xref: /petsc/src/sys/objects/pinit.c (revision 49abdd8a111d9c2ef7fc48ade253ef64e07f9b37)
1bc8a24ecSBarry Smith #define PETSC_DESIRE_FEATURE_TEST_MACROS
2e5c89e4eSSatish Balay /*
3e5c89e4eSSatish Balay    This file defines the initialization of PETSc, including PetscInitialize()
4e5c89e4eSSatish Balay */
5af0996ceSBarry Smith #include <petsc/private/petscimpl.h> /*I  "petscsys.h"   I*/
6473903fcSJunchao Zhang #include <petsc/private/logimpl.h>
7665c2dedSJed Brown #include <petscviewer.h>
862e5d2d2SJDBetteridge #include <petsc/private/garbagecollector.h>
9a0e72f99SJunchao Zhang 
106edef35eSSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
116edef35eSSatish Balay   #include <petsc/private/valgrind/valgrind.h>
126edef35eSSatish Balay #endif
136edef35eSSatish Balay 
14fbf9dbe5SBarry Smith #if defined(PETSC_USE_FORTRAN_BINDINGS)
1585649d77SJunchao Zhang   #include <petsc/private/fortranimpl.h>
1685649d77SJunchao Zhang #endif
1785649d77SJunchao Zhang 
187ce81a4bSJacob Faibussowitsch #if PetscDefined(USE_COVERAGE)
1956883f60SBarry Smith EXTERN_C_BEGIN
20aaf3846cSSatish Balay   #if defined(PETSC_HAVE___GCOV_DUMP)
21aaf3846cSSatish Balay     #define __gcov_flush(x) __gcov_dump(x)
22aaf3846cSSatish Balay   #endif
2356883f60SBarry Smith void __gcov_flush(void);
2456883f60SBarry Smith EXTERN_C_END
2556883f60SBarry Smith #endif
268101f56cSMatthew Knepley 
272d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS)
2895c0884eSLisandro Dalcin PETSC_INTERN PetscFPT PetscFPTData;
292d53ad75SBarry Smith PetscFPT              PetscFPTData = 0;
302d53ad75SBarry Smith #endif
312d53ad75SBarry Smith 
3227104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_SAWS)
3316ad0300SBarry Smith   #include <petscviewersaws.h>
34a6790183SBarry Smith #endif
35eb02082bSJunchao Zhang 
3695c0884eSLisandro Dalcin PETSC_INTERN FILE *petsc_history;
37e5c89e4eSSatish Balay 
3895c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void);
3995c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void);
4095c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm, int);
4195c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm, int);
4295c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE **);
430069ddf5SShri Abhyankar 
446de5d289SStefano Zampini /* user may set these BEFORE calling PetscInitialize() */
45e8373e55SMatthew Knepley MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL;
4627104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_MPI_INIT_THREAD)
47835d5ba2SJunchao Zhang PetscMPIInt PETSC_MPI_THREAD_REQUIRED = PETSC_DECIDE;
486de5d289SStefano Zampini #else
49835d5ba2SJunchao Zhang PetscMPIInt PETSC_MPI_THREAD_REQUIRED = MPI_THREAD_SINGLE;
506de5d289SStefano Zampini #endif
51e5c89e4eSSatish Balay 
52480cf27aSJed Brown PetscMPIInt Petsc_Counter_keyval      = MPI_KEYVAL_INVALID;
53480cf27aSJed Brown PetscMPIInt Petsc_InnerComm_keyval    = MPI_KEYVAL_INVALID;
54480cf27aSJed Brown PetscMPIInt Petsc_OuterComm_keyval    = MPI_KEYVAL_INVALID;
555f7487a0SJunchao Zhang PetscMPIInt Petsc_ShmComm_keyval      = MPI_KEYVAL_INVALID;
5662e5d2d2SJDBetteridge PetscMPIInt Petsc_CreationIdx_keyval  = MPI_KEYVAL_INVALID;
5762e5d2d2SJDBetteridge PetscMPIInt Petsc_Garbage_HMap_keyval = MPI_KEYVAL_INVALID;
58480cf27aSJed Brown 
595ea2b939SDuncan Campbell PetscMPIInt Petsc_SharedWD_keyval  = MPI_KEYVAL_INVALID;
605ea2b939SDuncan Campbell PetscMPIInt Petsc_SharedTmp_keyval = MPI_KEYVAL_INVALID;
615ea2b939SDuncan Campbell 
62e5c89e4eSSatish Balay /*
63e5c89e4eSSatish Balay      Declare and set all the string names of the PETSc enums
64e5c89e4eSSatish Balay */
6502c9f0b5SLisandro Dalcin const char *const PetscBools[]     = {"FALSE", "TRUE", "PetscBool", "PETSC_", NULL};
6602c9f0b5SLisandro Dalcin const char *const PetscCopyModes[] = {"COPY_VALUES", "OWN_POINTER", "USE_POINTER", "PetscCopyMode", "PETSC_", NULL};
67e5c89e4eSSatish Balay 
68ace3abfcSBarry Smith PetscBool PetscPreLoadingUsed = PETSC_FALSE;
69ace3abfcSBarry Smith PetscBool PetscPreLoadingOn   = PETSC_FALSE;
700f8e0872SSatish Balay 
71a2f94806SJed Brown PetscInt PetscHotRegionDepth;
72a2f94806SJed Brown 
736edef35eSSatish Balay PetscBool PETSC_RUNNING_ON_VALGRIND = PETSC_FALSE;
746edef35eSSatish Balay 
75b22622e2STadeu Manoel #if defined(PETSC_HAVE_THREADSAFETY)
76b22622e2STadeu Manoel PetscSpinlock PetscViewerASCIISpinLockOpen;
77b22622e2STadeu Manoel PetscSpinlock PetscViewerASCIISpinLockStdout;
78b22622e2STadeu Manoel PetscSpinlock PetscViewerASCIISpinLockStderr;
79b22622e2STadeu Manoel PetscSpinlock PetscCommSpinLock;
80b22622e2STadeu Manoel #endif
81b22622e2STadeu Manoel 
82046ed546SBarry Smith extern PetscInt PetscNumBLASThreads;
83046ed546SBarry Smith 
84aec76313SJacob Faibussowitsch /*@C
85945d1669SBarry Smith   PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args
8672a42c3cSBarry Smith 
87cc4c1da9SBarry Smith   Collective, No Fortran Support
8872a42c3cSBarry Smith 
8910450e9eSJacob Faibussowitsch   Input Parameters:
9010450e9eSJacob Faibussowitsch + argc     - number of args
9110450e9eSJacob Faibussowitsch . args     - array of command line arguments
9210450e9eSJacob Faibussowitsch . filename - optional name of the program file, pass `NULL` to ignore
9310450e9eSJacob Faibussowitsch - help     - optional help, pass `NULL` to ignore
9410450e9eSJacob Faibussowitsch 
9572a42c3cSBarry Smith   Level: advanced
9672a42c3cSBarry Smith 
9795452b02SPatrick Sanan   Notes:
98a56f64adSBarry Smith   this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to
99a3b724e8SBarry Smith   indicate that it did NOT start MPI so that the `PetscFinalize()` does not end MPI, thus allowing `PetscInitialize()` to
100a56f64adSBarry Smith   be called multiple times from Julia without the problem of trying to initialize MPI more than once.
1010f11a792SBarry Smith 
10210450e9eSJacob Faibussowitsch   Developer Notes:
10310450e9eSJacob Faibussowitsch   Turns off PETSc signal handling to allow Julia to manage signals
1041ea5a559SBarry Smith 
105db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeFortran()`, `PetscInitializeNoArguments()`
1060f11a792SBarry Smith */
107d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitializeNoPointers(int argc, char **args, const char *filename, const char *help)
108d71ae5a4SJacob Faibussowitsch {
10972a42c3cSBarry Smith   int    myargc = argc;
11072a42c3cSBarry Smith   char **myargs = args;
11172a42c3cSBarry Smith 
11272a42c3cSBarry Smith   PetscFunctionBegin;
1139566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&myargc, &myargs, filename, help));
1149566063dSJacob Faibussowitsch   PetscCall(PetscPopSignalHandler());
115df413903SBarry Smith   PetscBeganMPI = PETSC_FALSE;
1163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11772a42c3cSBarry Smith }
11872a42c3cSBarry Smith 
119e5c89e4eSSatish Balay /*@C
120811af0c4SBarry Smith   PetscInitializeNoArguments - Calls `PetscInitialize()` from C/C++ without
121e5c89e4eSSatish Balay   the command line arguments.
122e5c89e4eSSatish Balay 
123e5c89e4eSSatish Balay   Collective
124e5c89e4eSSatish Balay 
125e5c89e4eSSatish Balay   Level: advanced
126e5c89e4eSSatish Balay 
127db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeFortran()`
128e5c89e4eSSatish Balay @*/
129d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitializeNoArguments(void)
130d71ae5a4SJacob Faibussowitsch {
131e5c89e4eSSatish Balay   int    argc = 0;
13202c9f0b5SLisandro Dalcin   char **args = NULL;
133e5c89e4eSSatish Balay 
134e5c89e4eSSatish Balay   PetscFunctionBegin;
1359566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc, &args, NULL, NULL));
1363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
137e5c89e4eSSatish Balay }
138e5c89e4eSSatish Balay 
139e5c89e4eSSatish Balay /*@
140e5c89e4eSSatish Balay   PetscInitialized - Determine whether PETSc is initialized.
141e5c89e4eSSatish Balay 
14210450e9eSJacob Faibussowitsch   Output Parameter:
14310450e9eSJacob Faibussowitsch . isInitialized - `PETSC_TRUE` if PETSc is initialized, `PETSC_FALSE` otherwise
14410450e9eSJacob Faibussowitsch 
14593b6d2d1SJed Brown   Level: beginner
146e5c89e4eSSatish Balay 
147db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeNoArguments()`, `PetscInitializeFortran()`
148e5c89e4eSSatish Balay @*/
149d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitialized(PetscBool *isInitialized)
150d71ae5a4SJacob Faibussowitsch {
15127104ee2SJacob Faibussowitsch   PetscFunctionBegin;
1524f572ea9SToby Isaac   if (PetscInitializeCalled) PetscAssertPointer(isInitialized, 1);
153e5c89e4eSSatish Balay   *isInitialized = PetscInitializeCalled;
1543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
155e5c89e4eSSatish Balay }
156e5c89e4eSSatish Balay 
157e5c89e4eSSatish Balay /*@
158811af0c4SBarry Smith   PetscFinalized - Determine whether `PetscFinalize()` has been called yet
159e5c89e4eSSatish Balay 
16010450e9eSJacob Faibussowitsch   Output Parameter:
16110450e9eSJacob Faibussowitsch . isFinalized - `PETSC_TRUE` if PETSc is finalized, `PETSC_FALSE` otherwise
16210450e9eSJacob Faibussowitsch 
163e5c89e4eSSatish Balay   Level: developer
164e5c89e4eSSatish Balay 
165db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeNoArguments()`, `PetscInitializeFortran()`
166e5c89e4eSSatish Balay @*/
167d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFinalized(PetscBool *isFinalized)
168d71ae5a4SJacob Faibussowitsch {
16927104ee2SJacob Faibussowitsch   PetscFunctionBegin;
1704f572ea9SToby Isaac   if (!PetscFinalizeCalled) PetscAssertPointer(isFinalized, 1);
171e5c89e4eSSatish Balay   *isFinalized = PetscFinalizeCalled;
1723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
173e5c89e4eSSatish Balay }
174e5c89e4eSSatish Balay 
17557171095SVaclav Hapla PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(const char[]);
176e5c89e4eSSatish Balay 
177e5c89e4eSSatish Balay /*
178e5c89e4eSSatish Balay        This function is the MPI reduction operation used to compute the sum of the
179e5c89e4eSSatish Balay    first half of the datatype and the max of the second half.
180e5c89e4eSSatish Balay */
181367daffbSBarry Smith MPI_Op MPIU_MAXSUM_OP               = 0;
18262e5d2d2SJDBetteridge MPI_Op Petsc_Garbage_SetIntersectOp = 0;
183e5c89e4eSSatish Balay 
1846497c311SBarry Smith PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype)
185d71ae5a4SJacob Faibussowitsch {
186e5c89e4eSSatish Balay   PetscFunctionBegin;
1876497c311SBarry Smith   if (*datatype == MPIU_INT_MPIINT && PetscDefined(USE_64BIT_INDICES)) {
1886497c311SBarry Smith #if defined(PETSC_USE_64BIT_INDICES)
1896497c311SBarry Smith     struct petsc_mpiu_int_mpiint *xin = (struct petsc_mpiu_int_mpiint *)in, *xout = (struct petsc_mpiu_int_mpiint *)out;
1906497c311SBarry Smith     PetscMPIInt                   count = *cnt;
191e5c89e4eSSatish Balay 
1926497c311SBarry Smith     for (PetscMPIInt i = 0; i < count; i++) {
1936497c311SBarry Smith       xout[i].a = PetscMax(xout[i].a, xin[i].a);
1946497c311SBarry Smith       xout[i].b += xin[i].b;
1956497c311SBarry Smith     }
1966497c311SBarry Smith #endif
1976497c311SBarry Smith   } else if (*datatype == MPIU_2INT || *datatype == MPIU_INT_MPIINT) {
1986497c311SBarry Smith     PetscInt   *xin = (PetscInt *)in, *xout = (PetscInt *)out;
1996497c311SBarry Smith     PetscMPIInt count = *cnt;
2006497c311SBarry Smith 
2016497c311SBarry Smith     for (PetscMPIInt i = 0; i < count; i++) {
202e5c89e4eSSatish Balay       xout[2 * i] = PetscMax(xout[2 * i], xin[2 * i]);
203e5c89e4eSSatish Balay       xout[2 * i + 1] += xin[2 * i + 1];
204e5c89e4eSSatish Balay     }
2056497c311SBarry Smith   } else {
2066497c311SBarry Smith     PetscErrorCode ierr = (*PetscErrorPrintf)("Can only handle MPIU_2INT and MPIU_INT_MPIINT data types");
2076497c311SBarry Smith     (void)ierr;
2086497c311SBarry Smith     PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG);
2096497c311SBarry Smith   }
210812af9f3SBarry Smith   PetscFunctionReturnVoid();
211e5c89e4eSSatish Balay }
212e5c89e4eSSatish Balay 
2136497c311SBarry Smith /*@
2146497c311SBarry Smith   PetscMaxSum - Returns the max of the first entry over all MPI processes and the sum of the second entry.
