewer,const char * const *data)
9865c6c1daeSBarry Smith {
9875c6c1daeSBarry Smith   PetscErrorCode ierr;
9885c6c1daeSBarry Smith   PetscInt       i,n = 0,*sizes;
9895c6c1daeSBarry Smith 
99022a8f86cSLisandro Dalcin   PetscFunctionBegin;
991c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
9925c6c1daeSBarry Smith   /* count number of strings */
9935c6c1daeSBarry Smith   while (data[n++]) ;
9945c6c1daeSBarry Smith   n--;
995854ce69bSBarry Smith   ierr     = PetscMalloc1(n+1,&sizes);CHKERRQ(ierr);
9965c6c1daeSBarry Smith   sizes[0] = n;
9975c6c1daeSBarry Smith   for (i=0; i<n; i++) {
9985c6c1daeSBarry Smith     size_t tmp;
9995c6c1daeSBarry Smith     ierr       = PetscStrlen(data[i],&tmp);CHKERRQ(ierr);
10005c6c1daeSBarry Smith     sizes[i+1] = tmp + 1;   /* size includes space for the null terminator */
10015c6c1daeSBarry Smith   }
1002*f253e43cSLisandro Dalcin   ierr = PetscViewerBinaryWrite(viewer,sizes,n+1,PETSC_INT);CHKERRQ(ierr);
10035c6c1daeSBarry Smith   for (i=0; i<n; i++) {
1004*f253e43cSLisandro Dalcin     ierr = PetscViewerBinaryWrite(viewer,(void*)data[i],sizes[i+1],PETSC_CHAR);CHKERRQ(ierr);
10055c6c1daeSBarry Smith   }
10065c6c1daeSBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
10075c6c1daeSBarry Smith   PetscFunctionReturn(0);
10085c6c1daeSBarry Smith }
10095c6c1daeSBarry Smith 
10105c6c1daeSBarry Smith /*@C
10115c6c1daeSBarry Smith    PetscViewerBinaryReadStringArray - reads a binary file an array of strings
10125c6c1daeSBarry Smith 
1013d083f849SBarry Smith    Collective
10145c6c1daeSBarry Smith 
10155c6c1daeSBarry Smith    Input Parameter:
10165c6c1daeSBarry Smith .  viewer - the binary viewer
10175c6c1daeSBarry Smith 
10185c6c1daeSBarry Smith    Output Parameter:
10195c6c1daeSBarry Smith .  data - location of the array of strings
10205c6c1daeSBarry Smith 
10215c6c1daeSBarry Smith    Level: intermediate
10225c6c1daeSBarry Smith 
102395452b02SPatrick Sanan     Notes:
102495452b02SPatrick Sanan     array of strings is null terminated
10255c6c1daeSBarry Smith 
10266a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
10275c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
10285c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
10295c6c1daeSBarry Smith @*/
10305c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryReadStringArray(PetscViewer viewer,char ***data)
10315c6c1daeSBarry Smith {
10325c6c1daeSBarry Smith   PetscErrorCode ierr;
1033060da220SMatthew G. Knepley   PetscInt       i,n,*sizes,N = 0;
10345c6c1daeSBarry Smith 
103522a8f86cSLisandro Dalcin   PetscFunctionBegin;
1036c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
10375c6c1daeSBarry Smith   /* count number of strings */
1038060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&n,1,NULL,PETSC_INT);CHKERRQ(ierr);
1039785e854fSJed Brown   ierr = PetscMalloc1(n,&sizes);CHKERRQ(ierr);
1040060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,sizes,n,NULL,PETSC_INT);CHKERRQ(ierr);
1041a297a907SKarl Rupp   for (i=0; i<n; i++) N += sizes[i];
1042854ce69bSBarry Smith   ierr = PetscMalloc((n+1)*sizeof(char*) + N*sizeof(char),data);CHKERRQ(ierr);
10435c6c1daeSBarry Smith   (*data)[0] = (char*)((*data) + n + 1);
1044a297a907SKarl Rupp   for (i=1; i<n; i++) (*data)[i] = (*data)[i-1] + sizes[i-1];
1045060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,(*data)[0],N,NULL,PETSC_CHAR);CHKERRQ(ierr);
1046a297a907SKarl Rupp 
104702c9f0b5SLisandro Dalcin   (*data)[n] = NULL;
1048a297a907SKarl Rupp 
10495c6c1daeSBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
10505c6c1daeSBarry Smith   PetscFunctionReturn(0);
10515c6c1daeSBarry Smith }
10525c6c1daeSBarry Smith 
105381f0254dSBarry Smith static PetscErrorCode PetscViewerFileGetName_Binary(PetscViewer viewer,const char **name)
10545c6c1daeSBarry Smith {
10555c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
10565c6c1daeSBarry Smith 
10575c6c1daeSBarry Smith   PetscFunctionBegin;
10585c6c1daeSBarry Smith   *name = vbinary->filename;
10595c6c1daeSBarry Smith   PetscFunctionReturn(0);
10605c6c1daeSBarry Smith }
10615c6c1daeSBarry Smith 
10625c6c1daeSBarry Smith /*@C
10635c6c1daeSBarry Smith      PetscViewerFileGetMode - Gets the type of file to be open
10645c6c1daeSBarry Smith 
10655c6c1daeSBarry Smith     Not Collective
10665c6c1daeSBarry Smith 
10675c6c1daeSBarry Smith   Input Parameter:
1068232ac771SBarry Smith .  viewer - the PetscViewer; must be a PETSCVIEWERBINARY, PETSCVIEWERMATLAB, PETSCVIEWERHDF5, or PETSCVIEWERASCII  PetscViewer
10695c6c1daeSBarry Smith 
10705c6c1daeSBarry Smith   Output Parameter:
10715c6c1daeSBarry Smith .  type - type of file
10725c6c1daeSBarry Smith $    FILE_MODE_WRITE - create new file for binary output
10735c6c1daeSBarry Smith $    FILE_MODE_READ - open existing file for binary input
10745c6c1daeSBarry Smith $    FILE_MODE_APPEND - open existing file for binary output
10755c6c1daeSBarry Smith 
10765c6c1daeSBarry Smith   Level: advanced
10775c6c1daeSBarry Smith 
10785c6c1daeSBarry Smith .seealso: PetscViewerFileSetMode(), PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinaryOpen()
