1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Interface to malloc() and free(). This code allows for 4e5c89e4eSSatish Balay logging of memory usage and some error checking 5e5c89e4eSSatish Balay */ 6d382aafbSBarry Smith #include "petscsys.h" /*I "petscsys.h" I*/ 7e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 8e5c89e4eSSatish Balay #include <stdlib.h> 9e5c89e4eSSatish Balay #endif 10e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MALLOC_H) 11e5c89e4eSSatish Balay #include <malloc.h> 12e5c89e4eSSatish Balay #endif 13e5c89e4eSSatish Balay 14e5c89e4eSSatish Balay 15e5c89e4eSSatish Balay /* 16e5c89e4eSSatish Balay These are defined in mal.c and ensure that malloced space is PetscScalar aligned 17e5c89e4eSSatish Balay */ 18e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscMallocAlign(size_t,int,const char[],const char[],const char[],void**); 19e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscFreeAlign(void*,int,const char[],const char[],const char[]); 20e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscTrMallocDefault(size_t,int,const char[],const char[],const char[],void**); 21e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscTrFreeDefault(void*,int,const char[],const char[],const char[]); 22e5c89e4eSSatish Balay 23e5c89e4eSSatish Balay 24*0700a824SBarry Smith #define CLASSID_VALUE ((PetscClassId) 0xf0e0d0c9) 25*0700a824SBarry Smith #define ALREADY_FREED ((PetscClassId) 0x0f0e0d9c) 26e5c89e4eSSatish Balay 27e5c89e4eSSatish Balay typedef struct _trSPACE { 28e5c89e4eSSatish Balay size_t size; 29e5c89e4eSSatish Balay int id; 30e5c89e4eSSatish Balay int lineno; 31e5c89e4eSSatish Balay const char *filename; 32e5c89e4eSSatish Balay const char *functionname; 33e5c89e4eSSatish Balay const char *dirname; 34*0700a824SBarry Smith PetscClassId classid; 35e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 36e5c89e4eSSatish Balay PetscStack stack; 37e5c89e4eSSatish Balay #endif 38e5c89e4eSSatish Balay struct _trSPACE *next,*prev; 39e5c89e4eSSatish Balay } TRSPACE; 40e5c89e4eSSatish Balay 4125b53cc9SJed Brown /* HEADER_BYTES is the number of bytes in a PetscMalloc() header. 4225b53cc9SJed Brown It is sizeof(TRSPACE) padded to be a multiple of PETSC_MEMALIGN. 4325b53cc9SJed Brown */ 44e5c89e4eSSatish Balay 4525b53cc9SJed Brown #define HEADER_BYTES (sizeof(TRSPACE)+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1) 46e5c89e4eSSatish Balay 47e5c89e4eSSatish Balay 4825b53cc9SJed Brown /* This union is used to insure that the block passed to the user retains 4925b53cc9SJed Brown a minimum alignment of PETSC_MEMALIGN. 5025b53cc9SJed Brown */ 51e5c89e4eSSatish Balay typedef union { 52e5c89e4eSSatish Balay TRSPACE sp; 5325b53cc9SJed Brown char v[HEADER_BYTES]; 54e5c89e4eSSatish Balay } TrSPACE; 55e5c89e4eSSatish Balay 56b022a5c1SBarry Smith 57e5c89e4eSSatish Balay static size_t TRallocated = 0; 58e5c89e4eSSatish Balay static int TRfrags = 0; 59e5c89e4eSSatish Balay static TRSPACE *TRhead = 0; 60e5c89e4eSSatish Balay static int TRid = 0; 61e5c89e4eSSatish Balay static PetscTruth TRdebugLevel = PETSC_FALSE; 62e5c89e4eSSatish Balay static size_t TRMaxMem = 0; 63e5c89e4eSSatish Balay /* 64e5c89e4eSSatish Balay Arrays to log information on all Mallocs 65e5c89e4eSSatish Balay */ 66e5c89e4eSSatish Balay static int PetscLogMallocMax = 10000,PetscLogMalloc = -1; 67e5c89e4eSSatish Balay static size_t *PetscLogMallocLength; 68e5c89e4eSSatish Balay static const char **PetscLogMallocDirectory,**PetscLogMallocFile,**PetscLogMallocFunction; 69e5c89e4eSSatish Balay 70e5c89e4eSSatish Balay #undef __FUNCT__ 71b022a5c1SBarry Smith #define __FUNCT__ "PetscSetUseTrMalloc_Private" 72b022a5c1SBarry Smith PetscErrorCode PetscSetUseTrMalloc_Private(void) 73b022a5c1SBarry Smith { 74b022a5c1SBarry Smith PetscErrorCode ierr; 75b022a5c1SBarry Smith 76b022a5c1SBarry Smith PetscFunctionBegin; 77b022a5c1SBarry Smith ierr = PetscMallocSet(PetscTrMallocDefault,PetscTrFreeDefault);CHKERRQ(ierr); 78b022a5c1SBarry Smith TRallocated = 0; 79b022a5c1SBarry Smith TRfrags = 0; 80b022a5c1SBarry Smith TRhead = 0; 81b022a5c1SBarry Smith TRid = 0; 82b022a5c1SBarry Smith TRdebugLevel = PETSC_FALSE; 83b022a5c1SBarry Smith TRMaxMem = 0; 84b022a5c1SBarry Smith PetscLogMallocMax = 10000; 85b022a5c1SBarry Smith PetscLogMalloc = -1; 86b022a5c1SBarry Smith PetscFunctionReturn(0); 87b022a5c1SBarry Smith } 88b022a5c1SBarry Smith 89b022a5c1SBarry Smith #undef __FUNCT__ 90e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocValidate" 91e5c89e4eSSatish Balay /*@C 92e5c89e4eSSatish Balay PetscMallocValidate - Test the memory for corruption. This can be used to 93e5c89e4eSSatish Balay check for memory overwrites. 