215b693b147SBarry Smith 
2166497c311SBarry Smith   Collective
2176497c311SBarry Smith 
2186497c311SBarry Smith   Input Parameters:
2196497c311SBarry Smith + comm  - the communicator
2206497c311SBarry Smith - array - an arry of length 2 times `size`, the number of MPI processes
2216497c311SBarry Smith 
2226497c311SBarry Smith   Output Parameters:
2236497c311SBarry Smith + max - the maximum of `array[2*rank]` over all MPI processes
2246497c311SBarry Smith - sum - the sum of the `array[2*rank + 1]` over all MPI processes
2256497c311SBarry Smith 
2266497c311SBarry Smith   Level: developer
2276497c311SBarry Smith 
2286497c311SBarry Smith .seealso: `PetscInitialize()`
2296497c311SBarry Smith @*/
2306497c311SBarry Smith PetscErrorCode PetscMaxSum(MPI_Comm comm, const PetscInt array[], PetscInt *max, PetscInt *sum)
231d71ae5a4SJacob Faibussowitsch {
232e5c89e4eSSatish Balay   PetscFunctionBegin;
233d6e4c47cSJed Brown #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK)
234d6e4c47cSJed Brown   {
2359371c9d4SSatish Balay     struct {
2369371c9d4SSatish Balay       PetscInt max, sum;
2379371c9d4SSatish Balay     } work;
2386497c311SBarry Smith     PetscCallMPI(MPI_Reduce_scatter_block((void *)array, &work, 1, MPIU_2INT, MPIU_MAXSUM_OP, comm));
239d6e4c47cSJed Brown     *max = work.max;
240d6e4c47cSJed Brown     *sum = work.sum;
241d6e4c47cSJed Brown   }
242d6e4c47cSJed Brown #else
243d6e4c47cSJed Brown   {
244d6e4c47cSJed Brown     PetscMPIInt size, rank;
2459371c9d4SSatish Balay     struct {
2469371c9d4SSatish Balay       PetscInt max, sum;
2479371c9d4SSatish Balay     } *work;
2489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
2499566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
2509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(size, &work));
251462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce((void *)array, work, size, MPIU_2INT, MPIU_MAXSUM_OP, comm));
2526ac3741eSJed Brown     *max = work[rank].max;
2536ac3741eSJed Brown     *sum = work[rank].sum;
2549566063dSJacob Faibussowitsch     PetscCall(PetscFree(work));
255d6e4c47cSJed Brown   }
256d6e4c47cSJed Brown #endif
2573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
258e5c89e4eSSatish Balay }
259e5c89e4eSSatish Balay 
260ef384fdeSPierre Jolivet #if (defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)) || (defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16))
261ef384fdeSPierre Jolivet   #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)
262613bf2b2SPierre Jolivet     #include <quadmath.h>
263613bf2b2SPierre Jolivet   #endif
2649e517322SPierre Jolivet MPI_Op MPIU_SUM___FP16___FLOAT128 = 0;
265de272c7aSSatish Balay   #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16)
26606a205a8SBarry Smith MPI_Op MPIU_SUM = 0;
267613bf2b2SPierre Jolivet   #endif
268e5c89e4eSSatish Balay 
269d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void MPIAPI PetscSum_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype)
270d71ae5a4SJacob Faibussowitsch {
2716497c311SBarry Smith   PetscMPIInt i, count = *cnt;
272e5c89e4eSSatish Balay 
273e5c89e4eSSatish Balay   PetscFunctionBegin;
2747c2de775SJed Brown   if (*datatype == MPIU_REAL) {
275e2e03761SBarry Smith     PetscReal *xin = (PetscReal *)in, *xout = (PetscReal *)out;
276a297a907SKarl Rupp     for (i = 0; i < count; i++) xout[i] += xin[i];
2777c2de775SJed Brown   }
2787c2de775SJed Brown   #if defined(PETSC_HAVE_COMPLEX)
279c5481aeeSJose E. Roman   else if (*datatype == MPIU_COMPLEX) {
2807c2de775SJed Brown     PetscComplex *xin = (PetscComplex *)in, *xout = (PetscComplex *)out;
281a297a907SKarl Rupp     for (i = 0; i < count; i++) xout[i] += xin[i];
2827c2de775SJed Brown   }
2837c2de775SJed Brown   #endif
284ef384fdeSPierre Jolivet   #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)
285613bf2b2SPierre Jolivet   else if (*datatype == MPIU___FLOAT128) {
286613bf2b2SPierre Jolivet     __float128 *xin = (__float128 *)in, *xout = (__float128 *)out;
287613bf2b2SPierre Jolivet     for (i = 0; i < count; i++) xout[i] += xin[i];
28874c01ffaSSatish Balay     #if defined(PETSC_HAVE_COMPLEX)
2899371c9d4SSatish Balay   } else if (*datatype == MPIU___COMPLEX128) {
290613bf2b2SPierre Jolivet     __complex128 *xin = (__complex128 *)in, *xout = (__complex128 *)out;
291613bf2b2SPierre Jolivet     for (i = 0; i < count; i++) xout[i] += xin[i];
29274c01ffaSSatish Balay     #endif
293613bf2b2SPierre Jolivet   }
294613bf2b2SPierre Jolivet   #endif
295ef384fdeSPierre Jolivet   #if defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16)
2969e517322SPierre Jolivet   else if (*datatype == MPIU___FP16) {
2979e517322SPierre Jolivet     __fp16 *xin = (__fp16 *)in, *xout = (__fp16 *)out;
2986497c311SBarry Smith     for (i = 0; i < count; i++) xout[i] = (__fp16)(xin[i] + xout[i]);
2999e517322SPierre Jolivet   }
3009e517322SPierre Jolivet   #endif
3017c2de775SJed Brown   else {
302ef384fdeSPierre Jolivet   #if (!defined(PETSC_HAVE_REAL___FLOAT128) || defined(PETSC_SKIP_REAL___FLOAT128)) && (!defined(PETSC_HAVE_REAL___FP16) || defined(PETSC_SKIP_REAL___FP16))
303ef384fdeSPierre Jolivet     PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"));
304ef384fdeSPierre Jolivet   #elif !defined(PETSC_HAVE_REAL___FP16) || defined(PETSC_SKIP_REAL___FP16)
3053ba16761SJacob Faibussowitsch     PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL, MPIU_COMPLEX, MPIU___FLOAT128, or MPIU___COMPLEX128 data types"));
306ef384fdeSPierre Jolivet   #elif !defined(PETSC_HAVE_REAL___FLOAT128) || defined(PETSC_SKIP_REAL___FLOAT128)
3073ba16761SJacob Faibussowitsch     PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL, MPIU_COMPLEX, or MPIU___FP16 data types"));
3089e517322SPierre Jolivet   #else
3093ba16761SJacob Faibussowitsch     PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL, MPIU_COMPLEX, MPIU___FLOAT128, MPIU___COMPLEX128, or MPIU___FP16 data types"));
310613bf2b2SPierre Jolivet   #endif
31141e02c4dSJunchao Zhang     PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG);
312e2e03761SBarry Smith   }
313812af9f3SBarry Smith   PetscFunctionReturnVoid();
314e5c89e4eSSatish Balay }
315e5c89e4eSSatish Balay #endif
316e5c89e4eSSatish Balay 
317570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16)
318d9822059SBarry Smith MPI_Op MPIU_MAX = 0;
319d9822059SBarry Smith MPI_Op MPIU_MIN = 0;
320d9822059SBarry Smith 
321d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void MPIAPI PetscMax_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype)
322d71ae5a4SJacob Faibussowitsch {
323d9822059SBarry Smith   PetscInt i, count = *cnt;
324d9822059SBarry Smith 
325d9822059SBarry Smith   PetscFunctionBegin;
3267c2de775SJed Brown   if (*datatype == MPIU_REAL) {
3278c764dc5SJose Roman     PetscReal *xin = (PetscReal *)in, *xout = (PetscReal *)out;
328a297a907SKarl Rupp     for (i = 0; i < count; i++) xout[i] = PetscMax(xout[i], xin[i]);
3297c2de775SJed Brown   }
3307c2de775SJed Brown   #if defined(PETSC_HAVE_COMPLEX)
3317c2de775SJed Brown   else if (*datatype == MPIU_COMPLEX) {
3327c2de775SJed Brown     PetscComplex *xin = (PetscComplex *)in, *xout = (PetscComplex *)out;
333ad540459SPierre Jolivet     for (i = 0; i < count; i++) xout[i] = PetscRealPartComplex(xout[i]) < PetscRealPartComplex(xin[i]) ? xin[i] : xout[i];
3347c2de775SJed Brown   }
3357c2de775SJed Brown   #endif
3367c2de775SJed Brown   else {
3373ba16761SJacob Faibussowitsch     PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"));
33841e02c4dSJunchao Zhang     PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG);
3398c764dc5SJose Roman   }
340d9822059SBarry Smith   PetscFunctionReturnVoid();
341d9822059SBarry Smith }
342d9822059SBarry Smith 
343d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void MPIAPI PetscMin_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype)
344d71ae5a4SJacob Faibussowitsch {
345d9822059SBarry Smith   PetscInt i, count = *cnt;
346d9822059SBarry Smith 
347d9822059SBarry Smith   PetscFunctionBegin;
3487c2de775SJed Brown   if (*datatype == MPIU_REAL) {
3498c764dc5SJose Roman     PetscReal *xin = (PetscReal *)in, *xout = (PetscReal *)out;
350a297a907SKarl Rupp     for (i = 0; i < count; i++) xout[i] = PetscMin(xout[i], xin[i]);
3517c2de775SJed Brown   }
3527c2de775SJed Brown   #if defined(PETSC_HAVE_COMPLEX)
3537c2de775SJed Brown   else if (*datatype == MPIU_COMPLEX) {
3547c2de775SJed Brown     PetscComplex *xin = (PetscComplex *)in, *xout = (PetscComplex *)out;
355ad540459SPierre Jolivet     for (i = 0; i < count; i++) xout[i] = PetscRealPartComplex(xout[i]) > PetscRealPartComplex(xin[i]) ? xin[i] : xout[i];
3567c2de775SJed Brown   }
3577c2de775SJed Brown   #endif
3587c2de775SJed Brown   else {
3593ba16761SJacob Faibussowitsch     PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"));
36041e02c4dSJunchao Zhang     PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG);
3618c764dc5SJose Roman   }
362d9822059SBarry Smith   PetscFunctionReturnVoid();
363d9822059SBarry Smith }
364d9822059SBarry Smith #endif
365d9822059SBarry Smith 
366480cf27aSJed Brown /*
367480cf27aSJed Brown    Private routine to delete internal tag/name counter storage when a communicator is freed.
368480cf27aSJed Brown 
369ff0e51ddSBarry Smith    This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this  data as an attribute is freed.
370480cf27aSJed Brown 
37112801b39SBarry Smith    Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval()
372480cf27aSJed Brown 
373480cf27aSJed Brown */
3748434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_Counter_Attr_DeleteFn(MPI_Comm comm, PetscMPIInt keyval, void *count_val, void *extra_state)
375d71ae5a4SJacob Faibussowitsch {
37605342407SJunchao Zhang   PetscCommCounter      *counter = (PetscCommCounter *)count_val;
37757f21012SBarry Smith   struct PetscCommStash *comms   = counter->comms, *pcomm;
378480cf27aSJed Brown 
379480cf27aSJed Brown   PetscFunctionBegin;
3807c5b2466SBarry Smith   PetscCallReturnMPI(PetscInfo(NULL, "Deleting counter data in an MPI_Comm %ld\n", (long)comm));
3817c5b2466SBarry Smith   PetscCallReturnMPI(PetscFree(counter->iflags));
38257f21012SBarry Smith   while (comms) {
3837c5b2466SBarry Smith     PetscCallMPIReturnMPI(MPI_Comm_free(&comms->comm));
38457f21012SBarry Smith     pcomm = comms;
38557f21012SBarry Smith     comms = comms->next;
3867c5b2466SBarry Smith     PetscCallReturnMPI(PetscFree(pcomm));
38757f21012SBarry Smith   }
3887c5b2466SBarry Smith   PetscCallReturnMPI(PetscFree(counter));
389480cf27aSJed Brown   PetscFunctionReturn(MPI_SUCCESS);
390480cf27aSJed Brown }
391480cf27aSJed Brown 
392480cf27aSJed Brown /*
39347435625SJed Brown   This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user
394da3039f7SJed Brown   calls MPI_Comm_free().
395da3039f7SJed Brown 
396da3039f7SJed Brown   This is the only entry point for breaking the links between inner and outer comms.
397480cf27aSJed Brown 
398ff0e51ddSBarry Smith   This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator.
399480cf27aSJed Brown 
40012801b39SBarry Smith   Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval()
401480cf27aSJed Brown 
402480cf27aSJed Brown */
4038434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_InnerComm_Attr_DeleteFn(MPI_Comm comm, PetscMPIInt keyval, void *attr_val, void *extra_state)
404d71ae5a4SJacob Faibussowitsch {
4059371c9d4SSatish Balay   union
406480cf27aSJed Brown   {
4079371c9d4SSatish Balay     MPI_Comm comm;
4089371c9d4SSatish Balay     void    *ptr;
4099371c9d4SSatish Balay   } icomm;
410480cf27aSJed Brown 
411480cf27aSJed Brown   PetscFunctionBegin;
4127c5b2466SBarry Smith   PetscCheckReturnMPI(keyval == Petsc_InnerComm_keyval, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Unexpected keyval");
413ec4fadc2SJed Brown   icomm.ptr = attr_val;
41476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
41533779a13SJunchao Zhang     /* Error out if the inner/outer comms are not correctly linked through their Outer/InnterComm attributes */
41633779a13SJunchao Zhang     PetscMPIInt flg;
4179371c9d4SSatish Balay     union
4189371c9d4SSatish Balay     {
4199371c9d4SSatish Balay       MPI_Comm comm;
4209371c9d4SSatish Balay       void    *ptr;
4219371c9d4SSatish Balay     } ocomm;
4227c5b2466SBarry Smith     PetscCallMPIReturnMPI(MPI_Comm_get_attr(icomm.comm, Petsc_OuterComm_keyval, &ocomm, &flg));
4237c5b2466SBarry Smith     PetscCheckReturnMPI(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Inner comm does not have OuterComm attribute");
4247c5b2466SBarry Smith     PetscCheckReturnMPI(ocomm.comm == comm, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Inner comm's OuterComm attribute does not point to outer PETSc comm");
42533779a13SJunchao Zhang   }
4267c5b2466SBarry Smith   PetscCallMPIReturnMPI(MPI_Comm_delete_attr(icomm.comm, Petsc_OuterComm_keyval));
4277c5b2466SBarry Smith   PetscCallReturnMPI(PetscInfo(NULL, "User MPI_Comm %ld is being unlinked from inner PETSc comm %ld\n", (long)comm, (long)icomm.comm));
428da3039f7SJed Brown   PetscFunctionReturn(MPI_SUCCESS);
429b89831e5SBarry Smith }
430da3039f7SJed Brown 
431da3039f7SJed Brown /*
4328434afd1SBarry Smith  * This is invoked on the inner comm when Petsc_InnerComm_Attr_DeleteFn calls MPI_Comm_delete_attr().  It should not be reached any other way.
433da3039f7SJed Brown  */
4348434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_OuterComm_Attr_DeleteFn(MPI_Comm comm, PetscMPIInt keyval, void *attr_val, void *extra_state)
435d71ae5a4SJacob Faibussowitsch {
436da3039f7SJed Brown   PetscFunctionBegin;
4377c5b2466SBarry Smith   PetscCallReturnMPI(PetscInfo(NULL, "Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n", (long)comm));
438480cf27aSJed Brown   PetscFunctionReturn(MPI_SUCCESS);
439480cf27aSJed Brown }
440480cf27aSJed Brown 
4418434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_ShmComm_Attr_DeleteFn(MPI_Comm, PetscMPIInt, void *, void *);
44242218b76SBarry Smith 
443951e3c8eSBarry Smith #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32)
4448cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype, MPI_Aint *, void *);
4458cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void *, MPI_Datatype, PetscMPIInt, void *, MPI_Offset, void *);
4468cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void *, MPI_Datatype, PetscMPIInt, void *, MPI_Offset, void *);
447e39fd77fSBarry Smith #endif
448e39fd77fSBarry Smith 
4490f9be574SPeter Hill PetscMPIInt PETSC_MPI_ERROR_CLASS = MPI_ERR_LASTCODE, PETSC_MPI_ERROR_CODE;
45012801b39SBarry Smith 
451eb27c7c8SSatish Balay PETSC_INTERN int    PetscGlobalArgc;
4529f0612e4SBarry Smith PETSC_INTERN char **PetscGlobalArgs, **PetscGlobalArgsFortran;
4536ae9a8a6SBarry Smith int                 PetscGlobalArgc        = 0;
45402c9f0b5SLisandro Dalcin char              **PetscGlobalArgs        = NULL;
4559f0612e4SBarry Smith char              **PetscGlobalArgsFortran = NULL;
456dff31646SBarry Smith PetscSegBuffer      PetscCitationsList;
457e5c89e4eSSatish Balay 
458d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscCitationsInitialize(void)
459d71ae5a4SJacob Faibussowitsch {
460051e4cf2SJed Brown   PetscFunctionBegin;
4619566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferCreate(1, 10000, &PetscCitationsList));
46230c35bf2SSatish Balay 
46330c35bf2SSatish Balay   PetscCall(PetscCitationsRegister("@TechReport{petsc-user-ref,\n\
46430c35bf2SSatish Balay   Author = {Satish Balay and Shrirang Abhyankar and Mark~F. Adams and Steven Benson and Jed Brown\n\
46530c35bf2SSatish Balay     and Peter Brune and Kris Buschelman and Emil Constantinescu and Lisandro Dalcin and Alp Dener\n\
4663f81df79SBarry Smith     and Victor Eijkhout and Jacob Faibussowitsch and William~D. Gropp and V\'{a}clav Hapla and Tobin Isaac and Pierre Jolivet\n\
46730c35bf2SSatish Balay     and Dmitry Karpeev and Dinesh Kaushik and Matthew~G. Knepley and Fande Kong and Scott Kruger\n\
46830c35bf2SSatish Balay     and Dave~A. May and Lois Curfman McInnes and Richard Tran Mills and Lawrence Mitchell and Todd Munson\n\
4699281ddf3SSatish Balay     and Jose~E. Roman and Karl Rupp and Patrick Sanan and Jason Sarich and Barry~F. Smith and Hansol Suh\n\
47030c35bf2SSatish Balay     and Stefano Zampini and Hong Zhang and Hong Zhang and Junchao Zhang},\n\
47130c35bf2SSatish Balay   Title = {{PETSc/TAO} Users Manual},\n\
4729281ddf3SSatish Balay   Number = {ANL-21/39 - Revision 3.22},\n\
473f5a9e7c7SSatish Balay   Doi = {10.2172/2205494},\n\
47430c35bf2SSatish Balay   Institution = {Argonne National Laboratory},\n\
47530694c2dSSatish Balay   Year = {2024}\n}\n",
4769371c9d4SSatish Balay                                    NULL));
47730c35bf2SSatish Balay 
47830c35bf2SSatish Balay   PetscCall(PetscCitationsRegister("@InProceedings{petsc-efficient,\n\
47930c35bf2SSatish Balay   Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n\
48030c35bf2SSatish Balay   Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n\
48130c35bf2SSatish Balay   Booktitle = {Modern Software Tools in Scientific Computing},\n\
48230c35bf2SSatish Balay   Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n\
48330c35bf2SSatish Balay   Pages = {163--202},\n\
48430c35bf2SSatish Balay   Publisher = {Birkh{\\\"{a}}user Press},\n\
4859371c9d4SSatish Balay   Year = {1997}\n}\n",
4869371c9d4SSatish Balay                                    NULL));
4873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
488051e4cf2SJed Brown }
489e5c89e4eSSatish Balay 
4902d747510SLisandro Dalcin static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */
4912d747510SLisandro Dalcin 
492d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSetProgramName(const char name[])
493d71ae5a4SJacob Faibussowitsch {
4942d747510SLisandro Dalcin   PetscFunctionBegin;
4959566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(programname, name, sizeof(programname)));
4963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4972d747510SLisandro Dalcin }
4982d747510SLisandro Dalcin 
4992d747510SLisandro Dalcin /*@C
5002d747510SLisandro Dalcin   PetscGetProgramName - Gets the name of the running program.
