1 2 /* 3 Code that allows one to set the error handlers 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscviewer.h> 7 8 typedef struct _EH *EH; 9 struct _EH { 10 PetscErrorCode (*handler)(MPI_Comm,int,const char*,const char*,PetscErrorCode,PetscErrorType,const char*,void*); 11 void *ctx; 12 EH previous; 13 }; 14 15 static EH eh = 0; 16 17 /*@C 18 PetscEmacsClientErrorHandler - Error handler that uses the emacsclient program to 19 load the file where the error occured. Then calls the "previous" error handler. 20 21 Not Collective 22 23 Input Parameters: 24 + comm - communicator over which error occured 25 . line - the line number of the error (indicated by __LINE__) 26 . file - the file in which the error was detected (indicated by __FILE__) 27 . mess - an error text string, usually just printed to the screen 28 . n - the generic error number 29 . p - specific error number 30 - ctx - error handler context 31 32 Options Database Key: 33 . -on_error_emacs <machinename> 34 35 Level: developer 36 37 Notes: 38 You must put (server-start) in your .emacs file for the emacsclient software to work 39 40 Most users need not directly employ this routine and the other error 41 handlers, but can instead use the simplified interface SETERRQ, which has 42 the calling sequence 43 $ SETERRQ(PETSC_COMM_SELF,number,p,mess) 44 45 Notes for experienced users: 46 Use PetscPushErrorHandler() to set the desired error handler. 47 48 Developer Note: 49 Since this is an error handler it cannot call CHKERRQ(); thus we just return if an error is detected. 50 51 52 .seealso: PetscPushErrorHandler(), PetscAttachDebuggerErrorHandler(), 53 PetscAbortErrorHandler() 54 @*/ 55 PetscErrorCode PetscEmacsClientErrorHandler(MPI_Comm comm,int line,const char *fun,const char *file,PetscErrorCode n,PetscErrorType p,const char *mess,void *ctx) 56 { 57 PetscErrorCode ierr; 58 char command[PETSC_MAX_PATH_LEN]; 59 const char *pdir; 60 FILE *fp; 61 62 PetscFunctionBegin; 63 ierr = PetscGetPetscDir(&pdir);if (ierr) PetscFunctionReturn(ierr); 64 sprintf(command,"cd %s; emacsclient --no-wait +%d %s\n",pdir,line,file); 65 #if defined(PETSC_HAVE_POPEN) 66 ierr = PetscPOpen(MPI_COMM_WORLD,(char*)ctx,command,"r",&fp);if (ierr) PetscFunctionReturn(ierr); 67 ierr = PetscPClose(MPI_COMM_WORLD,fp);if (ierr) PetscFunctionReturn(ierr); 68 #else 69 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP_SYS,"Cannot run external programs on this machine"); 70 #endif 71 ierr = PetscPopErrorHandler();if (ierr) PetscFunctionReturn(ierr); /* remove this handler from the stack of handlers */ 72 if (!eh) { 73 ierr = PetscTraceBackErrorHandler(comm,line,fun,file,n,p,mess,0);if (ierr) PetscFunctionReturn(ierr); 74 } else { 75 ierr = (*eh->handler)(comm,line,fun,file,n,p,mess,eh->ctx);if (ierr) PetscFunctionReturn(ierr); 76 } 77 PetscFunctionReturn(ierr); 78 } 79 80 /*@C 81 PetscPushErrorHandler - Sets a routine to be called on detection of errors. 82 83 Not Collective 84 85 Input Parameters: 86 + handler - error handler routine 87 - ctx - optional handler context that contains information needed by the handler (for 88 example file pointers for error messages etc.) 89 90 Calling sequence of handler: 91 $ int handler(MPI_Comm comm,int line,char *func,char *file,PetscErrorCode n,int p,char *mess,void *ctx); 92 93 + comm - communicator over which error occured 94 . line - the line number of the error (indicated by __LINE__) 95 . file - the file in which the error was detected (indicated by __FILE__) 96 . n - the generic error number (see list defined in include/petscerror.h) 97 . p - PETSC_ERROR_INITIAL if error just detected, otherwise PETSC_ERROR_REPEAT 98 . mess - an error text string, usually just printed to the screen 99 - ctx - the error handler context 100 101 Options Database Keys: 102 + -on_error_attach_debugger <noxterm,gdb or dbx> 103 - -on_error_abort 104 105 Level: intermediate 106 107 Notes: 108 The currently available PETSc error handlers include PetscTraceBackErrorHandler(), 109 PetscAttachDebuggerErrorHandler(), PetscAbortErrorHandler(), and PetscMPIAbortErrorHandler(), PetscReturnErrorHandler(). 