1bc8a24ecSBarry Smith #define PETSC_DESIRE_FEATURE_TEST_MACROS 2e5c89e4eSSatish Balay /* 3e5c89e4eSSatish Balay This file defines the initialization of PETSc, including PetscInitialize() 4e5c89e4eSSatish Balay */ 5af0996ceSBarry Smith #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6473903fcSJunchao Zhang #include <petsc/private/logimpl.h> 7665c2dedSJed Brown #include <petscviewer.h> 862e5d2d2SJDBetteridge #include <petsc/private/garbagecollector.h> 9a0e72f99SJunchao Zhang 106edef35eSSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 116edef35eSSatish Balay #include <petsc/private/valgrind/valgrind.h> 126edef35eSSatish Balay #endif 136edef35eSSatish Balay 14fbf9dbe5SBarry Smith #if defined(PETSC_USE_FORTRAN_BINDINGS) 1585649d77SJunchao Zhang #include <petsc/private/fortranimpl.h> 1685649d77SJunchao Zhang #endif 1785649d77SJunchao Zhang 187ce81a4bSJacob Faibussowitsch #if PetscDefined(USE_COVERAGE) 1956883f60SBarry Smith EXTERN_C_BEGIN 20aaf3846cSSatish Balay #if defined(PETSC_HAVE___GCOV_DUMP) 21aaf3846cSSatish Balay #define __gcov_flush(x) __gcov_dump(x) 22aaf3846cSSatish Balay #endif 2356883f60SBarry Smith void __gcov_flush(void); 2456883f60SBarry Smith EXTERN_C_END 2556883f60SBarry Smith #endif 268101f56cSMatthew Knepley 272d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS) 2895c0884eSLisandro Dalcin PETSC_INTERN PetscFPT PetscFPTData; 292d53ad75SBarry Smith PetscFPT PetscFPTData = 0; 302d53ad75SBarry Smith #endif 312d53ad75SBarry Smith 3227104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_SAWS) 3316ad0300SBarry Smith #include <petscviewersaws.h> 34a6790183SBarry Smith #endif 35eb02082bSJunchao Zhang 3695c0884eSLisandro Dalcin PETSC_INTERN FILE *petsc_history; 37e5c89e4eSSatish Balay 3895c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 3995c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 4095c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm, int); 4195c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm, int); 4295c0884eSLisandro Dalcin PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE **); 430069ddf5SShri Abhyankar 446de5d289SStefano Zampini /* user may set these BEFORE calling PetscInitialize() */ 45e8373e55SMatthew Knepley MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 4627104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_MPI_INIT_THREAD) 47835d5ba2SJunchao Zhang PetscMPIInt PETSC_MPI_THREAD_REQUIRED = PETSC_DECIDE; 486de5d289SStefano Zampini #else 49835d5ba2SJunchao Zhang PetscMPIInt PETSC_MPI_THREAD_REQUIRED = MPI_THREAD_SINGLE; 506de5d289SStefano Zampini #endif 51e5c89e4eSSatish Balay 52480cf27aSJed Brown PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 53480cf27aSJed Brown PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 54480cf27aSJed Brown PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 555f7487a0SJunchao Zhang PetscMPIInt Petsc_ShmComm_keyval = MPI_KEYVAL_INVALID; 5662e5d2d2SJDBetteridge PetscMPIInt Petsc_CreationIdx_keyval = MPI_KEYVAL_INVALID; 5762e5d2d2SJDBetteridge PetscMPIInt Petsc_Garbage_HMap_keyval = MPI_KEYVAL_INVALID; 58480cf27aSJed Brown 595ea2b939SDuncan Campbell PetscMPIInt Petsc_SharedWD_keyval = MPI_KEYVAL_INVALID; 605ea2b939SDuncan Campbell PetscMPIInt Petsc_SharedTmp_keyval = MPI_KEYVAL_INVALID; 615ea2b939SDuncan Campbell 62e5c89e4eSSatish Balay /* 63e5c89e4eSSatish Balay Declare and set all the string names of the PETSc enums 64e5c89e4eSSatish Balay */ 6502c9f0b5SLisandro Dalcin const char *const PetscBools[] = {"FALSE", "TRUE", "PetscBool", "PETSC_", NULL}; 6602c9f0b5SLisandro Dalcin const char *const PetscCopyModes[] = {"COPY_VALUES", "OWN_POINTER", "USE_POINTER", "PetscCopyMode", "PETSC_", NULL}; 67e5c89e4eSSatish Balay 68ace3abfcSBarry Smith PetscBool PetscPreLoadingUsed = PETSC_FALSE; 69ace3abfcSBarry Smith PetscBool PetscPreLoadingOn = PETSC_FALSE; 700f8e0872SSatish Balay 71a2f94806SJed Brown PetscInt PetscHotRegionDepth; 72a2f94806SJed Brown 736edef35eSSatish Balay PetscBool PETSC_RUNNING_ON_VALGRIND = PETSC_FALSE; 746edef35eSSatish Balay 75b22622e2STadeu Manoel #if defined(PETSC_HAVE_THREADSAFETY) 76b22622e2STadeu Manoel PetscSpinlock PetscViewerASCIISpinLockOpen; 77b22622e2STadeu Manoel PetscSpinlock PetscViewerASCIISpinLockStdout; 78b22622e2STadeu Manoel PetscSpinlock PetscViewerASCIISpinLockStderr; 79b22622e2STadeu Manoel PetscSpinlock PetscCommSpinLock; 80b22622e2STadeu Manoel #endif 81b22622e2STadeu Manoel 82046ed546SBarry Smith extern PetscInt PetscNumBLASThreads; 83046ed546SBarry Smith 84aec76313SJacob Faibussowitsch /*@C 85945d1669SBarry Smith PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 8672a42c3cSBarry Smith 87cc4c1da9SBarry Smith Collective, No Fortran Support 8872a42c3cSBarry Smith 8910450e9eSJacob Faibussowitsch Input Parameters: 9010450e9eSJacob Faibussowitsch + argc - number of args 9110450e9eSJacob Faibussowitsch . args - array of command line arguments 9210450e9eSJacob Faibussowitsch . filename - optional name of the program file, pass `NULL` to ignore 9310450e9eSJacob Faibussowitsch - help - optional help, pass `NULL` to ignore 9410450e9eSJacob Faibussowitsch 