sys/memory/mal.c

/*
    Code that allows a user to dictate what malloc() PETSc uses.
*/
#define PETSC_DESIRE_FEATURE_TEST_MACROS /* for posix_memalign() */
#include <petscsys.h>                    /*I   "petscsys.h"   I*/
#include <stdarg.h>
#if defined(PETSC_HAVE_MALLOC_H)
  #include <malloc.h>
#endif
#if defined(PETSC_HAVE_MEMKIND)
  #include <errno.h>
  #include <memkind.h>
typedef enum {
  PETSC_MK_DEFAULT       = 0,
  PETSC_MK_HBW_PREFERRED = 1
} PetscMemkindType;
PetscMemkindType currentmktype  = PETSC_MK_HBW_PREFERRED;
PetscMemkindType previousmktype = PETSC_MK_HBW_PREFERRED;
#endif
/*
        We want to make sure that all mallocs of double or complex numbers are complex aligned.
    1) on systems with memalign() we call that routine to get an aligned memory location
    2) on systems without memalign() we
       - allocate one sizeof(PetscScalar) extra space
       - we shift the pointer up slightly if needed to get PetscScalar aligned
       - if shifted we store at ptr[-1] the amount of shift (plus a classid)
*/
#define SHIFT_CLASSID 456123

PETSC_EXTERN PetscErrorCode PetscMallocAlign(size_t mem, PetscBool clear, int line, const char func[], const char file[], void **result)
{
  if (!mem) {
    *result = NULL;
    return PETSC_SUCCESS;
  }
#if PetscDefined(HAVE_MEMKIND)
  {
    int err = memkind_posix_memalign(currentmktype ? MEMKIND_HBW_PREFERRED : MEMKIND_DEFAULT, result, PETSC_MEMALIGN, mem);
    PetscCheck(err != EINVAL, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memkind: invalid 3rd or 4th argument of memkind_posix_memalign()");
    if (err == ENOMEM) PetscInfo(NULL, "Memkind: fail to request HBW memory %.0f, falling back to normal memory\n", (PetscLogDouble)mem);
    PetscCheck(*result, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memory requested %.0f", (PetscLogDouble)mem);
    if (clear) PetscCall(PetscMemzero(*result, mem));
  }
#else /* PetscDefined(HAVE_MEMKIND) */
  #if PetscDefined(HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)
  if (clear) *result = calloc(1 + mem / sizeof(int), sizeof(int));
  else *result = malloc(mem);

  PetscCheck(*result, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memory requested %.0f", (PetscLogDouble)mem);
  if (PetscLogMemory) PetscCall(PetscMemzero(*result, mem));
  #elif PetscDefined(HAVE_POSIX_MEMALIGN)
  int ret = posix_memalign(result, PETSC_MEMALIGN, mem);
  PetscCheck(ret == 0, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memory requested %.0f", (PetscLogDouble)mem);
  if (clear || PetscLogMemory) PetscCall(PetscMemzero(*result, mem));
  #else  /* PetscDefined(HAVE_DOUBLE_ALIGN_MALLOC) || PetscDefined(HAVE_POSIX_MEMALIGN) */
  {
    int *ptr, shift;
    /*
      malloc space for two extra chunks and shift ptr 1 + enough to get it PetscScalar aligned
    */
    if (clear) {
      ptr = (int *)calloc(1 + (mem + 2 * PETSC_MEMALIGN) / sizeof(int), sizeof(int));
    } else {
      ptr = (int *)malloc(mem + 2 * PETSC_MEMALIGN);
    }
    PetscCheck(ptr, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memory requested %.0f", (PetscLogDouble)mem);
    shift          = (int)(((PETSC_UINTPTR_T)ptr) % PETSC_MEMALIGN);
    shift          = (2 * PETSC_MEMALIGN - shift) / sizeof(int);
    ptr[shift - 1] = shift + SHIFT_CLASSID;
    ptr += shift;
    *result = (void *)ptr;
    if (PetscLogMemory) PetscCall(PetscMemzero(*result, mem));
  }
  #endif /* PetscDefined(HAVE_DOUBLE_ALIGN_MALLOC) || PetscDefined(HAVE_POSIX_MEMALIGN) */
#endif   /* PetscDefined(HAVE_MEMKIND) */
  return PETSC_SUCCESS;
}