10795c6c1daeSBarry Smith 
10805c6c1daeSBarry Smith @*/
10815c6c1daeSBarry Smith PetscErrorCode PetscViewerFileGetMode(PetscViewer viewer,PetscFileMode *type)
10825c6c1daeSBarry Smith {
10835c6c1daeSBarry Smith   PetscErrorCode ierr;
10845c6c1daeSBarry Smith 
10855c6c1daeSBarry Smith   PetscFunctionBegin;
10865c6c1daeSBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,1);
10875c6c1daeSBarry Smith   PetscValidPointer(type,2);
10885c6c1daeSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerFileGetMode_C",(PetscViewer,PetscFileMode*),(viewer,type));CHKERRQ(ierr);
10895c6c1daeSBarry Smith   PetscFunctionReturn(0);
10905c6c1daeSBarry Smith }
10915c6c1daeSBarry Smith 
10925c6c1daeSBarry Smith /*@
1093bc196f7cSDave May     PetscViewerBinarySetUseMPIIO - Sets a binary viewer to use MPI-IO for reading/writing. Must be called
10945c6c1daeSBarry Smith         before PetscViewerFileSetName()
10955c6c1daeSBarry Smith 
10965c6c1daeSBarry Smith     Logically Collective on PetscViewer
10975c6c1daeSBarry Smith 
10985c6c1daeSBarry Smith     Input Parameters:
1099bc196f7cSDave May +   viewer - the PetscViewer; must be a binary
1100bc196f7cSDave May -   flg - PETSC_TRUE means MPI-IO will be used
11015c6c1daeSBarry Smith 
11025c6c1daeSBarry Smith     Options Database:
11035c6c1daeSBarry Smith     -viewer_binary_mpiio : Flag for using MPI-IO
11045c6c1daeSBarry Smith 
11055c6c1daeSBarry Smith     Level: advanced
11065c6c1daeSBarry Smith 
1107bc196f7cSDave May .seealso: PetscViewerFileSetMode(), PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinaryOpen(),
1108bc196f7cSDave May           PetscViewerBinaryGetUseMPIIO()
11095c6c1daeSBarry Smith 
11105c6c1daeSBarry Smith @*/
1111bc196f7cSDave May PetscErrorCode PetscViewerBinarySetUseMPIIO(PetscViewer viewer,PetscBool flg)
11125c6c1daeSBarry Smith {
11135c6c1daeSBarry Smith   PetscErrorCode ierr;
11145c6c1daeSBarry Smith 
11155c6c1daeSBarry Smith   PetscFunctionBegin;
11165c6c1daeSBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,1);
111722a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveBool(viewer,flg,2);
1118bc196f7cSDave May   ierr = PetscTryMethod(viewer,"PetscViewerBinarySetUseMPIIO_C",(PetscViewer,PetscBool),(viewer,flg));CHKERRQ(ierr);
11195c6c1daeSBarry Smith   PetscFunctionReturn(0);
11205c6c1daeSBarry Smith }
11215c6c1daeSBarry Smith 
11225c6c1daeSBarry Smith /*@C
11235c6c1daeSBarry Smith      PetscViewerFileSetMode - Sets the type of file to be open
11245c6c1daeSBarry Smith 
11255c6c1daeSBarry Smith     Logically Collective on PetscViewer
11265c6c1daeSBarry Smith 
11275c6c1daeSBarry Smith   Input Parameters:
1128232ac771SBarry Smith +  viewer - the PetscViewer; must be a a PETSCVIEWERBINARY, PETSCVIEWERMATLAB, PETSCVIEWERHDF5, or PETSCVIEWERASCII  PetscViewer
11295c6c1daeSBarry Smith -  type - type of file
1130f8859db6SBarry Smith $    FILE_MODE_WRITE - create new file for output
1131f8859db6SBarry Smith $    FILE_MODE_READ - open existing file for input
1132f8859db6SBarry Smith $    FILE_MODE_APPEND - open existing file for output
11335c6c1daeSBarry Smith 
11345c6c1daeSBarry Smith   Level: advanced
11355c6c1daeSBarry Smith 
11365c6c1daeSBarry Smith .seealso: PetscViewerFileSetMode(), PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinaryOpen()
11375c6c1daeSBarry Smith 
11385c6c1daeSBarry Smith @*/
11395c6c1daeSBarry Smith PetscErrorCode PetscViewerFileSetMode(PetscViewer viewer,PetscFileMode type)
11405c6c1daeSBarry Smith {
11415c6c1daeSBarry Smith   PetscErrorCode ierr;
11425c6c1daeSBarry Smith 
11435c6c1daeSBarry Smith   PetscFunctionBegin;
11445c6c1daeSBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,1);
11455c6c1daeSBarry Smith   PetscValidLogicalCollectiveEnum(viewer,type,2);
11465c6c1daeSBarry Smith   ierr = PetscTryMethod(viewer,"PetscViewerFileSetMode_C",(PetscViewer,PetscFileMode),(viewer,type));CHKERRQ(ierr);
11475c6c1daeSBarry Smith   PetscFunctionReturn(0);
11485c6c1daeSBarry Smith }
11495c6c1daeSBarry Smith 
115081f0254dSBarry Smith static PetscErrorCode PetscViewerFileGetMode_Binary(PetscViewer viewer,PetscFileMode *type)
11515c6c1daeSBarry Smith {
11525c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
11535c6c1daeSBarry Smith 
11545c6c1daeSBarry Smith   PetscFunctionBegin;
11555c6c1daeSBarry Smith   *type = vbinary->btype;
11565c6c1daeSBarry Smith   PetscFunctionReturn(0);
11575c6c1daeSBarry Smith }
11585c6c1daeSBarry Smith 
115981f0254dSBarry Smith static PetscErrorCode PetscViewerFileSetMode_Binary(PetscViewer viewer,PetscFileMode type)
11605c6c1daeSBarry Smith {
11615c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
11625c6c1daeSBarry Smith 
11635c6c1daeSBarry Smith   PetscFunctionBegin;
116422a8f86cSLisandro Dalcin   if (viewer->setupcalled && vbinary->btype != type) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ORDER,"Cannot change mode to %s after setup",PetscFileModes[type]);
11655c6c1daeSBarry Smith   vbinary->btype = type;
11665c6c1daeSBarry Smith   PetscFunctionReturn(0);
11675c6c1daeSBarry Smith }
11685c6c1daeSBarry Smith 