9572a42c3cSBarry Smith Level: advanced 9672a42c3cSBarry Smith 9795452b02SPatrick Sanan Notes: 98a56f64adSBarry Smith this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to 99a3b724e8SBarry Smith indicate that it did NOT start MPI so that the `PetscFinalize()` does not end MPI, thus allowing `PetscInitialize()` to 100a56f64adSBarry Smith be called multiple times from Julia without the problem of trying to initialize MPI more than once. 1010f11a792SBarry Smith 10210450e9eSJacob Faibussowitsch Developer Notes: 10310450e9eSJacob Faibussowitsch Turns off PETSc signal handling to allow Julia to manage signals 1041ea5a559SBarry Smith 105db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeFortran()`, `PetscInitializeNoArguments()` 1060f11a792SBarry Smith */ 107d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitializeNoPointers(int argc, char **args, const char *filename, const char *help) 108d71ae5a4SJacob Faibussowitsch { 10972a42c3cSBarry Smith int myargc = argc; 11072a42c3cSBarry Smith char **myargs = args; 11172a42c3cSBarry Smith 11272a42c3cSBarry Smith PetscFunctionBegin; 1139566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&myargc, &myargs, filename, help)); 1149566063dSJacob Faibussowitsch PetscCall(PetscPopSignalHandler()); 115df413903SBarry Smith PetscBeganMPI = PETSC_FALSE; 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11772a42c3cSBarry Smith } 11872a42c3cSBarry Smith 119e5c89e4eSSatish Balay /*@C 120811af0c4SBarry Smith PetscInitializeNoArguments - Calls `PetscInitialize()` from C/C++ without 121e5c89e4eSSatish Balay the command line arguments. 122e5c89e4eSSatish Balay 123e5c89e4eSSatish Balay Collective 124e5c89e4eSSatish Balay 125e5c89e4eSSatish Balay Level: advanced 126e5c89e4eSSatish Balay 127db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeFortran()` 128e5c89e4eSSatish Balay @*/ 129d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitializeNoArguments(void) 130d71ae5a4SJacob Faibussowitsch { 131e5c89e4eSSatish Balay int argc = 0; 13202c9f0b5SLisandro Dalcin char **args = NULL; 133e5c89e4eSSatish Balay 134e5c89e4eSSatish Balay PetscFunctionBegin; 1359566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &args, NULL, NULL)); 1363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 137e5c89e4eSSatish Balay } 138e5c89e4eSSatish Balay 139e5c89e4eSSatish Balay /*@ 140e5c89e4eSSatish Balay PetscInitialized - Determine whether PETSc is initialized. 141e5c89e4eSSatish Balay 14210450e9eSJacob Faibussowitsch Output Parameter: 14310450e9eSJacob Faibussowitsch . isInitialized - `PETSC_TRUE` if PETSc is initialized, `PETSC_FALSE` otherwise 14410450e9eSJacob Faibussowitsch 14593b6d2d1SJed Brown Level: beginner 146e5c89e4eSSatish Balay 147db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeNoArguments()`, `PetscInitializeFortran()` 148e5c89e4eSSatish Balay @*/ 149d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitialized(PetscBool *isInitialized) 150d71ae5a4SJacob Faibussowitsch { 15127104ee2SJacob Faibussowitsch PetscFunctionBegin; 1524f572ea9SToby Isaac if (PetscInitializeCalled) PetscAssertPointer(isInitialized, 1); 153e5c89e4eSSatish Balay *isInitialized = PetscInitializeCalled; 1543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 155e5c89e4eSSatish Balay } 156e5c89e4eSSatish Balay 157e5c89e4eSSatish Balay /*@ 158811af0c4SBarry Smith PetscFinalized - Determine whether `PetscFinalize()` has been called yet 159e5c89e4eSSatish Balay 16010450e9eSJacob Faibussowitsch Output Parameter: 16110450e9eSJacob Faibussowitsch . isFinalized - `PETSC_TRUE` if PETSc is finalized, `PETSC_FALSE` otherwise 16210450e9eSJacob Faibussowitsch 163e5c89e4eSSatish Balay Level: developer 164e5c89e4eSSatish Balay 165db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscInitializeNoArguments()`, `PetscInitializeFortran()` 166e5c89e4eSSatish Balay @*/ 167d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFinalized(PetscBool *isFinalized) 168d71ae5a4SJacob Faibussowitsch { 16927104ee2SJacob Faibussowitsch PetscFunctionBegin; 1704f572ea9SToby Isaac if (!PetscFinalizeCalled) PetscAssertPointer(isFinalized, 1); 171e5c89e4eSSatish Balay *isFinalized = PetscFinalizeCalled; 1723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 173e5c89e4eSSatish Balay } 174e5c89e4eSSatish Balay 17557171095SVaclav Hapla PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(const char[]); 176e5c89e4eSSatish Balay 177e5c89e4eSSatish Balay /* 178e5c89e4eSSatish Balay This function is the MPI reduction operation used to compute the sum of the 179e5c89e4eSSatish Balay first half of the datatype and the max of the second half. 180e5c89e4eSSatish Balay */ 181367daffbSBarry Smith MPI_Op MPIU_MAXSUM_OP = 0; 18262e5d2d2SJDBetteridge MPI_Op Petsc_Garbage_SetIntersectOp = 0; 183e5c89e4eSSatish Balay 1846497c311SBarry Smith PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype) 185d71ae5a4SJacob Faibussowitsch { 186e5c89e4eSSatish Balay PetscFunctionBegin; 1876497c311SBarry Smith if (*datatype == MPIU_INT_MPIINT && PetscDefined(USE_64BIT_INDICES)) { 1886497c311SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 