PETSC_EXTERN PetscErrorCode PetscFreeAlign(void *ptr, int line, const char func[], const char file[])
{
  if (!ptr) return PETSC_SUCCESS;
#if PetscDefined(HAVE_MEMKIND)
  memkind_free(0, ptr); /* specify the kind to 0 so that memkind will look up for the right type */
#else                   /* PetscDefined(HAVE_MEMKIND) */
  #if (!(PetscDefined(HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)) && !PetscDefined(HAVE_POSIX_MEMALIGN))
  {
    /*
      Previous int tells us how many ints the pointer has been shifted from
      the original address provided by the system malloc().
    */
    const int shift = *(((int *)ptr) - 1) - SHIFT_CLASSID;

    PetscCheck(shift <= PETSC_MEMALIGN - 1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Likely memory corruption in heap");
    PetscCheck(shift >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Likely memory corruption in heap");
    ptr = (void *)(((int *)ptr) - shift);
  }
  #endif

  #if PetscDefined(HAVE_FREE_RETURN_INT)
  int err = free(ptr);
  PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_PLIB, "System free returned error %d", err);
  #else
  free(ptr);
  #endif
#endif
  return PETSC_SUCCESS;
}

PETSC_EXTERN PetscErrorCode PetscReallocAlign(size_t mem, int line, const char func[], const char file[], void **result)
{
  if (!mem) {
    PetscCall(PetscFreeAlign(*result, line, func, file));
    *result = NULL;
    return PETSC_SUCCESS;
  }
#if PetscDefined(HAVE_MEMKIND)
  *result = memkind_realloc(currentmktype ? MEMKIND_HBW_PREFERRED : MEMKIND_DEFAULT, *result, mem);
#else
  #if (!(PetscDefined(HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)) && !PetscDefined(HAVE_POSIX_MEMALIGN))
  {
    /*
      Previous int tells us how many ints the pointer has been shifted from
      the original address provided by the system malloc().
    */
    int shift = *(((int *)*result) - 1) - SHIFT_CLASSID;
    PetscCheck(shift <= PETSC_MEMALIGN - 1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Likely memory corruption in heap");
    PetscCheck(shift >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Likely memory corruption in heap");
    *result = (void *)(((int *)*result) - shift);
  }
  #endif

  #if (PetscDefined(HAVE_DOUBLE_ALIGN_MALLOC) && (PETSC_MEMALIGN == 8)) || PetscDefined(HAVE_POSIX_MEMALIGN)
  *result = realloc(*result, mem);
  #else
  {
    /*
      malloc space for two extra chunks and shift ptr 1 + enough to get it PetscScalar aligned
    */
    int *ptr = (int *)realloc(*result, mem + 2 * PETSC_MEMALIGN);
    if (ptr) {
      int shift      = (int)(((PETSC_UINTPTR_T)ptr) % PETSC_MEMALIGN);
      shift          = (2 * PETSC_MEMALIGN - shift) / sizeof(int);
      ptr[shift - 1] = shift + SHIFT_CLASSID;
      ptr += shift;
      *result = (void *)ptr;
    } else {
      *result = NULL;
    }
  }
  #endif
#endif
  PetscCheck(*result, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memory requested %.0f", (PetscLogDouble)mem);
#if PetscDefined(HAVE_POSIX_MEMALIGN)
  /* There are no standard guarantees that realloc() maintains the alignment of memalign(), so I think we have to
   * realloc and, if the alignment is wrong, malloc/copy/free. */
  if (((size_t)*result) % PETSC_MEMALIGN) {
    void *newResult;
  #if PetscDefined(HAVE_MEMKIND)
    {
      int err = memkind_posix_memalign(currentmktype ? MEMKIND_HBW_PREFERRED : MEMKIND_DEFAULT, &newResult, PETSC_MEMALIGN, mem);
      PetscCheck(err != EINVAL, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memkind: invalid 3rd or 4th argument of memkind_posix_memalign()");
      if (err == ENOMEM) PetscInfo(NULL, "Memkind: fail to request HBW memory %.0f, falling back to normal memory\n", (PetscLogDouble)mem);
    }
    PetscCheck(newResult, PETSC_COMM_SELF, PETSC_ERR_MEM, "Memory requested %.0f", (PetscLogDouble)mem);
  #else
    int ret = posix_memalign(&newResult, PETSC_MEMALIGN, mem);
    PetscCheck(ret == 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "posix_memalign() failed with error code %d, memory requested %.0f", ret, (PetscLogDouble)mem);
  #endif
    PetscCall(PetscMemcpy(newResult, *result, mem));
  #if PetscDefined(HAVE_FREE_RETURN_INT)
    {
      int err = free(*result);
      PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_PLIB, "System free returned error %d", err);
    }
  #else
    #if defined(PETSC_HAVE_MEMKIND)
    memkind_free(0, *result);
    #else
    free(*result);
    #endif
  #endif
    *result = newResult;
  }
#endif
  return PETSC_SUCCESS;
}