94e5c89e4eSSatish Balay 95e5c89e4eSSatish Balay Input Parameter: 96e5c89e4eSSatish Balay + line - line number where call originated. 97e5c89e4eSSatish Balay . function - name of function calling 98e5c89e4eSSatish Balay . file - file where function is 99e5c89e4eSSatish Balay - dir - directory where function is 100e5c89e4eSSatish Balay 101e5c89e4eSSatish Balay Return value: 102e5c89e4eSSatish Balay The number of errors detected. 103e5c89e4eSSatish Balay 104e5c89e4eSSatish Balay Output Effect: 105e5c89e4eSSatish Balay Error messages are written to stdout. 106e5c89e4eSSatish Balay 107e5c89e4eSSatish Balay Level: advanced 108e5c89e4eSSatish Balay 109e5c89e4eSSatish Balay Notes: 110e5c89e4eSSatish Balay You should generally use CHKMEMQ as a short cut for calling this 111e5c89e4eSSatish Balay routine. 112e5c89e4eSSatish Balay 113e5c89e4eSSatish Balay The line, function, file and dir are given by the C preprocessor as 114e5c89e4eSSatish Balay __LINE__, __FUNCT__, __FILE__, and __DIR__ 115e5c89e4eSSatish Balay 116e5c89e4eSSatish Balay The Fortran calling sequence is simply PetscMallocValidate(ierr) 117e5c89e4eSSatish Balay 118e5c89e4eSSatish Balay No output is generated if there are no problems detected. 119e5c89e4eSSatish Balay 120e5c89e4eSSatish Balay .seealso: CHKMEMQ 121e5c89e4eSSatish Balay 122e5c89e4eSSatish Balay @*/ 123e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocValidate(int line,const char function[],const char file[],const char dir[]) 124e5c89e4eSSatish Balay { 1256c093d5bSvictor TRSPACE *head,*lasthead; 126e5c89e4eSSatish Balay char *a; 127*0700a824SBarry Smith PetscClassId *nend; 128e5c89e4eSSatish Balay 129e5c89e4eSSatish Balay PetscFunctionBegin; 1306c093d5bSvictor head = TRhead; lasthead = NULL; 131e5c89e4eSSatish Balay while (head) { 132*0700a824SBarry Smith if (head->classid != CLASSID_VALUE) { 133e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s%s\n",function,line,dir,file); 134e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory at address %p is corrupted\n",head); 135e5c89e4eSSatish Balay (*PetscErrorPrintf)("Probably write past beginning or end of array\n"); 1366c093d5bSvictor if (lasthead) 1376c093d5bSvictor (*PetscErrorPrintf)("Last intact block allocated in %s() line %d in %s%s\n",lasthead->functionname,lasthead->lineno,lasthead->dirname,lasthead->filename); 138e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC," "); 139e5c89e4eSSatish Balay } 140e5c89e4eSSatish Balay a = (char *)(((TrSPACE*)head) + 1); 141*0700a824SBarry Smith nend = (PetscClassId *)(a + head->size); 142*0700a824SBarry Smith if (*nend != CLASSID_VALUE) { 143e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s%s\n",function,line,dir,file); 144e5c89e4eSSatish Balay if (*nend == ALREADY_FREED) { 145e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p already freed\n",head->id,(PetscLogDouble)head->size,a); 146e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC," "); 147e5c89e4eSSatish Balay } else { 148e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a); 149e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory originally allocated in %s() line %d in %s%s\n",head->functionname,head->lineno,head->dirname,head->filename); 150e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC," "); 151e5c89e4eSSatish Balay } 152e5c89e4eSSatish Balay } 1536c093d5bSvictor lasthead = head; 154e5c89e4eSSatish Balay head = head->next; 155e5c89e4eSSatish Balay } 156e5c89e4eSSatish Balay PetscFunctionReturn(0); 157e5c89e4eSSatish Balay } 158e5c89e4eSSatish Balay 159e5c89e4eSSatish Balay #undef __FUNCT__ 160e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrMallocDefault" 161e5c89e4eSSatish Balay /* 162e5c89e4eSSatish Balay PetscTrMallocDefault - Malloc with tracing. 