110 111 Fortran Notes: 112 You can only push one error handler from Fortran before poping it. 113 114 .seealso: PetscPopErrorHandler(), PetscAttachDebuggerErrorHandler(), PetscAbortErrorHandler(), PetscTraceBackErrorHandler(), PetscPushSignalHandler() 115 116 @*/ 117 PetscErrorCode PetscPushErrorHandler(PetscErrorCode (*handler)(MPI_Comm comm,int,const char*,const char*,PetscErrorCode,PetscErrorType,const char*,void*),void *ctx) 118 { 119 EH neweh; 120 PetscErrorCode ierr; 121 122 PetscFunctionBegin; 123 ierr = PetscNew(&neweh);CHKERRQ(ierr); 124 if (eh) neweh->previous = eh; 125 else neweh->previous = 0; 126 neweh->handler = handler; 127 neweh->ctx = ctx; 128 eh = neweh; 129 PetscFunctionReturn(0); 130 } 131 132 /*@ 133 PetscPopErrorHandler - Removes the latest error handler that was 134 pushed with PetscPushErrorHandler(). 135 136 Not Collective 137 138 Level: intermediate 139 140 .seealso: PetscPushErrorHandler() 141 @*/ 142 PetscErrorCode PetscPopErrorHandler(void) 143 { 144 EH tmp; 145 PetscErrorCode ierr; 146 147 PetscFunctionBegin; 148 if (!eh) PetscFunctionReturn(0); 149 tmp = eh; 150 eh = eh->previous; 151 ierr = PetscFree(tmp);CHKERRQ(ierr); 152 PetscFunctionReturn(0); 153 } 154 155 /*@C 156 PetscReturnErrorHandler - Error handler that causes a return to the current 157 level. 158 159 Not Collective 160 161 Input Parameters: 162 + comm - communicator over which error occurred 163 . line - the line number of the error (indicated by __LINE__) 164 . file - the file in which the error was detected (indicated by __FILE__) 165 . mess - an error text string, usually just printed to the screen 166 . n - the generic error number 167 . p - specific error number 168 - ctx - error handler context 169 170 Level: developer 171 172 Notes: 173 Most users need not directly employ this routine and the other error 174 handlers, but can instead use the simplified interface SETERRQ, which has 175 the calling sequence 176 $ SETERRQ(comm,number,mess) 177 178 Notes for experienced users: 179 This routine is good for catching errors such as zero pivots in preconditioners 180 or breakdown of iterative methods. It is not appropriate for memory violations 181 and similar errors. 182 183 Use PetscPushErrorHandler() to set the desired error handler. The 184 currently available PETSc error handlers include PetscTraceBackErrorHandler(), 185 PetscAttachDebuggerErrorHandler(), PetscAbortErrorHandler(), and PetscAbortErrorHandler() 186 187 .seealso: PetscPushErrorHandler(), PetscPopErrorHandler(). 188 @*/ 189 190 PetscErrorCode PetscReturnErrorHandler(MPI_Comm comm,int line,const char *fun,const char *file,PetscErrorCode n,PetscErrorType p,const char *mess,void *ctx) 191 { 192 PetscFunctionBegin; 193 PetscFunctionReturn(n); 194 } 195 196 static char PetscErrorBaseMessage[1024]; 197 /* 198 The numerical values for these are defined in include/petscerror.h; any changes 199 there must also be made here 200 */ 201 static const char *PetscErrorStrings[] = { 202 /*55 */ "Out of memory", 203 "No support for this operation for this object type", 204 "No support for this operation on this system", 205 /*58 */ "Operation done in wrong