PetscErrorCode (*PetscTrMalloc)(size_t, PetscBool, int, const char[], const char[], void **) = PetscMallocAlign;
PetscErrorCode (*PetscTrFree)(void *, int, const char[], const char[])                       = PetscFreeAlign;
PetscErrorCode (*PetscTrRealloc)(size_t, int, const char[], const char[], void **)           = PetscReallocAlign;

PETSC_INTERN PetscBool petscsetmallocvisited;
PetscBool              petscsetmallocvisited = PETSC_FALSE;

/*@C
  PetscMallocSet - Sets the underlying allocation routines used by `PetscMalloc()` and `PetscFree()`

  Not Collective

  Input Parameters:
+ imalloc - the routine that provides the `malloc()` implementation (also provides `calloc()`, which is used depending on the second argument)
. ifree   - the routine that provides the `free()` implementation
- iralloc - the routine that provides the `realloc()` implementation

  Level: developer

  Note:
  This routine MUST be called before `PetscInitialize()` and may be
  called only once.

.seealso: `PetscMallocClear()`, `PetscInitialize()`, `PetscMalloc()`, `PetscFree()`
@*/
PetscErrorCode PetscMallocSet(PetscErrorCode (*imalloc)(size_t, PetscBool, int, const char[], const char[], void **), PetscErrorCode (*ifree)(void *, int, const char[], const char[]), PetscErrorCode (*iralloc)(size_t, int, const char[], const char[], void **))
{
  PetscFunctionBegin;
  PetscCheck(!petscsetmallocvisited || !(imalloc != PetscTrMalloc || ifree != PetscTrFree), PETSC_COMM_SELF, PETSC_ERR_SUP, "cannot call multiple times");
  PetscTrMalloc         = imalloc;
  PetscTrFree           = ifree;
  PetscTrRealloc        = iralloc;
  petscsetmallocvisited = PETSC_TRUE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  PetscMallocClear - Resets the routines used by `PetscMalloc()` and `PetscFree()`

  Not Collective

  Level: developer

  Notes:
  In general one should never run a PETSc program with different `malloc()` and
  `free()` settings for different parts; this is because one NEVER wants to
  `free()` an address that was malloced by a different memory management system

  Called in `PetscFinalize()` so that if `PetscInitialize()` is called again it starts with a fresh slate of allocation information

.seealso: `PetscMallocSet()`, `PetscMalloc()`, `PetscFree()`
@*/
PetscErrorCode PetscMallocClear(void)
{
  PetscFunctionBegin;
  PetscTrMalloc         = PetscMallocAlign;
  PetscTrFree           = PetscFreeAlign;
  PetscTrRealloc        = PetscReallocAlign;
  petscsetmallocvisited = PETSC_FALSE;
  PetscFunctionReturn(PETSC_SUCCESS);
}

PetscErrorCode PetscMemoryTrace(const char label[])
{
  PetscLogDouble        mem, mal;
  static PetscLogDouble oldmem = 0, oldmal = 0;

  PetscFunctionBegin;
  PetscCall(PetscMemoryGetCurrentUsage(&mem));
  PetscCall(PetscMallocGetCurrentUsage(&mal));

  PetscCall(PetscPrintf(PETSC_COMM_WORLD, "%s High water  %8.3f MB increase %8.3f MB Current %8.3f MB increase %8.3f MB\n", label, mem * 1e-6, (mem - oldmem) * 1e-6, mal * 1e-6, (mal - oldmal) * 1e-6));
  oldmem = mem;
  oldmal = mal;
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscErrorCode (*PetscTrMallocOld)(size_t, PetscBool, int, const char[], const char[], void **) = PetscMallocAlign;
static PetscErrorCode (*PetscTrReallocOld)(size_t, int, const char[], const char[], void **)           = PetscReallocAlign;
static PetscErrorCode (*PetscTrFreeOld)(void *, int, const char[], const char[])                       = PetscFreeAlign;

/*@C
  PetscMallocSetDRAM - Set `PetscMalloc()` to use DRAM.
  If memkind is available, change the memkind type. Otherwise, switch the
  current malloc and free routines to the `PetscMallocAlign()` and
  `PetscFreeAlign()` (PETSc default).

