1e5c89e4eSSatish Balay #define PETSC_DLL 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay 4e5c89e4eSSatish Balay This file defines part of the initialization of PETSc 5e5c89e4eSSatish Balay 6e5c89e4eSSatish Balay This file uses regular malloc and free because it cannot know 7e5c89e4eSSatish Balay what malloc is being used until it has already processed the input. 8e5c89e4eSSatish Balay */ 9e5c89e4eSSatish Balay 10e5c89e4eSSatish Balay #include "petsc.h" /*I "petsc.h" I*/ 11e5c89e4eSSatish Balay #include "petscsys.h" 12e5c89e4eSSatish Balay #if defined(PETSC_HAVE_STDLIB_H) 13e5c89e4eSSatish Balay #include <stdlib.h> 14e5c89e4eSSatish Balay #endif 15e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MALLOC_H) 16e5c89e4eSSatish Balay #include <malloc.h> 17e5c89e4eSSatish Balay #endif 18e5c89e4eSSatish Balay #include "petscfix.h" 19e5c89e4eSSatish Balay 20e5c89e4eSSatish Balay /* ------------------------Nasty global variables -------------------------------*/ 21e5c89e4eSSatish Balay /* 22e5c89e4eSSatish Balay Indicates if PETSc started up MPI, or it was 23e5c89e4eSSatish Balay already started before PETSc was initialized. 24e5c89e4eSSatish Balay */ 25e5c89e4eSSatish Balay PetscTruth PETSC_DLLEXPORT PetscBeganMPI = PETSC_FALSE; 26e5c89e4eSSatish Balay PetscTruth PETSC_DLLEXPORT PetscInitializeCalled = PETSC_FALSE; 27e5c89e4eSSatish Balay PetscTruth PETSC_DLLEXPORT PetscFinalizeCalled = PETSC_FALSE; 28e5c89e4eSSatish Balay PetscMPIInt PETSC_DLLEXPORT PetscGlobalRank = -1; 29e5c89e4eSSatish Balay PetscMPIInt PETSC_DLLEXPORT PetscGlobalSize = -1; 30e5c89e4eSSatish Balay 31e5c89e4eSSatish Balay #if defined(PETSC_USE_COMPLEX) 32e5c89e4eSSatish Balay #if defined(PETSC_COMPLEX_INSTANTIATE) 33e5c89e4eSSatish Balay template <> class std::complex<double>; /* instantiate complex template class */ 34e5c89e4eSSatish Balay #endif 35e5c89e4eSSatish Balay MPI_Datatype PETSC_DLLEXPORT MPIU_COMPLEX; 36e5c89e4eSSatish Balay PetscScalar PETSC_DLLEXPORT PETSC_i; 37e5c89e4eSSatish Balay #else 38e5c89e4eSSatish Balay PetscScalar PETSC_DLLEXPORT PETSC_i = 0.0; 39e5c89e4eSSatish Balay #endif 40e5c89e4eSSatish Balay MPI_Datatype PETSC_DLLEXPORT MPIU_2SCALAR = 0; 41e5c89e4eSSatish Balay MPI_Datatype PETSC_DLLEXPORT MPIU_2INT = 0; 42e5c89e4eSSatish Balay /* 43e5c89e4eSSatish Balay These are needed by petscbt.h 44e5c89e4eSSatish Balay */ 45e5c89e4eSSatish Balay char PETSC_DLLEXPORT _BT_mask = ' '; 46e5c89e4eSSatish Balay char PETSC_DLLEXPORT _BT_c = ' '; 47e5c89e4eSSatish Balay PetscInt PETSC_DLLEXPORT _BT_idx = 0; 48e5c89e4eSSatish Balay 49e5c89e4eSSatish Balay /* 50e5c89e4eSSatish Balay Function that is called to display all error messages 51e5c89e4eSSatish Balay */ 52e5c89e4eSSatish Balay EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 53e5c89e4eSSatish Balay EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 54e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT (*PetscErrorPrintf)(const char [],...) = PetscErrorPrintfDefault; 55e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT (*PetscHelpPrintf)(MPI_Comm,const char [],...) = PetscHelpPrintfDefault; 56e5c89e4eSSatish Balay 57e5c89e4eSSatish Balay /* ------------------------------------------------------------------------------*/ 58e5c89e4eSSatish Balay /* 59e5c89e4eSSatish Balay Optional file where all PETSc output from various prints is saved 60e5c89e4eSSatish Balay */ 61e5c89e4eSSatish Balay FILE *petsc_history = PETSC_NULL; 62e5c89e4eSSatish Balay 63e5c89e4eSSatish Balay #undef __FUNCT__ 64e5c89e4eSSatish Balay #define __FUNCT__ "PetscLogOpenHistoryFile" 65e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscLogOpenHistoryFile(const char filename[],FILE **fd) 66e5c89e4eSSatish Balay { 67e5c89e4eSSatish Balay PetscErrorCode ierr; 68e5c89e4eSSatish Balay PetscMPIInt rank,size; 69e5c89e4eSSatish Balay char pfile[PETSC_MAX_PATH_LEN],pname[PETSC_MAX_PATH_LEN],fname[PETSC_MAX_PATH_LEN],date[64]; 70e5c89e4eSSatish Balay char version[256]; 