5012d747510SLisandro Dalcin 
5022d747510SLisandro Dalcin   Not Collective
5032d747510SLisandro Dalcin 
5042d747510SLisandro Dalcin   Input Parameter:
5052d747510SLisandro Dalcin . len - length of the string name
5062d747510SLisandro Dalcin 
5072d747510SLisandro Dalcin   Output Parameter:
508811af0c4SBarry Smith . name - the name of the running program, provide a string of length `PETSC_MAX_PATH_LEN`
5092d747510SLisandro Dalcin 
5102d747510SLisandro Dalcin   Level: advanced
5112d747510SLisandro Dalcin 
51221532e8aSBarry Smith .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArguments()`, `PetscInitialize()`
5132d747510SLisandro Dalcin @*/
514d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscGetProgramName(char name[], size_t len)
515d71ae5a4SJacob Faibussowitsch {
5162d747510SLisandro Dalcin   PetscFunctionBegin;
5179566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(name, programname, len));
5183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5192d747510SLisandro Dalcin }
5202d747510SLisandro Dalcin 
521e5c89e4eSSatish Balay /*@C
522e5c89e4eSSatish Balay   PetscGetArgs - Allows you to access the raw command line arguments anywhere
523811af0c4SBarry Smith   after PetscInitialize() is called but before `PetscFinalize()`.
524e5c89e4eSSatish Balay 
525cc4c1da9SBarry Smith   Not Collective, No Fortran Support
526e5c89e4eSSatish Balay 
527e5c89e4eSSatish Balay   Output Parameters:
528e5c89e4eSSatish Balay + argc - count of number of command line arguments
529e5c89e4eSSatish Balay - args - the command line arguments
530e5c89e4eSSatish Balay 
531e5c89e4eSSatish Balay   Level: intermediate
532e5c89e4eSSatish Balay 
533e5c89e4eSSatish Balay   Notes:
534e5c89e4eSSatish Balay   This is usually used to pass the command line arguments into other libraries
535e5c89e4eSSatish Balay   that are called internally deep in PETSc or the application.
536e5c89e4eSSatish Balay 
5379f0612e4SBarry Smith   The first argument contains the program name as is normal for C programs.
538f177e3b1SBarry Smith 
53921532e8aSBarry Smith .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArguments()`, `PetscInitialize()`
540e5c89e4eSSatish Balay @*/
541d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscGetArgs(int *argc, char ***args)
542d71ae5a4SJacob Faibussowitsch {
543e5c89e4eSSatish Balay   PetscFunctionBegin;
54439a651e2SJacob Faibussowitsch   PetscCheck(PetscInitializeCalled || !PetscFinalizeCalled, PETSC_COMM_SELF, PETSC_ERR_ORDER, "You must call after PetscInitialize() but before PetscFinalize()");
545e5c89e4eSSatish Balay   *argc = PetscGlobalArgc;
546e5c89e4eSSatish Balay   *args = PetscGlobalArgs;
5473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548e5c89e4eSSatish Balay }
549e5c89e4eSSatish Balay 
550793721a6SBarry Smith /*@C
551793721a6SBarry Smith   PetscGetArguments - Allows you to access the  command line arguments anywhere
552811af0c4SBarry Smith   after `PetscInitialize()` is called but before `PetscFinalize()`.
553793721a6SBarry Smith 
554cc4c1da9SBarry Smith   Not Collective, No Fortran Support
555793721a6SBarry Smith 
5562fe279fdSBarry Smith   Output Parameter:
557793721a6SBarry Smith . args - the command line arguments
558793721a6SBarry Smith 
559793721a6SBarry Smith   Level: intermediate
560793721a6SBarry Smith 
56121532e8aSBarry Smith   Note:
56221532e8aSBarry Smith   This does NOT start with the program name and IS `NULL` terminated (final arg is void)
563793721a6SBarry Smith 
56421532e8aSBarry Smith .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArgs()`, `PetscFreeArguments()`, `PetscInitialize()`
565793721a6SBarry Smith @*/
566d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscGetArguments(char ***args)
567d71ae5a4SJacob Faibussowitsch {
568793721a6SBarry Smith   PetscInt i, argc = PetscGlobalArgc;
569793721a6SBarry Smith 
570793721a6SBarry Smith   PetscFunctionBegin;
57139a651e2SJacob Faibussowitsch   PetscCheck(PetscInitializeCalled || !PetscFinalizeCalled, PETSC_COMM_SELF, PETSC_ERR_ORDER, "You must call after PetscInitialize() but before PetscFinalize()");
5729371c9d4SSatish Balay   if (!argc) {
5739371c9d4SSatish Balay     *args = NULL;
5743ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5759371c9d4SSatish Balay   }
5769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(argc, args));
5779566063dSJacob Faibussowitsch   for (i = 0; i < argc - 1; i++) PetscCall(PetscStrallocpy(PetscGlobalArgs[i + 1], &(*args)[i]));
5782d747510SLisandro Dalcin   (*args)[argc - 1] = NULL;
5793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580793721a6SBarry Smith }
581793721a6SBarry Smith 
582793721a6SBarry Smith /*@C
583811af0c4SBarry Smith   PetscFreeArguments - Frees the memory obtained with `PetscGetArguments()`
584793721a6SBarry Smith 
585cc4c1da9SBarry Smith   Not Collective, No Fortran Support
586793721a6SBarry Smith 
5872fe279fdSBarry Smith   Output Parameter:
588793721a6SBarry Smith . args - the command line arguments
589793721a6SBarry Smith 
590793721a6SBarry Smith   Level: intermediate
591793721a6SBarry Smith 
592db781477SPatrick Sanan .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArgs()`, `PetscGetArguments()`
593793721a6SBarry Smith @*/
594d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFreeArguments(char **args)
595d71ae5a4SJacob Faibussowitsch {
59639a651e2SJacob Faibussowitsch   PetscFunctionBegin;
59739a651e2SJacob Faibussowitsch   if (args) {
598793721a6SBarry Smith     PetscInt i = 0;
599793721a6SBarry Smith 
6009566063dSJacob Faibussowitsch     while (args[i]) PetscCall(PetscFree(args[i++]));
6019566063dSJacob Faibussowitsch     PetscCall(PetscFree(args));
60239a651e2SJacob Faibussowitsch   }
6033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
604793721a6SBarry Smith }
605793721a6SBarry Smith 
60627104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_SAWS)
60730befbd2SBarry Smith   #include <petscconfiginfo.h>
60830befbd2SBarry Smith 
609d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[])
610d71ae5a4SJacob Faibussowitsch {
61127104ee2SJacob Faibussowitsch   PetscFunctionBegin;
61211525c0dSBarry Smith   if (!PetscGlobalRank) {
61330befbd2SBarry Smith     char      cert[PETSC_MAX_PATH_LEN], root[PETSC_MAX_PATH_LEN], *intro, programname[64], *appline, *options, version[64];
61411525c0dSBarry Smith     int       port;
615ffbd1cfbSBarry Smith     PetscBool flg, rootlocal = PETSC_FALSE, flg2, selectport = PETSC_FALSE;
61611525c0dSBarry Smith     size_t    applinelen, introlen;
617ffbd1cfbSBarry Smith     char      sawsurl[256];
61811525c0dSBarry Smith 
6199566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(NULL, NULL, "-saws_log", &flg));
62011525c0dSBarry Smith     if (flg) {
62111525c0dSBarry Smith       char sawslog[PETSC_MAX_PATH_LEN];
62211525c0dSBarry Smith 
6239566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetString(NULL, NULL, "-saws_log", sawslog, sizeof(sawslog), NULL));
62411525c0dSBarry Smith       if (sawslog[0]) {
625792fecdfSBarry Smith         PetscCallSAWs(SAWs_Set_Use_Logfile, (sawslog));
62611525c0dSBarry Smith       } else {
627792fecdfSBarry Smith         PetscCallSAWs(SAWs_Set_Use_Logfile, (NULL));
62811525c0dSBarry Smith       }
62911525c0dSBarry Smith     }
6309566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-saws_https", cert, sizeof(cert), &flg));
63148a46eb9SPierre Jolivet     if (flg) PetscCallSAWs(SAWs_Set_Use_HTTPS, (cert));
6329566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetBool(NULL, NULL, "-saws_port_auto_select", &selectport, NULL));
633ffbd1cfbSBarry Smith     if (selectport) {
634792fecdfSBarry Smith       PetscCallSAWs(SAWs_Get_Available_Port, (&port));
635792fecdfSBarry Smith       PetscCallSAWs(SAWs_Set_Port, (port));
636ffbd1cfbSBarry Smith     } else {
6379566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL, NULL, "-saws_port", &port, &flg));
63848a46eb9SPierre Jolivet       if (flg) PetscCallSAWs(SAWs_Set_Port, (port));
639ffbd1cfbSBarry Smith     }
6409566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-saws_root", root, sizeof(root), &flg));
64111525c0dSBarry Smith     if (flg) {
642792fecdfSBarry Smith       PetscCallSAWs(SAWs_Set_Document_Root, (root));
6439566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(root, ".", &rootlocal));
6449c1e0ce8SBarry Smith     } else {
6459566063dSJacob Faibussowitsch       PetscCall(PetscOptionsHasName(NULL, NULL, "-saws_options", &flg));
6469c1e0ce8SBarry Smith       if (flg) {
6479566063dSJacob Faibussowitsch         PetscCall(PetscStrreplace(PETSC_COMM_WORLD, "${PETSC_DIR}/share/petsc/saws", root, sizeof(root)));
648792fecdfSBarry Smith         PetscCallSAWs(SAWs_Set_Document_Root, (root));
6499c1e0ce8SBarry Smith       }
65011525c0dSBarry Smith     }
6519566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(NULL, NULL, "-saws_local", &flg2));
65211525c0dSBarry Smith     if (flg2) {
65311525c0dSBarry Smith       char jsdir[PETSC_MAX_PATH_LEN];
65428b400f6SJacob Faibussowitsch       PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "-saws_local option requires -saws_root option");
6559566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(jsdir, sizeof(jsdir), "%s/js", root));
6569566063dSJacob Faibussowitsch       PetscCall(PetscTestDirectory(jsdir, 'r', &flg));
65728b400f6SJacob Faibussowitsch       PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_FILE_READ, "-saws_local option requires js directory in root directory");
658792fecdfSBarry Smith       PetscCallSAWs(SAWs_Push_Local_Header, ());
65911525c0dSBarry Smith     }
6609566063dSJacob Faibussowitsch     PetscCall(PetscGetProgramName(programname, sizeof(programname)));
6619566063dSJacob Faibussowitsch     PetscCall(PetscStrlen(help, &applinelen));
66211525c0dSBarry Smith     introlen = 4096 + applinelen;
66330a8c9c0SSurtai Han     applinelen += 1024;
6649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(applinelen, &appline));
6659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(introlen, &intro));
66611525c0dSBarry Smith 
66711525c0dSBarry Smith     if (rootlocal) {
6689566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(appline, applinelen, "%s.c.html", programname));
6699566063dSJacob Faibussowitsch       PetscCall(PetscTestFile(appline, 'r', &rootlocal));
67011525c0dSBarry Smith     }
6719566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetAll(NULL, &options));
67211525c0dSBarry Smith     if (rootlocal && help) {
6739566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(appline, applinelen, "<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n", programname, programname, options, help));
67411525c0dSBarry Smith     } else if (help) {
6759566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(appline, applinelen, "<center>Running %s %s</center><br><center><pre>%s</pre></center><br>", programname, options, help));
67611525c0dSBarry Smith     } else {
6779566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(appline, applinelen, "<center> Running %s %s</center><br>\n", programname, options));
67811525c0dSBarry Smith     }
6799566063dSJacob Faibussowitsch     PetscCall(PetscFree(options));
6809566063dSJacob Faibussowitsch     PetscCall(PetscGetVersion(version, sizeof(version)));
6819371c9d4SSatish Balay     PetscCall(PetscSNPrintf(intro, introlen,
6829371c9d4SSatish Balay                             "<body>\n"
683a17b96a8SKyle Gerard Felker                             "<center><h2> <a href=\"https://petsc.org/\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n"
684df62c222SBarry Smith                             "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n"
6859371c9d4SSatish Balay                             "%s",
6869371c9d4SSatish Balay                             version, petscconfigureoptions, appline));
687792fecdfSBarry Smith     PetscCallSAWs(SAWs_Push_Body, ("index.html", 0, intro));
6889566063dSJacob Faibussowitsch     PetscCall(PetscFree(intro));
6899566063dSJacob Faibussowitsch     PetscCall(PetscFree(appline));
690ffbd1cfbSBarry Smith     if (selectport) {
691aa573868SBarry Smith       PetscBool silent;
6927d812c46SBarry Smith 
6937d812c46SBarry Smith       /* another process may have grabbed the port so keep trying */
69439a651e2SJacob Faibussowitsch       while (SAWs_Initialize()) {
695792fecdfSBarry Smith         PetscCallSAWs(SAWs_Get_Available_Port, (&port));
696792fecdfSBarry Smith         PetscCallSAWs(SAWs_Set_Port, (port));
6977d812c46SBarry Smith       }
6987d812c46SBarry Smith 
6999566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetBool(NULL, NULL, "-saws_port_auto_select_silent", &silent, NULL));
700aa573868SBarry Smith       if (!silent) {
701792fecdfSBarry Smith         PetscCallSAWs(SAWs_Get_FullURL, (sizeof(sawsurl), sawsurl));
7029566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Point your browser to %s for SAWs\n", sawsurl));
703ffbd1cfbSBarry Smith       }
7047d812c46SBarry Smith     } else {
705792fecdfSBarry Smith       PetscCallSAWs(SAWs_Initialize, ());
706aa573868SBarry Smith     }
7079566063dSJacob Faibussowitsch     PetscCall(PetscCitationsRegister("@TechReport{ saws,\n"
7080af79b04SBarry Smith                                      "  Author = {Matt Otten and Jed Brown and Barry Smith},\n"
7090af79b04SBarry Smith                                      "  Title  = {Scientific Application Web Server (SAWs) Users Manual},\n"
7100af79b04SBarry Smith                                      "  Institution = {Argonne National Laboratory},\n"
7119371c9d4SSatish Balay                                      "  Year   = 2013\n}\n",
7129371c9d4SSatish Balay                                      NULL));
71311525c0dSBarry Smith   }
7143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71511525c0dSBarry Smith }
71611525c0dSBarry Smith #endif
71711525c0dSBarry Smith 
7184dfee713SSatish Balay /* Things must be done before MPI_Init() when MPI is not yet initialized, and can be shared between C init and Fortran init */
719d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscPreMPIInit_Private(void)
720d71ae5a4SJacob Faibussowitsch {
7214dfee713SSatish Balay   PetscFunctionBegin;
7224dfee713SSatish Balay #if defined(PETSC_HAVE_HWLOC_SOLARIS_BUG)
7234dfee713SSatish Balay   /* see MPI.py for details on this bug */
7244dfee713SSatish Balay   (void)setenv("HWLOC_COMPONENTS", "-x86", 1);
7254dfee713SSatish Balay #endif
7263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7274dfee713SSatish Balay }
7284dfee713SSatish Balay 
729a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_ADIOS)
730a56f64adSBarry Smith   #include <adios.h>
73122580e64SBarry Smith   #include <adios_read.h>
7327b56e58cSSatish Balay int64_t Petsc_adios_group;
733a56f64adSBarry Smith #endif
734a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_OPENMP)
735cd1b99a6SBarry Smith   #include <omp.h>
736f90b075cSBarry Smith PetscInt PetscNumOMPThreads;
737cd1b99a6SBarry Smith #endif
738a56f64adSBarry Smith 
739a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h>
740a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_CUDA)
7410e6b6b59SJacob Faibussowitsch   #include <petscdevice_cuda.h>
742a4af0ceeSJacob Faibussowitsch // REMOVE ME
743a4af0ceeSJacob Faibussowitsch cudaStream_t PetscDefaultCudaStream = NULL;
744a4af0ceeSJacob Faibussowitsch #endif
745a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_HIP)
7460e6b6b59SJacob Faibussowitsch   #include <petscdevice_hip.h>
747a4af0ceeSJacob Faibussowitsch // REMOVE ME
748a4af0ceeSJacob Faibussowitsch hipStream_t PetscDefaultHipStream = NULL;
749a4af0ceeSJacob Faibussowitsch #endif
750a4af0ceeSJacob Faibussowitsch 
75127104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_DLFCN_H)
752bc8a24ecSBarry Smith   #include <dlfcn.h>
753bc8a24ecSBarry Smith #endif
754a4af0ceeSJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscLogInitialize(void);
755a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_VIENNACL)
7563274405dSPierre Jolivet PETSC_EXTERN PetscErrorCode PetscViennaCLInit(void);
757a4af0ceeSJacob Faibussowitsch PetscBool                   PetscViennaCLSynchronize = PETSC_FALSE;
758a4af0ceeSJacob Faibussowitsch #endif
759bc8a24ecSBarry Smith 
760660278c0SBarry Smith PetscBool PetscCIEnabled = PETSC_FALSE, PetscCIEnabledPortableErrorOutput = PETSC_FALSE;
761660278c0SBarry Smith 
76285649d77SJunchao Zhang /*
76385649d77SJunchao Zhang   PetscInitialize_Common  - shared code between C and Fortran initialization
76485649d77SJunchao Zhang 
76585649d77SJunchao Zhang   prog:     program name
76602101c96SSatish Balay   file:     optional PETSc database file name. Might be in Fortran string format when 'ftn' is true
76785649d77SJunchao Zhang   help:     program help message
768da81f932SPierre Jolivet   ftn:      is it called from Fortran initialization (petscinitializef_)?
