sys/memory/mal.c

/*
    Code that allows a user to dictate what malloc() PETSc uses.
*/
#include <petscsys.h>             /*I   "petscsys.h"   I*/
#if defined(PETSC_HAVE_MALLOC_H)
#include <malloc.h>
#endif

/*
        We want to make sure that all mallocs of double or complex numbers are complex aligned.
    1) on systems with memalign() we call that routine to get an aligned memory location
    2) on systems without memalign() we
       - allocate one sizeof(PetscScalar) extra space
       - we shift the pointer up slightly if needed to get PetscScalar aligned
       - if shifted we store at ptr[-1] the amount of shift (plus a classid)
*/
#define SHIFT_CLASSID 456123

#undef __FUNCT__
#define __FUNCT__ "PetscMallocAlign"
PetscErrorCode  PetscMallocAlign(size_t mem,int line,const char func[],const char file[],void **result)
{
  if (!mem) { *result = NULL; return 0; }
#if defined(PETSC_HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)
  *result = malloc(mem);
#elif defined(PETSC_HAVE_MEMALIGN)
  *result = memalign(PETSC_MEMALIGN,mem);
#else
  {
    /*
      malloc space for two extra chunks and shift ptr 1 + enough to get it PetscScalar aligned
    */
    int *ptr = (int*)malloc(mem + 2*PETSC_MEMALIGN);
    if (ptr) {
      int shift    = (int)(((PETSC_UINTPTR_T) ptr) % PETSC_MEMALIGN);
      shift        = (2*PETSC_MEMALIGN - shift)/sizeof(int);
      ptr[shift-1] = shift + SHIFT_CLASSID;
      ptr         += shift;
      *result      = (void*)ptr;
    } else {
      *result      = NULL;
    }
  }
#endif
  if (!*result) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_MEM,PETSC_ERROR_INITIAL,"Memory requested %.0f",(PetscLogDouble)mem);
  return 0;
}

#undef __FUNCT__
#define __FUNCT__ "PetscFreeAlign"
PetscErrorCode  PetscFreeAlign(void *ptr,int line,const char func[],const char file[])
{
  if (!ptr) return 0;
#if (!(defined(PETSC_HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)) && !defined(PETSC_HAVE_MEMALIGN))
  {
    /*
      Previous int tells us how many ints the pointer has been shifted from
      the original address provided by the system malloc().
    */
    int shift = *(((int*)ptr)-1) - SHIFT_CLASSID;
    if (shift > PETSC_MEMALIGN-1) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL,"Likely memory corruption in heap");
    if (shift < 0) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL,"Likely memory corruption in heap");
    ptr = (void*)(((int*)ptr) - shift);
  }
#endif

#if defined(PETSC_HAVE_FREE_RETURN_INT)
  int err = free(ptr);
  if (err) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL,"System free returned error %d\n",err);
#else
  free(ptr);
#endif
  return 0;
}

#undef __FUNCT__
#define __FUNCT__ "PetscReallocAlign"
PetscErrorCode PetscReallocAlign(size_t mem, int line, const char func[], const char file[], void **result)
{
  if (!mem) {*result = NULL; return 0;}
#if (!(defined(PETSC_HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)) && !defined(PETSC_HAVE_MEMALIGN))
  {
    /*
      Previous int tells us how many ints the pointer has been shifted from
      the original address provided by the system malloc().
    */
    int shift = *(((int*)*result)-1) - SHIFT_CLASSID;
    if (shift > PETSC_MEMALIGN-1) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL,"Likely memory corruption in heap");
    if (shift < 0) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL,"Likely memory corruption in heap");
    *result = (void*)(((int*)*result) - shift);
  }
#endif

#if defined(PETSC_HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)
  *result = realloc(*result, mem);
#else
  {
    /*
      malloc space for two extra chunks and shift ptr 1 + enough to get it PetscScalar aligned
    */
    int *ptr = (int *) realloc(*result, mem + 2*PETSC_MEMALIGN);
    if (ptr) {
      int shift    = (int)(((PETSC_UINTPTR_T) ptr) % PETSC_MEMALIGN);
      shift        = (2*PETSC_MEMALIGN - shift)/sizeof(int);
      ptr[shift-1] = shift + SHIFT_CLASSID;
      ptr         += shift;
      *result      = (void*)ptr;
    } else {
      *result      = NULL;
    }
  }
#endif
  if (!*result) return PetscError(PETSC_COMM_SELF,line,func,file,PETSC_ERR_MEM,PETSC_ERROR_INITIAL,"Memory requested %.0f",(PetscLogDouble)mem);
  return 0;
}

PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**) = PetscMallocAlign;
PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[])           = PetscFreeAlign;
PetscErrorCode (*PetscTrRealloc)(size_t,int,const char[],const char[],void**) = PetscReallocAlign;

PetscBool petscsetmallocvisited = PETSC_FALSE;

#undef __FUNCT__
#define __FUNCT__ "PetscMallocSet"
/*@C
   PetscMallocSet - Sets the routines used to do mallocs and frees.
   This routine MUST be called before PetscInitialize() and may be
   called only once.

   Not Collective

   Input Parameters:
+  malloc - the malloc routine
-  free - the free routine

   Level: developer

   Concepts: malloc
   Concepts: memory^allocation

@*/
PetscErrorCode  PetscMallocSet(PetscErrorCode (*imalloc)(size_t,int,const char[],const char[],void**),
                                              PetscErrorCode (*ifree)(void*,int,const char[],const char[]))
{
  PetscFunctionBegin;
  if (petscsetmallocvisited && (imalloc != PetscTrMalloc || ifree != PetscTrFree)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"cannot call multiple times");
  PetscTrMalloc         = imalloc;
  PetscTrFree           = ifree;
  petscsetmallocvisited = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PetscMallocClear"
/*@C
   PetscMallocClear - Resets the routines used to do mallocs and frees to the
        defaults.

   Not Collective

   Level: developer

   Notes:
    In general one should never run a PETSc program with different malloc() and
    free() settings for different parts; this is because one NEVER wants to
    free() an address that was malloced by a different memory management system

@*/
PetscErrorCode  PetscMallocClear(void)
{
  PetscFunctionBegin;
  PetscTrMalloc         = PetscMallocAlign;
  PetscTrFree           = PetscFreeAlign;
  petscsetmallocvisited = PETSC_FALSE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PetscMemoryTrace"
PetscErrorCode PetscMemoryTrace(const char label[])
{
  PetscErrorCode        ierr;
  PetscLogDouble        mem,mal;
  static PetscLogDouble oldmem = 0,oldmal = 0;

  PetscFunctionBegin;
  ierr = PetscMemoryGetCurrentUsage(&mem);CHKERRQ(ierr);
  ierr = PetscMallocGetCurrentUsage(&mal);CHKERRQ(ierr);

  ierr = PetscPrintf(PETSC_COMM_WORLD,"%s High water  %8.3f MB increase %8.3f MB Current %8.3f MB increase %8.3f MB\n",label,mem*1e-6,(mem - oldmem)*1e-6,mal*1e-6,(mal - oldmal)*1e-6);CHKERRQ(ierr);
  oldmem = mem;
  oldmal = mal;
  PetscFunctionReturn(0);
}