71e5c89e4eSSatish Balay 72e5c89e4eSSatish Balay PetscFunctionBegin; 73e5c89e4eSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 74e5c89e4eSSatish Balay if (!rank) { 75e5c89e4eSSatish Balay char arch[10]; 76e5c89e4eSSatish Balay ierr = PetscGetArchType(arch,10);CHKERRQ(ierr); 77e5c89e4eSSatish Balay ierr = PetscGetDate(date,64);CHKERRQ(ierr); 78e5c89e4eSSatish Balay ierr = PetscGetVersion(&version);CHKERRQ(ierr); 79e5c89e4eSSatish Balay ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 80e5c89e4eSSatish Balay if (filename) { 81e5c89e4eSSatish Balay ierr = PetscFixFilename(filename,fname);CHKERRQ(ierr); 82e5c89e4eSSatish Balay } else { 83e5c89e4eSSatish Balay ierr = PetscGetHomeDirectory(pfile,240);CHKERRQ(ierr); 84e5c89e4eSSatish Balay ierr = PetscStrcat(pfile,"/.petschistory");CHKERRQ(ierr); 85e5c89e4eSSatish Balay ierr = PetscFixFilename(pfile,fname);CHKERRQ(ierr); 86e5c89e4eSSatish Balay } 87e5c89e4eSSatish Balay 88e5c89e4eSSatish Balay *fd = fopen(fname,"a"); if (!fd) SETERRQ1(PETSC_ERR_FILE_OPEN,"Cannot open file: %s",fname); 89e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"---------------------------------------------------------\n");CHKERRQ(ierr); 90e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"%s %s\n",version,date);CHKERRQ(ierr); 91e5c89e4eSSatish Balay ierr = PetscGetProgramName(pname,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 92e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"%s on a %s, %d proc. with options:\n",pname,arch,size);CHKERRQ(ierr); 93e5c89e4eSSatish Balay ierr = PetscOptionsPrint(*fd);CHKERRQ(ierr); 94e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"---------------------------------------------------------\n");CHKERRQ(ierr); 95e5c89e4eSSatish Balay fflush(*fd); 96e5c89e4eSSatish Balay } 97e5c89e4eSSatish Balay PetscFunctionReturn(0); 98e5c89e4eSSatish Balay } 99e5c89e4eSSatish Balay 100e5c89e4eSSatish Balay #undef __FUNCT__ 101e5c89e4eSSatish Balay #define __FUNCT__ "PetscLogCloseHistoryFile" 102e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscLogCloseHistoryFile(FILE **fd) 103e5c89e4eSSatish Balay { 104e5c89e4eSSatish Balay PetscErrorCode ierr; 105e5c89e4eSSatish Balay PetscMPIInt rank; 106e5c89e4eSSatish Balay char date[64]; 107e5c89e4eSSatish Balay 108e5c89e4eSSatish Balay PetscFunctionBegin; 109e5c89e4eSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 110e5c89e4eSSatish Balay if (!rank) { 111e5c89e4eSSatish Balay ierr = PetscGetDate(date,64);CHKERRQ(ierr); 112e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"---------------------------------------------------------\n");CHKERRQ(ierr); 113e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"Finished at %s\n",date);CHKERRQ(ierr); 114e5c89e4eSSatish Balay ierr = PetscFPrintf(PETSC_COMM_SELF,*fd,"---------------------------------------------------------\n");CHKERRQ(ierr); 115e5c89e4eSSatish Balay fflush(*fd); 116e5c89e4eSSatish Balay fclose(*fd); 117e5c89e4eSSatish Balay } 118e5c89e4eSSatish Balay PetscFunctionReturn(0); 119e5c89e4eSSatish Balay } 120e5c89e4eSSatish Balay 121e5c89e4eSSatish Balay /* ------------------------------------------------------------------------------*/ 122e5c89e4eSSatish Balay 123e5c89e4eSSatish Balay /* 124e5c89e4eSSatish Balay This is ugly and probably belongs somewhere else, but I want to 125e5c89e4eSSatish Balay be able to put a true MPI abort error handler with command line args. 126e5c89e4eSSatish Balay 127e5c89e4eSSatish Balay This is so MPI errors in the debugger will leave all the stack 128e5c89e4eSSatish Balay frames. The default abort cleans up and exits. 