163e5c89e4eSSatish Balay 164e5c89e4eSSatish Balay Input Parameters: 165e5c89e4eSSatish Balay + a - number of bytes to allocate 166e5c89e4eSSatish Balay . lineno - line number where used. Use __LINE__ for this 167e5c89e4eSSatish Balay . function - function calling routine. Use __FUNCT__ for this 168e5c89e4eSSatish Balay . filename - file name where used. Use __FILE__ for this 169e5c89e4eSSatish Balay - dir - directory where file is. Use __SDIR__ for this 170e5c89e4eSSatish Balay 171e5c89e4eSSatish Balay Returns: 172e5c89e4eSSatish Balay double aligned pointer to requested storage, or null if not 173e5c89e4eSSatish Balay available. 174e5c89e4eSSatish Balay */ 175e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscTrMallocDefault(size_t a,int lineno,const char function[],const char filename[],const char dir[],void**result) 176e5c89e4eSSatish Balay { 177e5c89e4eSSatish Balay TRSPACE *head; 178e5c89e4eSSatish Balay char *inew; 179e5c89e4eSSatish Balay size_t nsize; 180e5c89e4eSSatish Balay PetscErrorCode ierr; 181e5c89e4eSSatish Balay 182e5c89e4eSSatish Balay PetscFunctionBegin; 1832a6744ebSBarry Smith if (!a) { 1842a6744ebSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Trying to malloc zero size array"); 1852a6744ebSBarry Smith } 1862a6744ebSBarry Smith 187e5c89e4eSSatish Balay if (TRdebugLevel) { 188e5c89e4eSSatish Balay ierr = PetscMallocValidate(lineno,function,filename,dir); if (ierr) PetscFunctionReturn(ierr); 189e5c89e4eSSatish Balay } 190e5c89e4eSSatish Balay 19125b53cc9SJed Brown nsize = (a + (PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1); 192*0700a824SBarry Smith ierr = PetscMallocAlign(nsize+sizeof(TrSPACE)+sizeof(PetscClassId),lineno,function,filename,dir,(void**)&inew);CHKERRQ(ierr); 193e5c89e4eSSatish Balay 194e5c89e4eSSatish Balay head = (TRSPACE *)inew; 195e5c89e4eSSatish Balay inew += sizeof(TrSPACE); 196e5c89e4eSSatish Balay 197e5c89e4eSSatish Balay if (TRhead) TRhead->prev = head; 198e5c89e4eSSatish Balay head->next = TRhead; 199e5c89e4eSSatish Balay TRhead = head; 200e5c89e4eSSatish Balay head->prev = 0; 201e5c89e4eSSatish Balay head->size = nsize; 202e5c89e4eSSatish Balay head->id = TRid; 203e5c89e4eSSatish Balay head->lineno = lineno; 204e5c89e4eSSatish Balay 205e5c89e4eSSatish Balay head->filename = filename; 206e5c89e4eSSatish Balay head->functionname = function; 207e5c89e4eSSatish Balay head->dirname = dir; 208*0700a824SBarry Smith head->classid = CLASSID_VALUE; 209*0700a824SBarry Smith *(PetscClassId *)(inew + nsize) = CLASSID_VALUE; 210e5c89e4eSSatish Balay 211e5c89e4eSSatish Balay TRallocated += nsize; 212e5c89e4eSSatish Balay if (TRallocated > TRMaxMem) { 213e5c89e4eSSatish Balay TRMaxMem = TRallocated; 214e5c89e4eSSatish Balay } 215e5c89e4eSSatish Balay TRfrags++; 216e5c89e4eSSatish Balay 217e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 218e5c89e4eSSatish Balay ierr = PetscStackCopy(petscstack,&head->stack);CHKERRQ(ierr); 219e5c89e4eSSatish Balay #endif 220e5c89e4eSSatish Balay 221e5c89e4eSSatish Balay /* 222e5c89e4eSSatish Balay Allow logging of all mallocs made 223e5c89e4eSSatish Balay */ 224e5c89e4eSSatish Balay if (PetscLogMalloc > -1 && PetscLogMalloc < PetscLogMallocMax) { 225e5c89e4eSSatish Balay if (!PetscLogMalloc) { 226e5c89e4eSSatish Balay PetscLogMallocLength = (size_t*)malloc(PetscLogMallocMax*sizeof(size_t)); 227e5c89e4eSSatish Balay if (!PetscLogMallocLength) SETERRQ(PETSC_ERR_MEM," "); 228e5c89e4eSSatish Balay PetscLogMallocDirectory = (const char**)malloc(PetscLogMallocMax*sizeof(char**)); 229e5c89e4eSSatish Balay if (!PetscLogMallocDirectory) SETERRQ(PETSC_ERR_MEM," "); 230e5c89e4eSSatish Balay PetscLogMallocFile = (const char**)malloc(PetscLogMallocMax*sizeof(char**)); 231e5c89e4eSSatish Balay if (!PetscLogMallocFile) SETERRQ(PETSC_ERR_MEM," "); 232e5c89e4eSSatish Balay PetscLogMallocFunction = (const char**)malloc(PetscLogMallocMax*sizeof(char**)); 233e5c89e4eSSatish Balay if (!PetscLogMallocFunction) SETERRQ(PETSC_ERR_MEM," "); 234e5c89e4eSSatish Balay } 235e5c89e4eSSatish Balay PetscLogMallocLength[PetscLogMalloc] = nsize; 236e5c89e4eSSatish Balay PetscLogMallocDirectory[PetscLogMalloc] = dir; 237e5c89e4eSSatish Balay PetscLogMallocFile[PetscLogMalloc] = filename; 238e5c89e4eSSatish Balay PetscLogMallocFunction[PetscLogMalloc++] = function; 239e5c89e4eSSatish Balay } 240e5c89e4eSSatish Balay *result = (void*)inew; 241e5c89e4eSSatish Balay PetscFunctionReturn(0); 242e5c89e4eSSatish Balay } 243e5c89e4eSSatish Balay 244e5c89e4eSSatish Balay 245e5c89e4eSSatish Balay #undef __FUNCT__ 246e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrFreeDefault" 247e5c89e4eSSatish Balay /* 248e5c89e4eSSatish Balay PetscTrFreeDefault - Free with tracing. 