1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Interface to malloc() and free(). This code allows for 4e5c89e4eSSatish Balay logging of memory usage and some error checking 5e5c89e4eSSatish Balay */ 6e5c89e4eSSatish Balay #include "petsc.h" /*I "petsc.h" I*/ 7e5c89e4eSSatish Balay #include "petscsys.h" 8e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 9e5c89e4eSSatish Balay #include <stdlib.h> 10e5c89e4eSSatish Balay #endif 11e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MALLOC_H) 12e5c89e4eSSatish Balay #include <malloc.h> 13e5c89e4eSSatish Balay #endif 14e5c89e4eSSatish Balay #include "petscfix.h" 15e5c89e4eSSatish Balay 16e5c89e4eSSatish Balay 17e5c89e4eSSatish Balay /* 18e5c89e4eSSatish Balay These are defined in mal.c and ensure that malloced space is PetscScalar aligned 19e5c89e4eSSatish Balay */ 20e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscMallocAlign(size_t,int,const char[],const char[],const char[],void**); 21e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscFreeAlign(void*,int,const char[],const char[],const char[]); 22e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscTrMallocDefault(size_t,int,const char[],const char[],const char[],void**); 23e5c89e4eSSatish Balay EXTERN PetscErrorCode PETSC_DLLEXPORT PetscTrFreeDefault(void*,int,const char[],const char[],const char[]); 24e5c89e4eSSatish Balay 25e5c89e4eSSatish Balay #undef __FUNCT__ 26e5c89e4eSSatish Balay #define __FUNCT__ "PetscSetUseTrMalloc_Private" 27e5c89e4eSSatish Balay PetscErrorCode PetscSetUseTrMalloc_Private(void) 28e5c89e4eSSatish Balay { 29e5c89e4eSSatish Balay PetscErrorCode ierr; 30e5c89e4eSSatish Balay 31e5c89e4eSSatish Balay PetscFunctionBegin; 32e5c89e4eSSatish Balay ierr = PetscSetMalloc(PetscTrMallocDefault,PetscTrFreeDefault);CHKERRQ(ierr); 33e5c89e4eSSatish Balay PetscFunctionReturn(0); 34e5c89e4eSSatish Balay } 35e5c89e4eSSatish Balay 36e5c89e4eSSatish Balay #if (PETSC_SIZEOF_VOID_P == 8) 37e5c89e4eSSatish Balay #define TR_ALIGN_BYTES 8 38e5c89e4eSSatish Balay #define TR_ALIGN_MASK 0x7 39e5c89e4eSSatish Balay #else 40e5c89e4eSSatish Balay #define TR_ALIGN_BYTES 4 41e5c89e4eSSatish Balay #define TR_ALIGN_MASK 0x3 42e5c89e4eSSatish Balay #endif 43e5c89e4eSSatish Balay 44e5c89e4eSSatish Balay #define COOKIE_VALUE 0xf0e0d0c9 45e5c89e4eSSatish Balay #define ALREADY_FREED 0x0f0e0d9c 46e5c89e4eSSatish Balay #define MAX_TR_STACK 20 47e5c89e4eSSatish Balay #define TR_MALLOC 0x1 48e5c89e4eSSatish Balay #define TR_FREE 0x2 49e5c89e4eSSatish Balay 50e5c89e4eSSatish Balay typedef struct _trSPACE { 51e5c89e4eSSatish Balay size_t size; 52e5c89e4eSSatish Balay int id; 53e5c89e4eSSatish Balay int lineno; 54e5c89e4eSSatish Balay const char *filename; 55e5c89e4eSSatish Balay const char *functionname; 56e5c89e4eSSatish Balay const char *dirname; 57e5c89e4eSSatish Balay unsigned long cookie; 58e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 59e5c89e4eSSatish Balay PetscStack stack; 60e5c89e4eSSatish Balay #endif 61e5c89e4eSSatish Balay struct _trSPACE *next,*prev; 62e5c89e4eSSatish Balay } TRSPACE; 63e5c89e4eSSatish Balay 64e5c89e4eSSatish Balay /* HEADER_DOUBLES is the number of doubles in a PetscMalloc() header */ 65e5c89e4eSSatish Balay /* We have to be careful about alignment rules here */ 66e5c89e4eSSatish Balay 67e5c89e4eSSatish Balay #define HEADER_DOUBLES sizeof(TRSPACE)/sizeof(double)+1 68e5c89e4eSSatish Balay 69e5c89e4eSSatish Balay 70e5c89e4eSSatish Balay /* This union is used to insure that the block passed to the user is 71e5c89e4eSSatish Balay aligned on a double boundary */ 72e5c89e4eSSatish Balay typedef union { 73e5c89e4eSSatish Balay TRSPACE sp; 74e5c89e4eSSatish Balay double v[HEADER_DOUBLES]; 75e5c89e4eSSatish Balay } TrSPACE; 76e5c89e4eSSatish Balay 77e5c89e4eSSatish Balay static size_t TRallocated = 0; 78e5c89e4eSSatish Balay static int TRfrags = 0; 79e5c89e4eSSatish Balay static TRSPACE *TRhead = 0; 80e5c89e4eSSatish Balay static int TRid = 0; 81e5c89e4eSSatish Balay static PetscTruth TRdebugLevel = PETSC_FALSE; 82e5c89e4eSSatish Balay static size_t TRMaxMem = 0; 83e5c89e4eSSatish Balay /* 84e5c89e4eSSatish Balay Arrays to log information on all Mallocs 85e5c89e4eSSatish Balay */ 86e5c89e4eSSatish Balay static int PetscLogMallocMax = 10000,PetscLogMalloc = -1; 87e5c89e4eSSatish Balay static size_t *PetscLogMallocLength; 88e5c89e4eSSatish Balay static const char **PetscLogMallocDirectory,**PetscLogMallocFile,**PetscLogMallocFunction; 89e5c89e4eSSatish Balay 90e5c89e4eSSatish Balay #undef __FUNCT__ 91e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocValidate" 92e5c89e4eSSatish Balay /*@C 93e5c89e4eSSatish Balay PetscMallocValidate - Test the memory for corruption. This can be used to 94e5c89e4eSSatish Balay check for memory overwrites. 