1896497c311SBarry Smith struct petsc_mpiu_int_mpiint *xin = (struct petsc_mpiu_int_mpiint *)in, *xout = (struct petsc_mpiu_int_mpiint *)out; 1906497c311SBarry Smith PetscMPIInt count = *cnt; 191e5c89e4eSSatish Balay 1926497c311SBarry Smith for (PetscMPIInt i = 0; i < count; i++) { 1936497c311SBarry Smith xout[i].a = PetscMax(xout[i].a, xin[i].a); 1946497c311SBarry Smith xout[i].b += xin[i].b; 1956497c311SBarry Smith } 1966497c311SBarry Smith #endif 1976497c311SBarry Smith } else if (*datatype == MPIU_2INT || *datatype == MPIU_INT_MPIINT) { 1986497c311SBarry Smith PetscInt *xin = (PetscInt *)in, *xout = (PetscInt *)out; 1996497c311SBarry Smith PetscMPIInt count = *cnt; 2006497c311SBarry Smith 2016497c311SBarry Smith for (PetscMPIInt i = 0; i < count; i++) { 202e5c89e4eSSatish Balay xout[2 * i] = PetscMax(xout[2 * i], xin[2 * i]); 203e5c89e4eSSatish Balay xout[2 * i + 1] += xin[2 * i + 1]; 204e5c89e4eSSatish Balay } 2056497c311SBarry Smith } else { 2066497c311SBarry Smith PetscErrorCode ierr = (*PetscErrorPrintf)("Can only handle MPIU_2INT and MPIU_INT_MPIINT data types"); 2076497c311SBarry Smith (void)ierr; 2086497c311SBarry Smith PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG); 2096497c311SBarry Smith } 210812af9f3SBarry Smith PetscFunctionReturnVoid(); 211e5c89e4eSSatish Balay } 212e5c89e4eSSatish Balay 2136497c311SBarry Smith /*@ 2146497c311SBarry Smith PetscMaxSum - Returns the max of the first entry over all MPI processes and the sum of the second entry. 215b693b147SBarry Smith 2166497c311SBarry Smith Collective 2176497c311SBarry Smith 2186497c311SBarry Smith Input Parameters: 2196497c311SBarry Smith + comm - the communicator 2206497c311SBarry Smith - array - an arry of length 2 times `size`, the number of MPI processes 2216497c311SBarry Smith 2226497c311SBarry Smith Output Parameters: 2236497c311SBarry Smith + max - the maximum of `array[2*rank]` over all MPI processes 2246497c311SBarry Smith - sum - the sum of the `array[2*rank + 1]` over all MPI processes 2256497c311SBarry Smith 2266497c311SBarry Smith Level: developer 2276497c311SBarry Smith 2286497c311SBarry Smith .seealso: `PetscInitialize()` 2296497c311SBarry Smith @*/ 2306497c311SBarry Smith PetscErrorCode PetscMaxSum(MPI_Comm comm, const PetscInt array[], PetscInt *max, PetscInt *sum) 231d71ae5a4SJacob Faibussowitsch { 232e5c89e4eSSatish Balay PetscFunctionBegin; 233d6e4c47cSJed Brown #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 234d6e4c47cSJed Brown { 2359371c9d4SSatish Balay struct { 2369371c9d4SSatish Balay PetscInt max, sum; 2379371c9d4SSatish Balay } work; 2386497c311SBarry Smith PetscCallMPI(MPI_Reduce_scatter_block((void *)array, &work, 1, MPIU_2INT, MPIU_MAXSUM_OP, comm)); 239d6e4c47cSJed Brown *max = work.max; 240d6e4c47cSJed Brown *sum = work.sum; 241d6e4c47cSJed Brown } 242d6e4c47cSJed Brown #else 243d6e4c47cSJed Brown { 244d6e4c47cSJed Brown PetscMPIInt size, rank; 2459371c9d4SSatish Balay struct { 2469371c9d4SSatish Balay PetscInt max, sum; 2479371c9d4SSatish Balay } *work; 2489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 2509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &work)); 251462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce((void *)array, work, size, MPIU_2INT, MPIU_MAXSUM_OP, comm)); 2526ac3741eSJed Brown *max = work[rank].max; 2536ac3741eSJed Brown *sum = work[rank].sum; 2549566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 255d6e4c47cSJed Brown } 256d6e4c47cSJed Brown #endif 2573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 258e5c89e4eSSatish Balay } 259e5c89e4eSSatish Balay 260ef384fdeSPierre Jolivet #if (defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)) || (defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16)) 261ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128) 262613bf2b2SPierre Jolivet #include <quadmath.h> 263613bf2b2SPierre Jolivet #endif 2649e517322SPierre Jolivet MPI_Op MPIU_SUM___FP16___FLOAT128 = 0; 265de272c7aSSatish Balay #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 26606a205a8SBarry Smith MPI_Op MPIU_SUM = 0; 267613bf2b2SPierre Jolivet #endif 268e5c89e4eSSatish Balay 269d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void MPIAPI PetscSum_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype) 270d71ae5a4SJacob Faibussowitsch { 2716497c311SBarry Smith PetscMPIInt i, count = *cnt; 272e5c89e4eSSatish Balay 273e5c89e4eSSatish Balay PetscFunctionBegin; 2747c2de775SJed Brown if (*datatype == MPIU_REAL) { 275e2e03761SBarry Smith PetscReal *xin = (PetscReal *)in, *xout = (PetscReal *)out; 276a297a907SKarl Rupp for (i = 0; i < count; i++) xout[i] += xin[i]; 2777c2de775SJed Brown } 2787c2de775SJed Brown #if defined(PETSC_HAVE_COMPLEX) 279c5481aeeSJose E. Roman else if (*datatype == MPIU_COMPLEX) { 2807c2de775SJed Brown PetscComplex *xin = (PetscComplex *)in, *xout = (PetscComplex *)out; 281a297a907SKarl Rupp for (i = 0; i < count; i++) xout[i] += xin[i]; 2827c2de775SJed Brown } 2837c2de775SJed Brown #endif 284ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128) 285613bf2b2SPierre Jolivet else if (*datatype == MPIU___FLOAT128) { 286613bf2b2SPierre Jolivet __float128 *xin = (__float128 *)in, *xout = (__float128 *)out; 287613bf2b2SPierre Jolivet for (i = 0; i < count; i++) xout[i] += xin[i]; 28874c01ffaSSatish Balay #if defined(PETSC_HAVE_COMPLEX) 2899371c9d4SSatish Balay } else if (*datatype == MPIU___COMPLEX128) { 290613bf2b2SPierre Jolivet __complex128 *xin = (__complex128 *)in, *xout = (__complex128 *)out; 291613bf2b2SPierre Jolivet for (i = 0; i < count; i++) xout[i] += xin[i]; 29274c01ffaSSatish Balay #endif 293613bf2b2SPierre Jolivet } 294613bf2b2SPierre Jolivet #endif 295ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16) 2969e517322SPierre Jolivet else if (*datatype == MPIU___FP16) { 2979e517322SPierre Jolivet __fp16 *xin = (__fp16 *)in, *xout = (__fp16 *)out; 2986497c311SBarry Smith for (i = 0; i < count; i++) xout[i] = (__fp16)(xin[i] + xout[i]); 2999e517322SPierre Jolivet } 3009e517322SPierre Jolivet #endif 3017c2de775SJed Brown else { 302ef384fdeSPierre Jolivet #if (!defined(PETSC_HAVE_REAL___FLOAT128) || defined(PETSC_SKIP_REAL___FLOAT128)) && (!defined(PETSC_HAVE_REAL___FP16) || defined(PETSC_SKIP_REAL___FP16)) 303ef384fdeSPierre Jolivet PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types")); 304ef384fdeSPierre Jolivet #elif !defined(PETSC_HAVE_REAL___FP16) || defined(PETSC_SKIP_REAL___FP16) 3053ba16761SJacob Faibussowitsch PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL, MPIU_COMPLEX, MPIU___FLOAT128, or MPIU___COMPLEX128 data types")); 306ef384fdeSPierre Jolivet #elif !defined(PETSC_HAVE_REAL___FLOAT128) || defined(PETSC_SKIP_REAL___FLOAT128) 3073ba16761SJacob Faibussowitsch PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL, MPIU_COMPLEX, or MPIU___FP16 data types")); 3089e517322SPierre Jolivet #else 3093ba16761SJacob Faibussowitsch PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL, MPIU_COMPLEX, MPIU___FLOAT128, MPIU___COMPLEX128, or MPIU___FP16 data types")); 310613bf2b2SPierre Jolivet #endif 31141e02c4dSJunchao Zhang PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG); 312e2e03761SBarry Smith } 313812af9f3SBarry Smith PetscFunctionReturnVoid(); 314e5c89e4eSSatish Balay } 315e5c89e4eSSatish Balay #endif 316e5c89e4eSSatish Balay 317570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 318d9822059SBarry Smith MPI_Op MPIU_MAX = 0; 319d9822059SBarry Smith MPI_Op MPIU_MIN = 0; 320d9822059SBarry Smith 321d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void MPIAPI PetscMax_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype) 322d71ae5a4SJacob Faibussowitsch { 323d9822059SBarry Smith PetscInt i, count = *cnt; 324d9822059SBarry Smith 325d9822059SBarry Smith PetscFunctionBegin; 3267c2de775SJed Brown if (*datatype == MPIU_REAL) { 3278c764dc5SJose Roman PetscReal *xin = (PetscReal *)in, *xout = (PetscReal *)out; 328a297a907SKarl Rupp for (i = 0; i < count; i++) xout[i] = PetscMax(xout[i], xin[i]); 3297c2de775SJed Brown } 3307c2de775SJed Brown #if defined(PETSC_HAVE_COMPLEX) 3317c2de775SJed Brown else if (*datatype == MPIU_COMPLEX) { 3327c2de775SJed Brown PetscComplex *xin = (PetscComplex *)in, *xout = (PetscComplex *)out; 333ad540459SPierre Jolivet for (i = 0; i < count; i++) xout[i] = PetscRealPartComplex(xout[i]) < PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 3347c2de775SJed Brown } 3357c2de775SJed Brown #endif 3367c2de775SJed Brown else { 3373ba16761SJacob Faibussowitsch PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types")); 33841e02c4dSJunchao Zhang PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG); 3398c764dc5SJose Roman } 340d9822059SBarry Smith PetscFunctionReturnVoid(); 341d9822059SBarry Smith } 342d9822059SBarry Smith 343d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void MPIAPI PetscMin_Local(void *in, void *out, PetscMPIInt *cnt, MPI_Datatype *datatype) 344d71ae5a4SJacob Faibussowitsch { 345d9822059SBarry Smith PetscInt i, count = *cnt; 346d9822059SBarry Smith 347d9822059SBarry Smith PetscFunctionBegin; 3487c2de775SJed Brown if (*datatype == MPIU_REAL) { 3498c764dc5SJose Roman PetscReal *xin = (PetscReal *)in, *xout = (PetscReal *)out; 350a297a907SKarl Rupp for (i = 0; i < count; i++) xout[i] = PetscMin(xout[i], xin[i]); 3517c2de775SJed Brown } 3527c2de775SJed Brown #if defined(PETSC_HAVE_COMPLEX) 3537c2de775SJed Brown else if (*datatype == MPIU_COMPLEX) { 3547c2de775SJed Brown PetscComplex *xin = (PetscComplex *)in, *xout = (PetscComplex *)out; 355ad540459SPierre Jolivet for (i = 0; i < count; i++) xout[i] = PetscRealPartComplex(xout[i]) > PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 3567c2de775SJed Brown } 3577c2de775SJed Brown #endif 3587c2de775SJed Brown else { 3593ba16761SJacob Faibussowitsch PetscCallAbort(MPI_COMM_SELF, (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types")); 36041e02c4dSJunchao Zhang PETSCABORT(MPI_COMM_SELF, PETSC_ERR_ARG_WRONG); 3618c764dc5SJose Roman } 362d9822059SBarry Smith PetscFunctionReturnVoid(); 363d9822059SBarry Smith } 364d9822059SBarry Smith #endif 365d9822059SBarry Smith 366480cf27aSJed Brown /* 367480cf27aSJed Brown Private routine to delete internal tag/name counter storage when a communicator is freed. 