116981f0254dSBarry Smith static PetscErrorCode PetscViewerFileSetName_Binary(PetscViewer viewer,const char name[])
1170e0385b85SDave May {
1171e0385b85SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
1172e0385b85SDave May   PetscErrorCode     ierr;
1173e0385b85SDave May 
1174e0385b85SDave May   PetscFunctionBegin;
1175f90597f1SStefano Zampini   if (vbinary->filename) {
1176f90597f1SStefano Zampini     /* gzip can be run after the file with the previous filename has been closed */
1177f90597f1SStefano Zampini     ierr = PetscFree(vbinary->ogzfilename);CHKERRQ(ierr);
1178f90597f1SStefano Zampini     ierr = PetscStrallocpy(vbinary->filename,&vbinary->ogzfilename);CHKERRQ(ierr);
1179f90597f1SStefano Zampini     ierr = PetscFree(vbinary->filename);CHKERRQ(ierr);
1180f90597f1SStefano Zampini     viewer->setupcalled = PETSC_FALSE;
1181f90597f1SStefano Zampini   }
1182e0385b85SDave May   ierr = PetscStrallocpy(name,&vbinary->filename);CHKERRQ(ierr);
1183e0385b85SDave May   PetscFunctionReturn(0);
1184e0385b85SDave May }
11855c6c1daeSBarry Smith /*
11865c6c1daeSBarry Smith         Actually opens the file
11875c6c1daeSBarry Smith */
1188e0877f53SBarry Smith static PetscErrorCode PetscViewerFileSetUp_Binary(PetscViewer viewer)
11895c6c1daeSBarry Smith {
11905c6c1daeSBarry Smith   PetscMPIInt        rank;
11915c6c1daeSBarry Smith   PetscErrorCode     ierr;
11925c6c1daeSBarry Smith   size_t             len;
11935c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
11945c6c1daeSBarry Smith   const char         *fname;
11952259a519SDave May   char               bname[PETSC_MAX_PATH_LEN],*gz;
11965c6c1daeSBarry Smith   PetscBool          found;
11975c6c1daeSBarry Smith   PetscFileMode      type = vbinary->btype;
11985c6c1daeSBarry Smith 
11995c6c1daeSBarry Smith   PetscFunctionBegin;
1200e0385b85SDave May   if (type == (PetscFileMode) -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetMode()");
12012259a519SDave May   if (!vbinary->filename) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetName()");
12025c6c1daeSBarry Smith   ierr = PetscViewerFileClose_Binary(viewer);CHKERRQ(ierr);
12035c6c1daeSBarry Smith 
1204ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
12055c6c1daeSBarry Smith 
12065c6c1daeSBarry Smith   /* if ends in .gz strip that off and note user wants file compressed */
12075c6c1daeSBarry Smith   vbinary->storecompressed = PETSC_FALSE;
12085c6c1daeSBarry Smith   if (!rank && type == FILE_MODE_WRITE) {
12095c6c1daeSBarry Smith     /* remove .gz if it ends library name */
12105c6c1daeSBarry Smith     ierr = PetscStrstr(vbinary->filename,".gz",&gz);CHKERRQ(ierr);
12115c6c1daeSBarry Smith     if (gz) {
12125c6c1daeSBarry Smith       ierr = PetscStrlen(gz,&len);CHKERRQ(ierr);
12135c6c1daeSBarry Smith       if (len == 3) {
12145c6c1daeSBarry Smith         *gz = 0;
12155c6c1daeSBarry Smith         vbinary->storecompressed = PETSC_TRUE;
12165c6c1daeSBarry Smith       }
12175c6c1daeSBarry Smith     }
12185c6c1daeSBarry Smith   }
12195c6c1daeSBarry Smith 
12205c6c1daeSBarry Smith   /* only first processor opens file if writeable */
12215c6c1daeSBarry Smith   if (!rank || type == FILE_MODE_READ) {
12225c6c1daeSBarry Smith 
12235c6c1daeSBarry Smith     if (type == FILE_MODE_READ) {
12245c6c1daeSBarry Smith       /* possibly get the file from remote site or compressed file */
1225ce94432eSBarry Smith       ierr  = PetscFileRetrieve(PetscObjectComm((PetscObject)viewer),vbinary->filename,bname,PETSC_MAX_PATH_LEN,&found);CHKERRQ(ierr);
12265c6c1daeSBarry Smith       fname = bname;
122741c4be4aSVaclav Hapla       /* comm below may be global as all ranks go here for FILE_MODE_READ and output 'found' of PetscFileRetrieve() is valid on all processes */
122841c4be4aSVaclav Hapla       if (!found) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_OPEN,"Cannot locate file: %s on node zero",vbinary->filename);
1229a297a907SKarl Rupp     } else fname = vbinary->filename;
123055819941SStefano Zampini     if (type == FILE_MODE_APPEND) { /* check if asked to append to a non-existing file */
123155819941SStefano Zampini       ierr = PetscTestFile(fname,'\0',&found);CHKERRQ(ierr);
123255819941SStefano Zampini     }
12335c6c1daeSBarry Smith 
12345c6c1daeSBarry Smith #if defined(PETSC_HAVE_O_BINARY)
123555819941SStefano Zampini     if (type == FILE_MODE_WRITE || (type == FILE_MODE_APPEND && !found) ) {
12365c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_WRONLY|O_CREAT|O_TRUNC|O_BINARY,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file %s for writing",fname);
12375c6c1daeSBarry Smith     } else if (type == FILE_MODE_READ && fname) {
12385c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_RDONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for reading",fname);
12395c6c1daeSBarry Smith     } else if (type == FILE_MODE_APPEND) {
12405c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_WRONLY|O_APPEND|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for writing",fname);
12415c6c1daeSBarry Smith     } else if (fname) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown file type");