249e5c89e4eSSatish Balay 250e5c89e4eSSatish Balay Input Parameters: 251e5c89e4eSSatish Balay . a - pointer to a block allocated with PetscTrMalloc 252e5c89e4eSSatish Balay . lineno - line number where used. Use __LINE__ for this 253e5c89e4eSSatish Balay . function - function calling routine. Use __FUNCT__ for this 254e5c89e4eSSatish Balay . file - file name where used. Use __FILE__ for this 255e5c89e4eSSatish Balay . dir - directory where file is. Use __SDIR__ for this 256e5c89e4eSSatish Balay */ 257e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscTrFreeDefault(void *aa,int line,const char function[],const char file[],const char dir[]) 258e5c89e4eSSatish Balay { 259e5c89e4eSSatish Balay char *a = (char*)aa; 260e5c89e4eSSatish Balay TRSPACE *head; 261e5c89e4eSSatish Balay char *ahead; 262e5c89e4eSSatish Balay PetscErrorCode ierr; 263*0700a824SBarry Smith PetscClassId *nend; 264e5c89e4eSSatish Balay 265e5c89e4eSSatish Balay PetscFunctionBegin; 266e5c89e4eSSatish Balay /* Do not try to handle empty blocks */ 267e5c89e4eSSatish Balay if (!a) { 268e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault called from %s() line %d in %s%s\n",function,line,dir,file); 2692a6744ebSBarry Smith SETERRQ4(PETSC_ERR_ARG_OUTOFRANGE,"Trying to free null block: Free called from %s() line %d in %s%s\n",function,line,dir,file); 270e5c89e4eSSatish Balay } 271e5c89e4eSSatish Balay 272e5c89e4eSSatish Balay if (TRdebugLevel) { 273e5c89e4eSSatish Balay ierr = PetscMallocValidate(line,function,file,dir);CHKERRQ(ierr); 274e5c89e4eSSatish Balay } 275e5c89e4eSSatish Balay 276e5c89e4eSSatish Balay ahead = a; 277e5c89e4eSSatish Balay a = a - sizeof(TrSPACE); 278e5c89e4eSSatish Balay head = (TRSPACE *)a; 279e5c89e4eSSatish Balay 280*0700a824SBarry Smith if (head->classid != CLASSID_VALUE) { 281e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s%s\n",function,line,dir,file); 282e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block at address %p is corrupted; cannot free;\nmay be block not allocated with PetscMalloc()\n",a); 283e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC,"Bad location or corrupted memory"); 284e5c89e4eSSatish Balay } 285*0700a824SBarry Smith nend = (PetscClassId *)(ahead + head->size); 286*0700a824SBarry Smith if (*nend != CLASSID_VALUE) { 287e5c89e4eSSatish Balay if (*nend == ALREADY_FREED) { 288e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s%s\n",function,line,dir,file); 289e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p was already freed\n",head->id,(PetscLogDouble)head->size,a + sizeof(TrSPACE)); 290e5c89e4eSSatish Balay if (head->lineno > 0 && head->lineno < 50000 /* sanity check */) { 291e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block freed in %s() line %d in %s%s\n",head->functionname,head->lineno,head->dirname,head->filename); 292e5c89e4eSSatish Balay } else { 293e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block allocated in %s() line %d in %s%s\n",head->functionname,-head->lineno,head->dirname,head->filename); 294e5c89e4eSSatish Balay } 295e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,"Memory already freed"); 296e5c89e4eSSatish Balay } else { 297e5c89e4eSSatish Balay /* Damaged tail */ 298e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s%s\n",function,line,dir,file); 299e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a); 300e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block allocated in %s() line %d in %s%s\n",head->functionname,head->lineno,head->dirname,head->filename); 301e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC,"Corrupted memory"); 302e5c89e4eSSatish Balay } 303e5c89e4eSSatish Balay } 304e5c89e4eSSatish Balay /* Mark the location freed */ 305e5c89e4eSSatish Balay *nend = ALREADY_FREED; 306e5c89e4eSSatish Balay /* Save location where freed. If we suspect the line number, mark as allocated location */ 307e5c89e4eSSatish Balay if (line > 0 && line < 50000) { 308e5c89e4eSSatish Balay head->lineno = line; 309e5c89e4eSSatish Balay head->filename = file; 310e5c89e4eSSatish Balay head->functionname = function; 311e5c89e4eSSatish Balay head->dirname = dir; 312e5c89e4eSSatish Balay } else { 313e5c89e4eSSatish Balay head->lineno = - head->lineno; 314e5c89e4eSSatish Balay } 