368480cf27aSJed Brown 369ff0e51ddSBarry Smith This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 370480cf27aSJed Brown 37112801b39SBarry Smith Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 372480cf27aSJed Brown 373480cf27aSJed Brown */ 3748434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_Counter_Attr_DeleteFn(MPI_Comm comm, PetscMPIInt keyval, void *count_val, void *extra_state) 375d71ae5a4SJacob Faibussowitsch { 37605342407SJunchao Zhang PetscCommCounter *counter = (PetscCommCounter *)count_val; 37757f21012SBarry Smith struct PetscCommStash *comms = counter->comms, *pcomm; 378480cf27aSJed Brown 379480cf27aSJed Brown PetscFunctionBegin; 3807c5b2466SBarry Smith PetscCallReturnMPI(PetscInfo(NULL, "Deleting counter data in an MPI_Comm %ld\n", (long)comm)); 3817c5b2466SBarry Smith PetscCallReturnMPI(PetscFree(counter->iflags)); 38257f21012SBarry Smith while (comms) { 3837c5b2466SBarry Smith PetscCallMPIReturnMPI(MPI_Comm_free(&comms->comm)); 38457f21012SBarry Smith pcomm = comms; 38557f21012SBarry Smith comms = comms->next; 3867c5b2466SBarry Smith PetscCallReturnMPI(PetscFree(pcomm)); 38757f21012SBarry Smith } 3887c5b2466SBarry Smith PetscCallReturnMPI(PetscFree(counter)); 389480cf27aSJed Brown PetscFunctionReturn(MPI_SUCCESS); 390480cf27aSJed Brown } 391480cf27aSJed Brown 392480cf27aSJed Brown /* 39347435625SJed Brown This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 394da3039f7SJed Brown calls MPI_Comm_free(). 395da3039f7SJed Brown 396da3039f7SJed Brown This is the only entry point for breaking the links between inner and outer comms. 397480cf27aSJed Brown 398ff0e51ddSBarry Smith This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 399480cf27aSJed Brown 40012801b39SBarry Smith Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 401480cf27aSJed Brown 402480cf27aSJed Brown */ 4038434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_InnerComm_Attr_DeleteFn(MPI_Comm comm, PetscMPIInt keyval, void *attr_val, void *extra_state) 404d71ae5a4SJacob Faibussowitsch { 4059371c9d4SSatish Balay union 406480cf27aSJed Brown { 4079371c9d4SSatish Balay MPI_Comm comm; 4089371c9d4SSatish Balay void *ptr; 4099371c9d4SSatish Balay } icomm; 410480cf27aSJed Brown 411480cf27aSJed Brown PetscFunctionBegin; 4127c5b2466SBarry Smith PetscCheckReturnMPI(keyval == Petsc_InnerComm_keyval, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Unexpected keyval"); 413ec4fadc2SJed Brown icomm.ptr = attr_val; 41476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 41533779a13SJunchao Zhang /* Error out if the inner/outer comms are not correctly linked through their Outer/InnterComm attributes */ 41633779a13SJunchao Zhang PetscMPIInt flg; 4179371c9d4SSatish Balay union 4189371c9d4SSatish Balay { 4199371c9d4SSatish Balay MPI_Comm comm; 4209371c9d4SSatish Balay void *ptr; 4219371c9d4SSatish Balay } ocomm; 4227c5b2466SBarry Smith PetscCallMPIReturnMPI(MPI_Comm_get_attr(icomm.comm, Petsc_OuterComm_keyval, &ocomm, &flg)); 4237c5b2466SBarry Smith PetscCheckReturnMPI(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Inner comm does not have OuterComm attribute"); 4247c5b2466SBarry Smith PetscCheckReturnMPI(ocomm.comm == comm, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Inner comm's OuterComm attribute does not point to outer PETSc comm"); 42533779a13SJunchao Zhang } 4267c5b2466SBarry Smith PetscCallMPIReturnMPI(MPI_Comm_delete_attr(icomm.comm, Petsc_OuterComm_keyval)); 4277c5b2466SBarry Smith PetscCallReturnMPI(PetscInfo(NULL, "User MPI_Comm %ld is being unlinked from inner PETSc comm %ld\n", (long)comm, (long)icomm.comm)); 428da3039f7SJed Brown PetscFunctionReturn(MPI_SUCCESS); 429b89831e5SBarry Smith } 430da3039f7SJed Brown 431da3039f7SJed Brown /* 4328434afd1SBarry Smith * This is invoked on the inner comm when Petsc_InnerComm_Attr_DeleteFn calls MPI_Comm_delete_attr(). It should not be reached any other way. 433da3039f7SJed Brown */ 4348434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_OuterComm_Attr_DeleteFn(MPI_Comm comm, PetscMPIInt keyval, void *attr_val, void *extra_state) 435d71ae5a4SJacob Faibussowitsch { 436da3039f7SJed Brown PetscFunctionBegin; 4377c5b2466SBarry Smith PetscCallReturnMPI(PetscInfo(NULL, "Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n", (long)comm)); 438480cf27aSJed Brown PetscFunctionReturn(MPI_SUCCESS); 439480cf27aSJed Brown } 440480cf27aSJed Brown 4418434afd1SBarry Smith PETSC_EXTERN PetscMPIInt MPIAPI Petsc_ShmComm_Attr_DeleteFn(MPI_Comm, PetscMPIInt, void *, void *); 44242218b76SBarry Smith 443951e3c8eSBarry Smith #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 4448cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype, MPI_Aint *, void *); 4458cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void *, MPI_Datatype, PetscMPIInt, void *, MPI_Offset, void *); 4468cc058d9SJed Brown PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void *, MPI_Datatype, PetscMPIInt, void *, MPI_Offset, void *); 447e39fd77fSBarry Smith #endif 448e39fd77fSBarry Smith 4490f9be574SPeter Hill PetscMPIInt