17d0a6c19SBarry Smith 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay Interface to malloc() and free(). This code allows for 4e5c89e4eSSatish Balay logging of memory usage and some error checking 5e5c89e4eSSatish Balay */ 6c6db04a5SJed Brown #include <petscsys.h> /*I "petscsys.h" I*/ 7665c2dedSJed Brown #include <petscviewer.h> 8e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MALLOC_H) 9e5c89e4eSSatish Balay #include <malloc.h> 10e5c89e4eSSatish Balay #endif 11e5c89e4eSSatish Balay 12e5c89e4eSSatish Balay 13e5c89e4eSSatish Balay /* 14e5c89e4eSSatish Balay These are defined in mal.c and ensure that malloced space is PetscScalar aligned 15e5c89e4eSSatish Balay */ 16*efca3c55SSatish Balay extern PetscErrorCode PetscMallocAlign(size_t,int,const char[],const char[],void**); 17*efca3c55SSatish Balay extern PetscErrorCode PetscFreeAlign(void*,int,const char[],const char[]); 18*efca3c55SSatish Balay extern PetscErrorCode PetscTrMallocDefault(size_t,int,const char[],const char[],void**); 19*efca3c55SSatish Balay extern PetscErrorCode PetscTrFreeDefault(void*,int,const char[],const char[]); 20e5c89e4eSSatish Balay 21e5c89e4eSSatish Balay 220700a824SBarry Smith #define CLASSID_VALUE ((PetscClassId) 0xf0e0d0c9) 230700a824SBarry Smith #define ALREADY_FREED ((PetscClassId) 0x0f0e0d9c) 24e5c89e4eSSatish Balay 25e5c89e4eSSatish Balay typedef struct _trSPACE { 26e5c89e4eSSatish Balay size_t size; 27e5c89e4eSSatish Balay int id; 28e5c89e4eSSatish Balay int lineno; 29e5c89e4eSSatish Balay const char *filename; 30e5c89e4eSSatish Balay const char *functionname; 310700a824SBarry Smith PetscClassId classid; 328bf1f09cSShri Abhyankar #if defined(PETSC_USE_DEBUG) 33e5c89e4eSSatish Balay PetscStack stack; 34e5c89e4eSSatish Balay #endif 35e5c89e4eSSatish Balay struct _trSPACE *next,*prev; 36e5c89e4eSSatish Balay } TRSPACE; 37e5c89e4eSSatish Balay 3825b53cc9SJed Brown /* HEADER_BYTES is the number of bytes in a PetscMalloc() header. 3925b53cc9SJed Brown It is sizeof(TRSPACE) padded to be a multiple of PETSC_MEMALIGN. 4025b53cc9SJed Brown */ 41e5c89e4eSSatish Balay 42a64a8e02SBarry Smith #define HEADER_BYTES ((sizeof(TRSPACE)+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 43e5c89e4eSSatish Balay 44e5c89e4eSSatish Balay 4525b53cc9SJed Brown /* This union is used to insure that the block passed to the user retains 4625b53cc9SJed Brown a minimum alignment of PETSC_MEMALIGN. 4725b53cc9SJed Brown */ 48e5c89e4eSSatish Balay typedef union { 49e5c89e4eSSatish Balay TRSPACE sp; 5025b53cc9SJed Brown char v[HEADER_BYTES]; 51e5c89e4eSSatish Balay } TrSPACE; 52e5c89e4eSSatish Balay 53b022a5c1SBarry Smith 54e5c89e4eSSatish Balay static size_t TRallocated = 0; 55e5c89e4eSSatish Balay static int TRfrags = 0; 56e5c89e4eSSatish Balay static TRSPACE *TRhead = 0; 57e5c89e4eSSatish Balay static int TRid = 0; 58ace3abfcSBarry Smith static PetscBool TRdebugLevel = PETSC_FALSE; 59e5c89e4eSSatish Balay static size_t TRMaxMem = 0; 60e5c89e4eSSatish Balay /* 61e5c89e4eSSatish Balay Arrays to log information on all Mallocs 62e5c89e4eSSatish Balay */ 63e5c89e4eSSatish Balay static int PetscLogMallocMax = 10000,PetscLogMalloc = -1; 64574034a9SJed Brown static size_t PetscLogMallocThreshold = 0; 65e5c89e4eSSatish Balay static size_t *PetscLogMallocLength; 66*efca3c55SSatish Balay static const char **PetscLogMallocFile,**PetscLogMallocFunction; 67e5c89e4eSSatish Balay 68e5c89e4eSSatish Balay #undef __FUNCT__ 69b022a5c1SBarry Smith #define __FUNCT__ "PetscSetUseTrMalloc_Private" 70b022a5c1SBarry Smith PetscErrorCode PetscSetUseTrMalloc_Private(void) 71b022a5c1SBarry Smith { 72b022a5c1SBarry Smith PetscErrorCode ierr; 73b022a5c1SBarry Smith 74b022a5c1SBarry Smith PetscFunctionBegin; 75b022a5c1SBarry Smith ierr = PetscMallocSet(PetscTrMallocDefault,PetscTrFreeDefault);CHKERRQ(ierr); 76a297a907SKarl Rupp 77b022a5c1SBarry Smith TRallocated = 0; 78b022a5c1SBarry Smith TRfrags = 0; 79b022a5c1SBarry Smith TRhead = 0; 80b022a5c1SBarry Smith TRid = 0; 81b022a5c1SBarry Smith TRdebugLevel = PETSC_FALSE; 82b022a5c1SBarry Smith TRMaxMem = 0; 83b022a5c1SBarry Smith PetscLogMallocMax = 10000; 84b022a5c1SBarry Smith PetscLogMalloc = -1; 85b022a5c1SBarry Smith PetscFunctionReturn(0); 86b022a5c1SBarry Smith } 87b022a5c1SBarry Smith 88b022a5c1SBarry Smith #undef __FUNCT__ 89e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocValidate" 90e5c89e4eSSatish Balay /*@C 91e5c89e4eSSatish Balay PetscMallocValidate - Test the memory for corruption. This can be used to 92e5c89e4eSSatish Balay check for memory overwrites. 93e5c89e4eSSatish Balay 94e5c89e4eSSatish Balay Input Parameter: 95e5c89e4eSSatish Balay + line - line number where call originated. 96e5c89e4eSSatish Balay . function - name of function calling 97*efca3c55SSatish Balay - file - file where function is 98e5c89e4eSSatish Balay 99e5c89e4eSSatish Balay Return value: 100e5c89e4eSSatish Balay The number of errors detected. 101e5c89e4eSSatish Balay 102e5c89e4eSSatish Balay Output Effect: 103e5c89e4eSSatish Balay Error messages are written to stdout. 