76985649d77SJunchao Zhang   readarguments,len: used when fortran is true
77085649d77SJunchao Zhang */
771d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscInitialize_Common(const char *prog, const char *file, const char *help, PetscBool ftn, PetscBool readarguments, PetscInt len)
772d71ae5a4SJacob Faibussowitsch {
77385649d77SJunchao Zhang   PetscMPIInt size;
77485649d77SJunchao Zhang   PetscBool   flg = PETSC_TRUE;
77585649d77SJunchao Zhang   char        hostname[256];
776046ed546SBarry Smith   PetscBool   blas_view_flag = PETSC_FALSE;
77785649d77SJunchao Zhang 
77827104ee2SJacob Faibussowitsch   PetscFunctionBegin;
7793ba16761SJacob Faibussowitsch   if (PetscInitializeCalled) PetscFunctionReturn(PETSC_SUCCESS);
78039a651e2SJacob Faibussowitsch   /* these must be initialized in a routine, not as a constant declaration */
78139a651e2SJacob Faibussowitsch   PETSC_STDOUT = stdout;
78239a651e2SJacob Faibussowitsch   PETSC_STDERR = stderr;
78339a651e2SJacob Faibussowitsch 
7849566063dSJacob Faibussowitsch   /* PetscCall can be used from now */
78539a651e2SJacob Faibussowitsch   PetscErrorHandlingInitialized = PETSC_TRUE;
78639a651e2SJacob Faibussowitsch 
78785649d77SJunchao Zhang   /*
78885649d77SJunchao Zhang       The checking over compatible runtime libraries is complicated by the MPI ABI initiative
78985649d77SJunchao Zhang       https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with
79085649d77SJunchao Zhang         MPICH v3.1 (Released February 2014)
79185649d77SJunchao Zhang         IBM MPI v2.1 (December 2014)
79285649d77SJunchao Zhang         Intel MPI Library v5.0 (2014)
79385649d77SJunchao Zhang         Cray MPT v7.0.0 (June 2014)
79485649d77SJunchao Zhang       As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions
79585649d77SJunchao Zhang       listed above and since that time are compatible.
79685649d77SJunchao Zhang 
79785649d77SJunchao Zhang       Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number
79885649d77SJunchao Zhang       at compile time or runtime. Thus we will need to systematically track the allowed versions
79985649d77SJunchao Zhang       and how they are represented in the mpi.h and MPI_Get_library_version() output in order
80085649d77SJunchao Zhang       to perform the checking.
80185649d77SJunchao Zhang 
80285649d77SJunchao Zhang       Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI).
80385649d77SJunchao Zhang 
80485649d77SJunchao Zhang       Questions:
80585649d77SJunchao Zhang 
80685649d77SJunchao Zhang         Should the checks for ABI incompatibility be only on the major version number below?
80785649d77SJunchao Zhang         Presumably the output to stderr will be removed before a release.
80885649d77SJunchao Zhang   */
80985649d77SJunchao Zhang 
81085649d77SJunchao Zhang #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION)
81185649d77SJunchao Zhang   {
81285649d77SJunchao Zhang     char        mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING];
81385649d77SJunchao Zhang     PetscMPIInt mpilibraryversionlength;
81439a651e2SJacob Faibussowitsch 
8159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Get_library_version(mpilibraryversion, &mpilibraryversionlength));
81685649d77SJunchao Zhang     /* check for MPICH versions before MPI ABI initiative */
81785649d77SJunchao Zhang   #if defined(MPICH_VERSION)
81885649d77SJunchao Zhang     #if MPICH_NUMVERSION < 30100000
81985649d77SJunchao Zhang     {
82085649d77SJunchao Zhang       char     *ver, *lf;
82185649d77SJunchao Zhang       PetscBool flg = PETSC_FALSE;
82239a651e2SJacob Faibussowitsch 
8239566063dSJacob Faibussowitsch       PetscCall(PetscStrstr(mpilibraryversion, "MPICH Version:", &ver));
82439a651e2SJacob Faibussowitsch       if (ver) {
8259566063dSJacob Faibussowitsch         PetscCall(PetscStrchr(ver, '\n', &lf));
82639a651e2SJacob Faibussowitsch         if (lf) {
82785649d77SJunchao Zhang           *lf = 0;
8289566063dSJacob Faibussowitsch           PetscCall(PetscStrendswith(ver, MPICH_VERSION, &flg));
82985649d77SJunchao Zhang         }
83085649d77SJunchao Zhang       }
83185649d77SJunchao Zhang       if (!flg) {
832d5b396e8SSatish Balay         PetscCall(PetscInfo(NULL, "PETSc warning --- MPICH library version \n%s does not match what PETSc was compiled with %s.\n", mpilibraryversion, MPICH_VERSION));
83385649d77SJunchao Zhang         flg = PETSC_TRUE;
83485649d77SJunchao Zhang       }
83585649d77SJunchao Zhang     }
83685649d77SJunchao Zhang     #endif
83785649d77SJunchao Zhang       /* check for Open MPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */
838100ffedbSJunchao Zhang   #elif defined(PETSC_HAVE_OPENMPI)
83985649d77SJunchao Zhang     {
84085649d77SJunchao Zhang       char     *ver, bs[MPI_MAX_LIBRARY_VERSION_STRING], *bsf;
84185649d77SJunchao Zhang       PetscBool flg                                              = PETSC_FALSE;
84285649d77SJunchao Zhang     #define PSTRSZ 2
84385649d77SJunchao Zhang       char      ompistr1[PSTRSZ][MPI_MAX_LIBRARY_VERSION_STRING] = {"Open MPI", "FUJITSU MPI"};
84485649d77SJunchao Zhang       char      ompistr2[PSTRSZ][MPI_MAX_LIBRARY_VERSION_STRING] = {"v", "Library "};
84585649d77SJunchao Zhang       int       i;
84685649d77SJunchao Zhang       for (i = 0; i < PSTRSZ; i++) {
8479566063dSJacob Faibussowitsch         PetscCall(PetscStrstr(mpilibraryversion, ompistr1[i], &ver));
84839a651e2SJacob Faibussowitsch         if (ver) {
849100ffedbSJunchao Zhang           PetscCall(PetscSNPrintf(bs, MPI_MAX_LIBRARY_VERSION_STRING, "%s%d.%d", ompistr2[i], PETSC_PKG_OPENMPI_VERSION_MAJOR, PETSC_PKG_OPENMPI_VERSION_MINOR));
8509566063dSJacob Faibussowitsch           PetscCall(PetscStrstr(ver, bs, &bsf));
85139a651e2SJacob Faibussowitsch           if (bsf) flg = PETSC_TRUE;
85285649d77SJunchao Zhang           break;
85385649d77SJunchao Zhang         }
85485649d77SJunchao Zhang       }
85585649d77SJunchao Zhang       if (!flg) {
856100ffedbSJunchao Zhang         PetscCall(PetscInfo(NULL, "PETSc warning --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d.\n", mpilibraryversion, PETSC_PKG_OPENMPI_VERSION_MAJOR, PETSC_PKG_OPENMPI_VERSION_MINOR));
85785649d77SJunchao Zhang         flg = PETSC_TRUE;
85885649d77SJunchao Zhang       }
85985649d77SJunchao Zhang     }
86085649d77SJunchao Zhang   #endif
86185649d77SJunchao Zhang   }
86285649d77SJunchao Zhang #endif
86385649d77SJunchao Zhang 
864e8953f01SSatish Balay #if defined(PETSC_HAVE_DLADDR) && !(defined(__cray__) && defined(__clang__))
86585649d77SJunchao Zhang   /* These symbols are currently in the Open MPI and MPICH libraries; they may not always be, in that case the test will simply not detect the problem */
86639a651e2SJacob Faibussowitsch   PetscCheck(!dlsym(RTLD_DEFAULT, "ompi_mpi_init") || !dlsym(RTLD_DEFAULT, "MPID_Abort"), PETSC_COMM_SELF, PETSC_ERR_MPI_LIB_INCOMP, "Application was linked against both Open MPI and MPICH based MPI libraries and will not run correctly");
86785649d77SJunchao Zhang #endif
86885649d77SJunchao Zhang 
86985649d77SJunchao Zhang   /* on Windows - set printf to default to printing 2 digit exponents */
87085649d77SJunchao Zhang #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT)
87185649d77SJunchao Zhang   _set_output_format(_TWO_DIGIT_EXPONENT);
87285649d77SJunchao Zhang #endif
87385649d77SJunchao Zhang 
8749566063dSJacob Faibussowitsch   PetscCall(PetscOptionsCreateDefault());
87585649d77SJunchao Zhang 
87685649d77SJunchao Zhang   PetscFinalizeCalled = PETSC_FALSE;
87785649d77SJunchao Zhang 
8789566063dSJacob Faibussowitsch   PetscCall(PetscSetProgramName(prog));
8799566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen));
8809566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout));
8819566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr));
8829566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockCreate(&PetscCommSpinLock));
88385649d77SJunchao Zhang 
88485649d77SJunchao Zhang   if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD;
8859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_set_errhandler(PETSC_COMM_WORLD, MPI_ERRORS_RETURN));
88685649d77SJunchao Zhang 
88785649d77SJunchao Zhang   if (PETSC_MPI_ERROR_CLASS == MPI_ERR_LASTCODE) {
8889566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS));
8899566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Add_error_code(PETSC_MPI_ERROR_CLASS, &PETSC_MPI_ERROR_CODE));
89085649d77SJunchao Zhang   }
89185649d77SJunchao Zhang 
89285649d77SJunchao Zhang   /* Done after init due to a bug in MPICH-GM? */
8939566063dSJacob Faibussowitsch   PetscCall(PetscErrorPrintfInitialize());
89485649d77SJunchao Zhang 
8959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &PetscGlobalRank));
8969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(MPI_COMM_WORLD, &PetscGlobalSize));
89785649d77SJunchao Zhang 
89885649d77SJunchao Zhang   MPIU_BOOL        = MPI_INT;
89985649d77SJunchao Zhang   MPIU_ENUM        = MPI_INT;
90085649d77SJunchao Zhang   MPIU_FORTRANADDR = (sizeof(void *) == sizeof(int)) ? MPI_INT : MPIU_INT64;
90185649d77SJunchao Zhang   if (sizeof(size_t) == sizeof(unsigned)) MPIU_SIZE_T = MPI_UNSIGNED;
90285649d77SJunchao Zhang   else if (sizeof(size_t) == sizeof(unsigned long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG;
90385649d77SJunchao Zhang #if defined(PETSC_SIZEOF_LONG_LONG)
90485649d77SJunchao Zhang   else if (sizeof(size_t) == sizeof(unsigned long long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG_LONG;
90585649d77SJunchao Zhang #endif
90639a651e2SJacob Faibussowitsch   else SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_SUP_SYS, "Could not find MPI type for size_t");
90785649d77SJunchao Zhang 
90885649d77SJunchao Zhang   /*
90985649d77SJunchao Zhang      Initialized the global complex variable; this is because with
91085649d77SJunchao Zhang      shared libraries the constructors for global variables
91185649d77SJunchao Zhang      are not called; at least on IRIX.
91285649d77SJunchao Zhang   */
91385649d77SJunchao Zhang #if defined(PETSC_HAVE_COMPLEX)
91485649d77SJunchao Zhang   {
91585649d77SJunchao Zhang   #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128)
91685649d77SJunchao Zhang     PetscComplex ic(0.0, 1.0);
91785649d77SJunchao Zhang     PETSC_i = ic;
91885649d77SJunchao Zhang   #else
91985649d77SJunchao Zhang     PETSC_i = _Complex_I;
92085649d77SJunchao Zhang   #endif
92185649d77SJunchao Zhang   }
92285649d77SJunchao Zhang #endif /* PETSC_HAVE_COMPLEX */
92385649d77SJunchao Zhang 
92485649d77SJunchao Zhang   /*
92585649d77SJunchao Zhang      Create the PETSc MPI reduction operator that sums of the first
92685649d77SJunchao Zhang      half of the entries and maxes the second half.
92785649d77SJunchao Zhang   */
9289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_create(MPIU_MaxSum_Local, 1, &MPIU_MAXSUM_OP));
92985649d77SJunchao Zhang 
930ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)
9319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(2, MPI_DOUBLE, &MPIU___FLOAT128));
9329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPIU___FLOAT128));
93374c01ffaSSatish Balay   #if defined(PETSC_HAVE_COMPLEX)
9349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(4, MPI_DOUBLE, &MPIU___COMPLEX128));
9359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPIU___COMPLEX128));
93685649d77SJunchao Zhang   #endif
93774c01ffaSSatish Balay #endif
938ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16)
9399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(2, MPI_CHAR, &MPIU___FP16));
9409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPIU___FP16));
94185649d77SJunchao Zhang #endif
94285649d77SJunchao Zhang 
94385649d77SJunchao Zhang #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16)
9449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_create(PetscSum_Local, 1, &MPIU_SUM));
945613bf2b2SPierre Jolivet   PetscCallMPI(MPI_Op_create(PetscMax_Local, 1, &MPIU_MAX));
946613bf2b2SPierre Jolivet   PetscCallMPI(MPI_Op_create(PetscMin_Local, 1, &MPIU_MIN));
947ef384fdeSPierre Jolivet #elif (defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)) || (defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16))
9489e517322SPierre Jolivet   PetscCallMPI(MPI_Op_create(PetscSum_Local, 1, &MPIU_SUM___FP16___FLOAT128));
94985649d77SJunchao Zhang #endif
95085649d77SJunchao Zhang 
9519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(2, MPIU_SCALAR, &MPIU_2SCALAR));
95262e5d2d2SJDBetteridge   PetscCallMPI(MPI_Op_create(PetscGarbageKeySortedIntersect, 1, &Petsc_Garbage_SetIntersectOp));
9539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPIU_2SCALAR));
95485649d77SJunchao Zhang 
95585649d77SJunchao Zhang   /* create datatypes used by MPIU_MAXLOC, MPIU_MINLOC and PetscSplitReduction_Op */
95685649d77SJunchao Zhang #if !defined(PETSC_HAVE_MPIUNI)
95785649d77SJunchao Zhang   {
95885649d77SJunchao Zhang     PetscMPIInt  blockSizes[2]   = {1, 1};
95993d501b3SJacob Faibussowitsch     MPI_Aint     blockOffsets[2] = {offsetof(struct petsc_mpiu_real_int, v), offsetof(struct petsc_mpiu_real_int, i)};
96085649d77SJunchao Zhang     MPI_Datatype blockTypes[2]   = {MPIU_REAL, MPIU_INT}, tmpStruct;
96185649d77SJunchao Zhang 
9629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_struct(2, blockSizes, blockOffsets, blockTypes, &tmpStruct));
96393d501b3SJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(tmpStruct, 0, sizeof(struct petsc_mpiu_real_int), &MPIU_REAL_INT));
9649566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&tmpStruct));
9659566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&MPIU_REAL_INT));
96685649d77SJunchao Zhang   }
96785649d77SJunchao Zhang   {
96885649d77SJunchao Zhang     PetscMPIInt  blockSizes[2]   = {1, 1};
96993d501b3SJacob Faibussowitsch     MPI_Aint     blockOffsets[2] = {offsetof(struct petsc_mpiu_scalar_int, v), offsetof(struct petsc_mpiu_scalar_int, i)};
97085649d77SJunchao Zhang     MPI_Datatype blockTypes[2]   = {MPIU_SCALAR, MPIU_INT}, tmpStruct;
97185649d77SJunchao Zhang 
9729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_struct(2, blockSizes, blockOffsets, blockTypes, &tmpStruct));
97393d501b3SJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(tmpStruct, 0, sizeof(struct petsc_mpiu_scalar_int), &MPIU_SCALAR_INT));
9749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&tmpStruct));
9759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&MPIU_SCALAR_INT));
97685649d77SJunchao Zhang   }
97785649d77SJunchao Zhang #endif
97885649d77SJunchao Zhang 
97985649d77SJunchao Zhang #if defined(PETSC_USE_64BIT_INDICES)
9809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(2, MPIU_INT, &MPIU_2INT));
9819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPIU_2INT));
9826497c311SBarry Smith 
9836497c311SBarry Smith   #if !defined(PETSC_HAVE_MPIUNI)
9846497c311SBarry Smith   {
9856497c311SBarry Smith     int          blockSizes[]   = {1, 1};
9866497c311SBarry Smith     MPI_Aint     blockOffsets[] = {offsetof(struct petsc_mpiu_int_mpiint, a), offsetof(struct petsc_mpiu_int_mpiint, b)};
9876497c311SBarry Smith     MPI_Datatype blockTypes[]   = {MPIU_INT, MPI_INT}, tmpStruct;
9886497c311SBarry Smith 
9896497c311SBarry Smith     PetscCallMPI(MPI_Type_create_struct(2, blockSizes, blockOffsets, blockTypes, &tmpStruct));
9906497c311SBarry Smith     PetscCallMPI(MPI_Type_create_resized(tmpStruct, 0, sizeof(struct petsc_mpiu_int_mpiint), &MPIU_INT_MPIINT));
9916497c311SBarry Smith     PetscCallMPI(MPI_Type_free(&tmpStruct));
9926497c311SBarry Smith     PetscCallMPI(MPI_Type_commit(&MPIU_INT_MPIINT));
9936497c311SBarry Smith   }
9946497c311SBarry Smith   #endif
99585649d77SJunchao Zhang #endif
9969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(4, MPI_INT, &MPI_4INT));
9979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPI_4INT));
9989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(4, MPIU_INT, &MPIU_4INT));
9999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&MPIU_4INT));
100085649d77SJunchao Zhang 
100185649d77SJunchao Zhang   /*
100285649d77SJunchao Zhang      Attributes to be set on PETSc communicators
100385649d77SJunchao Zhang   */
1004c8025a54SPierre Jolivet   PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_Counter_Attr_DeleteFn, &Petsc_Counter_keyval, NULL));
1005c8025a54SPierre Jolivet   PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_InnerComm_Attr_DeleteFn, &Petsc_InnerComm_keyval, NULL));
1006c8025a54SPierre Jolivet   PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_OuterComm_Attr_DeleteFn, &Petsc_OuterComm_keyval, NULL));
1007c8025a54SPierre Jolivet   PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_ShmComm_Attr_DeleteFn, &Petsc_ShmComm_keyval, NULL));
1008c8025a54SPierre Jolivet   PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_CreationIdx_keyval, NULL));
1009c8025a54SPierre Jolivet   PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Garbage_HMap_keyval, NULL));
101085649d77SJunchao Zhang 
1011fbf9dbe5SBarry Smith #if defined(PETSC_USE_FORTRAN_BINDINGS)
10129566063dSJacob Faibussowitsch   if (ftn) PetscCall(PetscInitFortran_Private(readarguments, file, len));
101385649d77SJunchao Zhang   else
101485649d77SJunchao Zhang #endif
10159566063dSJacob Faibussowitsch     PetscCall(PetscOptionsInsert(NULL, &PetscGlobalArgc, &PetscGlobalArgs, file));
101685649d77SJunchao Zhang 
1017983cdb30SBarry Smith   if (PetscDefined(HAVE_MPIUNI)) {
1018983cdb30SBarry Smith     const char *mpienv = getenv("PMI_SIZE");
1019983cdb30SBarry Smith     if (!mpienv) mpienv = getenv("OMPI_COMM_WORLD_SIZE");
1020983cdb30SBarry Smith     if (mpienv) {
1021983cdb30SBarry Smith       PetscInt  isize;
1022983cdb30SBarry Smith       PetscBool mflag = PETSC_FALSE;
1023983cdb30SBarry Smith 
1024983cdb30SBarry Smith       PetscCall(PetscOptionsStringToInt(mpienv, &isize));
1025983cdb30SBarry Smith       PetscCall(PetscOptionsGetBool(NULL, NULL, "-mpiuni-allow-multiprocess-launch", &mflag, NULL));
1026983cdb30SBarry Smith       PetscCheck(isize == 1 || mflag, MPI_COMM_SELF, PETSC_ERR_MPI, "You are using an MPI-uni (sequential) install of PETSc but trying to launch parallel jobs; you need full MPI version of PETSc. Or run with -mpiuni-allow-multiprocess-launch to allow multiple independent MPI-uni jobs.");
1027983cdb30SBarry Smith     }
1028983cdb30SBarry Smith   }
1029983cdb30SBarry Smith 
103085649d77SJunchao Zhang   /* call a second time so it can look in the options database */
10319566063dSJacob Faibussowitsch   PetscCall(PetscErrorPrintfInitialize());
103285649d77SJunchao Zhang 
103385649d77SJunchao Zhang   /*
103485649d77SJunchao Zhang      Check system options and print help
103585649d77SJunchao Zhang   */
10369566063dSJacob Faibussowitsch   PetscCall(PetscOptionsCheckInitial_Private(help));
103785649d77SJunchao Zhang 
1038a4af0ceeSJacob Faibussowitsch   /*
10390e6b6b59SJacob Faibussowitsch     Creates the logging data structures; this is enabled even if logging is not turned on
10400e6b6b59SJacob Faibussowitsch     This is the last thing we do before returning to the user code to prevent having the
10410e6b6b59SJacob Faibussowitsch     logging numbers contaminated by any startup time associated with MPI
10420e6b6b59SJacob Faibussowitsch   */
10430e6b6b59SJacob Faibussowitsch   PetscCall(PetscLogInitialize());
10440e6b6b59SJacob Faibussowitsch 
10450e6b6b59SJacob Faibussowitsch   /*
1046a4af0ceeSJacob Faibussowitsch    Initialize PetscDevice and PetscDeviceContext
1047a4af0ceeSJacob Faibussowitsch 
1048a4af0ceeSJacob Faibussowitsch    Note to any future devs thinking of moving this, proper initialization requires:
1049a4af0ceeSJacob Faibussowitsch    1. MPI initialized
1050a4af0ceeSJacob Faibussowitsch    2. Options DB initialized
10510e6b6b59SJacob Faibussowitsch    3. Petsc error handling initialized, specifically signal handlers. This expects to set up
10520e6b6b59SJacob Faibussowitsch       its own SIGSEV handler via the push/pop interface.