12425c6c1daeSBarry Smith #else
124355819941SStefano Zampini     if (type == FILE_MODE_WRITE || (type == FILE_MODE_APPEND && !found) ) {
12445c6c1daeSBarry Smith       if ((vbinary->fdes = creat(fname,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file %s for writing",fname);
12455c6c1daeSBarry Smith     } else if (type == FILE_MODE_READ && fname) {
12465c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_RDONLY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for reading",fname);
12475c6c1daeSBarry Smith     } else if (type == FILE_MODE_APPEND) {
12485c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_WRONLY|O_APPEND,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for writing",fname);
12495c6c1daeSBarry Smith     } else if (fname) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown file type");
12505c6c1daeSBarry Smith #endif
12515c6c1daeSBarry Smith   } else vbinary->fdes = -1;
12525c6c1daeSBarry Smith 
12535c6c1daeSBarry Smith   /*
12545c6c1daeSBarry Smith       try to open info file: all processors open this file if read only
12555c6c1daeSBarry Smith   */
12565c6c1daeSBarry Smith   if (!vbinary->skipinfo && (!rank || type == FILE_MODE_READ)) {
12575c6c1daeSBarry Smith     char infoname[PETSC_MAX_PATH_LEN],iname[PETSC_MAX_PATH_LEN];
12585c6c1daeSBarry Smith 
1259a126751eSBarry Smith     ierr = PetscStrncpy(infoname,vbinary->filename,sizeof(infoname));CHKERRQ(ierr);
12605c6c1daeSBarry Smith     /* remove .gz if it ends library name */
12615c6c1daeSBarry Smith     ierr = PetscStrstr(infoname,".gz",&gz);CHKERRQ(ierr);
12625c6c1daeSBarry Smith     if (gz) {
12635c6c1daeSBarry Smith       ierr = PetscStrlen(gz,&len);CHKERRQ(ierr);
1264a297a907SKarl Rupp       if (len == 3) *gz = 0;
12655c6c1daeSBarry Smith     }
12665c6c1daeSBarry Smith 
1267a126751eSBarry Smith     ierr = PetscStrlcat(infoname,".info",sizeof(infoname));CHKERRQ(ierr);
12685c6c1daeSBarry Smith     ierr = PetscFixFilename(infoname,iname);CHKERRQ(ierr);
12695c6c1daeSBarry Smith     if (type == FILE_MODE_READ) {
1270ce94432eSBarry Smith       ierr = PetscFileRetrieve(PetscObjectComm((PetscObject)viewer),iname,infoname,PETSC_MAX_PATH_LEN,&found);CHKERRQ(ierr);
12711f5e1f59SVaclav Hapla       if (found) {
1272c5929fdfSBarry Smith         ierr = PetscOptionsInsertFile(PetscObjectComm((PetscObject)viewer),((PetscObject)viewer)->options,infoname,PETSC_FALSE);CHKERRQ(ierr);
12731f5e1f59SVaclav Hapla       }
12745c6c1daeSBarry Smith     } else {
12755c6c1daeSBarry Smith       vbinary->fdes_info = fopen(infoname,"w");
12765c6c1daeSBarry Smith       if (!vbinary->fdes_info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open .info file %s for writing",infoname);
12775c6c1daeSBarry Smith     }
12785c6c1daeSBarry Smith   }
12795c6c1daeSBarry Smith #if defined(PETSC_USE_LOG)
1280e0385b85SDave May   PetscLogObjectState((PetscObject)viewer,"File: %s",vbinary->filename);
12815c6c1daeSBarry Smith #endif
12825c6c1daeSBarry Smith   PetscFunctionReturn(0);
12835c6c1daeSBarry Smith }
12845c6c1daeSBarry Smith 
12855c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
1286e0385b85SDave May static PetscErrorCode PetscViewerFileSetUp_BinaryMPIIO(PetscViewer viewer)
12875c6c1daeSBarry Smith {
12885c6c1daeSBarry Smith   PetscMPIInt        rank;
12895c6c1daeSBarry Smith   PetscErrorCode     ierr;
12905c6c1daeSBarry Smith   size_t             len;
12915c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
12922259a519SDave May   char               *gz;
12935c6c1daeSBarry Smith   PetscBool          found;
12945c6c1daeSBarry Smith   PetscFileMode      type = vbinary->btype;
1295e8a65b7dSLisandro Dalcin   int                amode;
12965c6c1daeSBarry Smith 
12975c6c1daeSBarry Smith   PetscFunctionBegin;
1298e0385b85SDave May   if (type == (PetscFileMode) -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetMode()");
12992259a519SDave May   if (!vbinary->filename) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetName()");
1300e0385b85SDave May   ierr = PetscViewerFileClose_BinaryMPIIO(viewer);CHKERRQ(ierr);
13015c6c1daeSBarry Smith 
1302a297a907SKarl Rupp   vbinary->storecompressed = PETSC_FALSE;
13035c6c1daeSBarry Smith 
1304e8a65b7dSLisandro Dalcin   switch (type) {
1305e8a65b7dSLisandro Dalcin   case FILE_MODE_READ:   amode = MPI_MODE_RDONLY; break;
1306e8a65b7dSLisandro Dalcin   case FILE_MODE_WRITE:  amode = MPI_MODE_WRONLY | MPI_MODE_CREATE; break;
130722a8f86cSLisandro Dalcin   case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY | MPI_MODE_CREATE | MPI_MODE_APPEND; break;
1308e8a65b7dSLisandro Dalcin   default: SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Unsupported file mode %s",PetscFileModes[type]);
13095c6c1daeSBarry Smith   }
1310e8a65b7dSLisandro Dalcin   ierr = MPI_File_open(PetscObjectComm((PetscObject)viewer),vbinary->filename,amode,MPI_INFO_NULL,&vbinary->mfdes);CHKERRQ(ierr);
131122a8f86cSLisandro Dalcin   /*
131222a8f86cSLisandro Dalcin       The MPI standard does not have MPI_MODE_TRUNCATE. We emulate this behavior by setting the file size to zero.