104e5c89e4eSSatish Balay 105e5c89e4eSSatish Balay Level: advanced 106e5c89e4eSSatish Balay 107e5c89e4eSSatish Balay Notes: 108e5c89e4eSSatish Balay You should generally use CHKMEMQ as a short cut for calling this 109e5c89e4eSSatish Balay routine. 110e5c89e4eSSatish Balay 111*efca3c55SSatish Balay The line, function, file are given by the C preprocessor as 112*efca3c55SSatish Balay __LINE__, __FUNCT__, __FILE__ 113e5c89e4eSSatish Balay 114e5c89e4eSSatish Balay The Fortran calling sequence is simply PetscMallocValidate(ierr) 115e5c89e4eSSatish Balay 116e5c89e4eSSatish Balay No output is generated if there are no problems detected. 117e5c89e4eSSatish Balay 118e5c89e4eSSatish Balay .seealso: CHKMEMQ 119e5c89e4eSSatish Balay 120e5c89e4eSSatish Balay @*/ 121*efca3c55SSatish Balay PetscErrorCode PetscMallocValidate(int line,const char function[],const char file[]) 122e5c89e4eSSatish Balay { 1236c093d5bSvictor TRSPACE *head,*lasthead; 124e5c89e4eSSatish Balay char *a; 1250700a824SBarry Smith PetscClassId *nend; 126e5c89e4eSSatish Balay 127e5c89e4eSSatish Balay PetscFunctionBegin; 1286c093d5bSvictor head = TRhead; lasthead = NULL; 129e5c89e4eSSatish Balay while (head) { 1300700a824SBarry Smith if (head->classid != CLASSID_VALUE) { 131*efca3c55SSatish Balay (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s\n",function,line,file); 132e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory at address %p is corrupted\n",head); 133e5c89e4eSSatish Balay (*PetscErrorPrintf)("Probably write past beginning or end of array\n"); 134*efca3c55SSatish Balay if (lasthead) (*PetscErrorPrintf)("Last intact block allocated in %s() line %d in %s\n",lasthead->functionname,lasthead->lineno,lasthead->filename); 135e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC," "); 136e5c89e4eSSatish Balay } 137e5c89e4eSSatish Balay a = (char*)(((TrSPACE*)head) + 1); 1380700a824SBarry Smith nend = (PetscClassId*)(a + head->size); 1390700a824SBarry Smith if (*nend != CLASSID_VALUE) { 140*efca3c55SSatish Balay (*PetscErrorPrintf)("PetscMallocValidate: error detected at %s() line %d in %s\n",function,line,file); 141e5c89e4eSSatish Balay if (*nend == ALREADY_FREED) { 142e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p already freed\n",head->id,(PetscLogDouble)head->size,a); 143e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC," "); 144e5c89e4eSSatish Balay } else { 145e5c89e4eSSatish Balay (*PetscErrorPrintf)("Memory [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a); 146*efca3c55SSatish Balay (*PetscErrorPrintf)("Memory originally allocated in %s() line %d in %s\n",head->functionname,head->lineno,head->filename); 147e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC," "); 148e5c89e4eSSatish Balay } 149e5c89e4eSSatish Balay } 1506c093d5bSvictor lasthead = head; 151e5c89e4eSSatish Balay head = head->next; 152e5c89e4eSSatish Balay } 153e5c89e4eSSatish Balay PetscFunctionReturn(0); 154e5c89e4eSSatish Balay } 155e5c89e4eSSatish Balay 156e5c89e4eSSatish Balay #undef __FUNCT__ 157e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrMallocDefault" 158e5c89e4eSSatish Balay /* 159e5c89e4eSSatish Balay PetscTrMallocDefault - Malloc with tracing. 160e5c89e4eSSatish Balay 161e5c89e4eSSatish Balay Input Parameters: 162e5c89e4eSSatish Balay + a - number of bytes to allocate 163e5c89e4eSSatish Balay . lineno - line number where used. Use __LINE__ for this 164e5c89e4eSSatish Balay . function - function calling routine. Use __FUNCT__ for this 165*efca3c55SSatish Balay - filename - file name where used. Use __FILE__ for this 166e5c89e4eSSatish Balay 167e5c89e4eSSatish Balay Returns: 168e5c89e4eSSatish Balay double aligned pointer to requested storage, or null if not 169e5c89e4eSSatish Balay available. 170e5c89e4eSSatish Balay */ 171*efca3c55SSatish Balay PetscErrorCode PetscTrMallocDefault(size_t a,int lineno,const char function[],const char filename[],void **result) 172e5c89e4eSSatish Balay { 173e5c89e4eSSatish Balay TRSPACE *head; 174e5c89e4eSSatish Balay char *inew; 175e5c89e4eSSatish Balay size_t nsize; 176e5c89e4eSSatish Balay PetscErrorCode ierr; 177e5c89e4eSSatish Balay 178e5c89e4eSSatish Balay PetscFunctionBegin; 17917186662SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to malloc zero size array"); 1802a6744ebSBarry Smith 181e5c89e4eSSatish Balay if (TRdebugLevel) { 182*efca3c55SSatish Balay ierr = PetscMallocValidate(lineno,function,filename); if (ierr) PetscFunctionReturn(ierr); 183e5c89e4eSSatish Balay } 184e5c89e4eSSatish Balay 18525b53cc9SJed Brown nsize = (a + (PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1); 186*efca3c55SSatish Balay ierr = PetscMallocAlign(nsize+sizeof(TrSPACE)+sizeof(PetscClassId),lineno,function,filename,(void**)&inew);CHKERRQ(ierr); 187e5c89e4eSSatish Balay 188e5c89e4eSSatish Balay head = (TRSPACE*)inew; 189e5c89e4eSSatish Balay inew += sizeof(TrSPACE); 190e5c89e4eSSatish Balay 191e5c89e4eSSatish Balay if (TRhead) TRhead->prev = head; 192e5c89e4eSSatish Balay head->next = TRhead; 