315e5c89e4eSSatish Balay /* zero out memory - helps to find some reuse of already freed memory */ 316e5c89e4eSSatish Balay ierr = PetscMemzero(aa,head->size);CHKERRQ(ierr); 317e5c89e4eSSatish Balay 318e5c89e4eSSatish Balay TRallocated -= head->size; 319e5c89e4eSSatish Balay TRfrags --; 320e5c89e4eSSatish Balay if (head->prev) head->prev->next = head->next; 321e5c89e4eSSatish Balay else TRhead = head->next; 322e5c89e4eSSatish Balay 323e5c89e4eSSatish Balay if (head->next) head->next->prev = head->prev; 324e5c89e4eSSatish Balay ierr = PetscFreeAlign(a,line,function,file,dir);CHKERRQ(ierr); 325e5c89e4eSSatish Balay PetscFunctionReturn(0); 326e5c89e4eSSatish Balay } 327e5c89e4eSSatish Balay 328e5c89e4eSSatish Balay 329e5c89e4eSSatish Balay #undef __FUNCT__ 330e5c89e4eSSatish Balay #define __FUNCT__ "PetscMemoryShowUsage" 331fe7fb379SMatthew Knepley /*@C 332e5c89e4eSSatish Balay PetscMemoryShowUsage - Shows the amount of memory currently being used 333e5c89e4eSSatish Balay in a communicator. 334e5c89e4eSSatish Balay 335e5c89e4eSSatish Balay Collective on PetscViewer 336e5c89e4eSSatish Balay 337e5c89e4eSSatish Balay Input Parameter: 338e5c89e4eSSatish Balay + viewer - the viewer that defines the communicator 339e5c89e4eSSatish Balay - message - string printed before values 340e5c89e4eSSatish Balay 341e5c89e4eSSatish Balay Level: intermediate 342e5c89e4eSSatish Balay 343e5c89e4eSSatish Balay Concepts: memory usage 344e5c89e4eSSatish Balay 3451bb97394SVictor Eijkhout .seealso: PetscMallocDump(), PetscMemoryGetCurrentUsage() 346e5c89e4eSSatish Balay @*/ 347e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMemoryShowUsage(PetscViewer viewer,const char message[]) 348e5c89e4eSSatish Balay { 349e5c89e4eSSatish Balay PetscLogDouble allocated,maximum,resident,residentmax; 350e5c89e4eSSatish Balay PetscErrorCode ierr; 351e5c89e4eSSatish Balay PetscMPIInt rank; 352e5c89e4eSSatish Balay MPI_Comm comm; 353e5c89e4eSSatish Balay 354e5c89e4eSSatish Balay PetscFunctionBegin; 355e5c89e4eSSatish Balay if (!viewer) viewer = PETSC_VIEWER_STDOUT_WORLD; 356e5c89e4eSSatish Balay ierr = PetscMallocGetCurrentUsage(&allocated);CHKERRQ(ierr); 357e5c89e4eSSatish Balay ierr = PetscMallocGetMaximumUsage(&maximum);CHKERRQ(ierr); 358e5c89e4eSSatish Balay ierr = PetscMemoryGetCurrentUsage(&resident);CHKERRQ(ierr); 359e5c89e4eSSatish Balay ierr = PetscMemoryGetMaximumUsage(&residentmax);CHKERRQ(ierr); 360e5c89e4eSSatish Balay if (residentmax > 0) residentmax = PetscMax(resident,residentmax); 361e5c89e4eSSatish Balay ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 362e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 363e5c89e4eSSatish Balay ierr = PetscViewerASCIIPrintf(viewer,message);CHKERRQ(ierr); 364e5c89e4eSSatish Balay if (resident && residentmax && allocated) { 365e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g max process memory %g\n",rank,allocated,maximum,rank,resident,residentmax);CHKERRQ(ierr); 366e5c89e4eSSatish Balay } else if (resident && residentmax) { 367e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Run with -malloc to get statistics on PetscMalloc() calls\n[%d]Current process memory %g max process memory %g\n",rank,rank,resident,residentmax);CHKERRQ(ierr); 368e5c89e4eSSatish Balay } else if (resident && allocated) { 369e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g, run with -memory_info to get max memory usage\n",rank,allocated,maximum,rank,resident);CHKERRQ(ierr); 370e5c89e4eSSatish Balay } else if (allocated) { 371e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]OS cannot compute process memory\n",rank,allocated,maximum,rank);CHKERRQ(ierr); 372e5c89e4eSSatish Balay } else { 373e5c89e4eSSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"Run with -malloc to get statistics on PetscMalloc() calls\nOS cannot compute process memory\n");CHKERRQ(ierr); 374e5c89e4eSSatish Balay } 375e5c89e4eSSatish Balay ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 376e5c89e4eSSatish Balay PetscFunctionReturn(0); 377e5c89e4eSSatish Balay } 378e5c89e4eSSatish Balay 379e5c89e4eSSatish Balay #undef __FUNCT__ 380e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetCurrentUsage" 381e5c89e4eSSatish Balay /*@C 382e5c89e4eSSatish Balay PetscMallocGetCurrentUsage - gets the current amount of memory used that was PetscMalloc()ed 383e5c89e4eSSatish Balay 