10530e6b6b59SJacob Faibussowitsch    4. Logging initialized
1054a4af0ceeSJacob Faibussowitsch   */
10559566063dSJacob Faibussowitsch   PetscCall(PetscDeviceInitializeFromOptions_Internal(PETSC_COMM_WORLD));
1056a4af0ceeSJacob Faibussowitsch 
1057a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_VIENNACL)
1058a4af0ceeSJacob Faibussowitsch   flg = PETSC_FALSE;
1059d75802c7SJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-log_view", &flg));
10609566063dSJacob Faibussowitsch   if (!flg) PetscCall(PetscOptionsGetBool(NULL, NULL, "-viennacl_synchronize", &flg, NULL));
1061a4af0ceeSJacob Faibussowitsch   PetscViennaCLSynchronize = flg;
10629566063dSJacob Faibussowitsch   PetscCall(PetscViennaCLInit());
1063a4af0ceeSJacob Faibussowitsch #endif
1064a4af0ceeSJacob Faibussowitsch 
10659566063dSJacob Faibussowitsch   PetscCall(PetscCitationsInitialize());
106685649d77SJunchao Zhang 
106785649d77SJunchao Zhang #if defined(PETSC_HAVE_SAWS)
10689566063dSJacob Faibussowitsch   PetscCall(PetscInitializeSAWs(ftn ? NULL : help));
106927104ee2SJacob Faibussowitsch   flg = PETSC_FALSE;
10709566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-stack_view", &flg));
10719566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscStackViewSAWs());
107285649d77SJunchao Zhang #endif
107385649d77SJunchao Zhang 
107485649d77SJunchao Zhang   /*
107585649d77SJunchao Zhang      Load the dynamic libraries (on machines that support them), this registers all
107685649d77SJunchao Zhang      the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes)
107785649d77SJunchao Zhang   */
10789566063dSJacob Faibussowitsch   PetscCall(PetscInitialize_DynamicLibraries());
107985649d77SJunchao Zhang 
10809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size));
10819566063dSJacob Faibussowitsch   PetscCall(PetscInfo(NULL, "PETSc successfully started: number of processors = %d\n", size));
108296dcfd6cSBarry Smith   PetscCall(PetscGetHostName(hostname, sizeof(hostname)));
10839566063dSJacob Faibussowitsch   PetscCall(PetscInfo(NULL, "Running on machine: %s\n", hostname));
108485649d77SJunchao Zhang #if defined(PETSC_HAVE_OPENMP)
108585649d77SJunchao Zhang   {
108685649d77SJunchao Zhang     PetscBool omp_view_flag;
108785649d77SJunchao Zhang     char     *threads = getenv("OMP_NUM_THREADS");
108885649d77SJunchao Zhang 
108985649d77SJunchao Zhang     if (threads) {
10909566063dSJacob Faibussowitsch       PetscCall(PetscInfo(NULL, "Number of OpenMP threads %s (as given by OMP_NUM_THREADS)\n", threads));
109185649d77SJunchao Zhang       (void)sscanf(threads, "%" PetscInt_FMT, &PetscNumOMPThreads);
109285649d77SJunchao Zhang     } else {
10932f840973SStefano Zampini       PetscNumOMPThreads = (PetscInt)omp_get_max_threads();
10949566063dSJacob Faibussowitsch       PetscCall(PetscInfo(NULL, "Number of OpenMP threads %" PetscInt_FMT " (as given by omp_get_max_threads())\n", PetscNumOMPThreads));
109585649d77SJunchao Zhang     }
1096d0609cedSBarry Smith     PetscOptionsBegin(PETSC_COMM_WORLD, NULL, "OpenMP options", "Sys");
10979566063dSJacob Faibussowitsch     PetscCall(PetscOptionsInt("-omp_num_threads", "Number of OpenMP threads to use (can also use environmental variable OMP_NUM_THREADS", "None", PetscNumOMPThreads, &PetscNumOMPThreads, &flg));
10989566063dSJacob Faibussowitsch     PetscCall(PetscOptionsName("-omp_view", "Display OpenMP number of threads", NULL, &omp_view_flag));
1099d0609cedSBarry Smith     PetscOptionsEnd();
110085649d77SJunchao Zhang     if (flg) {
11011a0ee928SPierre Jolivet       PetscCall(PetscInfo(NULL, "Number of OpenMP threads %" PetscInt_FMT " (given by -omp_num_threads)\n", PetscNumOMPThreads));
110285649d77SJunchao Zhang       omp_set_num_threads((int)PetscNumOMPThreads);
110385649d77SJunchao Zhang     }
110448a46eb9SPierre Jolivet     if (omp_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "OpenMP: number of threads %" PetscInt_FMT "\n", PetscNumOMPThreads));
110585649d77SJunchao Zhang   }
110685649d77SJunchao Zhang #endif
110785649d77SJunchao Zhang 
1108046ed546SBarry Smith   PetscOptionsBegin(PETSC_COMM_WORLD, NULL, "BLAS options", "Sys");
1109046ed546SBarry Smith   PetscCall(PetscOptionsName("-blas_view", "Display number of threads to use for BLAS operations", NULL, &blas_view_flag));
1110046ed546SBarry Smith #if defined(PETSC_HAVE_BLI_THREAD_SET_NUM_THREADS) || defined(PETSC_HAVE_MKL_SET_NUM_THREADS) || defined(PETSC_HAVE_OPENBLAS_SET_NUM_THREADS)
1111046ed546SBarry Smith   {
1112046ed546SBarry Smith     char *threads = NULL;
1113046ed546SBarry Smith 
1114046ed546SBarry Smith     /* determine any default number of threads requested in the environment; TODO: Apple libraries? */
1115046ed546SBarry Smith   #if defined(PETSC_HAVE_BLI_THREAD_SET_NUM_THREADS)
1116046ed546SBarry Smith     threads = getenv("BLIS_NUM_THREADS");
1117046ed546SBarry Smith     if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of BLIS threads %s given by BLIS_NUM_THREADS\n", threads));
1118046ed546SBarry Smith     if (!threads) {
1119046ed546SBarry Smith       threads = getenv("OMP_NUM_THREADS");
1120046ed546SBarry Smith       if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of BLIS threads %s given by OMP_NUM_THREADS\n", threads));
1121046ed546SBarry Smith     }
1122046ed546SBarry Smith   #elif defined(PETSC_HAVE_MKL_SET_NUM_THREADS)
1123046ed546SBarry Smith     threads = getenv("MKL_NUM_THREADS");
1124046ed546SBarry Smith     if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of MKL threads %s given by MKL_NUM_THREADS\n", threads));
112597873304SJunchao Zhang     if (!threads) {
112697873304SJunchao Zhang       threads = getenv("OMP_NUM_THREADS");
112797873304SJunchao Zhang       if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of MKL threads %s given by OMP_NUM_THREADS\n", threads));
112897873304SJunchao Zhang     }
1129046ed546SBarry Smith   #elif defined(PETSC_HAVE_OPENBLAS_SET_NUM_THREADS)
1130046ed546SBarry Smith     threads = getenv("OPENBLAS_NUM_THREADS");
1131046ed546SBarry Smith     if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of OpenBLAS threads %s given by OPENBLAS_NUM_THREADS\n", threads));
1132046ed546SBarry Smith     if (!threads) {
1133046ed546SBarry Smith       threads = getenv("OMP_NUM_THREADS");
1134046ed546SBarry Smith       if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of OpenBLAS threads %s given by OMP_NUM_THREADS\n", threads));
1135046ed546SBarry Smith     }
1136046ed546SBarry Smith   #endif
1137046ed546SBarry Smith     if (threads) (void)sscanf(threads, "%" PetscInt_FMT, &PetscNumBLASThreads);
1138046ed546SBarry Smith     PetscCall(PetscOptionsInt("-blas_num_threads", "Number of threads to use for BLAS operations", "None", PetscNumBLASThreads, &PetscNumBLASThreads, &flg));
113997873304SJunchao Zhang     if (flg) PetscCall(PetscInfo(NULL, "BLAS: Command line number of BLAS thread %" PetscInt_FMT "given by -blas_num_threads\n", PetscNumBLASThreads));
114097873304SJunchao Zhang     if (flg || threads) {
1141046ed546SBarry Smith       PetscCall(PetscBLASSetNumThreads(PetscNumBLASThreads));
1142046ed546SBarry Smith       if (blas_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "BLAS: number of threads %" PetscInt_FMT "\n", PetscNumBLASThreads));
1143046ed546SBarry Smith     }
114497873304SJunchao Zhang   }
1145046ed546SBarry Smith #elif defined(PETSC_HAVE_APPLE_ACCELERATE)
1146046ed546SBarry Smith   PetscCall(PetscInfo(NULL, "BLAS: Apple Accelerate library, thread support with no user control\n"));
1147046ed546SBarry Smith   if (blas_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "BLAS: Apple Accelerate library, thread support with no user control\n"));
1148046ed546SBarry Smith #else
1149046ed546SBarry Smith   if (blas_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "BLAS: no thread support\n"));
1150046ed546SBarry Smith #endif
1151046ed546SBarry Smith   PetscOptionsEnd();
1152046ed546SBarry Smith 
115385649d77SJunchao Zhang #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32)
115485649d77SJunchao Zhang   /*
115585649d77SJunchao Zhang       Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI
115685649d77SJunchao Zhang 
115785649d77SJunchao Zhang       Currently not used because it is not supported by MPICH.
115885649d77SJunchao Zhang   */
11599566063dSJacob Faibussowitsch   if (!PetscBinaryBigEndian()) PetscCallMPI(MPI_Register_datarep((char *)"petsc", PetscDataRep_read_conv_fn, PetscDataRep_write_conv_fn, PetscDataRep_extent_fn, NULL));
116085649d77SJunchao Zhang #endif
116185649d77SJunchao Zhang 
116285649d77SJunchao Zhang #if defined(PETSC_SERIALIZE_FUNCTIONS)
11639566063dSJacob Faibussowitsch   PetscCall(PetscFPTCreate(10000));
116485649d77SJunchao Zhang #endif
116585649d77SJunchao Zhang 
116685649d77SJunchao Zhang #if defined(PETSC_HAVE_HWLOC)
116785649d77SJunchao Zhang   {
116885649d77SJunchao Zhang     PetscViewer viewer;
1169648c30bcSBarry Smith     PetscCall(PetscOptionsCreateViewer(PETSC_COMM_WORLD, NULL, NULL, "-process_view", &viewer, NULL, &flg));
117085649d77SJunchao Zhang     if (flg) {
11719566063dSJacob Faibussowitsch       PetscCall(PetscProcessPlacementView(viewer));
1172648c30bcSBarry Smith       PetscCall(PetscViewerDestroy(&viewer));
117385649d77SJunchao Zhang     }
117485649d77SJunchao Zhang   }
117585649d77SJunchao Zhang #endif
117685649d77SJunchao Zhang 
117785649d77SJunchao Zhang   flg = PETSC_TRUE;
11789566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-viewfromoptions", &flg, NULL));
1179648c30bcSBarry Smith   if (!flg) PetscCall(PetscOptionsPushCreateViewerOff(PETSC_TRUE));
118085649d77SJunchao Zhang 
118185649d77SJunchao Zhang #if defined(PETSC_HAVE_ADIOS)
11823ba16761SJacob Faibussowitsch   PetscCallExternal(adios_init_noxml, PETSC_COMM_WORLD);
11833ba16761SJacob Faibussowitsch   PetscCallExternal(adios_declare_group, &Petsc_adios_group, "PETSc", "", adios_stat_default);
11843ba16761SJacob Faibussowitsch   PetscCallExternal(adios_select_method, Petsc_adios_group, "MPI", "", "");
11853ba16761SJacob Faibussowitsch   PetscCallExternal(adios_read_init_method, ADIOS_READ_METHOD_BP, PETSC_COMM_WORLD, "");
118685649d77SJunchao Zhang #endif
118785649d77SJunchao Zhang 
118885649d77SJunchao Zhang #if defined(__VALGRIND_H)
118985649d77SJunchao Zhang   PETSC_RUNNING_ON_VALGRIND = RUNNING_ON_VALGRIND ? PETSC_TRUE : PETSC_FALSE;
119085649d77SJunchao Zhang   #if defined(PETSC_USING_DARWIN) && defined(PETSC_BLASLAPACK_SDOT_RETURNS_DOUBLE)
1191337bb527SBarry Smith   if (PETSC_RUNNING_ON_VALGRIND) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "WARNING: Running valgrind with the macOS native BLAS and LAPACK can fail. If it fails, try configuring with --download-fblaslapack or --download-f2cblaslapack"));
119285649d77SJunchao Zhang   #endif
119385649d77SJunchao Zhang #endif
119485649d77SJunchao Zhang   /*
119585649d77SJunchao Zhang       Set flag that we are completely initialized
119685649d77SJunchao Zhang   */
119785649d77SJunchao Zhang   PetscInitializeCalled = PETSC_TRUE;
119885649d77SJunchao Zhang 
11999566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-python", &flg));
12009566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscPythonInitialize(NULL, NULL));
1201f1f2ae84SBarry Smith 
1202f1f2ae84SBarry Smith   PetscCall(PetscOptionsHasName(NULL, NULL, "-mpi_linear_solver_server", &flg));
12039f0612e4SBarry Smith   if (flg) PetscCall(PetscInfo(NULL, "Running MPI Linear Solver Server\n"));
1204f1f2ae84SBarry Smith   if (PetscDefined(USE_SINGLE_LIBRARY) && flg) PetscCall(PCMPIServerBegin());
1205f1f2ae84SBarry Smith   else PetscCheck(!flg, PETSC_COMM_WORLD, PETSC_ERR_SUP, "PETSc configured using -with-single-library=0; -mpi_linear_solver_server not supported in that case");
12063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
120785649d77SJunchao Zhang }
120885649d77SJunchao Zhang 
120910450e9eSJacob Faibussowitsch // "Unknown section 'Environmental Variables'"
121010450e9eSJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
1211e5c89e4eSSatish Balay /*@C
1212e5c89e4eSSatish Balay   PetscInitialize - Initializes the PETSc database and MPI.