193e5c89e4eSSatish Balay TRhead = head; 194e5c89e4eSSatish Balay head->prev = 0; 195e5c89e4eSSatish Balay head->size = nsize; 196e5c89e4eSSatish Balay head->id = TRid; 197e5c89e4eSSatish Balay head->lineno = lineno; 198e5c89e4eSSatish Balay 199e5c89e4eSSatish Balay head->filename = filename; 200e5c89e4eSSatish Balay head->functionname = function; 2010700a824SBarry Smith head->classid = CLASSID_VALUE; 2020700a824SBarry Smith *(PetscClassId*)(inew + nsize) = CLASSID_VALUE; 203e5c89e4eSSatish Balay 204e5c89e4eSSatish Balay TRallocated += nsize; 205a297a907SKarl Rupp if (TRallocated > TRMaxMem) TRMaxMem = TRallocated; 206e5c89e4eSSatish Balay TRfrags++; 207e5c89e4eSSatish Balay 2088bf1f09cSShri Abhyankar #if defined(PETSC_USE_DEBUG) 20976386721SLisandro Dalcin if (PetscStackActive()) { 2101f46d60fSShri Abhyankar ierr = PetscStackCopy((PetscStack*)PetscThreadLocalGetValue(petscstack),&head->stack);CHKERRQ(ierr); 2112c9581d2SBarry Smith /* fix the line number to where the malloc() was called, not the PetscFunctionBegin; */ 2122c9581d2SBarry Smith head->stack.line[head->stack.currentsize-2] = lineno; 21376386721SLisandro Dalcin } 214e5c89e4eSSatish Balay #endif 215e5c89e4eSSatish Balay 216e5c89e4eSSatish Balay /* 217e5c89e4eSSatish Balay Allow logging of all mallocs made 218e5c89e4eSSatish Balay */ 219574034a9SJed Brown if (PetscLogMalloc > -1 && PetscLogMalloc < PetscLogMallocMax && a >= PetscLogMallocThreshold) { 220e5c89e4eSSatish Balay if (!PetscLogMalloc) { 221e5c89e4eSSatish Balay PetscLogMallocLength = (size_t*)malloc(PetscLogMallocMax*sizeof(size_t)); 222e32f2f54SBarry Smith if (!PetscLogMallocLength) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM," "); 223a297a907SKarl Rupp 224a2ea699eSBarry Smith PetscLogMallocFile = (const char**)malloc(PetscLogMallocMax*sizeof(char*)); 225e32f2f54SBarry Smith if (!PetscLogMallocFile) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM," "); 226a297a907SKarl Rupp 227a2ea699eSBarry Smith PetscLogMallocFunction = (const char**)malloc(PetscLogMallocMax*sizeof(char*)); 228e32f2f54SBarry Smith if (!PetscLogMallocFunction) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM," "); 229e5c89e4eSSatish Balay } 230e5c89e4eSSatish Balay PetscLogMallocLength[PetscLogMalloc] = nsize; 231e5c89e4eSSatish Balay PetscLogMallocFile[PetscLogMalloc] = filename; 232e5c89e4eSSatish Balay PetscLogMallocFunction[PetscLogMalloc++] = function; 233e5c89e4eSSatish Balay } 234e5c89e4eSSatish Balay *result = (void*)inew; 235e5c89e4eSSatish Balay PetscFunctionReturn(0); 236e5c89e4eSSatish Balay } 237e5c89e4eSSatish Balay 238e5c89e4eSSatish Balay 239e5c89e4eSSatish Balay #undef __FUNCT__ 240e5c89e4eSSatish Balay #define __FUNCT__ "PetscTrFreeDefault" 241e5c89e4eSSatish Balay /* 242e5c89e4eSSatish Balay PetscTrFreeDefault - Free with tracing. 243e5c89e4eSSatish Balay 244e5c89e4eSSatish Balay Input Parameters: 245e5c89e4eSSatish Balay . a - pointer to a block allocated with PetscTrMalloc 246e5c89e4eSSatish Balay . lineno - line number where used. Use __LINE__ for this 247e5c89e4eSSatish Balay . function - function calling routine. Use __FUNCT__ for this 248e5c89e4eSSatish Balay . file - file name where used. Use __FILE__ for this 249e5c89e4eSSatish Balay */ 250*efca3c55SSatish Balay PetscErrorCode PetscTrFreeDefault(void *aa,int line,const char function[],const char file[]) 251e5c89e4eSSatish Balay { 252e5c89e4eSSatish Balay char *a = (char*)aa; 253e5c89e4eSSatish Balay TRSPACE *head; 254e5c89e4eSSatish Balay char *ahead; 255e5c89e4eSSatish Balay PetscErrorCode ierr; 2560700a824SBarry Smith PetscClassId *nend; 257e5c89e4eSSatish Balay 258e5c89e4eSSatish Balay PetscFunctionBegin; 259e5c89e4eSSatish Balay /* Do not try to handle empty blocks */ 260e5c89e4eSSatish Balay if (!a) { 261*efca3c55SSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault called from %s() line %d in %s\n",function,line,file); 262*efca3c55SSatish Balay SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to free null block: Free called from %s() line %d in %s\n",function,line,file); 263e5c89e4eSSatish Balay } 264e5c89e4eSSatish Balay 265e5c89e4eSSatish Balay if (TRdebugLevel) { 266*efca3c55SSatish Balay ierr = PetscMallocValidate(line,function,file);CHKERRQ(ierr); 267e5c89e4eSSatish Balay } 268e5c89e4eSSatish Balay 269e5c89e4eSSatish Balay ahead = a; 270e5c89e4eSSatish Balay a = a - sizeof(TrSPACE); 271e5c89e4eSSatish Balay head = (TRSPACE*)a; 272e5c89e4eSSatish Balay 2730700a824SBarry Smith if (head->classid != CLASSID_VALUE) { 274*efca3c55SSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s\n",function,line,file); 275e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block at address %p is corrupted; cannot free;\nmay be block not allocated with PetscMalloc()\n",a); 276e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC,"Bad location or corrupted memory"); 277e5c89e4eSSatish Balay } 2780700a824SBarry Smith nend = (PetscClassId*)(ahead + head->size); 2790700a824SBarry Smith if (*nend != CLASSID_VALUE) { 280e5c89e4eSSatish Balay