384e5c89e4eSSatish Balay Not Collective 385e5c89e4eSSatish Balay 386e5c89e4eSSatish Balay Output Parameters: 387e5c89e4eSSatish Balay . space - number of bytes currently allocated 388e5c89e4eSSatish Balay 389e5c89e4eSSatish Balay Level: intermediate 390e5c89e4eSSatish Balay 391e5c89e4eSSatish Balay Concepts: memory usage 392e5c89e4eSSatish Balay 393e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(), 394e5c89e4eSSatish Balay PetscMemoryGetMaximumUsage() 395e5c89e4eSSatish Balay @*/ 396e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocGetCurrentUsage(PetscLogDouble *space) 397e5c89e4eSSatish Balay { 398e5c89e4eSSatish Balay PetscFunctionBegin; 399e5c89e4eSSatish Balay *space = (PetscLogDouble) TRallocated; 400e5c89e4eSSatish Balay PetscFunctionReturn(0); 401e5c89e4eSSatish Balay } 402e5c89e4eSSatish Balay 403e5c89e4eSSatish Balay #undef __FUNCT__ 404e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetMaximumUsage" 405e5c89e4eSSatish Balay /*@C 406e5c89e4eSSatish Balay PetscMallocGetMaximumUsage - gets the maximum amount of memory used that was PetscMalloc()ed at any time 407e5c89e4eSSatish Balay during this run. 408e5c89e4eSSatish Balay 409e5c89e4eSSatish Balay Not Collective 410e5c89e4eSSatish Balay 411e5c89e4eSSatish Balay Output Parameters: 412e5c89e4eSSatish Balay . space - maximum number of bytes ever allocated at one time 413e5c89e4eSSatish Balay 414e5c89e4eSSatish Balay Level: intermediate 415e5c89e4eSSatish Balay 416e5c89e4eSSatish Balay Concepts: memory usage 417e5c89e4eSSatish Balay 418e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(), 419e5c89e4eSSatish Balay PetscMemoryGetCurrentUsage() 420e5c89e4eSSatish Balay @*/ 421e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocGetMaximumUsage(PetscLogDouble *space) 422e5c89e4eSSatish Balay { 423e5c89e4eSSatish Balay PetscFunctionBegin; 424e5c89e4eSSatish Balay *space = (PetscLogDouble) TRMaxMem; 425e5c89e4eSSatish Balay PetscFunctionReturn(0); 426e5c89e4eSSatish Balay } 427e5c89e4eSSatish Balay 428e5c89e4eSSatish Balay #undef __FUNCT__ 429e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDump" 430e5c89e4eSSatish Balay /*@C 431e5c89e4eSSatish Balay PetscMallocDump - Dumps the allocated memory blocks to a file. The information 432e5c89e4eSSatish Balay printed is: size of space (in bytes), address of space, id of space, 433e5c89e4eSSatish Balay file in which space was allocated, and line number at which it was 434e5c89e4eSSatish Balay allocated. 435e5c89e4eSSatish Balay 436e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 437e5c89e4eSSatish Balay 438e5c89e4eSSatish Balay Input Parameter: 439e5c89e4eSSatish Balay . fp - file pointer. If fp is NULL, stdout is assumed. 440e5c89e4eSSatish Balay 441e5c89e4eSSatish Balay Options Database Key: 442e5c89e4eSSatish Balay . -malloc_dump - Dumps unfreed memory during call to PetscFinalize() 443e5c89e4eSSatish Balay 444e5c89e4eSSatish Balay Level: intermediate 445e5c89e4eSSatish Balay 446e5c89e4eSSatish Balay Fortran Note: 447e5c89e4eSSatish Balay The calling sequence in Fortran is PetscMallocDump(integer ierr) 448e5c89e4eSSatish Balay The fp defaults to stdout. 449e5c89e4eSSatish Balay 450e5c89e4eSSatish Balay Notes: uses MPI_COMM_WORLD, because this may be called in PetscFinalize() after PETSC_COMM_WORLD 451e5c89e4eSSatish Balay has been freed. 452e5c89e4eSSatish Balay 453e5c89e4eSSatish Balay Concepts: memory usage 454e5c89e4eSSatish Balay Concepts: memory bleeding 455e5c89e4eSSatish Balay Concepts: bleeding memory 456e5c89e4eSSatish Balay 4579e9a1f8fSvictor .seealso: PetscMallocGetCurrentUsage(), PetscMallocDumpLog() 458e5c89e4eSSatish Balay @*/ 459e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocDump(FILE *fp) 460e5c89e4eSSatish Balay { 461e5c89e4eSSatish Balay TRSPACE *head; 462e5c89e4eSSatish Balay PetscErrorCode ierr; 463e5c89e4eSSatish Balay PetscMPIInt rank; 464e5c89e4eSSatish Balay 465e5c89e4eSSatish Balay PetscFunctionBegin; 466e5c89e4eSSatish Balay ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr); 467da9f1d6bSBarry Smith if (!fp) fp = PETSC_STDOUT; 468e5c89e4eSSatish Balay if (TRallocated > 0) { 469e5c89e4eSSatish Balay fprintf(fp,"[%d]Total space allocated %.0f bytes\n",rank,(PetscLogDouble)TRallocated); 470e5c89e4eSSatish Balay } 471e5c89e4eSSatish Balay head = TRhead; 472e5c89e4eSSatish Balay while (head) { 473e5c89e4eSSatish