95e5c89e4eSSatish Balay 96e5c89e4eSSatish Balay Input Parameter: 97e5c89e4eSSatish Balay + line - line number where call originated. 98e5c89e4eSSatish Balay . function - name of function calling 99e5c89e4eSSatish Balay . file - file where function is 100e5c89e4eSSatish Balay - dir - directory where function is 101e5c89e4eSSatish Balay 102e5c89e4eSSatish Balay Return value: 103e5c89e4eSSatish Balay The number of errors detected. 104e5c89e4eSSatish Balay 105e5c89e4eSSatish Balay Output Effect: 106e5c89e4eSSatish Balay Error messages are written to stdout. 107e5c89e4eSSatish Balay 108e5c89e4eSSatish Balay Level: advanced 109e5c89e4eSSatish Balay 110e5c89e4eSSatish Balay Notes: 111e5c89e4eSSatish Balay You should generally use CHKMEMQ as a short cut for calling this 112e5c89e4eSSatish Balay routine. 113e5c89e4eSSatish Balay 114e5c89e4eSSatish Balay The line, function, file and dir are given by the C preprocessor as 115e5c89e4eSSatish Balay __LINE__, __FUNCT__, __FILE__, and __DIR__ 116e5c89e4eSSatish Balay 117e5c89e4eSSatish Balay The Fortran calling sequence is simply PetscMallocValidate(ierr) 118e5c89e4eSSatish Balay 119e5c89e4eSSatish Balay No output is generated if there are no problems detected. 120e5c89e4eSSatish Balay 121e5c89e4eSSatish Balay .seealso: CHKMEMQ 122e5c89e4eSSatish Balay 123e5c89e4eSSatish Balay @*/ 124e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocValidate(int line,const char function[],const char file[],const char dir[]) 125e5c89e4eSSatish Balay { 1266c093d5bSvictor TRSPACE *head,*lasthead; 127e5c89e4eSSatish Balay char *a; 128e5c89e4eSSatish Balay unsigned long *nend; 129e5c89e4eSSatish Balay 130e5c89e4eSSatish Balay PetscFunctionBegin; 1316c093d5bSvictor head = TRhead; lasthead = NULL; 132e5c89e4eSSatish Balay while (head) { 133e5c89e4eSSatish Balay if (head->cookie != COOKIE_VALUE) { 134e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s%s\n",function,line,dir,file); 135e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory at address %p is corrupted\n",head); 136e5c89e4eSSatish Balay (*PetscErrorPrintf)("Probably write past beginning or end of array\n"); 1376c093d5bSvictor if (lasthead) 1386c093d5bSvictor (*PetscErrorPrintf)("Last intact block allocated in %s() line %d in %s%s\n",lasthead->functionname,lasthead->lineno,lasthead->dirname,lasthead->filename); 139e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC," "); 140e5c89e4eSSatish Balay } 141e5c89e4eSSatish Balay a = (char *)(((TrSPACE*)head) + 1); 142e5c89e4eSSatish Balay nend = (unsigned long *)(a + head->size); 143e5c89e4eSSatish Balay if (*nend != COOKIE_VALUE) { 144e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s%s\n",function,line,dir,file); 145e5c89e4eSSatish Balay if (*nend == ALREADY_FREED) { 146e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p already freed\n",head->id,(PetscLogDouble)head->size,a); 147e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC," "); 148e5c89e4eSSatish Balay } else { 149e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a); 150e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory originally allocated in %s() line %d in %s%s\n",head->functionname,head->lineno,head->dirname,head->filename); 151e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC," "); 152e5c89e4eSSatish Balay } 153e5c89e4eSSatish Balay } 1546c093d5bSvictor lasthead = head; 155e5c89e4eSSatish Balay head = head->next; 156e5c89e4eSSatish Balay } 157e5c89e4eSSatish Balay PetscFunctionReturn(0); 158e5c89e4eSSatish Balay } 159e5c89e4eSSatish Balay 160e5c89e4eSSatish Balay #undef __FUNCT__ 161e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrMallocDefault" 162e5c89e4eSSatish Balay /* 163e5c89e4eSSatish Balay PetscTrMallocDefault - Malloc with tracing. 