if (*nend == ALREADY_FREED) { 281*efca3c55SSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s\n",function,line,file); 282e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p was already freed\n",head->id,(PetscLogDouble)head->size,a + sizeof(TrSPACE)); 283e5c89e4eSSatish Balay if (head->lineno > 0 && head->lineno < 50000 /* sanity check */) { 284*efca3c55SSatish Balay (*PetscErrorPrintf)("Block freed in %s() line %d in %s\n",head->functionname,head->lineno,head->filename); 285e5c89e4eSSatish Balay } else { 286*efca3c55SSatish Balay (*PetscErrorPrintf)("Block allocated in %s() line %d in %s\n",head->functionname,-head->lineno,head->filename); 287e5c89e4eSSatish Balay } 288e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Memory already freed"); 289e5c89e4eSSatish Balay } else { 290e5c89e4eSSatish Balay /* Damaged tail */ 291*efca3c55SSatish Balay (*PetscErrorPrintf)("PetscTrFreeDefault() called from %s() line %d in %s\n",function,line,file); 292e5c89e4eSSatish Balay (*PetscErrorPrintf)("Block [id=%d(%.0f)] at address %p is corrupted (probably write past end of array)\n",head->id,(PetscLogDouble)head->size,a); 293*efca3c55SSatish Balay (*PetscErrorPrintf)("Block allocated in %s() line %d in %s\n",head->functionname,head->lineno,head->filename); 294e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEMC,"Corrupted memory"); 295e5c89e4eSSatish Balay } 296e5c89e4eSSatish Balay } 297e5c89e4eSSatish Balay /* Mark the location freed */ 298e5c89e4eSSatish Balay *nend = ALREADY_FREED; 299e5c89e4eSSatish Balay /* Save location where freed. If we suspect the line number, mark as allocated location */ 300e5c89e4eSSatish Balay if (line > 0 && line < 50000) { 301e5c89e4eSSatish Balay head->lineno = line; 302e5c89e4eSSatish Balay head->filename = file; 303e5c89e4eSSatish Balay head->functionname = function; 304e5c89e4eSSatish Balay } else { 305e5c89e4eSSatish Balay head->lineno = -head->lineno; 306e5c89e4eSSatish Balay } 307e5c89e4eSSatish Balay /* zero out memory - helps to find some reuse of already freed memory */ 308e5c89e4eSSatish Balay ierr = PetscMemzero(aa,head->size);CHKERRQ(ierr); 309e5c89e4eSSatish Balay 310e5c89e4eSSatish Balay TRallocated -= head->size; 311e5c89e4eSSatish Balay TRfrags--; 312e5c89e4eSSatish Balay if (head->prev) head->prev->next = head->next; 313e5c89e4eSSatish Balay else TRhead = head->next; 314e5c89e4eSSatish Balay 315e5c89e4eSSatish Balay if (head->next) head->next->prev = head->prev; 316*efca3c55SSatish Balay ierr = PetscFreeAlign(a,line,function,file);CHKERRQ(ierr); 317e5c89e4eSSatish Balay PetscFunctionReturn(0); 318e5c89e4eSSatish Balay } 319e5c89e4eSSatish Balay 320e5c89e4eSSatish Balay 321e5c89e4eSSatish Balay #undef __FUNCT__ 322e5c89e4eSSatish Balay #define __FUNCT__ "PetscMemoryShowUsage" 323fe7fb379SMatthew Knepley /*@C 324e5c89e4eSSatish Balay PetscMemoryShowUsage - Shows the amount of memory currently being used 325e5c89e4eSSatish Balay in a communicator. 326e5c89e4eSSatish Balay 327e5c89e4eSSatish Balay Collective on PetscViewer 328e5c89e4eSSatish Balay 329e5c89e4eSSatish Balay Input Parameter: 330e5c89e4eSSatish Balay + viewer - the viewer that defines the communicator 331e5c89e4eSSatish Balay - message - string printed before values 332e5c89e4eSSatish Balay 333e5c89e4eSSatish Balay Level: intermediate 334e5c89e4eSSatish Balay 335e5c89e4eSSatish Balay Concepts: memory usage 336e5c89e4eSSatish Balay 3371bb97394SVictor Eijkhout .seealso: PetscMallocDump(), PetscMemoryGetCurrentUsage() 338e5c89e4eSSatish Balay @*/ 3397087cfbeSBarry Smith PetscErrorCode PetscMemoryShowUsage(PetscViewer viewer,const char message[]) 340e5c89e4eSSatish Balay { 341e5c89e4eSSatish Balay PetscLogDouble allocated,maximum,resident,residentmax; 342e5c89e4eSSatish Balay PetscErrorCode ierr; 343e5c89e4eSSatish Balay PetscMPIInt rank; 344e5c89e4eSSatish Balay MPI_Comm comm; 345e5c89e4eSSatish Balay 346e5c89e4eSSatish Balay PetscFunctionBegin; 347e5c89e4eSSatish Balay if (!viewer) viewer = PETSC_VIEWER_STDOUT_WORLD; 348e5c89e4eSSatish Balay ierr = PetscMallocGetCurrentUsage(&allocated);CHKERRQ(ierr); 349e5c89e4eSSatish Balay ierr = PetscMallocGetMaximumUsage(&maximum);CHKERRQ(ierr); 350e5c89e4eSSatish Balay ierr = PetscMemoryGetCurrentUsage(&resident);CHKERRQ(ierr); 351e5c89e4eSSatish Balay ierr = PetscMemoryGetMaximumUsage(&residentmax);CHKERRQ(ierr); 352e5c89e4eSSatish Balay if (residentmax > 0) residentmax = PetscMax(resident,residentmax); 353e5c89e4eSSatish Balay ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 354e5c89e4eSSatish Balay ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 355e5c89e4eSSatish Balay ierr = PetscViewerASCIIPrintf(viewer,message);CHKERRQ(ierr); 3567b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 357e5c89e4eSSatish Balay if (resident && residentmax && allocated) { 358e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g max process memory %g\n",rank,allocated,maximum,rank,resident,residentmax);CHKERRQ(ierr); 359e5c89e4eSSatish Balay } else if (resident && residentmax) { 