order", 206 /*59 */ "Signal received", 207 /*60 */ "Nonconforming object sizes", 208 "Argument aliasing not permitted", 209 "Invalid argument", 210 /*63 */ "Argument out of range", 211 "Corrupt argument: https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind", 212 "Unable to open file", 213 "Read from file failed", 214 "Write to file failed", 215 "Invalid pointer", 216 /*69 */ "Arguments must have same type", 217 /*70 */ "Attempt to use a pointer that does not point to a valid accessible location", 218 /*71 */ "Zero pivot in LU factorization: https://www.mcs.anl.gov/petsc/documentation/faq.html#zeropivot", 219 /*72 */ "Floating point exception", 220 /*73 */ "Object is in wrong state", 221 "Corrupted Petsc object", 222 "Arguments are incompatible", 223 "Error in external library", 224 /*77 */ "Petsc has generated inconsistent data", 225 "Memory corruption: https://www.mcs.anl.gov/petsc/documentation/installation.html#valgrind", 226 "Unexpected data in file", 227 /*80 */ "Arguments must have same communicators", 228 /*81 */ "Zero pivot in Cholesky factorization: https://www.mcs.anl.gov/petsc/documentation/faq.html#zeropivot", 229 " ", 230 " ", 231 "Overflow in integer operation: https://www.mcs.anl.gov/petsc/documentation/faq.html#64-bit-indices", 232 /*85 */ "Null argument, when expecting valid pointer", 233 /*86 */ "Unknown type. Check for miss-spelling or missing package: https://www.mcs.anl.gov/petsc/documentation/installation.html#external", 234 /*87 */ "MPI library at runtime is not compatible with MPI used at compile time", 235 /*88 */ "Error in system call", 236 /*89 */ "Object Type not set: https://www.mcs.anl.gov/petsc/documentation/faq.html#objecttypenotset", 237 /*90 */ " ", 238 /* */ " ", 239 /*92 */ "See https://www.mcs.anl.gov/petsc/documentation/linearsolvertable.html for possible LU and Cholesky solvers", 240 /*93 */ "You cannot overwrite this option since that will conflict with other previously set options", 241 }; 242 243 /*@C 244 PetscErrorMessage - returns the text string associated with a PETSc error code. 245 246 Not Collective 247 248 Input Parameter: 249 . errnum - the error code 250 251 Output Parameter: 252 + text - the error message (NULL if not desired) 253 - specific - the specific error message that was set with SETERRxxx() or PetscError(). (NULL if not desired) 254 255 Level: developer 256 257 .seealso: PetscPushErrorHandler(), PetscAttachDebuggerErrorHandler(), PetscError(), SETERRQ(), CHKERRQ() 258 PetscAbortErrorHandler(), PetscTraceBackErrorHandler() 259 @*/ 260 PetscErrorCode PetscErrorMessage(int errnum,const char *text[],char **specific) 261 { 262 PetscFunctionBegin; 263 if (text && errnum > PETSC_ERR_MIN_VALUE && errnum < PETSC_ERR_MAX_VALUE) *text = PetscErrorStrings[errnum-PETSC_ERR_MIN_VALUE-1]; 264 else if (text) *text = 0; 265 266 if (specific) *specific = PetscErrorBaseMessage; 267 PetscFunctionReturn(0); 268 } 269 270 #if defined(PETSC_CLANGUAGE_CXX) 271 /* C++ exceptions are formally not allowed to propagate through extern "C" code. In practice, far too much software 272 * would be broken if implementations did not handle it it some common cases. However, keep in mind 273 * 274 * Rule 62. Don't allow exceptions to propagate across module boundaries 275 * 276 * in "C++ Coding Standards" by Sutter and Alexandrescu. (This accounts for part of the ongoing C++ binary interface 277 * instability.) Having PETSc raise errors as C++ exceptions was probably misguided and should eventually be removed. 