164e5c89e4eSSatish Balay 165e5c89e4eSSatish Balay Input Parameters: 166e5c89e4eSSatish Balay + a - number of bytes to allocate 167e5c89e4eSSatish Balay . lineno - line number where used. Use __LINE__ for this 168e5c89e4eSSatish Balay . function - function calling routine. Use __FUNCT__ for this 169e5c89e4eSSatish Balay . filename - file name where used. Use __FILE__ for this 170e5c89e4eSSatish Balay - dir - directory where file is. Use __SDIR__ for this 171e5c89e4eSSatish Balay 172e5c89e4eSSatish Balay Returns: 173e5c89e4eSSatish Balay double aligned pointer to requested storage, or null if not 174e5c89e4eSSatish Balay available. 175e5c89e4eSSatish Balay */ 176e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscTrMallocDefault(size_t a,int lineno,const char function[],const char filename[],const char dir[],void**result) 177e5c89e4eSSatish Balay { 178e5c89e4eSSatish Balay TRSPACE *head; 179e5c89e4eSSatish Balay char *inew; 180e5c89e4eSSatish Balay size_t nsize; 181e5c89e4eSSatish Balay PetscErrorCode ierr; 182e5c89e4eSSatish Balay 183e5c89e4eSSatish Balay PetscFunctionBegin; 1842a6744ebSBarry Smith if (!a) { 1852a6744ebSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Trying to malloc zero size array"); 1862a6744ebSBarry Smith } 1872a6744ebSBarry Smith 188e5c89e4eSSatish Balay if (TRdebugLevel) { 189e5c89e4eSSatish Balay ierr = PetscMallocValidate(lineno,function,filename,dir); if (ierr) PetscFunctionReturn(ierr); 190e5c89e4eSSatish Balay } 191e5c89e4eSSatish Balay 192e5c89e4eSSatish Balay nsize = a; 193e5c89e4eSSatish Balay if (nsize & TR_ALIGN_MASK) nsize += (TR_ALIGN_BYTES - (nsize & TR_ALIGN_MASK)); 194e5c89e4eSSatish Balay ierr = PetscMallocAlign(nsize+sizeof(TrSPACE)+sizeof(PetscScalar),lineno,function,filename,dir,(void**)&inew);CHKERRQ(ierr); 195e5c89e4eSSatish Balay 196e5c89e4eSSatish Balay head = (TRSPACE *)inew; 197e5c89e4eSSatish Balay inew += sizeof(TrSPACE); 198e5c89e4eSSatish Balay 199e5c89e4eSSatish Balay if (TRhead) TRhead->prev = head; 200e5c89e4eSSatish Balay head->next = TRhead; 201e5c89e4eSSatish Balay TRhead = head; 202e5c89e4eSSatish Balay head->prev = 0; 203e5c89e4eSSatish Balay head->size = nsize; 204e5c89e4eSSatish Balay head->id = TRid; 205e5c89e4eSSatish Balay head->lineno = lineno; 206e5c89e4eSSatish Balay 207e5c89e4eSSatish Balay head->filename = filename; 208e5c89e4eSSatish Balay head->functionname = function; 209e5c89e4eSSatish Balay head->dirname = dir; 210e5c89e4eSSatish Balay head->cookie = COOKIE_VALUE; 211e5c89e4eSSatish Balay *(unsigned long *)(inew + nsize) = COOKIE_VALUE; 212e5c89e4eSSatish Balay 213e5c89e4eSSatish Balay TRallocated += nsize; 214e5c89e4eSSatish Balay if (TRallocated > TRMaxMem) { 215e5c89e4eSSatish Balay TRMaxMem = TRallocated; 216e5c89e4eSSatish Balay } 217e5c89e4eSSatish Balay TRfrags++; 218e5c89e4eSSatish Balay 219e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 220e5c89e4eSSatish Balay ierr = PetscStackCopy(petscstack,&head->stack);CHKERRQ(ierr); 221e5c89e4eSSatish Balay #endif 222e5c89e4eSSatish Balay 223e5c89e4eSSatish Balay /* 224e5c89e4eSSatish Balay Allow logging of all mallocs made 225e5c89e4eSSatish Balay */ 226e5c89e4eSSatish Balay if (PetscLogMalloc > -1 && PetscLogMalloc < PetscLogMallocMax) { 227e5c89e4eSSatish Balay if (!PetscLogMalloc) { 228e5c89e4eSSatish Balay PetscLogMallocLength = (size_t*)malloc(PetscLogMallocMax*sizeof(size_t)); 229e5c89e4eSSatish Balay if (!PetscLogMallocLength) SETERRQ(PETSC_ERR_MEM," "); 230e5c89e4eSSatish Balay PetscLogMallocDirectory = (const char**)malloc(PetscLogMallocMax*sizeof(char**)); 231e5c89e4eSSatish Balay if (!PetscLogMallocDirectory) SETERRQ(PETSC_ERR_MEM," "); 232e5c89e4eSSatish Balay PetscLogMallocFile = (const char**)malloc(PetscLogMallocMax*sizeof(char**)); 233e5c89e4eSSatish Balay if (!PetscLogMallocFile) SETERRQ(PETSC_ERR_MEM," "); 234e5c89e4eSSatish Balay PetscLogMallocFunction = (const char**)malloc(PetscLogMallocMax*sizeof(char**)); 235e5c89e4eSSatish Balay if (!PetscLogMallocFunction) SETERRQ(PETSC_ERR_MEM," "); 236e5c89e4eSSatish Balay } 237e5c89e4eSSatish Balay PetscLogMallocLength[PetscLogMalloc] = nsize; 238e5c89e4eSSatish Balay PetscLogMallocDirectory[PetscLogMalloc] = dir; 239e5c89e4eSSatish Balay PetscLogMallocFile[PetscLogMalloc] = filename; 240e5c89e4eSSatish Balay PetscLogMallocFunction[PetscLogMalloc++] = function; 241e5c89e4eSSatish Balay } 242e5c89e4eSSatish Balay *result = (void*)inew; 243e5c89e4eSSatish Balay PetscFunctionReturn(0); 244e5c89e4eSSatish Balay } 245e5c89e4eSSatish Balay 246e5c89e4eSSatish Balay 247e5c89e4eSSatish Balay #undef __FUNCT__ 248e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrFreeDefault" 249e5c89e4eSSatish Balay /* 250e5c89e4eSSatish Balay PetscTrFreeDefault - Free with tracing. 