360e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Run with -malloc to get statistics on PetscMalloc() calls\n[%d]Current process memory %g max process memory %g\n",rank,rank,resident,residentmax);CHKERRQ(ierr); 361e5c89e4eSSatish Balay } else if (resident && allocated) { 362e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]Current process memory %g, run with -memory_info to get max memory usage\n",rank,allocated,maximum,rank,resident);CHKERRQ(ierr); 363e5c89e4eSSatish Balay } else if (allocated) { 364e5c89e4eSSatish Balay ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]Current space PetscMalloc()ed %g, max space PetscMalloced() %g\n[%d]OS cannot compute process memory\n",rank,allocated,maximum,rank);CHKERRQ(ierr); 365e5c89e4eSSatish Balay } else { 366e5c89e4eSSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"Run with -malloc to get statistics on PetscMalloc() calls\nOS cannot compute process memory\n");CHKERRQ(ierr); 367e5c89e4eSSatish Balay } 368e5c89e4eSSatish Balay ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 3697b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 370e5c89e4eSSatish Balay PetscFunctionReturn(0); 371e5c89e4eSSatish Balay } 372e5c89e4eSSatish Balay 373e5c89e4eSSatish Balay #undef __FUNCT__ 374e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetCurrentUsage" 375e5c89e4eSSatish Balay /*@C 376e5c89e4eSSatish Balay PetscMallocGetCurrentUsage - gets the current amount of memory used that was PetscMalloc()ed 377e5c89e4eSSatish Balay 378e5c89e4eSSatish Balay Not Collective 379e5c89e4eSSatish Balay 380e5c89e4eSSatish Balay Output Parameters: 381e5c89e4eSSatish Balay . space - number of bytes currently allocated 382e5c89e4eSSatish Balay 383e5c89e4eSSatish Balay Level: intermediate 384e5c89e4eSSatish Balay 385e5c89e4eSSatish Balay Concepts: memory usage 386e5c89e4eSSatish Balay 387e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(), 388e5c89e4eSSatish Balay PetscMemoryGetMaximumUsage() 389e5c89e4eSSatish Balay @*/ 3907087cfbeSBarry Smith PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *space) 391e5c89e4eSSatish Balay { 392e5c89e4eSSatish Balay PetscFunctionBegin; 393e5c89e4eSSatish Balay *space = (PetscLogDouble) TRallocated; 394e5c89e4eSSatish Balay PetscFunctionReturn(0); 395e5c89e4eSSatish Balay } 396e5c89e4eSSatish Balay 397e5c89e4eSSatish Balay #undef __FUNCT__ 398e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocGetMaximumUsage" 399e5c89e4eSSatish Balay /*@C 400e5c89e4eSSatish Balay PetscMallocGetMaximumUsage - gets the maximum amount of memory used that was PetscMalloc()ed at any time 401e5c89e4eSSatish Balay during this run. 402e5c89e4eSSatish Balay 403e5c89e4eSSatish Balay Not Collective 404e5c89e4eSSatish Balay 405e5c89e4eSSatish Balay Output Parameters: 406e5c89e4eSSatish Balay . space - maximum number of bytes ever allocated at one time 407e5c89e4eSSatish Balay 408e5c89e4eSSatish Balay Level: intermediate 409e5c89e4eSSatish Balay 410e5c89e4eSSatish Balay Concepts: memory usage 411e5c89e4eSSatish Balay 412e5c89e4eSSatish Balay .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocGetMaximumUsage(), PetscMemoryGetCurrentUsage(), 413e5c89e4eSSatish Balay PetscMemoryGetCurrentUsage() 414e5c89e4eSSatish Balay @*/ 4157087cfbeSBarry Smith PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *space) 416e5c89e4eSSatish Balay { 417e5c89e4eSSatish Balay PetscFunctionBegin; 418e5c89e4eSSatish Balay *space = (PetscLogDouble) TRMaxMem; 419e5c89e4eSSatish Balay PetscFunctionReturn(0); 420e5c89e4eSSatish Balay } 421e5c89e4eSSatish Balay 422a64a8e02SBarry Smith #if defined(PETSC_USE_DEBUG) 423a64a8e02SBarry Smith #undef __FUNCT__ 424a64a8e02SBarry Smith #define __FUNCT__ "PetscMallocGetStack" 425a64a8e02SBarry Smith /*@C 426a64a8e02SBarry Smith PetscMallocGetStack - returns a pointer to the stack for the location in the program a call to PetscMalloc() was used to obtain that memory 427a64a8e02SBarry Smith 428a64a8e02SBarry Smith Collective on PETSC_COMM_WORLD 429a64a8e02SBarry Smith 430a64a8e02SBarry Smith Input Parameter: 431a64a8e02SBarry Smith . ptr - the memory location 432a64a8e02SBarry Smith 433a64a8e02SBarry Smith Output Paramter: 434a64a8e02SBarry Smith . stack - the stack indicating where the program allocated this memory 435a64a8e02SBarry Smith 436a64a8e02SBarry Smith Level: intermediate 437a64a8e02SBarry Smith 438a64a8e02SBarry Smith .seealso: PetscMallocGetCurrentUsage(), PetscMallocDumpLog() 439a64a8e02SBarry Smith @*/ 440a64a8e02SBarry Smith PetscErrorCode PetscMallocGetStack(void *ptr,PetscStack **stack) 441a64a8e02SBarry Smith { 442a64a8e02SBarry Smith TRSPACE *head; 443a64a8e02SBarry Smith 444a64a8e02SBarry Smith PetscFunctionBegin; 445a64a8e02SBarry Smith head = (TRSPACE*) (((char*)ptr) - HEADER_BYTES); 446a64a8e02SBarry Smith *stack = &head->stack; 447a64a8e02SBarry Smith PetscFunctionReturn(0); 448a64a8e02SBarry Smith } 44976386721SLisandro Dalcin #else 45076386721SLisandro Dalcin #undef __FUNCT__ 45176386721SLisandro Dalcin #define __FUNCT__ "PetscMallocGetStack" 45276386721SLisandro Dalcin PetscErrorCode PetscMallocGetStack(void *ptr,void **stack) 45376386721SLisandro Dalcin { 45476386721SLisandro Dalcin PetscFunctionBegin; 45576386721SLisandro Dalcin *stack = 0; 45676386721SLisandro Dalcin PetscFunctionReturn(0); 45776386721SLisandro Dalcin } 458a64a8e02SBarry Smith #endif 459a64a8e02SBarry Smith 460e5c89e4eSSatish Balay #undef __FUNCT__ 461e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDump" 462e5c89e4eSSatish Balay /*@C 463e5c89e4eSSatish Balay PetscMallocDump - Dumps the allocated memory blocks to a file. The information 464e5c89e4eSSatish Balay printed is: size of space (in bytes), address of space, id of space, 465e5c89e4eSSatish Balay file in which space was allocated, and line number at which it was 466e5c89e4eSSatish Balay allocated. 467e5c89e4eSSatish Balay 468e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 469e5c89e4eSSatish Balay 470e5c89e4eSSatish Balay Input Parameter: 471e5c89e4eSSatish Balay . fp - file pointer. If fp is NULL, stdout is assumed. 472e5c89e4eSSatish Balay 473e5c89e4eSSatish Balay Options Database Key: 474e5c89e4eSSatish Balay . -malloc_dump - Dumps unfreed memory during call to PetscFinalize() 475e5c89e4eSSatish Balay 476e5c89e4eSSatish Balay Level: intermediate 477e5c89e4eSSatish Balay 478e5c89e4eSSatish Balay Fortran Note: 479e5c89e4eSSatish Balay The calling sequence in Fortran is PetscMallocDump(integer ierr) 480e5c89e4eSSatish Balay The fp defaults to stdout. 481e5c89e4eSSatish Balay 482e5c89e4eSSatish Balay Notes: uses MPI_COMM_WORLD, because this may be called in PetscFinalize() after PETSC_COMM_WORLD 483e5c89e4eSSatish Balay has been freed. 484e5c89e4eSSatish Balay 485e5c89e4eSSatish Balay Concepts: memory usage 486e5c89e4eSSatish Balay Concepts: memory bleeding 487e5c89e4eSSatish Balay Concepts: bleeding memory 488e5c89e4eSSatish Balay 4899e9a1f8fSvictor .seealso: PetscMallocGetCurrentUsage(), PetscMallocDumpLog() 490e5c89e4eSSatish Balay @*/ 4917087cfbeSBarry Smith PetscErrorCode PetscMallocDump(FILE *fp) 492e5c89e4eSSatish Balay { 493e5c89e4eSSatish Balay TRSPACE *head; 494e5c89e4eSSatish Balay PetscErrorCode ierr; 495e5c89e4eSSatish Balay PetscMPIInt rank; 496e5c89e4eSSatish Balay 497e5c89e4eSSatish Balay PetscFunctionBegin; 498e5c89e4eSSatish Balay ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr); 499da9f1d6bSBarry Smith if (!fp) fp = PETSC_STDOUT; 500a297a907SKarl Rupp if (TRallocated > 0) fprintf(fp,"[%d]Total space allocated %.0f bytes\n",rank,(PetscLogDouble)TRallocated); 501e5c89e4eSSatish Balay head = TRhead; 502e5c89e4eSSatish Balay while (head) { 503*efca3c55SSatish Balay fprintf(fp,"[%2d]%.0f bytes %s() line %d in %s\n",rank,(PetscLogDouble)head->size,head->functionname,head->lineno,head->filename); 5048bf1f09cSShri Abhyankar #if defined(PETSC_USE_DEBUG) 505e5c89e4eSSatish Balay ierr = PetscStackPrint(&head->stack,fp);CHKERRQ(ierr); 506e5c89e4eSSatish Balay #endif 507e5c89e4eSSatish Balay head = head->next; 508e5c89e4eSSatish Balay } 509e5c89e4eSSatish Balay PetscFunctionReturn(0); 510e5c89e4eSSatish Balay } 511e5c89e4eSSatish Balay 512e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */ 513e5c89e4eSSatish Balay 514e5c89e4eSSatish Balay #undef __FUNCT__ 515e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocSetDumpLog" 516e5c89e4eSSatish Balay /*@C 517e5c89e4eSSatish Balay PetscMallocSetDumpLog - Activates logging of all calls to PetscMalloc(). 518e5c89e4eSSatish Balay 519e5c89e4eSSatish Balay Not Collective 520e5c89e4eSSatish Balay 521e5c89e4eSSatish Balay Options Database Key: 522574034a9SJed Brown + -malloc_log <filename> - Activates PetscMallocDumpLog() 523574034a9SJed Brown - -malloc_log_threshold <min> - Activates logging and sets a minimum size 524e5c89e4eSSatish Balay 525e5c89e4eSSatish Balay Level: advanced 526e5c89e4eSSatish Balay 527574034a9SJed Brown .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocSetDumpLogThreshold() 528e5c89e4eSSatish Balay @*/ 5297087cfbeSBarry Smith PetscErrorCode PetscMallocSetDumpLog(void) 530e5c89e4eSSatish Balay { 53121b680ceSJed Brown PetscErrorCode ierr; 53221b680ceSJed Brown 533e5c89e4eSSatish Balay PetscFunctionBegin; 534e5c89e4eSSatish Balay PetscLogMalloc = 0; 535a297a907SKarl Rupp 53621b680ceSJed Brown ierr = PetscMemorySetGetMaximumUsage();CHKERRQ(ierr); 537e5c89e4eSSatish Balay PetscFunctionReturn(0); 538e5c89e4eSSatish Balay } 539e5c89e4eSSatish Balay 540e5c89e4eSSatish Balay #undef __FUNCT__ 541574034a9SJed Brown #define __FUNCT__ "PetscMallocSetDumpLogThreshold" 542574034a9SJed Brown /*@C 543574034a9SJed Brown PetscMallocSetDumpLogThreshold - Activates logging of all calls to PetscMalloc(). 