  Not Collective

  Level: developer

  Note:
  This provides a way to do the allocation on DRAM temporarily. One
  can switch back to the previous choice by calling `PetscMallocReset()`.

.seealso: `PetscMallocReset()`, `PetscMalloc()`, `PetscFree()`
@*/
PetscErrorCode PetscMallocSetDRAM(void)
{
  PetscFunctionBegin;
  if (PetscTrMalloc == PetscMallocAlign) {
#if defined(PETSC_HAVE_MEMKIND)
    previousmktype = currentmktype;
    currentmktype  = PETSC_MK_DEFAULT;
#endif
  } else {
    /* Save the previous choice */
    PetscTrMallocOld  = PetscTrMalloc;
    PetscTrReallocOld = PetscTrRealloc;
    PetscTrFreeOld    = PetscTrFree;
    PetscTrMalloc     = PetscMallocAlign;
    PetscTrFree       = PetscFreeAlign;
    PetscTrRealloc    = PetscReallocAlign;
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  PetscMallocResetDRAM - Reset the changes made by `PetscMallocSetDRAM()`

  Not Collective

  Level: developer

.seealso: `PetscMallocSetDRAM()`
@*/
PetscErrorCode PetscMallocResetDRAM(void)
{
  PetscFunctionBegin;
  if (PetscTrMalloc == PetscMallocAlign) {
#if defined(PETSC_HAVE_MEMKIND)
    currentmktype = previousmktype;
#endif
  } else {
    /* Reset to the previous choice */
    PetscTrMalloc  = PetscTrMallocOld;
    PetscTrRealloc = PetscTrReallocOld;
    PetscTrFree    = PetscTrFreeOld;
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

static PetscBool petscmalloccoalesce =
#if defined(PETSC_USE_MALLOC_COALESCED)
  PETSC_TRUE;
#else
  PETSC_FALSE;
#endif

/*@C
  PetscMallocSetCoalesce - Use coalesced `PetscMalloc()` when allocating groups of objects, that is when using `PetscMallocN()`

  Not Collective

  Input Parameter:
. coalesce - `PETSC_TRUE` to use coalesced malloc for multi-memory allocation.

  Options Database Key:
. -malloc_coalesce - turn coalesced `PetscMallocN()` on or off

  Level: developer

  Notes:
  PETSc uses coalesced `PetscMallocN()` by default for optimized builds and not for debugging builds.

  This default can be changed via the command-line option `-malloc_coalesce` or by calling this function.

  This function can only be called immediately after `PetscInitialize()`

.seealso: `PetscMallocA()`, `PetscMalloc()`, `PetscFree()`
@*/
PetscErrorCode PetscMallocSetCoalesce(PetscBool coalesce)
{
  PetscFunctionBegin;
  petscmalloccoalesce = coalesce;
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  PetscMallocA - Allocate and optionally clear one or more memory locations, possibly using coalesced malloc

  Not Collective

  Input Parameters:
+ n        - number of objects to allocate (at least 1)
. clear    - use `calloc()` to allocate space initialized to zero
. lineno   - line number to attribute allocation (typically `__LINE__`)
. function - function to attribute allocation (typically `PETSC_FUNCTION_NAME`)
. filename - file name to attribute allocation (typically `__FILE__`)
- bytes0   - first of `n` object sizes

  Output Parameter:
. ptr0 - first of `n` pointers to allocate

  Level: developer

  Note:
  This function is not normally called directly by users, but rather via the macros `PetscMalloc1()`, `PetscMalloc2()`, or `PetscCalloc1()`, etc.