278 * 279 * Here is the problem: You have a C++ function call a PETSc function, and you would like to maintain the error message 280 * and stack information from the PETSc error. You could make everyone write exactly this code in their C++, but that 281 * seems crazy to me. 282 */ 283 #include <sstream> 284 #include <stdexcept> 285 static void PetscCxxErrorThrow() { 286 const char *str; 287 if (eh && eh->ctx) { 288 std::ostringstream *msg; 289 msg = (std::ostringstream*) eh->ctx; 290 str = msg->str().c_str(); 291 } else str = "Error detected in C PETSc"; 292 293 throw std::runtime_error(str); 294 } 295 #endif 296 297 /*@C 298 PetscError - Routine that is called when an error has been detected, 299 usually called through the macro SETERRQ(PETSC_COMM_SELF,). 300 301 Not Collective 302 303 Input Parameters: 304 + comm - communicator over which error occurred. ALL ranks of this communicator MUST call this routine 305 . line - the line number of the error (indicated by __LINE__) 306 . func - the function name in which the error was detected 307 . file - the file in which the error was detected (indicated by __FILE__) 308 . n - the generic error number 309 . p - PETSC_ERROR_INITIAL indicates the error was initially detected, PETSC_ERROR_REPEAT indicates this is a traceback from a previously detected error 310 - mess - formatted message string - aka printf 311 312 Level: intermediate 313 314 Notes: 315 Most users need not directly use this routine and the error handlers, but 316 can instead use the simplified interface SETERRQ, which has the calling 317 sequence 318 $ SETERRQ(comm,n,mess) 319 320 Fortran Note: 321 This routine is used differently from Fortran 322 $ PetscError(MPI_Comm comm,PetscErrorCode n,PetscErrorType p,char *message) 323 324 Experienced users can set the error handler with PetscPushErrorHandler(). 325 326 Developer Note: Since this is called after an error condition it should not be calling any error handlers (currently it ignores any error codes) 327 BUT this routine does call regular PETSc functions that may call error handlers, this is problematic and could be fixed by never calling other PETSc routines 328 but this annoying. 329 330 .seealso: PetscTraceBackErrorHandler(), PetscPushErrorHandler(), SETERRQ(), CHKERRQ(), CHKMEMQ, SETERRQ1(), SETERRQ2(), PetscErrorMessage() 331 @*/ 332 PetscErrorCode PetscError(MPI_Comm comm,int line,const char *func,const char *file,PetscErrorCode n,PetscErrorType p,const char *mess,...) 333 { 334 va_list Argp; 335 size_t fullLength; 336 char buf[2048],*lbuf = 0; 337 PetscBool ismain; 338 PetscErrorCode ierr; 339 340 PetscFunctionBegin; 341 if (!func) func = "User provided function"; 342 if (!file) file = "User file"; 343 if (comm == MPI_COMM_NULL) comm = PETSC_COMM_SELF; 344 345 /* Compose the message evaluating the print format */ 346 if (mess) { 347 va_start(Argp,mess); 348 PetscVSNPrintf(buf,2048,mess,&fullLength,Argp); 349 va_end(Argp); 350 lbuf = buf; 351 if (p == PETSC_ERROR_INITIAL) PetscStrncpy(PetscErrorBaseMessage,lbuf,1023); 352 } 353 354 if (!eh) ierr = PetscTraceBackErrorHandler(comm,line,func,file,n,p,lbuf,0); 355 else ierr = (*eh->handler)(comm,line,func,file,n,p,lbuf,eh->ctx); 356 357 /* 358 If this is called from the main() routine we call MPI_Abort() instead of 359 return to allow the parallel program to be properly shutdown. 360 361 Since this is in the error handler we don't check the errors below. Of course, 362 PetscStrncmp() does its own error checking which is problamatic 363 */ 364 PetscStrncmp(func,"main",4,&ismain); 365 if (ismain) MPI_Abort(PETSC_COMM_WORLD,(int)ierr); 366 367 #if defined(PETSC_CLANGUAGE_CXX) 368 if (p == PETSC_ERROR_IN_CXX) { 369 PetscCxxErrorThrow(); 370 } 371 #endif 372 PetscFunctionReturn(ierr); 373 } 374 375 /* -------------------------------------------------------------------------*/ 376 377 /*@C 378 PetscIntView - Prints an array of integers; useful for debugging. 