Balay fprintf(fp,"[%2d]%.0f bytes %s() line %d in %s%s\n",rank,(PetscLogDouble)head->size,head->functionname,head->lineno,head->dirname,head->filename); 474e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 475e5c89e4eSSatish Balay ierr = PetscStackPrint(&head->stack,fp);CHKERRQ(ierr); 476e5c89e4eSSatish Balay #endif 477e5c89e4eSSatish Balay head = head->next; 478e5c89e4eSSatish Balay } 479e5c89e4eSSatish Balay PetscFunctionReturn(0); 480e5c89e4eSSatish Balay } 481e5c89e4eSSatish Balay 482e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */ 483e5c89e4eSSatish Balay 484e5c89e4eSSatish Balay #undef __FUNCT__ 485e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocSetDumpLog" 486e5c89e4eSSatish Balay /*@C 487e5c89e4eSSatish Balay PetscMallocSetDumpLog - Activates logging of all calls to PetscMalloc(). 488e5c89e4eSSatish Balay 489e5c89e4eSSatish Balay Not Collective 490e5c89e4eSSatish Balay 491e5c89e4eSSatish Balay Options Database Key: 492e5c89e4eSSatish Balay . -malloc_log - Activates PetscMallocDumpLog() 493e5c89e4eSSatish Balay 494e5c89e4eSSatish Balay Level: advanced 495e5c89e4eSSatish Balay 496e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog() 497e5c89e4eSSatish Balay @*/ 498e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocSetDumpLog(void) 499e5c89e4eSSatish Balay { 50021b680ceSJed Brown PetscErrorCode ierr; 50121b680ceSJed Brown 502e5c89e4eSSatish Balay PetscFunctionBegin; 503e5c89e4eSSatish Balay PetscLogMalloc = 0; 50421b680ceSJed Brown ierr = PetscMemorySetGetMaximumUsage();CHKERRQ(ierr); 505e5c89e4eSSatish Balay PetscFunctionReturn(0); 506e5c89e4eSSatish Balay } 507e5c89e4eSSatish Balay 508e5c89e4eSSatish Balay #undef __FUNCT__ 509e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDumpLog" 510e5c89e4eSSatish Balay /*@C 511e5c89e4eSSatish Balay PetscMallocDumpLog - Dumps the log of all calls to PetscMalloc(); also calls 51221b680ceSJed Brown PetscMemoryGetMaximumUsage() 513e5c89e4eSSatish Balay 514e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 515e5c89e4eSSatish Balay 516e5c89e4eSSatish Balay Input Parameter: 517e5c89e4eSSatish Balay . fp - file pointer; or PETSC_NULL 518e5c89e4eSSatish Balay 519e5c89e4eSSatish Balay Options Database Key: 520e5c89e4eSSatish Balay . -malloc_log - Activates PetscMallocDumpLog() 521e5c89e4eSSatish Balay 522e5c89e4eSSatish Balay Level: advanced 523e5c89e4eSSatish Balay 524e5c89e4eSSatish Balay Fortran Note: 525e5c89e4eSSatish Balay The calling sequence in Fortran is PetscMallocDumpLog(integer ierr) 526e5c89e4eSSatish Balay The fp defaults to stdout. 527e5c89e4eSSatish Balay 528e5c89e4eSSatish Balay .seealso: PetscMallocGetCurrentUsage(), PetscMallocDump(), PetscMallocSetDumpLog() 529e5c89e4eSSatish Balay @*/ 530e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocDumpLog(FILE *fp) 531e5c89e4eSSatish Balay { 532e5c89e4eSSatish Balay PetscInt i,j,n,dummy,*perm; 533e5c89e4eSSatish Balay size_t *shortlength; 534f56c2debSBarry Smith int *shortcount,err; 535e5c89e4eSSatish Balay PetscMPIInt rank,size,tag = 1212 /* very bad programming */; 536e5c89e4eSSatish Balay PetscTruth match; 537e5c89e4eSSatish Balay const char **shortfunction; 538e5c89e4eSSatish Balay PetscLogDouble rss; 539e5c89e4eSSatish Balay MPI_Status status; 540e5c89e4eSSatish Balay PetscErrorCode ierr; 541e5c89e4eSSatish Balay 542e5c89e4eSSatish Balay PetscFunctionBegin; 543e5c89e4eSSatish Balay ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr); 544e5c89e4eSSatish Balay ierr = MPI_Comm_size(MPI_COMM_WORLD,&size);CHKERRQ(ierr); 545e5c89e4eSSatish Balay /* 546e5c89e4eSSatish Balay Try to get the data printed in order by processor. This will only sometimes work 547e5c89e4eSSatish Balay */ 548f56c2debSBarry Smith err = fflush(fp); 549f56c2debSBarry Smith if (err) SETERRQ(PETSC_ERR_SYS,"fflush() failed on file"); 550f56c2debSBarry Smith 551e5c89e4eSSatish Balay ierr = MPI_Barrier(MPI_COMM_WORLD);CHKERRQ(ierr); 552e5c89e4eSSatish Balay if (rank) { 553e5c89e4eSSatish Balay ierr = MPI_Recv(&dummy,1,MPIU_INT,rank-1,tag,MPI_COMM_WORLD,&status);CHKERRQ(ierr); 554e5c89e4eSSatish Balay } 555e5c89e4eSSatish Balay 556da9f1d6bSBarry Smith if (!fp) fp = PETSC_STDOUT; 557f3d65365SJed Brown ierr = PetscMemoryGetMaximumUsage(&rss);CHKERRQ(ierr); 558e5c89e4eSSatish Balay if (rss) { 559f3d65365SJed Brown ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f