544574034a9SJed Brown 545574034a9SJed Brown Not Collective 546574034a9SJed Brown 547574034a9SJed Brown Input Arguments: 548574034a9SJed Brown . logmin - minimum allocation size to log, or PETSC_DEFAULT 549574034a9SJed Brown 550574034a9SJed Brown Options Database Key: 551574034a9SJed Brown + -malloc_log <filename> - Activates PetscMallocDumpLog() 552574034a9SJed Brown - -malloc_log_threshold <min> - Activates logging and sets a minimum size 553574034a9SJed Brown 554574034a9SJed Brown Level: advanced 555574034a9SJed Brown 556574034a9SJed Brown .seealso: PetscMallocDump(), PetscMallocDumpLog(), PetscMallocSetDumpLog() 557574034a9SJed Brown @*/ 558574034a9SJed Brown PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble logmin) 559574034a9SJed Brown { 560574034a9SJed Brown PetscErrorCode ierr; 561574034a9SJed Brown 562574034a9SJed Brown PetscFunctionBegin; 563574034a9SJed Brown ierr = PetscMallocSetDumpLog();CHKERRQ(ierr); 564574034a9SJed Brown if (logmin < 0) logmin = 0.0; /* PETSC_DEFAULT or PETSC_DECIDE */ 565574034a9SJed Brown PetscLogMallocThreshold = (size_t)logmin; 566574034a9SJed Brown PetscFunctionReturn(0); 567574034a9SJed Brown } 568574034a9SJed Brown 569574034a9SJed Brown #undef __FUNCT__ 57018a2528dSJed Brown #define __FUNCT__ "PetscMallocGetDumpLog" 57118a2528dSJed Brown /*@C 57218a2528dSJed Brown PetscMallocGetDumpLog - Determine whether all calls to PetscMalloc() are being logged 57318a2528dSJed Brown 57418a2528dSJed Brown Not Collective 57518a2528dSJed Brown 57618a2528dSJed Brown Output Arguments 57718a2528dSJed Brown . logging - PETSC_TRUE if logging is active 57818a2528dSJed Brown 57918a2528dSJed Brown Options Database Key: 58018a2528dSJed Brown . -malloc_log - Activates PetscMallocDumpLog() 58118a2528dSJed Brown 58218a2528dSJed Brown Level: advanced 58318a2528dSJed Brown 58418a2528dSJed Brown .seealso: PetscMallocDump(), PetscMallocDumpLog() 58518a2528dSJed Brown @*/ 58618a2528dSJed Brown PetscErrorCode PetscMallocGetDumpLog(PetscBool *logging) 58718a2528dSJed Brown { 58818a2528dSJed Brown 58918a2528dSJed Brown PetscFunctionBegin; 59018a2528dSJed Brown *logging = (PetscBool)(PetscLogMalloc >= 0); 59118a2528dSJed Brown PetscFunctionReturn(0); 59218a2528dSJed Brown } 59318a2528dSJed Brown 59418a2528dSJed Brown #undef __FUNCT__ 595e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDumpLog" 596e5c89e4eSSatish Balay /*@C 597e5c89e4eSSatish Balay PetscMallocDumpLog - Dumps the log of all calls to PetscMalloc(); also calls 59821b680ceSJed Brown PetscMemoryGetMaximumUsage() 599e5c89e4eSSatish Balay 600e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 601e5c89e4eSSatish Balay 602e5c89e4eSSatish Balay Input Parameter: 6030298fd71SBarry Smith . fp - file pointer; or NULL 604e5c89e4eSSatish Balay 605e5c89e4eSSatish Balay Options Database Key: 606e5c89e4eSSatish Balay . -malloc_log - Activates PetscMallocDumpLog() 607e5c89e4eSSatish Balay 608e5c89e4eSSatish Balay Level: advanced 609e5c89e4eSSatish Balay 610e5c89e4eSSatish Balay Fortran Note: 611e5c89e4eSSatish Balay The calling sequence in Fortran is PetscMallocDumpLog(integer ierr) 612e5c89e4eSSatish Balay The fp defaults to stdout. 613e5c89e4eSSatish Balay 614e5c89e4eSSatish Balay .seealso: PetscMallocGetCurrentUsage(), PetscMallocDump(), PetscMallocSetDumpLog() 615e5c89e4eSSatish Balay @*/ 6167087cfbeSBarry Smith PetscErrorCode PetscMallocDumpLog(FILE *fp) 617e5c89e4eSSatish Balay { 618e5c89e4eSSatish Balay PetscInt i,j,n,dummy,*perm; 619e5c89e4eSSatish Balay size_t *shortlength; 620f56c2debSBarry Smith int *shortcount,err; 621e5c89e4eSSatish Balay PetscMPIInt rank,size,tag = 1212 /* very bad programming */; 622ace3abfcSBarry Smith PetscBool match; 623e5c89e4eSSatish Balay const char **shortfunction; 624e5c89e4eSSatish Balay PetscLogDouble rss; 625e5c89e4eSSatish Balay MPI_Status status; 626e5c89e4eSSatish Balay PetscErrorCode ierr; 627e5c89e4eSSatish Balay 628e5c89e4eSSatish Balay PetscFunctionBegin; 629e5c89e4eSSatish Balay ierr = MPI_Comm_rank(MPI_COMM_WORLD,&rank);CHKERRQ(ierr); 630e5c89e4eSSatish Balay ierr = MPI_Comm_size(MPI_COMM_WORLD,&size);CHKERRQ(ierr); 631e5c89e4eSSatish Balay /* 632e5c89e4eSSatish Balay Try to get the data printed in order by processor. This will only sometimes work 633e5c89e4eSSatish Balay */ 634f56c2debSBarry Smith err = fflush(fp); 635e32f2f54SBarry Smith if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fflush() failed on file"); 636f56c2debSBarry Smith 637e5c89e4eSSatish Balay ierr = MPI_Barrier(MPI_COMM_WORLD);CHKERRQ(ierr); 638e5c89e4eSSatish Balay if (rank) { 639e5c89e4eSSatish Balay ierr = MPI_Recv(&dummy,1,MPIU_INT,rank-1,tag,MPI_COMM_WORLD,&status);CHKERRQ(ierr); 640e5c89e4eSSatish Balay } 641e5c89e4eSSatish Balay 642768aa557SSatish Balay if (PetscLogMalloc < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"PetscMallocDumpLog() called without call to PetscMallocSetDumpLog() this is often due to\n setting the option -malloc_log AFTER PetscInitialize() with PetscOptionsInsert() or PetscOptionsInsertFile()"); 643768aa557SSatish Balay 644da9f1d6bSBarry Smith if (!fp) fp = PETSC_STDOUT; 645f3d65365SJed Brown ierr = PetscMemoryGetMaximumUsage(&rss);CHKERRQ(ierr); 646e5c89e4eSSatish Balay if (rss) { 647f3d65365SJed Brown ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f maximum size of entire process %.0f\n",rank,(PetscLogDouble)TRMaxMem,rss);CHKERRQ(ierr); 