131322a8f86cSLisandro Dalcin   */
131422a8f86cSLisandro Dalcin   if (type == FILE_MODE_WRITE) {ierr = MPI_File_set_size(vbinary->mfdes,0);CHKERRQ(ierr);}
131522a8f86cSLisandro Dalcin   /*
131622a8f86cSLisandro Dalcin       Initially, all processes view the file as a linear byte stream. Therefore, for files opened with MPI_MODE_APPEND,
131722a8f86cSLisandro Dalcin       MPI_File_get_position[_shared](fh, &offset) returns the absolute byte position at the end of file.
131822a8f86cSLisandro Dalcin       Otherwise, we would need to call MPI_File_get_byte_offset(fh, offset, &byte_offset) to convert
131922a8f86cSLisandro Dalcin       the offset in etype units to an absolute byte position.
132022a8f86cSLisandro Dalcin    */
132122a8f86cSLisandro Dalcin   if (type == FILE_MODE_APPEND) {ierr = MPI_File_get_position(vbinary->mfdes,&vbinary->moff);CHKERRQ(ierr);}
13225c6c1daeSBarry Smith 
13235c6c1daeSBarry Smith   /*
13245c6c1daeSBarry Smith       try to open info file: all processors open this file if read only
13255c6c1daeSBarry Smith 
1326bebe2cf6SSatish Balay       Below is identical code to the code for Binary above, should be put in separate routine
13275c6c1daeSBarry Smith   */
1328e8a65b7dSLisandro Dalcin   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
13295c6c1daeSBarry Smith   if (!vbinary->skipinfo && (!rank || type == FILE_MODE_READ)) {
13305c6c1daeSBarry Smith     char infoname[PETSC_MAX_PATH_LEN],iname[PETSC_MAX_PATH_LEN];
13315c6c1daeSBarry Smith 
1332a126751eSBarry Smith     ierr = PetscStrncpy(infoname,vbinary->filename,sizeof(infoname));CHKERRQ(ierr);
13335c6c1daeSBarry Smith     /* remove .gz if it ends library name */
13345c6c1daeSBarry Smith     ierr = PetscStrstr(infoname,".gz",&gz);CHKERRQ(ierr);
13355c6c1daeSBarry Smith     if (gz) {
13365c6c1daeSBarry Smith       ierr = PetscStrlen(gz,&len);CHKERRQ(ierr);
1337a297a907SKarl Rupp       if (len == 3) *gz = 0;
13385c6c1daeSBarry Smith     }
13395c6c1daeSBarry Smith 
1340a126751eSBarry Smith     ierr = PetscStrlcat(infoname,".info",sizeof(infoname));CHKERRQ(ierr);
13415c6c1daeSBarry Smith     ierr = PetscFixFilename(infoname,iname);CHKERRQ(ierr);
13425c6c1daeSBarry Smith     if (type == FILE_MODE_READ) {
1343ce94432eSBarry Smith       ierr = PetscFileRetrieve(PetscObjectComm((PetscObject)viewer),iname,infoname,PETSC_MAX_PATH_LEN,&found);CHKERRQ(ierr);
1344c5929fdfSBarry Smith       ierr = PetscOptionsInsertFile(PetscObjectComm((PetscObject)viewer),((PetscObject)viewer)->options,infoname,PETSC_FALSE);CHKERRQ(ierr);
13455c6c1daeSBarry Smith     } else {
13465c6c1daeSBarry Smith       vbinary->fdes_info = fopen(infoname,"w");
13475c6c1daeSBarry Smith       if (!vbinary->fdes_info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open .info file %s for writing",infoname);
13485c6c1daeSBarry Smith     }
13495c6c1daeSBarry Smith   }
13505c6c1daeSBarry Smith #if defined(PETSC_USE_LOG)
1351e0385b85SDave May   PetscLogObjectState((PetscObject)viewer,"File: %s",vbinary->filename);
13525c6c1daeSBarry Smith #endif
13535c6c1daeSBarry Smith   PetscFunctionReturn(0);
13545c6c1daeSBarry Smith }
13555c6c1daeSBarry Smith 
135681f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetUseMPIIO_Binary(PetscViewer viewer,PetscBool flg)
13575c6c1daeSBarry Smith {
13585c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
13595c6c1daeSBarry Smith   PetscFunctionBegin;
136022a8f86cSLisandro Dalcin   if (viewer->setupcalled && vbinary->usempiio != flg) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ORDER,"Cannot change MPIIO to %s after setup",PetscBools[flg]);
1361bc196f7cSDave May   vbinary->usempiio = flg;
13625c6c1daeSBarry Smith   PetscFunctionReturn(0);
13635c6c1daeSBarry Smith }
13645c6c1daeSBarry Smith #endif
13655c6c1daeSBarry Smith 
136681f0254dSBarry Smith static PetscErrorCode PetscViewerView_Binary(PetscViewer v,PetscViewer viewer)
13672bf49c77SBarry Smith {
13682bf49c77SBarry Smith   PetscErrorCode     ierr;
1369cb6ad94fSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
1370cb6ad94fSLisandro Dalcin   const char         *fname = vbinary->filename ? vbinary->filename : "not yet set";
1371cb6ad94fSLisandro Dalcin   const char         *fmode = vbinary->btype != (PetscFileMode) -1 ? PetscFileModes[vbinary->btype] : "not yet set";
1372cb6ad94fSLisandro Dalcin   PetscBool          usempiio;
13732bf49c77SBarry Smith 
13742bf49c77SBarry Smith   PetscFunctionBegin;
1375cb6ad94fSLisandro Dalcin   ierr = PetscViewerBinaryGetUseMPIIO(v,&usempiio);CHKERRQ(ierr);
1376cb6ad94fSLisandro Dalcin   ierr = PetscViewerASCIIPrintf(viewer,"Filename: %s\n",fname);CHKERRQ(ierr);