1213811af0c4SBarry Smith   `PetscInitialize()` calls MPI_Init() if that has yet to be called,
1214e5c89e4eSSatish Balay   so this routine should always be called near the beginning of
1215e5c89e4eSSatish Balay   your program -- usually the very first line!
1216e5c89e4eSSatish Balay 
1217811af0c4SBarry Smith   Collective on `MPI_COMM_WORLD` or `PETSC_COMM_WORLD` if it has been set
1218e5c89e4eSSatish Balay 
1219e5c89e4eSSatish Balay   Input Parameters:
1220e5c89e4eSSatish Balay + argc - count of number of command line arguments
1221e5c89e4eSSatish Balay . args - the command line arguments
1222be10d61cSLisandro Dalcin . file - [optional] PETSc database file, append ":yaml" to filename to specify YAML options format.
1223be10d61cSLisandro Dalcin           Use NULL or empty string to not check for code specific file.
1224be10d61cSLisandro Dalcin           Also checks ~/.petscrc, .petscrc and petscrc.
1225c5b5d8d5SVaclav Hapla           Use -skip_petscrc in the code specific file (or command line) to skip ~/.petscrc, .petscrc and petscrc files.
12260298fd71SBarry Smith - help - [optional] Help message to print, use NULL for no message
1227e5c89e4eSSatish Balay 
1228811af0c4SBarry Smith    If you wish PETSc code to run ONLY on a subcommunicator of `MPI_COMM_WORLD`, create that
1229811af0c4SBarry Smith    communicator first and assign it to `PETSC_COMM_WORLD` BEFORE calling `PetscInitialize()`. Thus if you are running a
1230811af0c4SBarry Smith    four process job and two processes will run PETSc and have `PetscInitialize()` and PetscFinalize() and two process will not,
1231811af0c4SBarry Smith    then do this. If ALL processes in the job are using `PetscInitialize()` and `PetscFinalize()` then you don't need to do this, even
123205827820SBarry Smith    if different subcommunicators of the job are doing different things with PETSc.
1233e5c89e4eSSatish Balay 
1234e5c89e4eSSatish Balay   Options Database Keys:
12357ca660e7SBarry Smith + -help [intro]                                       - prints help method for each option; if intro is given the program stops after printing the introductory help message
12367ca660e7SBarry Smith . -start_in_debugger [noxterm,dbx,xdb,gdb,...]        - Starts program in debugger
1237e5c89e4eSSatish Balay . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected
12388a690491SBarry Smith . -on_error_emacs <machinename>                       - causes emacsclient to jump to error file
1239811af0c4SBarry Smith . -on_error_abort                                     - calls `abort()` when error detected (no traceback)
1240811af0c4SBarry Smith . -on_error_mpiabort                                  - calls `MPI_abort()` when error detected
12411af3601dSBarry Smith . -error_output_stdout                                - prints PETSc error messages to stdout instead of the default stderr
12428a690491SBarry Smith . -error_output_none                                  - does not print the error messages (but handles errors in the same way as if this was not called)
1243bf4d2887SBarry Smith . -debugger_ranks [rank1,rank2,...]                   - Indicates ranks to start in debugger
1244e5c89e4eSSatish Balay . -debugger_pause [sleeptime] (in seconds)            - Pauses debugger
1245e5c89e4eSSatish Balay . -stop_for_debugger                                  - Print message on how to attach debugger manually to
1246e5c89e4eSSatish Balay                         process and wait (-debugger_pause) seconds for attachment
1247aee23540SBarry Smith . -malloc_dump                                        - prints a list of all unfreed memory at the end of the run
1248983cdb30SBarry Smith . -malloc_test                                        - like -malloc_dump -malloc_debug, only active for debugging build, ignored in optimized build. Often set in PETSC_OPTIONS environmental variable
1249811af0c4SBarry Smith . -malloc_view                                        - show a list of all allocated memory during `PetscFinalize()`
125092f119d6SBarry Smith . -malloc_view_threshold <t>                          - only list memory allocations of size greater than t with -malloc_view
1251608c71bfSMatthew G. Knepley . -malloc_requested_size                              - malloc logging will record the requested size rather than size after alignment
125292f119d6SBarry Smith . -fp_trap                                            - Stops on floating point exceptions
1253e5c89e4eSSatish Balay . -no_signal_handler                                  - Indicates not to trap error signals
1254e5c89e4eSSatish Balay . -shared_tmp                                         - indicates /tmp directory is shared by all processors
1255e5c89e4eSSatish Balay . -not_shared_tmp                                     - each processor has own /tmp
1256e5c89e4eSSatish Balay . -tmp                                                - alternative name of /tmp directory
1257d7c1f440SPierre Jolivet - -mpiuni-allow-multiprocess-launch                   - allow mpiexec to launch multiple independent MPI-Uni jobs, otherwise a sanity check error is invoked to prevent misuse of MPI-Uni
1258e5c89e4eSSatish Balay 
1259c5b5d8d5SVaclav Hapla   Options Database Keys for Option Database:
1260c5b5d8d5SVaclav Hapla + -skip_petscrc           - skip the default option files ~/.petscrc, .petscrc, petscrc
1261c5b5d8d5SVaclav Hapla . -options_monitor        - monitor all set options to standard output for the whole program run
1262811af0c4SBarry Smith - -options_monitor_cancel - cancel options monitoring hard-wired using `PetscOptionsMonitorSet()`
1263c5b5d8d5SVaclav Hapla 
1264c5b5d8d5SVaclav Hapla    Options -options_monitor_{all,cancel} are
1265c5b5d8d5SVaclav Hapla    position-independent and apply to all options set since the PETSc start.
1266c5b5d8d5SVaclav Hapla    They can be used also in option files.
1267c5b5d8d5SVaclav Hapla 
1268811af0c4SBarry Smith    See `PetscOptionsMonitorSet()` to do monitoring programmatically.
1269c5b5d8d5SVaclav Hapla 
1270e5c89e4eSSatish Balay   Options Database Keys for Profiling:
1271a7f22e61SSatish Balay    See Users-Manual: ch_profiling for details.
1272811af0c4SBarry Smith + -info [filename][:[~]<list,of,classnames>[:[~]self]] - Prints verbose information. See `PetscInfo()`.
1273217044c2SLisandro Dalcin . -log_sync                                            - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event,
1274217044c2SLisandro Dalcin         however it slows things down and gives a distorted view of the overall runtime.
1275495fc317SBarry Smith . -log_trace [filename]                                - Print traces of all PETSc calls to the screen (useful to determine where a program
1276811af0c4SBarry Smith         hangs without running in the debugger).  See `PetscLogTraceBegin()`.
1277ad2e3d55SToby Isaac . -log_view [:filename:format][,[:filename:format]...] - Prints summary of flop and timing information to screen or file, see `PetscLogView()` (up to 4 viewers)
1278811af0c4SBarry Smith . -log_view_memory                                     - Includes in the summary from -log_view the memory used in each event, see `PetscLogView()`.
1279811af0c4SBarry Smith . -log_view_gpu_time                                   - Includes in the summary from -log_view the time used in each GPU kernel, see `PetscLogView().
1280f5d6ab90SLisandro Dalcin . -log_exclude: <vec,mat,pc,ksp,snes>                  - excludes subset of object classes from logging
1281b665b14eSToby Isaac . -log [filename]                                      - Logs profiling information in a dump file, see `PetscLogDump()`.
1282b665b14eSToby Isaac . -log_all [filename]                                  - Same as `-log`.
1283c2f74817SBarry Smith . -log_mpe [filename]                                  - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution)
12842611ad71SToby Isaac . -log_perfstubs                                       - Starts a log handler with the perfstubs interface (which is used by TAU)
128561cc7448SToby Isaac . -log_nvtx                                            - Starts an nvtx log handler for use with Nsight
1286811af0c4SBarry Smith . -viewfromoptions on,off                              - Enable or disable `XXXSetFromOptions()` calls, for applications with many small solves turn this off
1287983cdb30SBarry Smith . -get_total_flops                                     - Returns total flops done by all processors
1288983cdb30SBarry Smith . -memory_view                                         - Print memory usage at end of run
1289c2f74817SBarry Smith - -check_pointer_intensity 0,1,2                       - if pointers are checked for validity (debug version only), using 0 will result in faster code
1290495fc317SBarry Smith 
1291ffbd1cfbSBarry Smith   Options Database Keys for SAWs:
1292ffbd1cfbSBarry Smith + -saws_port <portnumber>        - port number to publish SAWs data, default is 8080
1293ffbd1cfbSBarry Smith . -saws_port_auto_select         - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen
1294ffbd1cfbSBarry Smith                                    this is useful when you are running many jobs that utilize SAWs at the same time
1295ffbd1cfbSBarry Smith . -saws_log <filename>           - save a log of all SAWs communication
1296ffbd1cfbSBarry Smith . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP
1297ffbd1cfbSBarry Smith - -saws_root <directory>         - allow SAWs to have access to the given directory to search for requested resources and files
1298ffbd1cfbSBarry Smith 
1299e5c89e4eSSatish Balay   Environmental Variables:
1300811af0c4SBarry Smith +   `PETSC_TMP` - alternative tmp directory
1301811af0c4SBarry Smith .   `PETSC_SHARED_TMP` - tmp is shared by all processes
1302811af0c4SBarry Smith .   `PETSC_NOT_SHARED_TMP` - each process has its own private tmp
1303811af0c4SBarry Smith .   `PETSC_OPTIONS` - a string containing additional options for petsc in the form of command line "-key value" pairs
1304811af0c4SBarry Smith .   `PETSC_OPTIONS_YAML` - (requires configuring PETSc to use libyaml) a string containing additional options for petsc in the form of a YAML document
1305811af0c4SBarry Smith .   `PETSC_VIEWER_SOCKET_PORT` - socket number to use for socket viewer
1306811af0c4SBarry Smith -   `PETSC_VIEWER_SOCKET_MACHINE` - machine to use for socket viewer to connect to
1307e5c89e4eSSatish Balay 
1308e5c89e4eSSatish Balay   Level: beginner
1309e5c89e4eSSatish Balay 
1310811af0c4SBarry Smith   Note:
1311811af0c4SBarry Smith   If for some reason you must call `MPI_Init()` separately, call
1312811af0c4SBarry Smith   it before `PetscInitialize()`.
1313e5c89e4eSSatish Balay 
1314811af0c4SBarry Smith   Fortran Notes:
1315811af0c4SBarry Smith   In Fortran this routine can be called with
1316811af0c4SBarry Smith .vb
1317811af0c4SBarry Smith        call PetscInitialize(ierr)
1318811af0c4SBarry Smith        call PetscInitialize(file,ierr) or
1319811af0c4SBarry Smith        call PetscInitialize(file,help,ierr)
1320811af0c4SBarry Smith .ve
1321e5c89e4eSSatish Balay 
1322811af0c4SBarry Smith   If your main program is C but you call Fortran code that also uses PETSc you need to call `PetscInitializeFortran()` soon after
1323811af0c4SBarry Smith   calling `PetscInitialize()`.
1324e5c89e4eSSatish Balay 
13255dedd997SBarry Smith   Options Database Key for Developers:
13265dedd997SBarry Smith . -checkfunctionlist - automatically checks that function lists associated with objects are correctly cleaned up. Produces messages of the form:
13275dedd997SBarry Smith     "function name: MatInodeGetInodeSizes_C" if they are not cleaned up. This flag is always set for the test harness (in framework.py)
13285dedd997SBarry Smith 
1329db781477SPatrick Sanan .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArgs()`, `PetscInitializeNoArguments()`, `PetscLogGpuTime()`
1330e5c89e4eSSatish Balay @*/
1331d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitialize(int *argc, char ***args, const char file[], const char help[])
1332d71ae5a4SJacob Faibussowitsch {
133385649d77SJunchao Zhang   PetscMPIInt flag;
1334983cdb30SBarry Smith   const char *prog = "Unknown Name";
1335e5c89e4eSSatish Balay 
133627104ee2SJacob Faibussowitsch   PetscFunctionBegin;
13373ba16761SJacob Faibussowitsch   if (PetscInitializeCalled) PetscFunctionReturn(PETSC_SUCCESS);
13389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Initialized(&flag));
1339e5c89e4eSSatish Balay   if (!flag) {
134039a651e2SJacob Faibussowitsch     PetscCheck(PETSC_COMM_WORLD == MPI_COMM_NULL, PETSC_COMM_SELF, PETSC_ERR_SUP, "You cannot set PETSC_COMM_WORLD if you have not initialized MPI first");
13419566063dSJacob Faibussowitsch     PetscCall(PetscPreMPIInit_Private());
13425e765c61SJed Brown #if defined(PETSC_HAVE_MPI_INIT_THREAD)
13435e765c61SJed Brown     {
1344835d5ba2SJunchao Zhang       PetscMPIInt provided;
1345835d5ba2SJunchao Zhang       PetscCallMPI(MPI_Init_thread(argc, args, PETSC_MPI_THREAD_REQUIRED == PETSC_DECIDE ? MPI_THREAD_FUNNELED : PETSC_MPI_THREAD_REQUIRED, &provided));
1346835d5ba2SJunchao Zhang       PetscCheck(PETSC_MPI_THREAD_REQUIRED == PETSC_DECIDE || provided >= PETSC_MPI_THREAD_REQUIRED, PETSC_COMM_SELF, PETSC_ERR_MPI, "The MPI implementation's provided thread level is less than what you required");
1347835d5ba2SJunchao Zhang       if (PETSC_MPI_THREAD_REQUIRED == PETSC_DECIDE) PETSC_MPI_THREAD_REQUIRED = MPI_THREAD_FUNNELED; // assign it a valid value after check-up
13485e765c61SJed Brown     }
13495e765c61SJed Brown #else
13509566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Init(argc, args));
13515e765c61SJed Brown #endif
1352e5c89e4eSSatish Balay     PetscBeganMPI = PETSC_TRUE;
1353e5c89e4eSSatish Balay   }
13544dfee713SSatish Balay 
135585649d77SJunchao Zhang   if (argc && *argc) prog = **args;
1356e5c89e4eSSatish Balay   if (argc && args) {
1357e5c89e4eSSatish Balay     PetscGlobalArgc = *argc;
1358e5c89e4eSSatish Balay     PetscGlobalArgs = *args;
1359e5c89e4eSSatish Balay   }
1360811af0c4SBarry Smith   PetscCall(PetscInitialize_Common(prog, file, help, PETSC_FALSE, PETSC_FALSE, 0));
13613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1362e5c89e4eSSatish Balay }
1363e5c89e4eSSatish Balay 
136495c0884eSLisandro Dalcin PETSC_INTERN PetscObject *PetscObjects;
1365ecfe9a72SLisandro Dalcin PETSC_INTERN PetscInt     PetscObjectsCounts;
1366ecfe9a72SLisandro Dalcin PETSC_INTERN PetscInt     PetscObjectsMaxCounts;
136795c0884eSLisandro Dalcin PETSC_INTERN PetscBool    PetscObjectsLog;
1368e5c89e4eSSatish Balay 
1369008a6e76SBarry Smith /*
1370008a6e76SBarry Smith     Frees all the MPI types and operations that PETSc may have created
1371008a6e76SBarry Smith */
1372d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFreeMPIResources(void)
1373d71ae5a4SJacob Faibussowitsch {
1374008a6e76SBarry Smith   PetscFunctionBegin;
1375ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)
13769566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU___FLOAT128));
137774c01ffaSSatish Balay   #if defined(PETSC_HAVE_COMPLEX)
13789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU___COMPLEX128));
1379008a6e76SBarry Smith   #endif
138074c01ffaSSatish Balay #endif
1381ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16)
13829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU___FP16));
1383008a6e76SBarry Smith #endif
1384008a6e76SBarry Smith 
1385de272c7aSSatish Balay #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16)
13869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_free(&MPIU_SUM));
1387613bf2b2SPierre Jolivet   PetscCallMPI(MPI_Op_free(&MPIU_MAX));
1388613bf2b2SPierre Jolivet   PetscCallMPI(MPI_Op_free(&MPIU_MIN));
1389ef384fdeSPierre Jolivet #elif (defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)) || (defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16))
13909e517322SPierre Jolivet   PetscCallMPI(MPI_Op_free(&MPIU_SUM___FP16___FLOAT128));
1391008a6e76SBarry Smith #endif
1392008a6e76SBarry Smith 
13939566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU_2SCALAR));
13949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU_REAL_INT));
13959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU_SCALAR_INT));
139640df0d72SSatish Balay #if defined(PETSC_USE_64BIT_INDICES)
13979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU_2INT));
13986497c311SBarry Smith   PetscCallMPI(MPI_Type_free(&MPIU_INT_MPIINT));
1399008a6e76SBarry Smith #endif
14009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPI_4INT));
14019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&MPIU_4INT));
14029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_free(&MPIU_MAXSUM_OP));
140362e5d2d2SJDBetteridge   PetscCallMPI(MPI_Op_free(&Petsc_Garbage_SetIntersectOp));
14043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1405008a6e76SBarry Smith }
1406008a6e76SBarry Smith 
1407a4af0ceeSJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscLogFinalize(void);
14089f0612e4SBarry Smith PETSC_EXTERN PetscErrorCode PetscFreeAlign(void *, int, const char[], const char[]);
1409a4af0ceeSJacob Faibussowitsch 
14109f0612e4SBarry Smith /*@
1411e5c89e4eSSatish Balay   PetscFinalize - Checks for options to be called at the conclusion
1412811af0c4SBarry Smith   of the program. `MPI_Finalize()` is called only if the user had not
1413811af0c4SBarry Smith   called `MPI_Init()` before calling `PetscInitialize()`.