648e5c89e4eSSatish Balay } else { 649e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Maximum memory PetscMalloc()ed %.0f OS cannot compute size of entire process\n",rank,(PetscLogDouble)TRMaxMem);CHKERRQ(ierr); 650e5c89e4eSSatish Balay } 651e32f2f54SBarry Smith shortcount = (int*)malloc(PetscLogMalloc*sizeof(int));if (!shortcount) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory"); 652e32f2f54SBarry Smith shortlength = (size_t*)malloc(PetscLogMalloc*sizeof(size_t));if (!shortlength) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory"); 653e32f2f54SBarry Smith shortfunction = (const char**)malloc(PetscLogMalloc*sizeof(char*));if (!shortfunction) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory"); 65497b9d747SJed Brown for (i=0,n=0; i<PetscLogMalloc; i++) { 655e5c89e4eSSatish Balay for (j=0; j<n; j++) { 656e5c89e4eSSatish Balay ierr = PetscStrcmp(shortfunction[j],PetscLogMallocFunction[i],&match);CHKERRQ(ierr); 657e5c89e4eSSatish Balay if (match) { 658e5c89e4eSSatish Balay shortlength[j] += PetscLogMallocLength[i]; 65959ffdab8SBarry Smith shortcount[j]++; 660e5c89e4eSSatish Balay goto foundit; 661e5c89e4eSSatish Balay } 662e5c89e4eSSatish Balay } 663e5c89e4eSSatish Balay shortfunction[n] = PetscLogMallocFunction[i]; 664e5c89e4eSSatish Balay shortlength[n] = PetscLogMallocLength[i]; 66559ffdab8SBarry Smith shortcount[n] = 1; 666e5c89e4eSSatish Balay n++; 667e5c89e4eSSatish Balay foundit:; 668e5c89e4eSSatish Balay } 669e5c89e4eSSatish Balay 670e32f2f54SBarry Smith perm = (PetscInt*)malloc(n*sizeof(PetscInt));if (!perm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"Out of memory"); 671e5c89e4eSSatish Balay for (i=0; i<n; i++) perm[i] = i; 672e5c89e4eSSatish Balay ierr = PetscSortStrWithPermutation(n,(const char**)shortfunction,perm);CHKERRQ(ierr); 673e5c89e4eSSatish Balay 674e5c89e4eSSatish Balay ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] Memory usage sorted by function\n",rank);CHKERRQ(ierr); 675e5c89e4eSSatish Balay for (i=0; i<n; i++) { 67659ffdab8SBarry Smith ierr = PetscFPrintf(MPI_COMM_WORLD,fp,"[%d] %d %.0f %s()\n",rank,shortcount[perm[i]],(PetscLogDouble)shortlength[perm[i]],shortfunction[perm[i]]);CHKERRQ(ierr); 677e5c89e4eSSatish Balay } 678e5c89e4eSSatish Balay free(perm); 679e5c89e4eSSatish Balay free(shortlength); 68059ffdab8SBarry Smith free(shortcount); 681e5c89e4eSSatish Balay free((char**)shortfunction); 682f56c2debSBarry Smith err = fflush(fp); 683e32f2f54SBarry Smith if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fflush() failed on file"); 684e5c89e4eSSatish Balay if (rank != size-1) { 685e5c89e4eSSatish Balay ierr = MPI_Send(&dummy,1,MPIU_INT,rank+1,tag,MPI_COMM_WORLD);CHKERRQ(ierr); 686e5c89e4eSSatish Balay } 687e5c89e4eSSatish Balay PetscFunctionReturn(0); 688e5c89e4eSSatish Balay } 689e5c89e4eSSatish Balay 690e5c89e4eSSatish Balay /* ---------------------------------------------------------------------------- */ 691e5c89e4eSSatish Balay 692e5c89e4eSSatish Balay #undef __FUNCT__ 693e5c89e4eSSatish Balay #define __FUNCT__ "PetscMallocDebug" 694e5c89e4eSSatish Balay /*@C 695e5c89e4eSSatish Balay PetscMallocDebug - Turns on/off debugging for the memory management routines. 696e5c89e4eSSatish Balay 697e5c89e4eSSatish Balay Not Collective 698e5c89e4eSSatish Balay 699e5c89e4eSSatish Balay Input Parameter: 700e5c89e4eSSatish Balay . level - PETSC_TRUE or PETSC_FALSE 701e5c89e4eSSatish Balay 702e5c89e4eSSatish Balay Level: intermediate 703e5c89e4eSSatish Balay 704e5c89e4eSSatish Balay .seealso: CHKMEMQ(), PetscMallocValidate() 705e5c89e4eSSatish Balay @*/ 7067087cfbeSBarry Smith PetscErrorCode PetscMallocDebug(PetscBool level) 707e5c89e4eSSatish Balay { 708e5c89e4eSSatish Balay PetscFunctionBegin; 709e5c89e4eSSatish Balay TRdebugLevel = level; 710e5c89e4eSSatish Balay PetscFunctionReturn(0); 711e5c89e4eSSatish Balay } 7120acecf5bSBarry Smith 7130acecf5bSBarry Smith #undef __FUNCT__ 7140acecf5bSBarry Smith #define __FUNCT__ "PetscMallocGetDebug" 7150acecf5bSBarry Smith /*@C 7160acecf5bSBarry Smith PetscMallocGetDebug - Indicates if any PETSc is doing ANY memory debugging. 7170acecf5bSBarry Smith 7180acecf5bSBarry Smith Not Collective 7190acecf5bSBarry Smith 7200acecf5bSBarry Smith Output Parameter: 7210acecf5bSBarry Smith . flg - PETSC_TRUE if any debugger 7220acecf5bSBarry Smith 7230acecf5bSBarry Smith Level: intermediate 7240acecf5bSBarry Smith 7250acecf5bSBarry Smith Note that by default, the debug version always does some debugging unless you run with -malloc no 7260acecf5bSBarry Smith 7270acecf5bSBarry Smith 7280acecf5bSBarry Smith .seealso: CHKMEMQ(), PetscMallocValidate() 7290acecf5bSBarry Smith @*/ 7300acecf5bSBarry Smith PetscErrorCode PetscMallocGetDebug(PetscBool *flg) 7310acecf5bSBarry Smith { 7320acecf5bSBarry Smith PetscFunctionBegin; 7330acecf5bSBarry Smith if (PetscTrMalloc == PetscTrMallocDefault) *flg = PETSC_TRUE; 7340acecf5bSBarry Smith else *flg = PETSC_FALSE; 7350acecf5bSBarry Smith PetscFunctionReturn(0); 7360acecf5bSBarry Smith } 737