1377cb6ad94fSLisandro Dalcin   ierr = PetscViewerASCIIPrintf(viewer,"Mode: %s (%s)\n",fmode,usempiio ? "mpiio" : "stdio");CHKERRQ(ierr);
13782bf49c77SBarry Smith   PetscFunctionReturn(0);
13792bf49c77SBarry Smith }
13802bf49c77SBarry Smith 
138103a1d59fSDave May static PetscErrorCode PetscViewerSetUp_Binary(PetscViewer v)
138203a1d59fSDave May {
138303a1d59fSDave May   PetscErrorCode     ierr;
138403a1d59fSDave May   PetscViewer_Binary *binary = (PetscViewer_Binary*)v->data;
1385e0385b85SDave May 
138603a1d59fSDave May   PetscFunctionBegin;
1387da07bb01SDave May   if (!binary->setfromoptionscalled) { ierr = PetscViewerSetFromOptions(v);CHKERRQ(ierr); }
138803a1d59fSDave May 
1389e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
1390bc196f7cSDave May   if (binary->usempiio) {
1391e0385b85SDave May     ierr = PetscViewerFileSetUp_BinaryMPIIO(v);CHKERRQ(ierr);
1392e0385b85SDave May   } else {
1393e0385b85SDave May #endif
1394e0385b85SDave May     ierr = PetscViewerFileSetUp_Binary(v);CHKERRQ(ierr);
1395e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
1396e0385b85SDave May   }
1397e0385b85SDave May #endif
139803a1d59fSDave May   PetscFunctionReturn(0);
139903a1d59fSDave May }
140003a1d59fSDave May 
140122a8f86cSLisandro Dalcin static PetscErrorCode PetscViewerSetFromOptions_Binary(PetscOptionItems *PetscOptionsObject,PetscViewer viewer)
140203a1d59fSDave May {
140303a1d59fSDave May   PetscErrorCode     ierr;
140422a8f86cSLisandro Dalcin   PetscViewer_Binary *binary = (PetscViewer_Binary*)viewer->data;
1405d22fd6bcSDave May   char               defaultname[PETSC_MAX_PATH_LEN];
140603a1d59fSDave May   PetscBool          flg;
1407e0385b85SDave May 
140803a1d59fSDave May   PetscFunctionBegin;
140922a8f86cSLisandro Dalcin   if (viewer->setupcalled) PetscFunctionReturn(0);
141003a1d59fSDave May   ierr = PetscOptionsHead(PetscOptionsObject,"Binary PetscViewer Options");CHKERRQ(ierr);
1411d22fd6bcSDave May   ierr = PetscSNPrintf(defaultname,PETSC_MAX_PATH_LEN-1,"binaryoutput");CHKERRQ(ierr);
1412d22fd6bcSDave May   ierr = PetscOptionsString("-viewer_binary_filename","Specify filename","PetscViewerFileSetName",defaultname,defaultname,PETSC_MAX_PATH_LEN-1,&flg);CHKERRQ(ierr);
141322a8f86cSLisandro Dalcin   if (flg) { ierr = PetscViewerFileSetName_Binary(viewer,defaultname);CHKERRQ(ierr); }
141422a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_skip_info","Skip writing/reading .info file","PetscViewerBinarySetSkipInfo",binary->skipinfo,&binary->skipinfo,NULL);CHKERRQ(ierr);
141522a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_skip_options","Skip parsing vec load options","PetscViewerBinarySetSkipOptions",binary->skipoptions,&binary->skipoptions,NULL);CHKERRQ(ierr);
141622a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_skip_header","Skip writing/reading header information","PetscViewerBinarySetSkipHeader",binary->skipheader,&binary->skipheader,NULL);CHKERRQ(ierr);
141703a1d59fSDave May #if defined(PETSC_HAVE_MPIIO)
141822a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_mpiio","Use MPI-IO functionality to write/read binary file","PetscViewerBinarySetUseMPIIO",binary->usempiio,&binary->usempiio,NULL);CHKERRQ(ierr);
141934a9cc2cSBarry Smith #elif defined(PETSC_HAVE_MPIUNI)
142034a9cc2cSBarry Smith   ierr = PetscOptionsBool("-viewer_binary_mpiio","Use MPI-IO functionality to write/read binary file","PetscViewerBinarySetUseMPIIO",PETSC_FALSE,NULL,NULL);CHKERRQ(ierr);
142103a1d59fSDave May #endif
142203a1d59fSDave May   ierr = PetscOptionsTail();CHKERRQ(ierr);
1423bc196f7cSDave May   binary->setfromoptionscalled = PETSC_TRUE;
142403a1d59fSDave May   PetscFunctionReturn(0);
142503a1d59fSDave May }
142603a1d59fSDave May 
14278556b5ebSBarry Smith /*MC
14288556b5ebSBarry Smith    PETSCVIEWERBINARY - A viewer that saves to binary files
14298556b5ebSBarry Smith 
14308556b5ebSBarry Smith 
14318556b5ebSBarry Smith .seealso:  PetscViewerBinaryOpen(), PETSC_VIEWER_STDOUT_(),PETSC_VIEWER_STDOUT_SELF, PETSC_VIEWER_STDOUT_WORLD, PetscViewerCreate(), PetscViewerASCIIOpen(),
14328556b5ebSBarry Smith            PetscViewerMatlabOpen(), VecView(), DMView(), PetscViewerMatlabPutArray(), PETSCVIEWERASCII, PETSCVIEWERMATLAB, PETSCVIEWERDRAW,
143367918a83SBarry Smith            PetscViewerFileSetName(), PetscViewerFileSetMode(), PetscViewerFormat, PetscViewerType, PetscViewerSetType(),
143467918a83SBarry Smith            PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO()
14358556b5ebSBarry Smith 
14361b266c99SBarry Smith   Level: beginner
14371b266c99SBarry Smith 