251e5c89e4eSSatish Balay 252e5c89e4eSSatish Balay Input Parameters: 253e5c89e4eSSatish Balay . a - pointer to a block allocated with PetscTrMalloc 254e5c89e4eSSatish Balay . lineno - line number where used. Use __LINE__ for this 255e5c89e4eSSatish Balay . function - function calling routine. Use __FUNCT__ for this 256e5c89e4eSSatish Balay . file - file name where used. Use __FILE__ for this 257e5c89e4eSSatish Balay . dir - directory where file is. Use __SDIR__ for this 258e5c89e4eSSatish Balay */ 259e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscTrFreeDefault(void *aa,int line,const char function[],const char file[],const char dir[]) 260e5c89e4eSSatish Balay { 261e5c89e4eSSatish Balay char *a = (char*)aa; 262e5c89e4eSSatish Balay TRSPACE *head; 263e5c89e4eSSatish Balay char *ahead; 264e5c89e4eSSatish Balay PetscErrorCode ierr; 265e5c89e4eSSatish Balay unsigned long *nend; 266e5c89e4eSSatish Balay 267e5c89e4eSSatish Balay PetscFunctionBegin; 268e5c89e4eSSatish Balay /* Do not try to handle empty blocks */ 269e5c89e4eSSatish Balay if (!a) { 270e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault called from %s() line %d in %s%s\n",function,line,dir,file); 2712a6744ebSBarry Smith SETERRQ4(PETSC_ERR_ARG_OUTOFRANGE,"Trying to free null block: Free called from %s() line %d in %s%s\n",function,line,dir,file); 272e5c89e4eSSatish Balay } 273e5c89e4eSSatish Balay 274e5c89e4eSSatish Balay if (TRdebugLevel) { 275e5c89e4eSSatish Balay ierr = PetscMallocValidate(line,function,file,dir);CHKERRQ(ierr); 276e5c89e4eSSatish Balay } 277e5c89e4eSSatish Balay 278e5c89e4eSSatish Balay ahead = a; 279e5c89e4eSSatish Balay a = a - sizeof(TrSPACE); 280e5c89e4eSSatish Balay head = (TRSPACE *)a; 281e5c89e4eSSatish Balay 282e5c89e4eSSatish Balay if (head->cookie != COOKIE_VALUE) { 283e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s%s\n",function,line,dir,file); 284e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block at address %p is corrupted; cannot free;\nmay be block not allocated with PetscMalloc()\n",a); 285e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC,"Bad location or corrupted memory"); 286e5c89e4eSSatish Balay } 287e5c89e4eSSatish Balay nend = (unsigned long *)(ahead + head->size); 288e5c89e4eSSatish Balay if (*nend != COOKIE_VALUE) { 289e5c89e4eSSatish Balay if (*nend == ALREADY_FREED) { 290e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s%s\n",function,line,dir,file); 291e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p was already freed\n",head->id,(PetscLogDouble)head->size,a + sizeof(TrSPACE)); 292e5c89e4eSSatish Balay if (head->lineno > 0 && head->lineno < 50000 /* sanity check */) { 293e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block freed in %s() line %d in %s%s\n",head->functionname,head->lineno,head->dirname,head->filename); 294e5c89e4eSSatish Balay } else { 295e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block allocated in %s() line %d in %s%s\n",head->functionname,-head->lineno,head->dirname,head->filename); 296e5c89e4eSSatish Balay } 297e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,"Memory already freed"); 298e5c89e4eSSatish Balay } else { 299e5c89e4eSSatish Balay /* Damaged tail */ 300e5c89e4eSSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s%s\n",function,line,dir,file); 301e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a); 302e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block allocated in %s() line %d in %s%s\n",head->functionname,head->lineno,head->dirname,head->filename); 303e5c89e4eSSatish Balay SETERRQ(PETSC_ERR_MEMC,"Corrupted memory"); 304e5c89e4eSSatish Balay } 305e5c89e4eSSatish Balay } 306e5c89e4eSSatish Balay /* Mark the location freed */ 307e5c89e4eSSatish Balay *nend = ALREADY_FREED; 308e5c89e4eSSatish Balay /* Save location where freed. If we suspect the line number, mark as allocated location */ 309e5c89e4eSSatish Balay if (line > 0 && line < 50000) { 310e5c89e4eSSatish Balay head->lineno = line; 311e5c89e4eSSatish Balay head->filename = file; 312e5c89e4eSSatish Balay head->functionname = function; 313e5c89e4eSSatish Balay head->dirname = dir; 314e5c89e4eSSatish Balay } else { 315e5c89e4eSSatish Balay head->lineno = - head->lineno; 316e5c89e4eSSatish Balay } 317e5c89e4eSSatish Balay /* zero out memory - helps to find some reuse of already freed memory */ 318e5c89e4eSSatish Balay ierr = PetscMemzero(aa,head->size);CHKERRQ(ierr); 319e5c89e4eSSatish Balay 320e5c89e4eSSatish Balay TRallocated -= head->size; 321e5c89e4eSSatish Balay TRfrags --; 322e5c89e4eSSatish Balay if (head->prev) head->prev->next = head->next; 323e5c89e4eSSatish Balay else TRhead = head->next; 324e5c89e4eSSatish Balay 325e5c89e4eSSatish Balay if (head->next) head->next->prev = head->prev; 326e5c89e4eSSatish Balay ierr = PetscFreeAlign(a,line,function,file,dir);CHKERRQ(ierr); 327e5c89e4eSSatish Balay PetscFunctionReturn(0); 328e5c89e4eSSatish Balay } 329e5c89e4eSSatish Balay 330e5c89e4eSSatish Balay 331e5c89e4eSSatish Balay #undef __FUNCT__ 332e5c89e4eSSatish Balay #define __FUNCT__ "PetscMemoryShowUsage" 333fe7fb379SMatthew Knepley /*@C 334e5c89e4eSSatish Balay PetscMemoryShowUsage - Shows the amount of memory currently being used 335e5c89e4eSSatish Balay in a communicator. 336e5c89e4eSSatish Balay 337e5c89e4eSSatish Balay Collective on PetscViewer 338e5c89e4eSSatish Balay 339e5c89e4eSSatish Balay Input Parameter: 340e5c89e4eSSatish Balay + viewer - the viewer that defines the communicator 341e5c89e4eSSatish Balay - message - string printed before values 342e5c89e4eSSatish Balay 343e5c89e4eSSatish Balay Level: intermediate 344e5c89e4eSSatish Balay 345e5c89e4eSSatish Balay Concepts: memory usage 346e5c89e4eSSatish Balay 3471bb97394SVictor Eijkhout .seealso: PetscMallocDump(), PetscMemoryGetCurrentUsage() 348e5c89e4eSSatish Balay @*/ 349e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMemoryShowUsage(PetscViewer viewer,const char message[]) 350e5c89e4eSSatish Balay { 351e5c89e4eSSatish Balay PetscLogDouble allocated,maximum,resident,residentmax; 352e5c89e4eSSatish Balay PetscErrorCode ierr; 353e5c89e4eSSatish Balay PetscMPIInt rank; 354e5c89e4eSSatish Balay MPI_Comm comm; 355e5c89e4eSSatish Balay 356e5c89e4eSSatish Balay PetscFunctionBegin; 357e5c89e4eSSatish Balay if (!viewer) viewer = PETSC_VIEWER_STDOUT_WORLD; 358e5c89e4eSSatish Balay ierr = PetscMallocGetCurrentUsage(&allocated);CHKERRQ(ierr); 359e5c89e4eSSatish Balay ierr = PetscMallocGetMaximumUsage(&maximum);CHKERRQ(ierr); 360e5c89e4eSSatish Balay ierr = PetscMemoryGetCurrentUsage(&resident);CHKERRQ(ierr); 361e5c89e4eSSatish Balay ierr = PetscMemoryGetMaximumUsage(&residentmax);CHKERRQ(ierr); 362e5c89e4eSSatish Balay if (residentmax > 0) residentmax = PetscMax(resident,residentmax); 363e5c89e4eSSatish Balay ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 364e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 365e5c89e4eSSatish Balay ierr = PetscViewerASCIIPrintf(viewer,message);CHKERRQ(ierr); 366e5c89e4eSSatish Balay if (resident && residentmax && allocated) { 367e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g max process memory %g\n",rank,allocated,maximum,rank,resident,residentmax);CHKERRQ(ierr); 368e5c89e4eSSatish Balay } else if (resident && residentmax) { 369e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Run with -malloc to get statistics on PetscMalloc() calls\n[%d]Current process memory %g max process memory %g\n",rank,rank,resident,residentmax);CHKERRQ(ierr); 370e5c89e4eSSatish Balay } else if (resident && allocated) { 371e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g, run with -memory_info to get max memory usage\n",rank,allocated,maximum,rank,resident);CHKERRQ(ierr); 372e5c89e4eSSatish Balay } else if (allocated) { 373e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]OS cannot compute process memory\n",rank,allocated,maximum,rank);CHKERRQ(ierr); 374e5c89e4eSSatish Balay } else { 375e5c89e4eSSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"Run with -malloc to get statistics on PetscMalloc() calls\nOS cannot compute process memory\n");CHKERRQ(ierr); 376e5c89e4eSSatish Balay } 377e5c89e4eSSatish Balay ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 378e5c89e4eSSatish Balay PetscFunctionReturn(0); 379e5c89e4eSSatish Balay } 380e5c89e4eSSatish Balay 381e5c89e4eSSatish Balay #undef __FUNCT__ 