PETSC_MPI_ERROR_CLASS = MPI_ERR_LASTCODE, PETSC_MPI_ERROR_CODE; 45012801b39SBarry Smith 451eb27c7c8SSatish Balay PETSC_INTERN int PetscGlobalArgc; 4529f0612e4SBarry Smith PETSC_INTERN char **PetscGlobalArgs, **PetscGlobalArgsFortran; 4536ae9a8a6SBarry Smith int PetscGlobalArgc = 0; 45402c9f0b5SLisandro Dalcin char **PetscGlobalArgs = NULL; 4559f0612e4SBarry Smith char **PetscGlobalArgsFortran = NULL; 456dff31646SBarry Smith PetscSegBuffer PetscCitationsList; 457e5c89e4eSSatish Balay 458d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscCitationsInitialize(void) 459d71ae5a4SJacob Faibussowitsch { 460051e4cf2SJed Brown PetscFunctionBegin; 4619566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(1, 10000, &PetscCitationsList)); 46230c35bf2SSatish Balay 46330c35bf2SSatish Balay PetscCall(PetscCitationsRegister("@TechReport{petsc-user-ref,\n\ 46430c35bf2SSatish Balay Author = {Satish Balay and Shrirang Abhyankar and Mark~F. Adams and Steven Benson and Jed Brown\n\ 46530c35bf2SSatish Balay and Peter Brune and Kris Buschelman and Emil Constantinescu and Lisandro Dalcin and Alp Dener\n\ 4663f81df79SBarry Smith and Victor Eijkhout and Jacob Faibussowitsch and William~D. Gropp and V\'{a}clav Hapla and Tobin Isaac and Pierre Jolivet\n\ 46730c35bf2SSatish Balay and Dmitry Karpeev and Dinesh Kaushik and Matthew~G. Knepley and Fande Kong and Scott Kruger\n\ 46830c35bf2SSatish Balay and Dave~A. May and Lois Curfman McInnes and Richard Tran Mills and Lawrence Mitchell and Todd Munson\n\ 4699281ddf3SSatish Balay and Jose~E. Roman and Karl Rupp and Patrick Sanan and Jason Sarich and Barry~F. Smith and Hansol Suh\n\ 47030c35bf2SSatish Balay and Stefano Zampini and Hong Zhang and Hong Zhang and Junchao Zhang},\n\ 47130c35bf2SSatish Balay Title = {{PETSc/TAO} Users Manual},\n\ 4729281ddf3SSatish Balay Number = {ANL-21/39 - Revision 3.22},\n\ 473f5a9e7c7SSatish Balay Doi = {10.2172/2205494},\n\ 47430c35bf2SSatish Balay Institution = {Argonne National Laboratory},\n\ 47530694c2dSSatish Balay Year = {2024}\n}\n", 4769371c9d4SSatish Balay NULL)); 47730c35bf2SSatish Balay 47830c35bf2SSatish Balay PetscCall(PetscCitationsRegister("@InProceedings{petsc-efficient,\n\ 47930c35bf2SSatish Balay Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n\ 48030c35bf2SSatish Balay Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n\ 48130c35bf2SSatish Balay Booktitle = {Modern Software Tools in Scientific Computing},\n\ 48230c35bf2SSatish Balay Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n\ 48330c35bf2SSatish Balay Pages = {163--202},\n\ 48430c35bf2SSatish Balay Publisher = {Birkh{\\\"{a}}user Press},\n\ 4859371c9d4SSatish Balay Year = {1997}\n}\n", 4869371c9d4SSatish Balay NULL)); 4873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 488051e4cf2SJed Brown } 489e5c89e4eSSatish Balay 4902d747510SLisandro Dalcin static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */ 4912d747510SLisandro Dalcin 492d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSetProgramName(const char name[]) 493d71ae5a4SJacob Faibussowitsch { 4942d747510SLisandro Dalcin PetscFunctionBegin; 4959566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(programname, name, sizeof(programname))); 4963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4972d747510SLisandro Dalcin } 4982d747510SLisandro Dalcin 4992d747510SLisandro Dalcin /*@C 5002d747510SLisandro Dalcin PetscGetProgramName - Gets the name of the running program. 5012d747510SLisandro Dalcin 5022d747510SLisandro Dalcin Not Collective 5032d747510SLisandro Dalcin 5042d747510SLisandro Dalcin Input Parameter: 5052d747510SLisandro Dalcin . len - length of the string name 5062d747510SLisandro Dalcin 5072d747510SLisandro Dalcin Output Parameter: 508811af0c4SBarry Smith . name - the name of the running program, provide a string of length `PETSC_MAX_PATH_LEN` 5092d747510SLisandro Dalcin 5102d747510SLisandro Dalcin Level: advanced 5112d747510SLisandro Dalcin 51221532e8aSBarry Smith .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArguments()`, `PetscInitialize()` 5132d747510SLisandro Dalcin @*/ 514d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscGetProgramName(char name[], size_t len) 515d71ae5a4SJacob Faibussowitsch { 5162d747510SLisandro Dalcin PetscFunctionBegin; 5179566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(name, programname, len)); 5183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5192d747510SLisandro Dalcin } 5202d747510SLisandro Dalcin 521e5c89e4eSSatish Balay /*@C 522e5c89e4eSSatish Balay PetscGetArgs - Allows you to access the raw command line arguments anywhere 523811af0c4SBarry Smith after PetscInitialize() is called but before `PetscFinalize()`. 524e5c89e4eSSatish Balay 525cc4c1da9SBarry Smith Not Collective, No Fortran Support 526e5c89e4eSSatish Balay 527e5c89e4eSSatish Balay Output Parameters: 528e5c89e4eSSatish Balay + argc - count of number of command line arguments 529e5c89e4eSSatish Balay - args - the command line arguments 530e5c89e4eSSatish Balay 531e5c89e4eSSatish Balay Level: intermediate 532e5c89e4eSSatish Balay 533e5c89e4eSSatish Balay Notes: 534e5c89e4eSSatish Balay This is usually used to pass the command line arguments into other libraries 535e5c89e4eSSatish Balay that are called internally deep in PETSc or the application. 