129e5c89e4eSSatish Balay */ 130e5c89e4eSSatish Balay 131e5c89e4eSSatish Balay #undef __FUNCT__ 132e5c89e4eSSatish Balay #define __FUNCT__ "Petsc_MPI_AbortOnError" 133e5c89e4eSSatish Balay void Petsc_MPI_AbortOnError(MPI_Comm *comm,PetscMPIInt *flag) 134e5c89e4eSSatish Balay { 135e5c89e4eSSatish Balay PetscFunctionBegin; 136e5c89e4eSSatish Balay (*PetscErrorPrintf)("MPI error %d\n",(int)*flag); 137e5c89e4eSSatish Balay abort(); 138e5c89e4eSSatish Balay } 139e5c89e4eSSatish Balay 140e5c89e4eSSatish Balay #undef __FUNCT__ 141e5c89e4eSSatish Balay #define __FUNCT__ "Petsc_MPI_DebuggerOnError" 142e5c89e4eSSatish Balay void Petsc_MPI_DebuggerOnError(MPI_Comm *comm,PetscMPIInt *flag) 143e5c89e4eSSatish Balay { 144e5c89e4eSSatish Balay PetscErrorCode ierr; 145e5c89e4eSSatish Balay 146e5c89e4eSSatish Balay PetscFunctionBegin; 147e5c89e4eSSatish Balay (*PetscErrorPrintf)("MPI error %d\n",(int)*flag); 148e5c89e4eSSatish Balay ierr = PetscAttachDebugger(); 149e5c89e4eSSatish Balay if (ierr) { /* hopeless so get out */ 150e5c89e4eSSatish Balay MPI_Finalize(); 151e5c89e4eSSatish Balay exit(*flag); 152e5c89e4eSSatish Balay } 153e5c89e4eSSatish Balay } 154e5c89e4eSSatish Balay 155e5c89e4eSSatish Balay #undef __FUNCT__ 156e5c89e4eSSatish Balay #define __FUNCT__ "PetscEnd" 157e5c89e4eSSatish Balay /*@C 158e5c89e4eSSatish Balay PetscEnd - Calls PetscFinalize() and then ends the program. This is useful if one 159e5c89e4eSSatish Balay wishes a clean exit somewhere deep in the program. 160e5c89e4eSSatish Balay 161e5c89e4eSSatish Balay Collective on PETSC_COMM_WORLD 162e5c89e4eSSatish Balay 163e5c89e4eSSatish Balay Options Database Keys are the same as for PetscFinalize() 164e5c89e4eSSatish Balay 165e5c89e4eSSatish Balay Level: advanced 166e5c89e4eSSatish Balay 167e5c89e4eSSatish Balay Note: 168e5c89e4eSSatish Balay See PetscInitialize() for more general runtime options. 169e5c89e4eSSatish Balay 170e5c89e4eSSatish Balay .seealso: PetscInitialize(), PetscOptionsPrint(), PetscMallocDump(), PetscMPIDump(), PetscFinalize() 171e5c89e4eSSatish Balay @*/ 172e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscEnd(void) 173e5c89e4eSSatish Balay { 174e5c89e4eSSatish Balay PetscFunctionBegin; 175e5c89e4eSSatish Balay PetscFinalize(); 176e5c89e4eSSatish Balay exit(0); 177e5c89e4eSSatish Balay return 0; 178e5c89e4eSSatish Balay } 179e5c89e4eSSatish Balay 180e5c89e4eSSatish Balay PetscTruth PetscOptionsPublish = PETSC_FALSE; 181e5c89e4eSSatish Balay EXTERN PetscErrorCode PetscSetUseTrMalloc_Private(void); 182e5c89e4eSSatish Balay extern PetscTruth petscsetmallocvisited; 183e5c89e4eSSatish Balay static char emacsmachinename[256]; 184e5c89e4eSSatish Balay 185e5c89e4eSSatish Balay PetscErrorCode (*PetscExternalVersionFunction)(MPI_Comm) = 0; 186e5c89e4eSSatish Balay PetscErrorCode (*PetscExternalHelpFunction)(MPI_Comm) = 0; 187e5c89e4eSSatish Balay 188e5c89e4eSSatish Balay #undef __FUNCT__ 189e5c89e4eSSatish Balay #define __FUNCT__ "PetscSetHelpVersionFunctions" 190e5c89e4eSSatish Balay /*@C 191e5c89e4eSSatish Balay PetscSetHelpVersionFunctions - Sets functions that print help and version information 192e5c89e4eSSatish Balay before the PETSc help and version information is printed. Must call BEFORE PetscInitialize(). 193e5c89e4eSSatish Balay This routine enables a "higher-level" package that uses PETSc to print its messages first. 194e5c89e4eSSatish Balay 195e5c89e4eSSatish Balay Input Parameter: 196e5c89e4eSSatish Balay + help - the help function (may be PETSC_NULL) 197e5c89e4eSSatish Balay - version - the version function (may be PETSc null) 198e5c89e4eSSatish Balay 199e5c89e4eSSatish Balay Level: developer 200e5c89e4eSSatish Balay 201e5c89e4eSSatish Balay Concepts: package help message 202e5c89e4eSSatish Balay 203e5c89e4eSSatish Balay @*/ 204e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscSetHelpVersionFunctions(PetscErrorCode (*help)(MPI_Comm),PetscErrorCode (*version)(MPI_Comm)) 205e5c89e4eSSatish Balay { 206e5c89e4eSSatish Balay PetscFunctionBegin; 207e5c89e4eSSatish Balay PetscExternalHelpFunction = help; 208e5c89e4eSSatish Balay PetscExternalVersionFunction = version; 209e5c89e4eSSatish Balay PetscFunctionReturn(0); 210e5c89e4eSSatish Balay } 211e5c89e4eSSatish Balay 212e5c89e4eSSatish Balay #undef __FUNCT__ 213e5c89e4eSSatish Balay #define __FUNCT__ "PetscOptionsCheckInitial_Private" 214e5c89e4eSSatish Balay PetscErrorCode PETSC_DLLEXPORT PetscOptionsCheckInitial_Private(void) 215e5c89e4eSSatish Balay { 216e5c89e4eSSatish Balay char string[64],mname[PETSC_MAX_PATH_LEN],*f; 217e5c89e4eSSatish Balay MPI_Comm comm = PETSC_COMM_WORLD; 218e5c89e4eSSatish Balay PetscTruth flg1,flg2,flg3,flag; 219e5c89e4eSSatish Balay PetscErrorCode ierr; 220e5c89e4eSSatish Balay PetscInt si; 221e5c89e4eSSatish Balay int i; 222e5c89e4eSSatish Balay PetscMPIInt rank; 223e5c89e4eSSatish Balay char version[256]; 224e5c89e4eSSatish Balay 225e5c89e4eSSatish Balay PetscFunctionBegin; 226e5c89e4eSSatish Balay ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 227e5c89e4eSSatish Balay 228e5c89e4eSSatish Balay /* 229e5c89e4eSSatish Balay Setup the memory management; support for tracing malloc() usage 230e5c89e4eSSatish Balay */ 231e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-malloc_log",&flg3);CHKERRQ(ierr); 232e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 233e5c89e4eSSatish Balay ierr = PetscOptionsGetTruth(PETSC_NULL,"-malloc",&flg1,&flg2);CHKERRQ(ierr); 234e5c89e4eSSatish Balay if ((!flg2 || flg1) && !petscsetmallocvisited) { 235e5c89e4eSSatish Balay ierr = PetscSetUseTrMalloc_Private();CHKERRQ(ierr); 236e5c89e4eSSatish Balay } 237e5c89e4eSSatish Balay #else 238e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 239e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-malloc",&flg2);CHKERRQ(ierr); 240e5c89e4eSSatish Balay if (flg1 || flg2 || flg3) {ierr = PetscSetUseTrMalloc_Private();CHKERRQ(ierr);} 241e5c89e4eSSatish Balay #endif 242e5c89e4eSSatish Balay if (flg3) { 243e5c89e4eSSatish Balay ierr = PetscMallocSetDumpLog();CHKERRQ(ierr); 244e5c89e4eSSatish Balay } 245e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-malloc_debug",&flg1);CHKERRQ(ierr); 246e5c89e4eSSatish Balay if (flg1) { 247e5c89e4eSSatish Balay ierr = PetscSetUseTrMalloc_Private();CHKERRQ(ierr); 248e5c89e4eSSatish Balay ierr = PetscMallocDebug(PETSC_TRUE);CHKERRQ(ierr); 249e5c89e4eSSatish Balay } 250e5c89e4eSSatish Balay 251e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-memory_info",&flg1);CHKERRQ(ierr); 252e5c89e4eSSatish Balay if (flg1) { 253e5c89e4eSSatish Balay ierr = PetscMemorySetGetMaximumUsage();CHKERRQ(ierr); 254e5c89e4eSSatish Balay } 255e5c89e4eSSatish Balay 256e5c89e4eSSatish Balay /* 257e5c89e4eSSatish Balay Set the display variable for graphics 258e5c89e4eSSatish Balay */ 259e5c89e4eSSatish Balay ierr = PetscSetDisplay();CHKERRQ(ierr); 260e5c89e4eSSatish Balay 261e5c89e4eSSatish Balay /* 262e5c89e4eSSatish Balay Print the PETSc version information 263e5c89e4eSSatish Balay */ 264e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-v",&flg1);CHKERRQ(ierr); 265e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-version",&flg2);CHKERRQ(ierr); 266e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-help",&flg3);CHKERRQ(ierr); 267e5c89e4eSSatish Balay if (flg1 || flg2 || flg3){ 268e5c89e4eSSatish Balay 269e5c89e4eSSatish Balay /* 270e5c89e4eSSatish Balay Print "higher-level" package version message 271e5c89e4eSSatish Balay */ 272e5c89e4eSSatish Balay if (PetscExternalVersionFunction) { 273e5c89e4eSSatish Balay ierr = (*PetscExternalVersionFunction)(comm);CHKERRQ(ierr); 274e5c89e4eSSatish Balay } 275e5c89e4eSSatish Balay 276e5c89e4eSSatish Balay ierr = PetscGetVersion(&version);CHKERRQ(ierr); 277e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"--------------------------------------------\ 278e5c89e4eSSatish Balay ------------------------------\n");CHKERRQ(ierr); 279e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"%s\n",version);CHKERRQ(ierr); 280e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"%s",PETSC_AUTHOR_INFO);CHKERRQ(ierr); 281e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"See docs/copyright.html for copyright information\n");CHKERRQ(ierr); 282e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"See docs/changes/index.html for recent updates.