1414e5c89e4eSSatish Balay 
1415811af0c4SBarry Smith   Collective on `PETSC_COMM_WORLD`
1416e5c89e4eSSatish Balay 
1417e5c89e4eSSatish Balay   Options Database Keys:
1418811af0c4SBarry Smith + -options_view                    - Calls `PetscOptionsView()`
1419e5c89e4eSSatish Balay . -options_left                    - Prints unused options that remain in the database
14207eb1d149SBarry Smith . -objects_dump [all]              - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed
1421e5c89e4eSSatish Balay . -mpidump                         - Calls PetscMPIDump()
1422811af0c4SBarry Smith . -malloc_dump <optional filename> - Calls `PetscMallocDump()`, displays all memory allocated that has not been freed
14234bd3d7f8SBarry Smith . -memory_view                     - Prints total memory usage
14244bd3d7f8SBarry Smith - -malloc_view <optional filename> - Prints list of all memory allocated and in what functions
1425e5c89e4eSSatish Balay 
1426e5c89e4eSSatish Balay   Level: beginner
1427e5c89e4eSSatish Balay 
1428e5c89e4eSSatish Balay   Note:
1429811af0c4SBarry Smith   See `PetscInitialize()` for other runtime options.
1430e5c89e4eSSatish Balay 
1431db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscOptionsView()`, `PetscMallocDump()`, `PetscMPIDump()`, `PetscEnd()`
1432e5c89e4eSSatish Balay @*/
1433d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFinalize(void)
1434d71ae5a4SJacob Faibussowitsch {
14354bb5149bSJed Brown   PetscMPIInt rank;
1436a8d2bbe5SBarry Smith   PetscInt    nopt;
14372bf49c77SBarry Smith   PetscBool   flg1 = PETSC_FALSE, flg2 = PETSC_FALSE, flg3 = PETSC_FALSE;
1438dff31646SBarry Smith   PetscBool   flg;
143910463e74SBarry Smith   char        mname[PETSC_MAX_PATH_LEN];
1440e5c89e4eSSatish Balay 
14413cbbc5ffSBarry Smith   PetscFunctionBegin;
144239a651e2SJacob Faibussowitsch   PetscCheck(PetscInitializeCalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "PetscInitialize() must be called before PetscFinalize()");
14439566063dSJacob Faibussowitsch   PetscCall(PetscInfo(NULL, "PetscFinalize() called\n"));
1444b022a5c1SBarry Smith 
1445f1f2ae84SBarry Smith   PetscCall(PetscOptionsHasName(NULL, NULL, "-mpi_linear_solver_server", &flg));
1446f1f2ae84SBarry Smith   if (PetscDefined(USE_SINGLE_LIBRARY) && flg) PetscCall(PCMPIServerEnd());
1447f1f2ae84SBarry Smith 
14489f0612e4SBarry Smith   PetscCall(PetscFreeAlign(PetscGlobalArgsFortran, 0, NULL, NULL));
14499f0612e4SBarry Smith   PetscGlobalArgc = 0;
14509f0612e4SBarry Smith   PetscGlobalArgs = NULL;
14519f0612e4SBarry Smith 
145262e5d2d2SJDBetteridge   /* Clean up Garbage automatically on COMM_SELF and COMM_WORLD at finalize */
145362e5d2d2SJDBetteridge   {
145462e5d2d2SJDBetteridge     union
145562e5d2d2SJDBetteridge     {
145662e5d2d2SJDBetteridge       MPI_Comm comm;
145762e5d2d2SJDBetteridge       void    *ptr;
145862e5d2d2SJDBetteridge     } ucomm;
145962e5d2d2SJDBetteridge     PetscMPIInt flg;
146062e5d2d2SJDBetteridge     void       *tmp;
146162e5d2d2SJDBetteridge 
146262e5d2d2SJDBetteridge     PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_SELF, Petsc_InnerComm_keyval, &ucomm, &flg));
146362e5d2d2SJDBetteridge     if (flg) PetscCallMPI(MPI_Comm_get_attr(ucomm.comm, Petsc_Garbage_HMap_keyval, &tmp, &flg));
146462e5d2d2SJDBetteridge     if (flg) PetscCall(PetscGarbageCleanup(PETSC_COMM_SELF));
146562e5d2d2SJDBetteridge     PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_WORLD, Petsc_InnerComm_keyval, &ucomm, &flg));
146662e5d2d2SJDBetteridge     if (flg) PetscCallMPI(MPI_Comm_get_attr(ucomm.comm, Petsc_Garbage_HMap_keyval, &tmp, &flg));
146762e5d2d2SJDBetteridge     if (flg) PetscCall(PetscGarbageCleanup(PETSC_COMM_WORLD));
146862e5d2d2SJDBetteridge   }
146962e5d2d2SJDBetteridge 
14709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank));
1471a56f64adSBarry Smith #if defined(PETSC_HAVE_ADIOS)
14723ba16761SJacob Faibussowitsch   PetscCallExternal(adios_read_finalize_method, ADIOS_READ_METHOD_BP_AGGREGATE);
14733ba16761SJacob Faibussowitsch   PetscCallExternal(adios_finalize, rank);
1474a56f64adSBarry Smith #endif
14759566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-citations", &flg));
1476dff31646SBarry Smith   if (flg) {
14771f817a21SBarry Smith     char *cits, filename[PETSC_MAX_PATH_LEN];
14781f817a21SBarry Smith     FILE *fd = PETSC_STDOUT;
14791f817a21SBarry Smith 
14809566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-citations", filename, sizeof(filename), NULL));
148148a46eb9SPierre Jolivet     if (filename[0]) PetscCall(PetscFOpen(PETSC_COMM_WORLD, filename, "w", &fd));
14829566063dSJacob Faibussowitsch     PetscCall(PetscSegBufferGet(PetscCitationsList, 1, &cits));
1483dff31646SBarry Smith     cits[0] = 0;
14849566063dSJacob Faibussowitsch     PetscCall(PetscSegBufferExtractAlloc(PetscCitationsList, &cits));
14859566063dSJacob Faibussowitsch     PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "If you publish results based on this computation please cite the following:\n"));
14869566063dSJacob Faibussowitsch     PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "===========================================================================\n"));
14879566063dSJacob Faibussowitsch     PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "%s", cits));
14889566063dSJacob Faibussowitsch     PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "===========================================================================\n"));
14899566063dSJacob Faibussowitsch     PetscCall(PetscFClose(PETSC_COMM_WORLD, fd));
14909566063dSJacob Faibussowitsch     PetscCall(PetscFree(cits));
1491dff31646SBarry Smith   }
14929566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferDestroy(&PetscCitationsList));
1493dff31646SBarry Smith 
14942d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS)
14959566063dSJacob Faibussowitsch   PetscCall(PetscFPTDestroy());
14962d53ad75SBarry Smith #endif
14972d53ad75SBarry Smith 
1498e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS)
1499dff31646SBarry Smith   flg = PETSC_FALSE;
15009566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-saw_options", &flg, NULL));
15011baa6e33SBarry Smith   if (flg) PetscCall(PetscOptionsSAWsDestroy());
1502d5649816SBarry Smith #endif
1503d5649816SBarry Smith 
1504681455b2SBarry Smith #if defined(PETSC_HAVE_X)
1505681455b2SBarry Smith   flg1 = PETSC_FALSE;
15069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-x_virtual", &flg1, NULL));
1507681455b2SBarry Smith   if (flg1) {
1508681455b2SBarry Smith     /*  this is a crude hack, but better than nothing */
1509a5af8288SJose E. Roman     PetscCall(PetscPOpen(PETSC_COMM_WORLD, NULL, "pkill -15 Xvfb", "r", NULL));
1510681455b2SBarry Smith   }
1511681455b2SBarry Smith #endif
1512681455b2SBarry Smith 
151367584ceeSBarry Smith #if !defined(PETSC_HAVE_THREADSAFETY)
15149566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-memory_view", &flg2, NULL));
151548a46eb9SPierre Jolivet   if (flg2) PetscCall(PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD, "Summary of Memory Usage in PETSc\n"));
151667584ceeSBarry Smith #endif
1517e5c89e4eSSatish Balay 
15182611ad71SToby Isaac   if (PetscDefined(USE_LOG)) {
151990d69ab7SBarry Smith     flg1 = PETSC_FALSE;
15209566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetBool(NULL, NULL, "-get_total_flops", &flg1, NULL));
1521e5c89e4eSSatish Balay     if (flg1) {
1522e5c89e4eSSatish Balay       PetscLogDouble flops = 0;
15239566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Reduce(&petsc_TotalFlops, &flops, 1, MPI_DOUBLE, MPI_SUM, 0, PETSC_COMM_WORLD));
15249566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Total flops over all processors %g\n", flops));
1525e5c89e4eSSatish Balay     }
15262611ad71SToby Isaac   }
1527e5c89e4eSSatish Balay 
15282611ad71SToby Isaac   if (PetscDefined(USE_LOG) && PetscDefined(HAVE_MPE)) {
1529e5c89e4eSSatish Balay     mname[0] = 0;
15309566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-log_mpe", mname, sizeof(mname), &flg1));
15312611ad71SToby Isaac     if (flg1) PetscCall(PetscLogMPEDump(mname[0] ? mname : NULL));
1532e5c89e4eSSatish Balay   }
1533a297a907SKarl Rupp 
1534c9903f8fSJunchao Zhang #if defined(PETSC_HAVE_KOKKOS)
1535c9903f8fSJunchao Zhang   // Free petsc/kokkos stuff before the potentially non-null petsc default gpu stream is destroyed by PetscObjectRegisterDestroyAll
1536c9903f8fSJunchao Zhang   if (PetscKokkosInitialized) {
1537c9903f8fSJunchao Zhang     PetscCall(PetscKokkosFinalize_Private());
1538c9903f8fSJunchao Zhang     PetscKokkosInitialized = PETSC_FALSE;
1539c9903f8fSJunchao Zhang   }
1540c9903f8fSJunchao Zhang #endif
1541c9903f8fSJunchao Zhang 
15423048253cSJacob Faibussowitsch   // Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_().
15439566063dSJacob Faibussowitsch   PetscCall(PetscObjectRegisterDestroyAll());
1544dd710f27SBarry Smith 
15452611ad71SToby Isaac   if (PetscDefined(USE_LOG)) {
1546648c30bcSBarry Smith     PetscCall(PetscOptionsPushCreateViewerOff(PETSC_FALSE));
15479566063dSJacob Faibussowitsch     PetscCall(PetscLogViewFromOptions());
1548648c30bcSBarry Smith     PetscCall(PetscOptionsPopCreateViewerOff());
1549473903fcSJunchao Zhang     //  It should be turned on with PetscLogGpuTime() and never turned off except in this place
1550473903fcSJunchao Zhang     PetscLogGpuTimeFlag = PETSC_FALSE;
155187c3beb6SLisandro Dalcin 
15523048253cSJacob Faibussowitsch     // Free any objects created by the last block of code.
15539566063dSJacob Faibussowitsch     PetscCall(PetscObjectRegisterDestroyAll());
1554dd710f27SBarry Smith 
1555dd710f27SBarry Smith     mname[0] = 0;
15569566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-log_all", mname, sizeof(mname), &flg1));
15579566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-log", mname, sizeof(mname), &flg2));
15589566063dSJacob Faibussowitsch     if (flg1 || flg2) PetscCall(PetscLogDump(mname));
15592611ad71SToby Isaac   }
156010463e74SBarry Smith 
156190d69ab7SBarry Smith   flg1 = PETSC_FALSE;
15629566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-no_signal_handler", &flg1, NULL));
15639566063dSJacob Faibussowitsch   if (!flg1) PetscCall(PetscPopSignalHandler());
156490d69ab7SBarry Smith   flg1 = PETSC_FALSE;
15659566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-mpidump", &flg1, NULL));
15661baa6e33SBarry Smith   if (flg1) PetscCall(PetscMPIDump(stdout));
156790d69ab7SBarry Smith   flg1 = PETSC_FALSE;
156890d69ab7SBarry Smith   flg2 = PETSC_FALSE;
15698bb29257SSatish Balay   /* preemptive call to avoid listing this option in options table as unused */
15709566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-malloc_dump", &flg1));
15719566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-objects_dump", &flg1));
15729566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-options_view", &flg2, NULL));
1573e4c476e2SSatish Balay 
157457b1f488SBarry Smith   if (flg2) { PetscCall(PetscOptionsView(NULL, PETSC_VIEWER_STDOUT_WORLD)); }
1575e5c89e4eSSatish Balay 
1576e5c89e4eSSatish Balay   /* to prevent PETSc -options_left from warning */
15779566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-nox", &flg1));
15789566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(NULL, NULL, "-nox_warning", &flg1));
1579e5c89e4eSSatish Balay 
158033fc4174SSatish Balay   flg3 = PETSC_FALSE; /* default value is required */
15819566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-options_left", &flg3, &flg1));
158259f199a7SJed Brown   if (!flg1) flg3 = PETSC_TRUE;
1583e5c89e4eSSatish Balay   if (flg3) {
15843de2bfdfSBarry Smith     if (!flg2 && flg1) { /* have not yet printed the options */
158557b1f488SBarry Smith       PetscCall(PetscOptionsView(NULL, PETSC_VIEWER_STDOUT_WORLD));
1586e5c89e4eSSatish Balay     }
15879566063dSJacob Faibussowitsch     PetscCall(PetscOptionsAllUsed(NULL, &nopt));
15883de2bfdfSBarry Smith     if (nopt) {
15899566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PETSC_COMM_WORLD, "WARNING! There are options you set that were not used!\n"));
15909566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PETSC_COMM_WORLD, "WARNING! could be spelling mistake, etc!\n"));
15913de2bfdfSBarry Smith       if (nopt == 1) {
15929566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_WORLD, "There is one unused database option. It is:\n"));
1593e5c89e4eSSatish Balay       } else {
15949566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_WORLD, "There are %" PetscInt_FMT " unused database options. They are:\n", nopt));
1595e5c89e4eSSatish Balay       }
15963de2bfdfSBarry Smith     } else if (flg3 && flg1) {
15979566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PETSC_COMM_WORLD, "There are no unused options.\n"));
1598df12ba86SBarry Smith     }
15999566063dSJacob Faibussowitsch     PetscCall(PetscOptionsLeft(NULL));
1600e5c89e4eSSatish Balay   }
1601e5c89e4eSSatish Balay 
1602e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS)
1603d45a07a7SBarry Smith   if (!PetscGlobalRank) {
16049566063dSJacob Faibussowitsch     PetscCall(PetscStackSAWsViewOff());
1605792fecdfSBarry Smith     PetscCallSAWs(SAWs_Finalize, ());
1606d45a07a7SBarry Smith   }
1607ec957eceSBarry Smith #endif
1608ec957eceSBarry Smith 
160910463e74SBarry Smith   /*
1610dbc8283eSBarry Smith        List all objects the user may have forgot to free
16112eff7a51SBarry Smith   */
16122611ad71SToby Isaac   if (PetscDefined(USE_LOG) && PetscObjectsLog) {
16139566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(NULL, NULL, "-objects_dump", &flg1));
1614a64a8e02SBarry Smith     if (flg1) {
1615a64a8e02SBarry Smith       MPI_Comm local_comm;
16167eb1d149SBarry Smith       char     string[64];
1617a64a8e02SBarry Smith 
16189566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetString(NULL, NULL, "-objects_dump", string, sizeof(string), NULL));
1619afd7ed4bSMatthew G. Knepley       PetscCallMPI(MPI_Comm_dup(PETSC_COMM_WORLD, &local_comm));
16209566063dSJacob Faibussowitsch       PetscCall(PetscSequentialPhaseBegin_Private(local_comm, 1));
16219566063dSJacob Faibussowitsch       PetscCall(PetscObjectsDump(stdout, (string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE));
16229566063dSJacob Faibussowitsch       PetscCall(PetscSequentialPhaseEnd_Private(local_comm, 1));
16239566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_free(&local_comm));
16240a1571b3SBarry Smith     }
162505df10baSBarry Smith   }
16264097062eSBarry Smith 
1627dbc8283eSBarry Smith   PetscObjectsCounts    = 0;
1628dbc8283eSBarry Smith   PetscObjectsMaxCounts = 0;
16299566063dSJacob Faibussowitsch   PetscCall(PetscFree(PetscObjects));
16302eff7a51SBarry Smith 
163133f85c2fSBarry Smith   /*
163233f85c2fSBarry Smith      Destroy any packages that registered a finalize
163333f85c2fSBarry Smith   */
16349566063dSJacob Faibussowitsch   PetscCall(PetscRegisterFinalizeAll());
163533f85c2fSBarry Smith 
16369566063dSJacob Faibussowitsch   PetscCall(PetscLogFinalize());
1637101409b8SToby Isaac 
163833f85c2fSBarry Smith   /*
163948dd1dffSBarry Smith      Print PetscFunctionLists that have not been properly freed
164048dd1dffSBarry Smith   */
16412e956fe4SStefano Zampini   if (PetscPrintFunctionList) PetscCall(PetscFunctionListPrintAll());
164237e93019SBarry Smith 
16434028d114SSatish Balay   if (petsc_history) {
16449566063dSJacob Faibussowitsch     PetscCall(PetscCloseHistoryFile(&petsc_history));
164502c9f0b5SLisandro Dalcin     petsc_history = NULL;
1646e5c89e4eSSatish Balay   }
16479566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton));