.seealso: `PetscMallocAlign()`, `PetscMallocSet()`, `PetscMalloc1()`, `PetscMalloc2()`, `PetscMalloc3()`, `PetscMalloc4()`, `PetscMalloc5()`, `PetscMalloc6()`, `PetscMalloc7()`,
          `PetscCalloc1()`, `PetscCalloc2()`, `PetscCalloc3()`, `PetscCalloc4()`, `PetscCalloc5()`, `PetscCalloc6()`, `PetscCalloc7()`, `PetscFreeA()`
@*/
PetscErrorCode PetscMallocA(int n, PetscBool clear, int lineno, const char *function, const char *filename, size_t bytes0, void *ptr0, ...)
{
  va_list Argp;
  size_t  bytes[8], sumbytes;
  void  **ptr[8];
  int     i;

  PetscFunctionBegin;
  PetscCheck(n <= 8, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Attempt to allocate %d objects but only 8 supported", n);
  bytes[0] = bytes0;
  ptr[0]   = (void **)ptr0;
  sumbytes = (bytes0 + PETSC_MEMALIGN - 1) & ~(PETSC_MEMALIGN - 1);
  va_start(Argp, ptr0);
  for (i = 1; i < n; i++) {
    bytes[i] = va_arg(Argp, size_t);
    ptr[i]   = va_arg(Argp, void **);
    sumbytes += (bytes[i] + PETSC_MEMALIGN - 1) & ~(PETSC_MEMALIGN - 1);
  }
  va_end(Argp);
  if (petscmalloccoalesce) {
    char *p;
    PetscCall((*PetscTrMalloc)(sumbytes, clear, lineno, function, filename, (void **)&p));
    if (p == NULL) {
      for (i = 0; i < n; i++) *ptr[i] = NULL;
    } else {
      for (i = 0; i < n; i++) {
        *ptr[i] = bytes[i] ? p : NULL;
        p       = (char *)PetscAddrAlign(p + bytes[i]);
      }
    }
  } else {
    for (i = 0; i < n; i++) PetscCall((*PetscTrMalloc)(bytes[i], clear, lineno, function, filename, (void **)ptr[i]));
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  PetscFreeA - Free one or more memory locations, possibly allocated using coalesced `PetscMallocN()`

  Not Collective

  Input Parameters:
+ n        - number of objects to free (at least 1)
. lineno   - line number to attribute deallocation (typically `__LINE__`)
. function - function to attribute deallocation (typically `PETSC_FUNCTION_NAME`)
. filename - file name to attribute deallocation (typically `__FILE__`)
- ptr0     - first of `n` pointers to free

  Level: developer

  Notes:
  This function is not normally called directly by users, but rather via the macros `PetscFree()`, `PetscFree2()`, etc.

  The pointers are zeroed to prevent users from accidentally reusing space that has been freed.

  If the arguments were obtained via `PetscMallocA()`, `PetscMalloc2()`, `PetscMalloc3()`, etc., then the arguments must be passed in the same order to the corresponding `PetscFreeA()`, `PetscFree2()`, `PetscFree3()`, respectively.

.seealso: `PetscMallocAlign()`, `PetscMallocSet()`, `PetscMallocA()`, `PetscFree1()`, `PetscFree2()`, `PetscFree3()`, `PetscFree4()`, `PetscFree5()`, `PetscFree6()`, `PetscFree7()`
@*/
PetscErrorCode PetscFreeA(int n, int lineno, const char *function, const char *filename, void *ptr0, ...)
{
  va_list Argp;
  void  **ptr[8];
  int     i;

  PetscFunctionBegin;
  PetscCheck((n >= 1) && (n <= 8), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Attempt to allocate %d objects but only up to 8 supported", n);
  ptr[0] = (void **)ptr0;
  va_start(Argp, ptr0);
  for (i = 1; i < n; i++) ptr[i] = va_arg(Argp, void **);
  va_end(Argp);
  if (petscmalloccoalesce) {
    for (i = 0; i < n; i++) { /* Find first nonempty allocation */
      if (*ptr[i]) break;
    }
    while (--n > i) *ptr[n] = NULL;
    PetscCall((*PetscTrFree)(*ptr[n], lineno, function, filename));
    *ptr[n] = NULL;
  } else {
    while (--n >= 0) {
      PetscCall((*PetscTrFree)(*ptr[n], lineno, function, filename));
      *ptr[n] = NULL;
    }
  }
  PetscFunctionReturn(PETSC_SUCCESS);
}