\n");CHKERRQ(ierr); 283e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"See docs/troubleshooting.html for problems.\n");CHKERRQ(ierr); 284e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"See docs/manualpages/index.html for help. \n");CHKERRQ(ierr); 285e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"Libraries linked from %s\n",PETSC_LIB_DIR);CHKERRQ(ierr); 286e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"--------------------------------------------\ 287e5c89e4eSSatish Balay ------------------------------\n");CHKERRQ(ierr); 288e5c89e4eSSatish Balay } 289e5c89e4eSSatish Balay 290e5c89e4eSSatish Balay /* 291e5c89e4eSSatish Balay Print "higher-level" package help message 292e5c89e4eSSatish Balay */ 293e5c89e4eSSatish Balay if (flg3){ 294e5c89e4eSSatish Balay if (PetscExternalHelpFunction) { 295e5c89e4eSSatish Balay ierr = (*PetscExternalHelpFunction)(comm);CHKERRQ(ierr); 296e5c89e4eSSatish Balay } 297e5c89e4eSSatish Balay } 298e5c89e4eSSatish Balay 299e5c89e4eSSatish Balay /* 300e5c89e4eSSatish Balay Setup the error handling 301e5c89e4eSSatish Balay */ 302e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-fp_trap",&flg1);CHKERRQ(ierr); 303e5c89e4eSSatish Balay if (flg1) { ierr = PetscSetFPTrap(PETSC_FP_TRAP_ON);CHKERRQ(ierr); } 304e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-on_error_abort",&flg1);CHKERRQ(ierr); 305e5c89e4eSSatish Balay if (flg1) { ierr = PetscPushErrorHandler(PetscAbortErrorHandler,0);CHKERRQ(ierr)} 306e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-on_error_stop",&flg1);CHKERRQ(ierr); 307e5c89e4eSSatish Balay if (flg1) { ierr = PetscPushErrorHandler(PetscStopErrorHandler,0);CHKERRQ(ierr)} 308e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-mpi_return_on_error",&flg1);CHKERRQ(ierr); 309e5c89e4eSSatish Balay if (flg1) { 310e5c89e4eSSatish Balay ierr = MPI_Errhandler_set(comm,MPI_ERRORS_RETURN);CHKERRQ(ierr); 311e5c89e4eSSatish Balay } 312e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-no_signal_handler",&flg1);CHKERRQ(ierr); 313e5c89e4eSSatish Balay if (!flg1) { ierr = PetscPushSignalHandler(PetscDefaultSignalHandler,(void*)0);CHKERRQ(ierr) } 314e5c89e4eSSatish Balay 315e5c89e4eSSatish Balay /* 316e5c89e4eSSatish Balay Setup debugger information 317e5c89e4eSSatish Balay */ 318e5c89e4eSSatish Balay ierr = PetscSetDefaultDebugger();CHKERRQ(ierr); 319e5c89e4eSSatish Balay ierr = PetscOptionsGetString(PETSC_NULL,"-on_error_attach_debugger",string,64,&flg1);CHKERRQ(ierr); 320e5c89e4eSSatish Balay if (flg1) { 321e5c89e4eSSatish Balay MPI_Errhandler err_handler; 322e5c89e4eSSatish Balay 323e5c89e4eSSatish Balay ierr = PetscSetDebuggerFromString(string);CHKERRQ(ierr); 324e5c89e4eSSatish Balay ierr = MPI_Errhandler_create((MPI_Handler_function*)Petsc_MPI_DebuggerOnError,&err_handler);CHKERRQ(ierr); 325e5c89e4eSSatish Balay ierr = MPI_Errhandler_set(comm,err_handler);CHKERRQ(ierr); 326e5c89e4eSSatish Balay ierr = PetscPushErrorHandler(PetscAttachDebuggerErrorHandler,0);CHKERRQ(ierr); 327e5c89e4eSSatish Balay } 328e5c89e4eSSatish Balay ierr = PetscOptionsGetString(PETSC_NULL,"-start_in_debugger",string,64,&flg1);CHKERRQ(ierr); 329e5c89e4eSSatish Balay ierr = PetscOptionsGetString(PETSC_NULL,"-stop_for_debugger",string,64,&flg2);CHKERRQ(ierr); 330e5c89e4eSSatish Balay if (flg1 || flg2) { 331e5c89e4eSSatish Balay PetscMPIInt size; 332e5c89e4eSSatish Balay PetscInt lsize,*nodes; 333e5c89e4eSSatish Balay MPI_Errhandler err_handler; 334e5c89e4eSSatish Balay /* 335e5c89e4eSSatish Balay we have to make sure that all processors have opened 336e5c89e4eSSatish Balay connections to all other processors, otherwise once the 337e5c89e4eSSatish Balay debugger has stated it is likely to receive a SIGUSR1 338e5c89e4eSSatish Balay and kill the program. 