379 380 Collective on PetscViewer 381 382 Input Parameters: 383 + N - number of integers in array 384 . idx - array of integers 385 - viewer - location to print array, PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_STDOUT_SELF or 0 386 387 Level: intermediate 388 389 Developer Notes: 390 idx cannot be const because may be passed to binary viewer where byte swapping is done 391 392 .seealso: PetscRealView() 393 @*/ 394 PetscErrorCode PetscIntView(PetscInt N,const PetscInt idx[],PetscViewer viewer) 395 { 396 PetscErrorCode ierr; 397 PetscInt j,i,n = N/20,p = N % 20; 398 PetscBool iascii,isbinary; 399 MPI_Comm comm; 400 401 PetscFunctionBegin; 402 if (!viewer) viewer = PETSC_VIEWER_STDOUT_SELF; 403 PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,3); 404 if (N) PetscValidIntPointer(idx,2); 405 ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 406 407 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 408 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 409 if (iascii) { 410 ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 411 for (i=0; i<n; i++) { 412 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"%D:",20*i);CHKERRQ(ierr); 413 for (j=0; j<20; j++) { 414 ierr = PetscViewerASCIISynchronizedPrintf(viewer," %D",idx[i*20+j]);CHKERRQ(ierr); 415 } 416 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"\n");CHKERRQ(ierr); 417 } 418 if (p) { 419 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"%D:",20*n);CHKERRQ(ierr); 420 for (i=0; i<p; i++) { ierr = PetscViewerASCIISynchronizedPrintf(viewer," %D",idx[20*n+i]);CHKERRQ(ierr);} 421 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"\n");CHKERRQ(ierr); 422 } 423 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 424 ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 425 } else if (isbinary) { 426 PetscMPIInt rank,size,*sizes,Ntotal,*displs,NN; 427 PetscInt *array; 428 429 ierr = PetscMPIIntCast(N,&NN);CHKERRQ(ierr); 430 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 431 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 432 433 if (size > 1) { 434 if (rank) { 435 ierr = MPI_Gather(&NN,1,MPI_INT,0,0,MPI_INT,0,comm);CHKERRQ(ierr); 436 ierr = MPI_Gatherv((void*)idx,NN,MPIU_INT,0,0,0,MPIU_INT,0,comm);CHKERRQ(ierr); 437 } else { 438 ierr = PetscMalloc1(size,&sizes);CHKERRQ(ierr); 439 ierr = MPI_Gather(&NN,1,MPI_INT,sizes,1,MPI_INT,0,comm);CHKERRQ(ierr); 440 Ntotal = sizes[0]; 441 ierr = PetscMalloc1(size,&displs);CHKERRQ(ierr); 442 displs[0] = 0; 443 for (i=1; i<size; i++) { 444 Ntotal += sizes[i]; 445 displs[i] = displs[i-1] + sizes[i-1]; 446 } 447 ierr = PetscMalloc1(Ntotal,&array);CHKERRQ(ierr); 448 ierr = MPI_Gatherv((void*)idx,NN,MPIU_INT,array,sizes,displs,MPIU_INT,0,comm);CHKERRQ(ierr); 449 ierr = PetscViewerBinaryWrite(viewer,array,Ntotal,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 450 ierr = PetscFree(sizes);CHKERRQ(ierr); 451 ierr = PetscFree(displs);CHKERRQ(ierr); 452 ierr = PetscFree(array);CHKERRQ(ierr); 453 } 454 } else { 455 ierr = PetscViewerBinaryWrite(viewer,(void*) idx,N,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 456 } 457 } else { 458 const char *tname; 459 ierr = PetscObjectGetName((PetscObject)viewer,&tname);CHKERRQ(ierr); 460 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot handle that PetscViewer of type %s",tname); 461 } 462 PetscFunctionReturn(0); 463 } 464 465 /*@C 466 PetscRealView - Prints an array of doubles; useful for debugging. 