14388556b5ebSBarry Smith M*/
14398556b5ebSBarry Smith 
14408cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerCreate_Binary(PetscViewer v)
14415c6c1daeSBarry Smith {
14425c6c1daeSBarry Smith   PetscErrorCode     ierr;
14435c6c1daeSBarry Smith   PetscViewer_Binary *vbinary;
14445c6c1daeSBarry Smith 
14455c6c1daeSBarry Smith   PetscFunctionBegin;
1446b00a9115SJed Brown   ierr                     = PetscNewLog(v,&vbinary);CHKERRQ(ierr);
14475c6c1daeSBarry Smith   v->data                  = (void*)vbinary;
144803a1d59fSDave May   v->ops->setfromoptions   = PetscViewerSetFromOptions_Binary;
14495c6c1daeSBarry Smith   v->ops->destroy          = PetscViewerDestroy_Binary;
14502bf49c77SBarry Smith   v->ops->view             = PetscViewerView_Binary;
1451c98fd787SBarry Smith   v->ops->setup            = PetscViewerSetUp_Binary;
1452c98fd787SBarry Smith   v->ops->flush            = NULL;
14535c6c1daeSBarry Smith   vbinary->fdes            = 0;
1454e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
1455e8a65b7dSLisandro Dalcin   vbinary->mfdes           = MPI_FILE_NULL;
1456e8a65b7dSLisandro Dalcin   vbinary->mfsub           = MPI_FILE_NULL;
1457e8a65b7dSLisandro Dalcin #endif
145802c9f0b5SLisandro Dalcin   vbinary->fdes_info       = NULL;
14595c6c1daeSBarry Smith   vbinary->skipinfo        = PETSC_FALSE;
14605c6c1daeSBarry Smith   vbinary->skipoptions     = PETSC_TRUE;
14615c6c1daeSBarry Smith   vbinary->skipheader      = PETSC_FALSE;
1462da07bb01SDave May   vbinary->setfromoptionscalled = PETSC_FALSE;
1463559f443fSBarry Smith   v->ops->getsubviewer     = PetscViewerGetSubViewer_Binary;
1464559f443fSBarry Smith   v->ops->restoresubviewer = PetscViewerRestoreSubViewer_Binary;
14651d641e7bSMichael Lange   v->ops->read             = PetscViewerBinaryRead;
14665c6c1daeSBarry Smith   vbinary->btype           = (PetscFileMode) -1;
14675c6c1daeSBarry Smith   vbinary->storecompressed = PETSC_FALSE;
1468f90597f1SStefano Zampini   vbinary->filename        = NULL;
1469f90597f1SStefano Zampini   vbinary->ogzfilename     = NULL;
14705c6c1daeSBarry Smith   vbinary->flowcontrol     = 256; /* seems a good number for Cray XT-5 */
14715c6c1daeSBarry Smith 
1472bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetFlowControl_C",PetscViewerBinaryGetFlowControl_Binary);CHKERRQ(ierr);
1473bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetFlowControl_C",PetscViewerBinarySetFlowControl_Binary);CHKERRQ(ierr);
1474bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipHeader_C",PetscViewerBinarySetSkipHeader_Binary);CHKERRQ(ierr);
1475bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipHeader_C",PetscViewerBinaryGetSkipHeader_Binary);CHKERRQ(ierr);
1476807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipOptions_C",PetscViewerBinaryGetSkipOptions_Binary);CHKERRQ(ierr);
1477807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipOptions_C",PetscViewerBinarySetSkipOptions_Binary);CHKERRQ(ierr);
1478807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipInfo_C",PetscViewerBinaryGetSkipInfo_Binary);CHKERRQ(ierr);
1479807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipInfo_C",PetscViewerBinarySetSkipInfo_Binary);CHKERRQ(ierr);
1480bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetInfoPointer_C",PetscViewerBinaryGetInfoPointer_Binary);CHKERRQ(ierr);
1481bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetName_C",PetscViewerFileSetName_Binary);CHKERRQ(ierr);
1482bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetMode_C",PetscViewerFileSetMode_Binary);CHKERRQ(ierr);
1483bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetMode_C",PetscViewerFileGetMode_Binary);CHKERRQ(ierr);
1484bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetName_C",PetscViewerFileGetName_Binary);CHKERRQ(ierr);
14855c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
1486bc196f7cSDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetUseMPIIO_C",PetscViewerBinaryGetUseMPIIO_Binary);CHKERRQ(ierr);
1487bc196f7cSDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetUseMPIIO_C",PetscViewerBinarySetUseMPIIO_Binary);CHKERRQ(ierr);
14885c6c1daeSBarry Smith #endif
14895c6c1daeSBarry Smith   PetscFunctionReturn(0);
14905c6c1daeSBarry Smith }
14915c6c1daeSBarry Smith 
14925c6c1daeSBarry Smith /* ---------------------------------------------------------------------*/
14935c6c1daeSBarry Smith /*
14945c6c1daeSBarry Smith     The variable Petsc_Viewer_Binary_keyval is used to indicate an MPI attribute that
14955c6c1daeSBarry Smith   is attached to a communicator, in this case the attribute is a PetscViewer.