536e5c89e4eSSatish Balay 5379f0612e4SBarry Smith The first argument contains the program name as is normal for C programs. 538f177e3b1SBarry Smith 53921532e8aSBarry Smith .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArguments()`, `PetscInitialize()` 540e5c89e4eSSatish Balay @*/ 541d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscGetArgs(int *argc, char ***args) 542d71ae5a4SJacob Faibussowitsch { 543e5c89e4eSSatish Balay PetscFunctionBegin; 54439a651e2SJacob Faibussowitsch PetscCheck(PetscInitializeCalled || !PetscFinalizeCalled, PETSC_COMM_SELF, PETSC_ERR_ORDER, "You must call after PetscInitialize() but before PetscFinalize()"); 545e5c89e4eSSatish Balay *argc = PetscGlobalArgc; 546e5c89e4eSSatish Balay *args = PetscGlobalArgs; 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548e5c89e4eSSatish Balay } 549e5c89e4eSSatish Balay 550793721a6SBarry Smith /*@C 551793721a6SBarry Smith PetscGetArguments - Allows you to access the command line arguments anywhere 552811af0c4SBarry Smith after `PetscInitialize()` is called but before `PetscFinalize()`. 553793721a6SBarry Smith 554cc4c1da9SBarry Smith Not Collective, No Fortran Support 555793721a6SBarry Smith 5562fe279fdSBarry Smith Output Parameter: 557793721a6SBarry Smith . args - the command line arguments 558793721a6SBarry Smith 559793721a6SBarry Smith Level: intermediate 560793721a6SBarry Smith 56121532e8aSBarry Smith Note: 56221532e8aSBarry Smith This does NOT start with the program name and IS `NULL` terminated (final arg is void) 563793721a6SBarry Smith 56421532e8aSBarry Smith .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArgs()`, `PetscFreeArguments()`, `PetscInitialize()` 565793721a6SBarry Smith @*/ 566d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscGetArguments(char ***args) 567d71ae5a4SJacob Faibussowitsch { 568793721a6SBarry Smith PetscInt i, argc = PetscGlobalArgc; 569793721a6SBarry Smith 570793721a6SBarry Smith PetscFunctionBegin; 57139a651e2SJacob Faibussowitsch PetscCheck(PetscInitializeCalled || !PetscFinalizeCalled, PETSC_COMM_SELF, PETSC_ERR_ORDER, "You must call after PetscInitialize() but before PetscFinalize()"); 5729371c9d4SSatish Balay if (!argc) { 5739371c9d4SSatish Balay *args = NULL; 5743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5759371c9d4SSatish Balay } 5769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(argc, args)); 5779566063dSJacob Faibussowitsch for (i = 0; i < argc - 1; i++) PetscCall(PetscStrallocpy(PetscGlobalArgs[i + 1], &(*args)[i])); 5782d747510SLisandro Dalcin (*args)[argc - 1] = NULL; 5793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580793721a6SBarry Smith } 581793721a6SBarry Smith 582793721a6SBarry Smith /*@C 583811af0c4SBarry Smith PetscFreeArguments - Frees the memory obtained with `PetscGetArguments()` 584793721a6SBarry Smith 585cc4c1da9SBarry Smith Not Collective, No Fortran Support 586793721a6SBarry Smith 5872fe279fdSBarry Smith Output Parameter: 588793721a6SBarry Smith . args - the command line arguments 589793721a6SBarry Smith 590793721a6SBarry Smith Level: intermediate 591793721a6SBarry Smith 592db781477SPatrick Sanan .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArgs()`, `PetscGetArguments()` 593793721a6SBarry Smith @*/ 594d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFreeArguments(char **args) 595d71ae5a4SJacob Faibussowitsch { 59639a651e2SJacob Faibussowitsch PetscFunctionBegin; 59739a651e2SJacob Faibussowitsch if (args) { 598793721a6SBarry Smith PetscInt i = 0; 599793721a6SBarry Smith 6009566063dSJacob Faibussowitsch while (args[i]) PetscCall(PetscFree(args[i++])); 6019566063dSJacob Faibussowitsch PetscCall(PetscFree(args)); 60239a651e2SJacob Faibussowitsch } 6033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 604793721a6SBarry Smith } 605793721a6SBarry Smith 60627104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_SAWS) 60730befbd2SBarry Smith #include <petscconfiginfo.h> 60830befbd2SBarry Smith 609d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 610d71ae5a4SJacob Faibussowitsch { 61127104ee2SJacob Faibussowitsch PetscFunctionBegin; 61211525c0dSBarry Smith if (!PetscGlobalRank) { 61330befbd2SBarry Smith char cert[PETSC_MAX_PATH_LEN], root[PETSC_MAX_PATH_LEN], *intro, programname[64], *appline, *options, version[64]; 61411525c0dSBarry Smith int port; 615ffbd1cfbSBarry Smith PetscBool flg, rootlocal = PETSC_FALSE, flg2, selectport = PETSC_FALSE; 61611525c0dSBarry Smith size_t applinelen, introlen; 617ffbd1cfbSBarry Smith char sawsurl[256]; 61811525c0dSBarry Smith 6199566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-saws_log", &flg)); 62011525c0dSBarry Smith if (flg) { 62111525c0dSBarry Smith char sawslog[PETSC_MAX_PATH_LEN]; 62211525c0dSBarry Smith 6239566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-saws_log", sawslog, sizeof(sawslog), NULL)); 62411525c0dSBarry Smith if (sawslog[0]) { 625792fecdfSBarry Smith