382e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetCurrentUsage" 383e5c89e4eSSatish Balay /*@C 384e5c89e4eSSatish Balay PetscMallocGetCurrentUsage - gets the current amount of memory used that was PetscMalloc()ed 385e5c89e4eSSatish Balay 386e5c89e4eSSatish Balay Not Collective 387e5c89e4eSSatish Balay 388e5c89e4eSSatish Balay Output Parameters: 389e5c89e4eSSatish Balay . space - number of bytes currently allocated 390e5c89e4eSSatish Balay 391e5c89e4eSSatish Balay Level: intermediate 392e5c89e4eSSatish Balay 393e5c89e4eSSatish Balay Concepts: memory usage 394e5c89e4eSSatish Balay 395e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(), 396e5c89e4eSSatish Balay PetscMemoryGetMaximumUsage() 397e5c89e4eSSatish Balay @*/ 398e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocGetCurrentUsage(PetscLogDouble *space) 399e5c89e4eSSatish Balay { 400e5c89e4eSSatish Balay PetscFunctionBegin; 401e5c89e4eSSatish Balay *space = (PetscLogDouble) TRallocated; 402e5c89e4eSSatish Balay PetscFunctionReturn(0); 403e5c89e4eSSatish Balay } 404e5c89e4eSSatish Balay 405e5c89e4eSSatish Balay #undef __FUNCT__ 406e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetMaximumUsage" 407e5c89e4eSSatish Balay /*@C 408e5c89e4eSSatish Balay PetscMallocGetMaximumUsage - gets the maximum amount of memory used that was PetscMalloc()ed at any time 409e5c89e4eSSatish Balay during this run. 410e5c89e4eSSatish Balay 411e5c89e4eSSatish Balay Not Collective 412e5c89e4eSSatish Balay 413e5c89e4eSSatish Balay Output Parameters: 414e5c89e4eSSatish Balay . space - maximum number of bytes ever allocated at one time 415e5c89e4eSSatish Balay 416e5c89e4eSSatish Balay Level: intermediate 417e5c89e4eSSatish Balay 418e5c89e4eSSatish Balay Concepts: memory usage 419e5c89e4eSSatish Balay 420e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(), 421e5c89e4eSSatish Balay PetscMemoryGetCurrentUsage() 422e5c89e4eSSatish Balay @*/ 423e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocGetMaximumUsage(PetscLogDouble *space) 424e5c89e4eSSatish Balay { 425e5c89e4eSSatish Balay PetscFunctionBegin; 426e5c89e4eSSatish Balay *space = (PetscLogDouble) TRMaxMem; 427e5c89e4eSSatish Balay PetscFunctionReturn(0); 428e5c89e4eSSatish Balay } 429e5c89e4eSSatish Balay 430e5c89e4eSSatish Balay #undef __FUNCT__ 431e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDump" 432e5c89e4eSSatish Balay /*@C 433e5c89e4eSSatish Balay PetscMallocDump - Dumps the allocated memory blocks to a file. The information 434e5c89e4eSSatish Balay printed is: size of space (in bytes), address of space, id of space, 435e5c89e4eSSatish Balay file in which space was allocated, and line number at which it was 436e5c89e4eSSatish Balay allocated. 437e5c89e4eSSatish Balay 438e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 439e5c89e4eSSatish Balay 440e5c89e4eSSatish Balay Input Parameter: 441e5c89e4eSSatish Balay . fp - file pointer. If fp is NULL, stdout is assumed. 442e5c89e4eSSatish Balay 443e5c89e4eSSatish Balay Options Database Key: 444e5c89e4eSSatish Balay . -malloc_dump - Dumps unfreed memory during call to PetscFinalize() 445e5c89e4eSSatish Balay 446e5c89e4eSSatish Balay Level: intermediate 447e5c89e4eSSatish Balay 448e5c89e4eSSatish Balay Fortran Note: 449e5c89e4eSSatish Balay The calling sequence in Fortran is PetscMallocDump(integer ierr) 450e5c89e4eSSatish Balay The fp defaults to stdout. 451e5c89e4eSSatish Balay 452e5c89e4eSSatish Balay Notes: uses MPI_COMM_WORLD, because this may be called in PetscFinalize() after PETSC_COMM_WORLD 453e5c89e4eSSatish Balay has been freed. 454e5c89e4eSSatish Balay 455e5c89e4eSSatish Balay Concepts: memory usage 456e5c89e4eSSatish Balay Concepts: memory bleeding 457e5c89e4eSSatish Balay Concepts: bleeding memory 458e5c89e4eSSatish Balay 459e5c89e4eSSatish Balay .seealso: PetscMallocGetCurrentSize(), PetscMallocDumpLog() 460e5c89e4eSSatish Balay @*/ 461e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocDump(FILE *fp) 462e5c89e4eSSatish Balay { 463e5c89e4eSSatish Balay TRSPACE *head; 464e5c89e4eSSatish Balay PetscErrorCode ierr; 465e5c89e4eSSatish Balay PetscMPIInt rank; 466e5c89e4eSSatish Balay 467e5c89e4eSSatish Balay PetscFunctionBegin; 468e5c89e4eSSatish Balay ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr); 469*da9f1d6bSBarry Smith if (!fp) fp = PETSC_STDOUT; 