339e5c89e4eSSatish Balay */ 340e5c89e4eSSatish Balay ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 341e5c89e4eSSatish Balay if (size > 2) { 342e5c89e4eSSatish Balay PetscMPIInt dummy; 343e5c89e4eSSatish Balay MPI_Status status; 344e5c89e4eSSatish Balay for (i=0; i<size; i++) { 345e5c89e4eSSatish Balay if (rank != i) { 346e5c89e4eSSatish Balay ierr = MPI_Send(&dummy,1,MPI_INT,i,109,PETSC_COMM_WORLD);CHKERRQ(ierr); 347e5c89e4eSSatish Balay } 348e5c89e4eSSatish Balay } 349e5c89e4eSSatish Balay for (i=0; i<size; i++) { 350e5c89e4eSSatish Balay if (rank != i) { 351e5c89e4eSSatish Balay ierr = MPI_Recv(&dummy,1,MPI_INT,i,109,PETSC_COMM_WORLD,&status);CHKERRQ(ierr); 352e5c89e4eSSatish Balay } 353e5c89e4eSSatish Balay } 354e5c89e4eSSatish Balay } 355e5c89e4eSSatish Balay /* check if this processor node should be in debugger */ 356e5c89e4eSSatish Balay ierr = PetscMalloc(size*sizeof(PetscInt),&nodes);CHKERRQ(ierr); 357e5c89e4eSSatish Balay lsize = size; 358e5c89e4eSSatish Balay ierr = PetscOptionsGetIntArray(PETSC_NULL,"-debugger_nodes",nodes,&lsize,&flag);CHKERRQ(ierr); 359e5c89e4eSSatish Balay if (flag) { 360e5c89e4eSSatish Balay for (i=0; i<lsize; i++) { 361e5c89e4eSSatish Balay if (nodes[i] == rank) { flag = PETSC_FALSE; break; } 362e5c89e4eSSatish Balay } 363e5c89e4eSSatish Balay } 364e5c89e4eSSatish Balay if (!flag) { 365e5c89e4eSSatish Balay ierr = PetscSetDebuggerFromString(string);CHKERRQ(ierr); 366e5c89e4eSSatish Balay ierr = PetscPushErrorHandler(PetscAbortErrorHandler,0);CHKERRQ(ierr); 367e5c89e4eSSatish Balay if (flg1) { 368e5c89e4eSSatish Balay ierr = PetscAttachDebugger();CHKERRQ(ierr); 369e5c89e4eSSatish Balay } else { 370e5c89e4eSSatish Balay ierr = PetscStopForDebugger();CHKERRQ(ierr); 371e5c89e4eSSatish Balay } 372e5c89e4eSSatish Balay ierr = MPI_Errhandler_create((MPI_Handler_function*)Petsc_MPI_AbortOnError,&err_handler);CHKERRQ(ierr); 373e5c89e4eSSatish Balay ierr = MPI_Errhandler_set(comm,err_handler);CHKERRQ(ierr); 374e5c89e4eSSatish Balay } 375e5c89e4eSSatish Balay ierr = PetscFree(nodes);CHKERRQ(ierr); 376e5c89e4eSSatish Balay } 377e5c89e4eSSatish Balay 378e5c89e4eSSatish Balay ierr = PetscOptionsGetString(PETSC_NULL,"-on_error_emacs",emacsmachinename,128,&flg1);CHKERRQ(ierr); 379e5c89e4eSSatish Balay if (flg1 && !rank) {ierr = PetscPushErrorHandler(PetscEmacsClientErrorHandler,emacsmachinename);CHKERRQ(ierr)} 380e5c89e4eSSatish Balay 381e5c89e4eSSatish Balay /* 382e5c89e4eSSatish Balay Setup profiling and logging 383e5c89e4eSSatish Balay */ 384*6cf91177SBarry Smith #if defined (PETSC_USE_INFO) 385*6cf91177SBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-info",&flg1);CHKERRQ(ierr); 386e5c89e4eSSatish Balay if (flg1) { 387e5c89e4eSSatish Balay char logname[PETSC_MAX_PATH_LEN]; logname[0] = 0; 388*6cf91177SBarry Smith ierr = PetscOptionsGetString(PETSC_NULL,"-info",logname,250,&flg1);CHKERRQ(ierr); 389e5c89e4eSSatish Balay if (logname[0]) { 390*6cf91177SBarry Smith PetscInfoAllow(PETSC_TRUE,logname); 391e5c89e4eSSatish Balay } else { 392*6cf91177SBarry Smith PetscInfoAllow(PETSC_TRUE,PETSC_NULL); 393e5c89e4eSSatish Balay } 394e5c89e4eSSatish Balay } 395865f6aa8SSatish Balay #endif 396865f6aa8SSatish Balay #if defined(PETSC_USE_LOG) 397865f6aa8SSatish Balay mname[0] = 0; 398865f6aa8SSatish Balay ierr = PetscOptionsGetString(PETSC_NULL,"-log_history",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 399865f6aa8SSatish Balay if (flg1) { 400865f6aa8SSatish Balay if (mname[0]) { 401865f6aa8SSatish Balay ierr = PetscLogOpenHistoryFile(mname,&petsc_history);CHKERRQ(ierr); 402865f6aa8SSatish Balay } else { 403865f6aa8SSatish Balay ierr = PetscLogOpenHistoryFile(0,&petsc_history);CHKERRQ(ierr); 404865f6aa8SSatish Balay } 405865f6aa8SSatish Balay } 406e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MPE) 407e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-log_mpe",&flg1);CHKERRQ(ierr); 408e5c89e4eSSatish Balay if (flg1) PetscLogMPEBegin(); 409e5c89e4eSSatish Balay #endif 410e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-log_all",&flg1);CHKERRQ(ierr); 