467 468 Collective on PetscViewer 469 470 Input Parameters: 471 + N - number of PetscReal in array 472 . idx - array of PetscReal 473 - viewer - location to print array, PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_STDOUT_SELF or 0 474 475 Level: intermediate 476 477 Developer Notes: 478 idx cannot be const because may be passed to binary viewer where byte swapping is done 479 480 .seealso: PetscIntView() 481 @*/ 482 PetscErrorCode PetscRealView(PetscInt N,const PetscReal idx[],PetscViewer viewer) 483 { 484 PetscErrorCode ierr; 485 PetscInt j,i,n = N/5,p = N % 5; 486 PetscBool iascii,isbinary; 487 MPI_Comm comm; 488 489 PetscFunctionBegin; 490 if (!viewer) viewer = PETSC_VIEWER_STDOUT_SELF; 491 PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,3); 492 PetscValidScalarPointer(idx,2); 493 ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 494 495 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 496 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 497 if (iascii) { 498 ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 499 for (i=0; i<n; i++) { 500 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"%2d:",(int)5*i);CHKERRQ(ierr); 501 for (j=0; j<5; j++) { 502 ierr = PetscViewerASCIISynchronizedPrintf(viewer," %12.4e",(double)idx[i*5+j]);CHKERRQ(ierr); 503 } 504 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"\n");CHKERRQ(ierr); 505 } 506 if (p) { 507 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"%2d:",(int)5*n);CHKERRQ(ierr); 508 for (i=0; i<p; i++) { PetscViewerASCIISynchronizedPrintf(viewer," %12.4e",(double)idx[5*n+i]);CHKERRQ(ierr);} 509 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"\n");CHKERRQ(ierr); 510 } 511 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 512 ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 513 } else if (isbinary) { 514 PetscMPIInt rank,size,*sizes,*displs, Ntotal,NN; 515 PetscReal *array; 516 517 ierr = PetscMPIIntCast(N,&NN);CHKERRQ(ierr); 518 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 519 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 520 521 if (size > 1) { 522 if (rank) { 523 ierr = MPI_Gather(&NN,1,MPI_INT,0,0,MPI_INT,0,comm);CHKERRQ(ierr); 524 ierr = MPI_Gatherv((PetscReal*)idx,NN,MPIU_REAL,0,0,0,MPIU_REAL,0,comm);CHKERRQ(ierr); 525 } else { 526 ierr = PetscMalloc1(size,&sizes);CHKERRQ(ierr); 527 ierr = MPI_Gather(&NN,1,MPI_INT,sizes,1,MPI_INT,0,comm);CHKERRQ(ierr); 528 Ntotal = sizes[0]; 529 ierr = PetscMalloc1(size,&displs);CHKERRQ(ierr); 530 displs[0] = 0; 531 for (i=1; i<size; i++) { 532 Ntotal += sizes[i]; 533 displs[i] = displs[i-1] + sizes[i-1]; 534 } 535 ierr = PetscMalloc1(Ntotal,&array);CHKERRQ(ierr); 536 ierr = MPI_Gatherv((PetscReal*)idx,NN,MPIU_REAL,array,sizes,displs,MPIU_REAL,0,comm);CHKERRQ(ierr); 537 ierr = PetscViewerBinaryWrite(viewer,array,Ntotal,PETSC_REAL,PETSC_TRUE);CHKERRQ(ierr); 538 ierr = PetscFree(sizes);CHKERRQ(ierr); 539 ierr = PetscFree(displs);CHKERRQ(ierr); 540 ierr = PetscFree(array);CHKERRQ(ierr); 541 } 542 } else { 543 ierr = PetscViewerBinaryWrite(viewer,(void*) idx,N,PETSC_REAL,PETSC_FALSE);CHKERRQ(ierr); 544 } 545 } else { 546 const char *tname; 547 ierr = PetscObjectGetName((PetscObject)viewer,&tname);CHKERRQ(ierr); 548 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot handle that PetscViewer of type %s",tname); 549 } 550 PetscFunctionReturn(0); 551 } 552 553 /*@C 554 PetscScalarView - Prints an array of scalars; useful for debugging. 