470e5c89e4eSSatish Balay if (TRallocated > 0) { 471e5c89e4eSSatish Balay fprintf(fp,"[%d]Total space allocated %.0f bytes\n",rank,(PetscLogDouble)TRallocated); 472e5c89e4eSSatish Balay } 473e5c89e4eSSatish Balay head = TRhead; 474e5c89e4eSSatish Balay while (head) { 475e5c89e4eSSatish Balay fprintf(fp,"[%2d]%.0f bytes %s() line %d in %s%s\n",rank,(PetscLogDouble)head->size,head->functionname,head->lineno,head->dirname,head->filename); 476e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 477e5c89e4eSSatish Balay ierr = PetscStackPrint(&head->stack,fp);CHKERRQ(ierr); 478e5c89e4eSSatish Balay #endif 479e5c89e4eSSatish Balay head = head->next; 480e5c89e4eSSatish Balay } 481e5c89e4eSSatish Balay PetscFunctionReturn(0); 482e5c89e4eSSatish Balay } 483e5c89e4eSSatish Balay 484e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */ 485e5c89e4eSSatish Balay 486e5c89e4eSSatish Balay #undef __FUNCT__ 487e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocSetDumpLog" 488e5c89e4eSSatish Balay /*@C 489e5c89e4eSSatish Balay PetscMallocSetDumpLog - Activates logging of all calls to PetscMalloc(). 490e5c89e4eSSatish Balay 491e5c89e4eSSatish Balay Not Collective 492e5c89e4eSSatish Balay 493e5c89e4eSSatish Balay Options Database Key: 494e5c89e4eSSatish Balay . -malloc_log - Activates PetscMallocDumpLog() 495e5c89e4eSSatish Balay 496e5c89e4eSSatish Balay Level: advanced 497e5c89e4eSSatish Balay 498e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog() 499e5c89e4eSSatish Balay @*/ 500e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocSetDumpLog(void) 501e5c89e4eSSatish Balay { 502e5c89e4eSSatish Balay PetscFunctionBegin; 503e5c89e4eSSatish Balay PetscLogMalloc = 0; 504e5c89e4eSSatish Balay PetscFunctionReturn(0); 505e5c89e4eSSatish Balay } 506e5c89e4eSSatish Balay 507e5c89e4eSSatish Balay #undef __FUNCT__ 508e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDumpLog" 509e5c89e4eSSatish Balay /*@C 510e5c89e4eSSatish Balay PetscMallocDumpLog - Dumps the log of all calls to PetscMalloc(); also calls 511e5c89e4eSSatish Balay PetscMemoryGetCurrentUsage() and PetscMemoryGetMaximumUsage() 512e5c89e4eSSatish Balay 513e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 514e5c89e4eSSatish Balay 515e5c89e4eSSatish Balay Input Parameter: 516e5c89e4eSSatish Balay . fp - file pointer; or PETSC_NULL 517e5c89e4eSSatish Balay 518e5c89e4eSSatish Balay Options Database Key: 519e5c89e4eSSatish Balay . -malloc_log - Activates PetscMallocDumpLog() 520e5c89e4eSSatish Balay 521e5c89e4eSSatish Balay Level: advanced 522e5c89e4eSSatish Balay 523e5c89e4eSSatish Balay Fortran Note: 524e5c89e4eSSatish Balay The calling sequence in Fortran is PetscMallocDumpLog(integer ierr) 525e5c89e4eSSatish Balay The fp defaults to stdout. 526e5c89e4eSSatish Balay 527e5c89e4eSSatish Balay .seealso: PetscMallocGetCurrentUsage(), PetscMallocDump(), PetscMallocSetDumpLog() 528e5c89e4eSSatish Balay @*/ 529e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocDumpLog(FILE *fp) 530e5c89e4eSSatish Balay { 531e5c89e4eSSatish Balay PetscInt i,j,n,dummy,*perm; 532e5c89e4eSSatish Balay size_t *shortlength; 53359ffdab8SBarry Smith int *shortcount; 534e5c89e4eSSatish Balay PetscMPIInt rank,size,tag = 1212 /* very bad programming */; 535e5c89e4eSSatish Balay PetscTruth match; 536e5c89e4eSSatish Balay const char **shortfunction; 537e5c89e4eSSatish Balay PetscLogDouble rss; 538e5c89e4eSSatish Balay MPI_Status status; 539e5c89e4eSSatish Balay PetscErrorCode ierr; 540e5c89e4eSSatish Balay 541e5c89e4eSSatish Balay PetscFunctionBegin; 542e5c89e4eSSatish Balay ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr); 543e5c89e4eSSatish Balay ierr = MPI_Comm_size(MPI_COMM_WORLD,&size);CHKERRQ(ierr); 544e5c89e4eSSatish Balay /* 545e5c89e4eSSatish Balay Try to get the data printed in order by processor. This will only sometimes work 546e5c89e4eSSatish Balay */ 547e5c89e4eSSatish Balay fflush(fp); 548e5c89e4eSSatish Balay ierr = MPI_Barrier(MPI_COMM_WORLD);CHKERRQ(ierr); 549e5c89e4eSSatish Balay if (rank) { 550e5c89e4eSSatish Balay ierr = MPI_Recv(&dummy,1,MPIU_INT,rank-1,tag,MPI_COMM_WORLD,&status);CHKERRQ(ierr); 551e5c89e4eSSatish Balay } 552e5c89e4eSSatish Balay 553*da9f1d6bSBarry Smith if (!fp) fp = PETSC_STDOUT; 554e5c89e4eSSatish Balay ierr = PetscMemoryGetCurrentUsage(&rss);CHKERRQ(ierr); 