411e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-log",&flg2);CHKERRQ(ierr); 412e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-log_summary",&flg3);CHKERRQ(ierr); 413e5c89e4eSSatish Balay if (flg1) { ierr = PetscLogAllBegin();CHKERRQ(ierr); } 414e5c89e4eSSatish Balay else if (flg2 || flg3) { ierr = PetscLogBegin();CHKERRQ(ierr);} 415e5c89e4eSSatish Balay 416e5c89e4eSSatish Balay ierr = PetscOptionsGetString(PETSC_NULL,"-log_trace",mname,250,&flg1);CHKERRQ(ierr); 417e5c89e4eSSatish Balay if (flg1) { 418e5c89e4eSSatish Balay char name[PETSC_MAX_PATH_LEN],fname[PETSC_MAX_PATH_LEN]; 419e5c89e4eSSatish Balay FILE *file; 420e5c89e4eSSatish Balay if (mname[0]) { 421e5c89e4eSSatish Balay sprintf(name,"%s.%d",mname,rank); 422e5c89e4eSSatish Balay ierr = PetscFixFilename(name,fname);CHKERRQ(ierr); 423e5c89e4eSSatish Balay file = fopen(fname,"w"); 424e5c89e4eSSatish Balay if (!file) { 425e5c89e4eSSatish Balay SETERRQ1(PETSC_ERR_FILE_OPEN,"Unable to open trace file: %s",fname); 426e5c89e4eSSatish Balay } 427e5c89e4eSSatish Balay } else { 428e5c89e4eSSatish Balay file = stdout; 429e5c89e4eSSatish Balay } 430e5c89e4eSSatish Balay ierr = PetscLogTraceBegin(file);CHKERRQ(ierr); 431e5c89e4eSSatish Balay } 432e5c89e4eSSatish Balay #endif 433e5c89e4eSSatish Balay 434e5c89e4eSSatish Balay /* 435e5c89e4eSSatish Balay Setup building of stack frames for all function calls 436e5c89e4eSSatish Balay */ 437e5c89e4eSSatish Balay #if defined(PETSC_USE_DEBUG) 438e5c89e4eSSatish Balay ierr = PetscStackCreate();CHKERRQ(ierr); 439e5c89e4eSSatish Balay #endif 440e5c89e4eSSatish Balay 44153acd3b1SBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-options_gui",&PetscOptionsPublish);CHKERRQ(ierr); 442e5c89e4eSSatish Balay 443e5c89e4eSSatish Balay /* 444e5c89e4eSSatish Balay Print basic help message 445e5c89e4eSSatish Balay */ 446e5c89e4eSSatish Balay ierr = PetscOptionsHasName(PETSC_NULL,"-help",&flg1);CHKERRQ(ierr); 447e5c89e4eSSatish Balay if (flg1) { 448e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"Options for all PETSc programs:\n");CHKERRQ(ierr); 449e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -on_error_abort: cause an abort when an error is");CHKERRQ(ierr); 450e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," detected. Useful \n only when run in the debugger\n");CHKERRQ(ierr); 451e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -on_error_attach_debugger [gdb,dbx,xxgdb,ups,noxterm]\n");CHKERRQ(ierr); 452e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," start the debugger in new xterm\n");CHKERRQ(ierr); 453e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," unless noxterm is given\n");CHKERRQ(ierr); 454e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -start_in_debugger [gdb,dbx,xxgdb,ups,noxterm]\n");CHKERRQ(ierr); 455e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," start all processes in the debugger\n");CHKERRQ(ierr); 456e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -on_error_emacs <machinename>\n");CHKERRQ(ierr); 457e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," emacs jumps to error file\n");CHKERRQ(ierr); 458e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -debugger_nodes [n1,n2,..] Nodes to start in debugger\n");CHKERRQ(ierr); 459e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -debugger_pause [m] : delay (in seconds) to attach debugger\n");CHKERRQ(ierr); 460e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -stop_for_debugger : prints message on how to attach debugger manually\n");CHKERRQ(ierr); 461e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," waits the delay for you to attach\n");CHKERRQ(ierr); 462e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -display display: Location where graphics and debuggers are displayed\n");CHKERRQ(ierr); 463e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -no_signal_handler: do not trap error signals\n");CHKERRQ(ierr); 464e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mpi_return_on_error: MPI returns error code, rather than abort on internal error\n");CHKERRQ(ierr); 465e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -fp_trap: stop on floating point exceptions\n");CHKERRQ(ierr); 466e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," note on IBM RS6000 this slows run greatly\n");CHKERRQ(ierr); 467e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -malloc_dump <optional filename>: dump list of unfreed memory at conclusion\n");CHKERRQ(ierr); 468e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -malloc: use our error checking malloc\n");CHKERRQ(ierr); 469e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -malloc no: don't use error checking malloc\n");CHKERRQ(ierr); 470e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -mallocinfo: prints total memory usage\n");CHKERRQ(ierr); 471e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -malloc_debug: enables extended checking for memory corruption\n");CHKERRQ(ierr); 472e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -options_table: dump list of options inputted\n");CHKERRQ(ierr); 473e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -options_left: dump list of unused options\n");CHKERRQ(ierr); 474e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -options_left no: don't dump list of unused options\n");CHKERRQ(ierr); 475e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -tmp tmpdir: alternative /tmp directory\n");CHKERRQ(ierr); 476e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -shared_tmp: tmp directory is shared by all processors\n");CHKERRQ(ierr); 477a8c7a070SBarry Smith ierr = (*PetscHelpPrintf)(comm," -not_shared_tmp: each processor has separate tmp directory\n");CHKERRQ(ierr); 478e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -memory_info: print memory usage at end of run\n");CHKERRQ(ierr); 479e5c89e4eSSatish Balay #if defined(PETSC_USE_LOG) 480e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -get_total_flops: total flops over all processors\n");CHKERRQ(ierr); 481e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -log[_all _summary]: logging objects and events\n");CHKERRQ(ierr); 482e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -log_trace [filename]: prints trace of all PETSc calls\n");CHKERRQ(ierr); 483e5c89e4eSSatish Balay #if defined(PETSC_HAVE_MPE) 484e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -log_mpe: Also create logfile viewable through upshot\n");CHKERRQ(ierr); 485e5c89e4eSSatish Balay #endif 486*6cf91177SBarry Smith ierr = (*PetscHelpPrintf)(comm," -info <optional filename>: print informative messages about the calculations\n");CHKERRQ(ierr); 487e5c89e4eSSatish Balay #endif 488e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -v: prints PETSc version number and release date\n");CHKERRQ(ierr); 489e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -options_file <file>: reads options from file\n");CHKERRQ(ierr); 490e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm," -petsc_sleep n: sleeps n seconds before running program\n");CHKERRQ(ierr); 491e5c89e4eSSatish Balay ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr); 492e5c89e4eSSatish Balay } 493e5c89e4eSSatish Balay 494e5c89e4eSSatish Balay ierr = PetscOptionsGetInt(PETSC_NULL,"-petsc_sleep",&si,&flg1);CHKERRQ(ierr); 495e5c89e4eSSatish Balay if (flg1) { 496e5c89e4eSSatish Balay ierr = PetscSleep(si);CHKERRQ(ierr); 497e5c89e4eSSatish Balay } 498e5c89e4eSSatish Balay 499*6cf91177SBarry Smith ierr = PetscOptionsGetString(PETSC_NULL,"-info_exclude",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 500e5c89e4eSSatish Balay ierr = PetscStrstr(mname,"null",&f);CHKERRQ(ierr); 501e5c89e4eSSatish Balay if (f) { 502*6cf91177SBarry Smith ierr = PetscInfoDeactivateClass(PETSC_NULL);CHKERRQ(ierr); 503e5c89e4eSSatish Balay } 504e5c89e4eSSatish Balay 505e5c89e4eSSatish Balay PetscFunctionReturn(0); 506e5c89e4eSSatish Balay } 507e5c89e4eSSatish Balay 508e5c89e4eSSatish Balay 509