14965c6c1daeSBarry Smith */
1497d4c7638eSBarry Smith PetscMPIInt Petsc_Viewer_Binary_keyval = MPI_KEYVAL_INVALID;
14985c6c1daeSBarry Smith 
14995c6c1daeSBarry Smith /*@C
15005c6c1daeSBarry Smith      PETSC_VIEWER_BINARY_ - Creates a binary PetscViewer shared by all processors
15015c6c1daeSBarry Smith                      in a communicator.
15025c6c1daeSBarry Smith 
1503d083f849SBarry Smith      Collective
15045c6c1daeSBarry Smith 
15055c6c1daeSBarry Smith      Input Parameter:
15065c6c1daeSBarry Smith .    comm - the MPI communicator to share the binary PetscViewer
15075c6c1daeSBarry Smith 
15085c6c1daeSBarry Smith      Level: intermediate
15095c6c1daeSBarry Smith 
15105c6c1daeSBarry Smith    Options Database Keys:
15115c6c1daeSBarry Smith +    -viewer_binary_filename <name>
15125c6c1daeSBarry Smith .    -viewer_binary_skip_info
1513a2d7db39SDave May .    -viewer_binary_skip_options
1514a2d7db39SDave May .    -viewer_binary_skip_header
1515a2d7db39SDave May -    -viewer_binary_mpiio
15165c6c1daeSBarry Smith 
15175c6c1daeSBarry Smith    Environmental variables:
15185c6c1daeSBarry Smith -   PETSC_VIEWER_BINARY_FILENAME
15195c6c1daeSBarry Smith 
15205c6c1daeSBarry Smith      Notes:
15215c6c1daeSBarry Smith      Unlike almost all other PETSc routines, PETSC_VIEWER_BINARY_ does not return
15225c6c1daeSBarry Smith      an error code.  The binary PetscViewer is usually used in the form
15235c6c1daeSBarry Smith $       XXXView(XXX object,PETSC_VIEWER_BINARY_(comm));
15245c6c1daeSBarry Smith 
15255c6c1daeSBarry Smith .seealso: PETSC_VIEWER_BINARY_WORLD, PETSC_VIEWER_BINARY_SELF, PetscViewerBinaryOpen(), PetscViewerCreate(),
15265c6c1daeSBarry Smith           PetscViewerDestroy()
15275c6c1daeSBarry Smith @*/
15285c6c1daeSBarry Smith PetscViewer PETSC_VIEWER_BINARY_(MPI_Comm comm)
15295c6c1daeSBarry Smith {
15305c6c1daeSBarry Smith   PetscErrorCode ierr;
15315c6c1daeSBarry Smith   PetscBool      flg;
15325c6c1daeSBarry Smith   PetscViewer    viewer;
15335c6c1daeSBarry Smith   char           fname[PETSC_MAX_PATH_LEN];
15345c6c1daeSBarry Smith   MPI_Comm       ncomm;
15355c6c1daeSBarry Smith 
15365c6c1daeSBarry Smith   PetscFunctionBegin;
153702c9f0b5SLisandro Dalcin   ierr = PetscCommDuplicate(comm,&ncomm,NULL);if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15385c6c1daeSBarry Smith   if (Petsc_Viewer_Binary_keyval == MPI_KEYVAL_INVALID) {
153902c9f0b5SLisandro Dalcin     ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,MPI_COMM_NULL_DELETE_FN,&Petsc_Viewer_Binary_keyval,NULL);
154002c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15415c6c1daeSBarry Smith   }
154247435625SJed Brown   ierr = MPI_Comm_get_attr(ncomm,Petsc_Viewer_Binary_keyval,(void**)&viewer,(int*)&flg);
154302c9f0b5SLisandro Dalcin   if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15445c6c1daeSBarry Smith   if (!flg) { /* PetscViewer not yet created */
15455c6c1daeSBarry Smith     ierr = PetscOptionsGetenv(ncomm,"PETSC_VIEWER_BINARY_FILENAME",fname,PETSC_MAX_PATH_LEN,&flg);
154602c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15475c6c1daeSBarry Smith     if (!flg) {
15485c6c1daeSBarry Smith       ierr = PetscStrcpy(fname,"binaryoutput");
154902c9f0b5SLisandro Dalcin       if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15505c6c1daeSBarry Smith     }
15515c6c1daeSBarry Smith     ierr = PetscViewerBinaryOpen(ncomm,fname,FILE_MODE_WRITE,&viewer);
155202c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15535c6c1daeSBarry Smith     ierr = PetscObjectRegisterDestroy((PetscObject)viewer);
155402c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
155547435625SJed Brown     ierr = MPI_Comm_set_attr(ncomm,Petsc_Viewer_Binary_keyval,(void*)viewer);
155602c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15575c6c1daeSBarry Smith   }
15585c6c1daeSBarry Smith   ierr = PetscCommDestroy(&ncomm);
155902c9f0b5SLisandro Dalcin   if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15605c6c1daeSBarry Smith   PetscFunctionReturn(viewer);
15615c6c1daeSBarry Smith }
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