555e5c89e4eSSatish Balay if (rss) { 556e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f maximum size of entire process %D\n",rank,(PetscLogDouble)TRMaxMem,rss);CHKERRQ(ierr); 557e5c89e4eSSatish Balay } else { 558e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f OS cannot compute size of entire process\n",rank,(PetscLogDouble)TRMaxMem);CHKERRQ(ierr); 559e5c89e4eSSatish Balay } 56069c4ddd3SBarry Smith if (PetscLogMalloc < 0) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"PetscMallocDumpLog() called without call to PetscMallocSetDumpLog() this is often due to\n setting the option -malloc_log AFTER PetscInitialize() with PetscOptionsInsert() or PetscOptionsInsertFile()"); 56159ffdab8SBarry Smith shortcount = (int*)malloc(PetscLogMalloc*sizeof(int));if (!shortcount) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 562e5c89e4eSSatish Balay shortlength = (size_t*)malloc(PetscLogMalloc*sizeof(size_t));if (!shortlength) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 563e5c89e4eSSatish Balay shortfunction = (const char**)malloc(PetscLogMalloc*sizeof(char *));if (!shortfunction) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 564e5c89e4eSSatish Balay shortfunction[0] = PetscLogMallocFunction[0]; 565e5c89e4eSSatish Balay shortlength[0] = PetscLogMallocLength[0]; 56659ffdab8SBarry Smith shortcount[0] = 0; 567e5c89e4eSSatish Balay n = 1; 568e5c89e4eSSatish Balay for (i=1; i<PetscLogMalloc; i++) { 569e5c89e4eSSatish Balay for (j=0; j<n; j++) { 570e5c89e4eSSatish Balay ierr = PetscStrcmp(shortfunction[j],PetscLogMallocFunction[i],&match);CHKERRQ(ierr); 571e5c89e4eSSatish Balay if (match) { 572e5c89e4eSSatish Balay shortlength[j] += PetscLogMallocLength[i]; 57359ffdab8SBarry Smith shortcount[j]++; 574e5c89e4eSSatish Balay goto foundit; 575e5c89e4eSSatish Balay } 576e5c89e4eSSatish Balay } 577e5c89e4eSSatish Balay shortfunction[n] = PetscLogMallocFunction[i]; 578e5c89e4eSSatish Balay shortlength[n] = PetscLogMallocLength[i]; 57959ffdab8SBarry Smith shortcount[n] = 1; 580e5c89e4eSSatish Balay n++; 581e5c89e4eSSatish Balay foundit:; 582e5c89e4eSSatish Balay } 583e5c89e4eSSatish Balay 584e5c89e4eSSatish Balay perm = (PetscInt*)malloc(n*sizeof(PetscInt));if (!perm) SETERRQ(PETSC_ERR_MEM,"Out of memory"); 585e5c89e4eSSatish Balay for (i=0; i<n; i++) perm[i] = i; 586e5c89e4eSSatish Balay ierr = PetscSortStrWithPermutation(n,(const char **)shortfunction,perm);CHKERRQ(ierr); 587e5c89e4eSSatish Balay 588e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Memory usage sorted by function\n",rank);CHKERRQ(ierr); 589e5c89e4eSSatish Balay for (i=0; i<n; i++) { 59059ffdab8SBarry Smith ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] %d %.0f %s()\n",rank,shortcount[perm[i]],(PetscLogDouble)shortlength[perm[i]],shortfunction[perm[i]]);CHKERRQ(ierr); 591e5c89e4eSSatish Balay } 592e5c89e4eSSatish Balay free(perm); 593e5c89e4eSSatish Balay free(shortlength); 59459ffdab8SBarry Smith free(shortcount); 595e5c89e4eSSatish Balay free((char **)shortfunction); 596e5c89e4eSSatish Balay fflush(fp); 597e5c89e4eSSatish Balay if (rank != size-1) { 598e5c89e4eSSatish Balay ierr = MPI_Send(&dummy,1,MPIU_INT,rank+1,tag,MPI_COMM_WORLD);CHKERRQ(ierr); 599e5c89e4eSSatish Balay } 600e5c89e4eSSatish Balay PetscFunctionReturn(0); 601e5c89e4eSSatish Balay } 602e5c89e4eSSatish Balay 603e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */ 604e5c89e4eSSatish Balay 605e5c89e4eSSatish Balay #undef __FUNCT__ 606e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDebug" 607e5c89e4eSSatish Balay /*@C 608e5c89e4eSSatish Balay PetscMallocDebug - Turns on/off debugging for the memory management routines. 609e5c89e4eSSatish Balay 610e5c89e4eSSatish Balay Not Collective 611e5c89e4eSSatish Balay 612e5c89e4eSSatish Balay Input Parameter: 613e5c89e4eSSatish Balay . level - PETSC_TRUE or PETSC_FALSE 614e5c89e4eSSatish Balay 615e5c89e4eSSatish Balay Level: intermediate 616e5c89e4eSSatish Balay 617e5c89e4eSSatish Balay .seealso: CHKMEMQ(), PetscMallocValidate() 618e5c89e4eSSatish Balay @*/ 619e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscMallocDebug(PetscTruth level) 620e5c89e4eSSatish Balay { 621e5c89e4eSSatish Balay PetscFunctionBegin; 622e5c89e4eSSatish Balay TRdebugLevel = level; 623e5c89e4eSSatish Balay PetscFunctionReturn(0); 624e5c89e4eSSatish Balay } 625