maximum size of entire process %.0f\n",rank,(PetscLogDouble)TRMaxMem,rss);CHKERRQ(ierr); 560e5c89e4eSSatish Balay } else { 561e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f OS cannot compute size of entire process\n",rank,(PetscLogDouble)TRMaxMem);CHKERRQ(ierr); 562e5c89e4eSSatish Balay } 56369c4ddd3SBarry Smith if (PetscLogMalloc < 0) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"PetscMallocDumpLog() called without call to PetscMallocSetDumpLog() this is often due to\n setting the option -malloc_log AFTER PetscInitialize() with PetscOptionsInsert() or PetscOptionsInsertFile()"); 56459ffdab8SBarry Smith shortcount = (int*)malloc(PetscLogMalloc*sizeof(int));if (!shortcount) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 565e5c89e4eSSatish Balay shortlength = (size_t*)malloc(PetscLogMalloc*sizeof(size_t));if (!shortlength) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 566e5c89e4eSSatish Balay shortfunction = (const char**)malloc(PetscLogMalloc*sizeof(char *));if (!shortfunction) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 567e5c89e4eSSatish Balay shortfunction[0] = PetscLogMallocFunction[0]; 568e5c89e4eSSatish Balay shortlength[0] = PetscLogMallocLength[0]; 56959ffdab8SBarry Smith shortcount[0] = 0; 570e5c89e4eSSatish Balay n = 1; 571e5c89e4eSSatish Balay for (i=1; i<PetscLogMalloc; i++) { 572e5c89e4eSSatish Balay for (j=0; j<n; j++) { 573e5c89e4eSSatish Balay ierr = PetscStrcmp(shortfunction[j],PetscLogMallocFunction[i],&match);CHKERRQ(ierr); 574e5c89e4eSSatish Balay if (match) { 575e5c89e4eSSatish Balay shortlength[j] += PetscLogMallocLength[i]; 57659ffdab8SBarry Smith shortcount[j]++; 577e5c89e4eSSatish Balay goto foundit; 578e5c89e4eSSatish Balay } 579e5c89e4eSSatish Balay } 580e5c89e4eSSatish Balay shortfunction[n] = PetscLogMallocFunction[i]; 581e5c89e4eSSatish Balay shortlength[n] = PetscLogMallocLength[i]; 58259ffdab8SBarry Smith shortcount[n] = 1; 583e5c89e4eSSatish Balay n++; 584e5c89e4eSSatish Balay foundit:; 585e5c89e4eSSatish Balay } 586e5c89e4eSSatish Balay 587e5c89e4eSSatish Balay perm = (PetscInt*)malloc(n*sizeof(PetscInt));if (!perm) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 588e5c89e4eSSatish Balay for (i=0; i<n; i++) perm[i] = i; 589e5c89e4eSSatish Balay ierr = PetscSortStrWithPermutation(n,(const char **)shortfunction,perm);CHKERRQ(ierr); 590e5c89e4eSSatish Balay 591e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Memory usage sorted by function\n",rank);CHKERRQ(ierr); 592e5c89e4eSSatish Balay for (i=0; i<n; i++) { 59359ffdab8SBarry Smith ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] %d %.0f %s()\n",rank,shortcount[perm[i]],(PetscLogDouble)shortlength[perm[i]],shortfunction[perm[i]]);CHKERRQ(ierr); 594e5c89e4eSSatish Balay } 595e5c89e4eSSatish Balay free(perm); 596e5c89e4eSSatish Balay free(shortlength); 59759ffdab8SBarry Smith free(shortcount); 598e5c89e4eSSatish Balay free((char **)shortfunction); 599f56c2debSBarry Smith err = fflush(fp); 600f56c2debSBarry Smith if (err) SETERRQ(PETSC_ERR_SYS,"fflush() failed on file"); 601e5c89e4eSSatish Balay if (rank != size-1) { 602e5c89e4eSSatish Balay ierr = MPI_Send(&dummy,1,MPIU_INT,rank+1,tag,MPI_COMM_WORLD);CHKERRQ(ierr); 603e5c89e4eSSatish Balay } 604e5c89e4eSSatish Balay PetscFunctionReturn(0); 605e5c89e4eSSatish Balay } 606e5c89e4eSSatish Balay 607e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */ 608e5c89e4eSSatish Balay 609e5c89e4eSSatish Balay #undef __FUNCT__ 610e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDebug" 611e5c89e4eSSatish Balay /*@C 612e5c89e4eSSatish Balay PetscMallocDebug - Turns on/off debugging for the memory management routines. 613e5c89e4eSSatish Balay 614e5c89e4eSSatish Balay Not Collective 615e5c89e4eSSatish Balay 616e5c89e4eSSatish Balay Input Parameter: 617e5c89e4eSSatish Balay . level - PETSC_TRUE or PETSC_FALSE 618e5c89e4eSSatish Balay 619e5c89e4eSSatish Balay Level: intermediate 620e5c89e4eSSatish Balay 621e5c89e4eSSatish Balay .seealso: CHKMEMQ(), PetscMallocValidate() 622e5c89e4eSSatish Balay @*/ 623e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocDebug(PetscTruth level) 624e5c89e4eSSatish Balay { 625e5c89e4eSSatish Balay PetscFunctionBegin; 626e5c89e4eSSatish Balay TRdebugLevel = level; 627e5c89e4eSSatish Balay PetscFunctionReturn(0); 628e5c89e4eSSatish Balay } 629