16489566063dSJacob Faibussowitsch   PetscCall(PetscInfoDestroy());
1649e5c89e4eSSatish Balay 
165067584ceeSBarry Smith #if !defined(PETSC_HAVE_THREADSAFETY)
165192f119d6SBarry Smith   if (!(PETSC_RUNNING_ON_VALGRIND)) {
1652e5c89e4eSSatish Balay     char  fname[PETSC_MAX_PATH_LEN];
165392f119d6SBarry Smith     char  sname[PETSC_MAX_PATH_LEN];
1654e5c89e4eSSatish Balay     FILE *fd;
1655ed9cf6e9SBarry Smith     int   err;
1656e5c89e4eSSatish Balay 
1657dc92acbaSJed Brown     flg2 = PETSC_FALSE;
165892f119d6SBarry Smith     flg3 = PETSC_FALSE;
16599566063dSJacob Faibussowitsch     if (PetscDefined(USE_DEBUG)) PetscCall(PetscOptionsGetBool(NULL, NULL, "-malloc_test", &flg2, NULL));
16609566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetBool(NULL, NULL, "-malloc_debug", &flg3, NULL));
166192f119d6SBarry Smith     fname[0] = 0;
16629566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-malloc_dump", fname, sizeof(fname), &flg1));
1663e5c89e4eSSatish Balay     if (flg1 && fname[0]) {
16643ba16761SJacob Faibussowitsch       PetscCall(PetscSNPrintf(sname, sizeof(sname), "%s_%d", fname, rank));
16659371c9d4SSatish Balay       fd = fopen(sname, "w");
16669371c9d4SSatish Balay       PetscCheck(fd, PETSC_COMM_SELF, PETSC_ERR_FILE_OPEN, "Cannot open log file: %s", sname);
16679566063dSJacob Faibussowitsch       PetscCall(PetscMallocDump(fd));
1668ed9cf6e9SBarry Smith       err = fclose(fd);
166928b400f6SJacob Faibussowitsch       PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_SYS, "fclose() failed on file");
167092f119d6SBarry Smith     } else if (flg1 || flg2 || flg3) {
1671e5c89e4eSSatish Balay       MPI_Comm local_comm;
1672e5c89e4eSSatish Balay 
1673afd7ed4bSMatthew G. Knepley       PetscCallMPI(MPI_Comm_dup(PETSC_COMM_WORLD, &local_comm));
16749566063dSJacob Faibussowitsch       PetscCall(PetscSequentialPhaseBegin_Private(local_comm, 1));
16759566063dSJacob Faibussowitsch       PetscCall(PetscMallocDump(stdout));
16769566063dSJacob Faibussowitsch       PetscCall(PetscSequentialPhaseEnd_Private(local_comm, 1));
16779566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_free(&local_comm));
1678e5c89e4eSSatish Balay     }
1679e5c89e4eSSatish Balay     fname[0] = 0;
16809566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-malloc_view", fname, sizeof(fname), &flg1));
1681e5c89e4eSSatish Balay     if (flg1 && fname[0]) {
16823ba16761SJacob Faibussowitsch       PetscCall(PetscSNPrintf(sname, sizeof(sname), "%s_%d", fname, rank));
16839371c9d4SSatish Balay       fd = fopen(sname, "w");
16849371c9d4SSatish Balay       PetscCheck(fd, PETSC_COMM_SELF, PETSC_ERR_FILE_OPEN, "Cannot open log file: %s", sname);
16859566063dSJacob Faibussowitsch       PetscCall(PetscMallocView(fd));
1686ed9cf6e9SBarry Smith       err = fclose(fd);
168728b400f6SJacob Faibussowitsch       PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_SYS, "fclose() failed on file");
168892f119d6SBarry Smith     } else if (flg1) {
168992f119d6SBarry Smith       MPI_Comm local_comm;
169092f119d6SBarry Smith 
1691afd7ed4bSMatthew G. Knepley       PetscCallMPI(MPI_Comm_dup(PETSC_COMM_WORLD, &local_comm));
16929566063dSJacob Faibussowitsch       PetscCall(PetscSequentialPhaseBegin_Private(local_comm, 1));
16939566063dSJacob Faibussowitsch       PetscCall(PetscMallocView(stdout));
16949566063dSJacob Faibussowitsch       PetscCall(PetscSequentialPhaseEnd_Private(local_comm, 1));
16959566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_free(&local_comm));
1696e5c89e4eSSatish Balay     }
1697e5c89e4eSSatish Balay   }
169867584ceeSBarry Smith #endif
169920e2c332SMatthew G. Knepley 
17005486ca60SMatthew G. Knepley   /*
17015486ca60SMatthew G. Knepley      Close any open dynamic libraries
17025486ca60SMatthew G. Knepley   */
17039566063dSJacob Faibussowitsch   PetscCall(PetscFinalize_DynamicLibraries());
17045486ca60SMatthew G. Knepley 
1705e5c89e4eSSatish Balay   /* Can be destroyed only after all the options are used */
17069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsDestroyDefault());
1707e5c89e4eSSatish Balay 
170871438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM)
170971438e86SJunchao Zhang   if (PetscBeganNvshmem) {
17109566063dSJacob Faibussowitsch     PetscCall(PetscNvshmemFinalize());
171171438e86SJunchao Zhang     PetscBeganNvshmem = PETSC_FALSE;
171271438e86SJunchao Zhang   }
171371438e86SJunchao Zhang #endif
1714a0e72f99SJunchao Zhang 
17159566063dSJacob Faibussowitsch   PetscCall(PetscFreeMPIResources());
1716e5c89e4eSSatish Balay 
1717dbc8283eSBarry Smith   /*
1718efb80d3cSBarry Smith      Destroy any known inner MPI_Comm's and attributes pointing to them
1719efb80d3cSBarry Smith      Note this will not destroy any new communicators the user has created.
1720efb80d3cSBarry Smith 
1721efb80d3cSBarry Smith      If all PETSc objects were not destroyed those left over objects will have hanging references to
1722efb80d3cSBarry Smith      the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again
1723dbc8283eSBarry Smith  */
1724b770b1f6SSatish Balay   {
1725dbc8283eSBarry Smith     PetscCommCounter *counter;
1726dbc8283eSBarry Smith     PetscMPIInt       flg;
1727dbc8283eSBarry Smith     MPI_Comm          icomm;
17289371c9d4SSatish Balay     union
17299371c9d4SSatish Balay     {
17309371c9d4SSatish Balay       MPI_Comm comm;
17319371c9d4SSatish Balay       void    *ptr;
17329371c9d4SSatish Balay     } ucomm;
17339566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_SELF, Petsc_InnerComm_keyval, &ucomm, &flg));
1734dbc8283eSBarry Smith     if (flg) {
1735265f3f35SJed Brown       icomm = ucomm.comm;
17369566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Counter_keyval, &counter, &flg));
173728b400f6SJacob Faibussowitsch       PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory");
1738dbc8283eSBarry Smith 
17399566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_delete_attr(PETSC_COMM_SELF, Petsc_InnerComm_keyval));
17409566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_delete_attr(icomm, Petsc_Counter_keyval));
17419566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_free(&icomm));
1742dbc8283eSBarry Smith     }
17439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_WORLD, Petsc_InnerComm_keyval, &ucomm, &flg));
1744dbc8283eSBarry Smith     if (flg) {
1745265f3f35SJed Brown       icomm = ucomm.comm;
17469566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Counter_keyval, &counter, &flg));
174728b400f6SJacob Faibussowitsch       PetscCheck(flg, PETSC_COMM_WORLD, PETSC_ERR_ARG_CORRUPT, "Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory");
1748dbc8283eSBarry Smith 
17499566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_delete_attr(PETSC_COMM_WORLD, Petsc_InnerComm_keyval));
17509566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_delete_attr(icomm, Petsc_Counter_keyval));
17519566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_free(&icomm));
1752dbc8283eSBarry Smith     }
1753b770b1f6SSatish Balay   }
1754dbc8283eSBarry Smith 
17559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_free_keyval(&Petsc_Counter_keyval));
17569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_free_keyval(&Petsc_InnerComm_keyval));
17579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_free_keyval(&Petsc_OuterComm_keyval));
17589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_free_keyval(&Petsc_ShmComm_keyval));
175962e5d2d2SJDBetteridge   PetscCallMPI(MPI_Comm_free_keyval(&Petsc_CreationIdx_keyval));
176062e5d2d2SJDBetteridge   PetscCallMPI(MPI_Comm_free_keyval(&Petsc_Garbage_HMap_keyval));
1761480cf27aSJed Brown 
17625ea2b939SDuncan Campbell   // Free keyvals which may be silently created by some routines
17635ea2b939SDuncan Campbell   if (Petsc_SharedWD_keyval != MPI_KEYVAL_INVALID) PetscCallMPI(MPI_Comm_free_keyval(&Petsc_SharedWD_keyval));
17645ea2b939SDuncan Campbell   if (Petsc_SharedTmp_keyval != MPI_KEYVAL_INVALID) PetscCallMPI(MPI_Comm_free_keyval(&Petsc_SharedTmp_keyval));
17655ea2b939SDuncan Campbell 
17669566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen));
17679566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout));
17689566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr));
17699566063dSJacob Faibussowitsch   PetscCall(PetscSpinlockDestroy(&PetscCommSpinLock));
1770ef19f930SBarry Smith 
1771e5c89e4eSSatish Balay   if (PetscBeganMPI) {
177299b1327fSBarry Smith     PetscMPIInt flag;
17739566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Finalized(&flag));
177439a651e2SJacob Faibussowitsch     PetscCheck(!flag, PETSC_COMM_SELF, PETSC_ERR_LIB, "MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()");
177539a651e2SJacob Faibussowitsch     /* wait until the very last moment to disable error handling */
177639a651e2SJacob Faibussowitsch     PetscErrorHandlingInitialized = PETSC_FALSE;
17779566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Finalize());
177839a651e2SJacob Faibussowitsch   } else PetscErrorHandlingInitialized = PETSC_FALSE;
177939a651e2SJacob Faibussowitsch 
1780e5c89e4eSSatish Balay   /*
1781e5c89e4eSSatish Balay 
1782e5c89e4eSSatish Balay      Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because
1783e5c89e4eSSatish Balay    the communicator has some outstanding requests on it. Specifically if the
1784e5c89e4eSSatish Balay    flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See
1785e5c89e4eSSatish Balay    src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate()
1786e5c89e4eSSatish Balay    is never freed as it should be. Thus one may obtain messages of the form
17870e5e90baSSatish Balay    [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the
1788e5c89e4eSSatish Balay    memory was not freed.
1789e5c89e4eSSatish Balay 
1790e5c89e4eSSatish Balay */
17919566063dSJacob Faibussowitsch   PetscCall(PetscMallocClear());
17929566063dSJacob Faibussowitsch   PetscCall(PetscStackReset());
1793a297a907SKarl Rupp 
1794e5c89e4eSSatish Balay   PetscInitializeCalled = PETSC_FALSE;
1795e5c89e4eSSatish Balay   PetscFinalizeCalled   = PETSC_TRUE;
17967ce81a4bSJacob Faibussowitsch #if defined(PETSC_USE_COVERAGE)
179756883f60SBarry Smith   /*
179856883f60SBarry Smith      flush gcov, otherwise during CI the flushing continues into the next pipeline resulting in git not being able to delete directories since the
179956883f60SBarry Smith      gcov files are still being added to the directories as git tries to remove the directories.
180056883f60SBarry Smith    */
180156883f60SBarry Smith   __gcov_flush();
180256883f60SBarry Smith #endif
18031724198aSStefano Zampini   /* To match PetscFunctionBegin() at the beginning of this function */
18041724198aSStefano Zampini   PetscStackClearTop;
18053ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
1806e5c89e4eSSatish Balay }
1807e5c89e4eSSatish Balay 
180843db4dbbSBarry Smith #if defined(PETSC_MISSING_LAPACK_lsame_)
1809d71ae5a4SJacob Faibussowitsch PETSC_EXTERN int lsame_(char *a, char *b)
1810d71ae5a4SJacob Faibussowitsch {
181143db4dbbSBarry Smith   if (*a == *b) return 1;
181243db4dbbSBarry Smith   if (*a + 32 == *b) return 1;
181343db4dbbSBarry Smith   if (*a - 32 == *b) return 1;
181443db4dbbSBarry Smith   return 0;
181543db4dbbSBarry Smith }
1816a70650f6SBarry Smith #endif
181743db4dbbSBarry Smith 
181843db4dbbSBarry Smith #if defined(PETSC_MISSING_LAPACK_lsame)
1819d71ae5a4SJacob Faibussowitsch PETSC_EXTERN int lsame(char *a, char *b)
1820d71ae5a4SJacob Faibussowitsch {
182143db4dbbSBarry Smith   if (*a == *b) return 1;
182243db4dbbSBarry Smith   if (*a + 32 == *b) return 1;
182343db4dbbSBarry Smith   if (*a - 32 == *b) return 1;
182443db4dbbSBarry Smith   return 0;
182543db4dbbSBarry Smith }
182643db4dbbSBarry Smith #endif
18276a210b70SBarry Smith 
1828462c564dSBarry Smith static inline PetscMPIInt MPIU_Allreduce_Count(const void *inbuf, void *outbuf, MPIU_Count count, MPI_Datatype dtype, MPI_Op op, MPI_Comm comm)
18296a210b70SBarry Smith {
1830462c564dSBarry Smith   PetscMPIInt err;
18316a210b70SBarry Smith #if !defined(PETSC_HAVE_MPI_LARGE_COUNT)
18326a210b70SBarry Smith   PetscMPIInt count2;
18336a210b70SBarry Smith 
1834462c564dSBarry Smith   PetscMPIIntCast_Internal(count, &count2);
1835462c564dSBarry Smith   err = MPI_Allreduce((void *)inbuf, outbuf, count2, dtype, op, comm);
18366a210b70SBarry Smith #else
1837462c564dSBarry Smith   err = MPI_Allreduce_c((void *)inbuf, outbuf, count, dtype, op, comm);
18386a210b70SBarry Smith #endif
1839462c564dSBarry Smith   return err;
18406a210b70SBarry Smith }
18416a210b70SBarry Smith 
1842462c564dSBarry Smith /*
1843462c564dSBarry Smith      When count is 1 and dtype == MPIU_INT performs the reduction in PetscInt64 to check for integer overflow
1844462c564dSBarry Smith */
1845462c564dSBarry Smith PetscMPIInt MPIU_Allreduce_Private(const void *inbuf, void *outbuf, MPIU_Count count, MPI_Datatype dtype, MPI_Op op, MPI_Comm comm)
18466a210b70SBarry Smith {
1847462c564dSBarry Smith   PetscMPIInt err;
18482711dd09SLisandro Dalcin   if (!PetscDefined(USE_64BIT_INDICES) && count == 1 && dtype == MPIU_INT && (op == MPI_SUM || op == MPI_PROD)) {
1849462c564dSBarry Smith     PetscInt64 incnt, outcnt;
18506a210b70SBarry Smith     void      *inbufd, *outbufd;
18516a210b70SBarry Smith 
18526a210b70SBarry Smith     if (inbuf != MPI_IN_PLACE) {
18536a210b70SBarry Smith       incnt  = *(PetscInt32 *)inbuf;
18546a210b70SBarry Smith       inbufd = &incnt;
18556a210b70SBarry Smith     } else {
18566a210b70SBarry Smith       outcnt = *(PetscInt32 *)outbuf;
18576a210b70SBarry Smith       inbufd = (void *)MPI_IN_PLACE;
18586a210b70SBarry Smith     }
18596a210b70SBarry Smith     outbufd = &outcnt;
1860462c564dSBarry Smith     err     = MPIU_Allreduce_Count(inbufd, outbufd, count, MPIU_INT64, op, comm);
1861462c564dSBarry Smith     if (!err && outcnt > PETSC_INT_MAX) err = MPI_ERR_OTHER;
18626a210b70SBarry Smith     *(PetscInt32 *)outbuf = (PetscInt32)outcnt;
18636a210b70SBarry Smith   } else {
1864462c564dSBarry Smith     err = MPIU_Allreduce_Count(inbuf, outbuf, count, dtype, op, comm);
18656a210b70SBarry Smith   }
1866462c564dSBarry Smith   return err;
18676a210b70SBarry Smith }
1868*49abdd8aSBarry Smith 
1869*49abdd8aSBarry Smith /*@C
1870*49abdd8aSBarry Smith   PetscCtxDestroyDefault - An implementation of a `PetscCtxDestroyFn` that uses `PetscFree()` to free the context
1871*49abdd8aSBarry Smith 
1872*49abdd8aSBarry Smith   Input Parameter:
1873*49abdd8aSBarry Smith . ctx - the context to be destroyed
1874*49abdd8aSBarry Smith 
1875*49abdd8aSBarry Smith   Level: intermediate
1876*49abdd8aSBarry Smith 
1877*49abdd8aSBarry Smith   Note:
1878*49abdd8aSBarry Smith   This is not called directly, rather it is passed to `DMSetApplicationContextDestroy()`, `PetscContainerSetDestroy()`,
1879*49abdd8aSBarry Smith   `PetscObjectContainterCreate()` and similar routines and then called by the destructor of the associated object.
1880*49abdd8aSBarry Smith 
1881*49abdd8aSBarry Smith .seealso: `PetscObject`, `PetscCtxDestroyFn`, `PetscObjectDestroy()`, `DMSetApplicationContextDestroy()`,  `PetscContainerSetDestroy()`,
1882*49abdd8aSBarry Smith            `PetscObjectContainterCreate()`
1883*49abdd8aSBarry Smith @*/
1884*49abdd8aSBarry Smith PETSC_EXTERN PetscErrorCode PetscCtxDestroyDefault(void **ctx)
1885*49abdd8aSBarry Smith {
1886*49abdd8aSBarry Smith   PetscFunctionBegin;
1887*49abdd8aSBarry Smith   PetscCall(PetscFree(*ctx));
1888*49abdd8aSBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
1889*49abdd8aSBarry Smith }
1890