555 556 Collective on PetscViewer 557 558 Input Parameters: 559 + N - number of scalars in array 560 . idx - array of scalars 561 - viewer - location to print array, PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_STDOUT_SELF or 0 562 563 Level: intermediate 564 565 Developer Notes: 566 idx cannot be const because may be passed to binary viewer where byte swapping is done 567 568 .seealso: PetscIntView(), PetscRealView() 569 @*/ 570 PetscErrorCode PetscScalarView(PetscInt N,const PetscScalar idx[],PetscViewer viewer) 571 { 572 PetscErrorCode ierr; 573 PetscInt j,i,n = N/3,p = N % 3; 574 PetscBool iascii,isbinary; 575 MPI_Comm comm; 576 577 PetscFunctionBegin; 578 if (!viewer) viewer = PETSC_VIEWER_STDOUT_SELF; 579 PetscValidHeader(viewer,3); 580 if (N) PetscValidScalarPointer(idx,2); 581 ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 582 583 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 584 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 585 if (iascii) { 586 ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 587 for (i=0; i<n; i++) { 588 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"%2d:",3*i);CHKERRQ(ierr); 589 for (j=0; j<3; j++) { 590 #if defined(PETSC_USE_COMPLEX) 591 ierr = PetscViewerASCIISynchronizedPrintf(viewer," (%12.4e,%12.4e)", (double)PetscRealPart(idx[i*3+j]),(double)PetscImaginaryPart(idx[i*3+j]));CHKERRQ(ierr); 592 #else 593 ierr = PetscViewerASCIISynchronizedPrintf(viewer," %12.4e",(double)idx[i*3+j]);CHKERRQ(ierr); 594 #endif 595 } 596 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"\n");CHKERRQ(ierr); 597 } 598 if (p) { 599 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"%2d:",3*n);CHKERRQ(ierr); 600 for (i=0; i<p; i++) { 601 #if defined(PETSC_USE_COMPLEX) 602 ierr = PetscViewerASCIISynchronizedPrintf(viewer," (%12.4e,%12.4e)", (double)PetscRealPart(idx[n*3+i]),(double)PetscImaginaryPart(idx[n*3+i]));CHKERRQ(ierr); 603 #else 604 ierr = PetscViewerASCIISynchronizedPrintf(viewer," %12.4e",(double)idx[3*n+i]);CHKERRQ(ierr); 605 #endif 606 } 607 ierr = PetscViewerASCIISynchronizedPrintf(viewer,"\n");CHKERRQ(ierr); 608 } 609 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 610 ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 611 } else if (isbinary) { 612 PetscMPIInt size,rank,*sizes,Ntotal,*displs,NN; 613 PetscScalar *array; 614 615 ierr = PetscMPIIntCast(N,&NN);CHKERRQ(ierr); 616 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 617 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 618 619 if (size > 1) { 620 if (rank) { 621 ierr = MPI_Gather(&NN,1,MPI_INT,0,0,MPI_INT,0,comm);CHKERRQ(ierr); 622 ierr = MPI_Gatherv((void*)idx,NN,MPIU_SCALAR,0,0,0,MPIU_SCALAR,0,comm);CHKERRQ(ierr); 623 } else { 624 ierr = PetscMalloc1(size,&sizes);CHKERRQ(ierr); 625 ierr = MPI_Gather(&NN,1,MPI_INT,sizes,1,MPI_INT,0,comm);CHKERRQ(ierr); 626 Ntotal = sizes[0]; 627 ierr = PetscMalloc1(size,&displs);CHKERRQ(ierr); 628 displs[0] = 0; 629 for (i=1; i<size; i++) { 630 Ntotal += sizes[i]; 631 displs[i] = displs[i-1] + sizes[i-1]; 632 } 633 ierr = PetscMalloc1(Ntotal,&array);CHKERRQ(ierr); 634 ierr = MPI_Gatherv((void*)idx,NN,MPIU_SCALAR,array,sizes,displs,MPIU_SCALAR,0,comm);CHKERRQ(ierr); 635 ierr = PetscViewerBinaryWrite(viewer,array,Ntotal,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 636 ierr = PetscFree(sizes);CHKERRQ(ierr); 637 ierr = PetscFree(displs);CHKERRQ(ierr); 638 ierr = PetscFree(array);CHKERRQ(ierr); 639 } 640 } else { 641 ierr = PetscViewerBinaryWrite(viewer,(void*) idx,N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 642 } 643 } else { 644 const char *tname; 645 ierr = PetscObjectGetName((PetscObject)viewer,&tname);CHKERRQ(ierr); 646 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot handle that PetscViewer of type %s",tname); 647 } 648 PetscFunctionReturn(0); 649 } 650 651 652 653 654