PetscCallSAWs(SAWs_Set_Use_Logfile, (sawslog)); 62611525c0dSBarry Smith } else { 627792fecdfSBarry Smith PetscCallSAWs(SAWs_Set_Use_Logfile, (NULL)); 62811525c0dSBarry Smith } 62911525c0dSBarry Smith } 6309566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-saws_https", cert, sizeof(cert), &flg)); 63148a46eb9SPierre Jolivet if (flg) PetscCallSAWs(SAWs_Set_Use_HTTPS, (cert)); 6329566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-saws_port_auto_select", &selectport, NULL)); 633ffbd1cfbSBarry Smith if (selectport) { 634792fecdfSBarry Smith PetscCallSAWs(SAWs_Get_Available_Port, (&port)); 635792fecdfSBarry Smith PetscCallSAWs(SAWs_Set_Port, (port)); 636ffbd1cfbSBarry Smith } else { 6379566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, NULL, "-saws_port", &port, &flg)); 63848a46eb9SPierre Jolivet if (flg) PetscCallSAWs(SAWs_Set_Port, (port)); 639ffbd1cfbSBarry Smith } 6409566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-saws_root", root, sizeof(root), &flg)); 64111525c0dSBarry Smith if (flg) { 642792fecdfSBarry Smith PetscCallSAWs(SAWs_Set_Document_Root, (root)); 6439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(root, ".", &rootlocal)); 6449c1e0ce8SBarry Smith } else { 6459566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-saws_options", &flg)); 6469c1e0ce8SBarry Smith if (flg) { 6479566063dSJacob Faibussowitsch PetscCall(PetscStrreplace(PETSC_COMM_WORLD, "${PETSC_DIR}/share/petsc/saws", root, sizeof(root))); 648792fecdfSBarry Smith PetscCallSAWs(SAWs_Set_Document_Root, (root)); 6499c1e0ce8SBarry Smith } 65011525c0dSBarry Smith } 6519566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-saws_local", &flg2)); 65211525c0dSBarry Smith if (flg2) { 65311525c0dSBarry Smith char jsdir[PETSC_MAX_PATH_LEN]; 65428b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "-saws_local option requires -saws_root option"); 6559566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(jsdir, sizeof(jsdir), "%s/js", root)); 6569566063dSJacob Faibussowitsch PetscCall(PetscTestDirectory(jsdir, 'r', &flg)); 65728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_FILE_READ, "-saws_local option requires js directory in root directory"); 658792fecdfSBarry Smith PetscCallSAWs(SAWs_Push_Local_Header, ()); 65911525c0dSBarry Smith } 6609566063dSJacob Faibussowitsch PetscCall(PetscGetProgramName(programname, sizeof(programname))); 6619566063dSJacob Faibussowitsch PetscCall(PetscStrlen(help, &applinelen)); 66211525c0dSBarry Smith introlen = 4096 + applinelen; 66330a8c9c0SSurtai Han applinelen += 1024; 6649566063dSJacob Faibussowitsch PetscCall(PetscMalloc(applinelen, &appline)); 6659566063dSJacob Faibussowitsch PetscCall(PetscMalloc(introlen, &intro)); 66611525c0dSBarry Smith 66711525c0dSBarry Smith if (rootlocal) { 6689566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(appline, applinelen, "%s.c.html", programname)); 6699566063dSJacob Faibussowitsch PetscCall(PetscTestFile(appline, 'r', &rootlocal)); 67011525c0dSBarry Smith } 6719566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetAll(NULL, &options)); 67211525c0dSBarry Smith if (rootlocal && help) { 6739566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(appline, applinelen, "<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n", programname, programname, options, help)); 67411525c0dSBarry Smith } else if (help) { 6759566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(appline, applinelen, "<center>Running %s %s</center><br><center><pre>%s</pre></center><br>", programname, options, help)); 67611525c0dSBarry Smith } else { 6779566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(appline, applinelen, "<center> Running %s %s</center><br>\n", programname, options)); 67811525c0dSBarry Smith } 6799566063dSJacob Faibussowitsch PetscCall(PetscFree(options)); 6809566063dSJacob Faibussowitsch PetscCall(PetscGetVersion(version, sizeof(version))); 6819371c9d4SSatish Balay PetscCall(PetscSNPrintf(intro, introlen, 6829371c9d4SSatish Balay "<body>\n" 683a17b96a8SKyle Gerard Felker "<center><h2> <a href=\"https://petsc.org/\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 684df62c222SBarry Smith "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 6859371c9d4SSatish Balay "%s", 6869371c9d4SSatish Balay version, petscconfigureoptions, appline)); 687792fecdfSBarry Smith PetscCallSAWs(SAWs_Push_Body, ("index.html", 0, intro)); 6889566063dSJacob Faibussowitsch PetscCall(PetscFree(intro)); 6899566063dSJacob Faibussowitsch PetscCall(PetscFree(appline)); 690ffbd1cfbSBarry Smith if (selectport) { 691aa573868SBarry Smith PetscBool silent; 6927d812c46SBarry Smith 6937d812c46SBarry Smith /* another process may have grabbed the port so keep trying */ 69439a651e2SJacob Faibussowitsch while (SAWs_Initialize()) { 695792fecdfSBarry Smith PetscCallSAWs(SAWs_Get_Available_Port, (&port)); 696792fecdfSBarry Smith PetscCallSAWs(SAWs_Set_Port, (port)); 6977d812c46SBarry Smith } 6987d812c46SBarry Smith 6999566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-saws_port_auto_select_silent", &silent, NULL)); 700aa573868SBarry Smith if (!silent) { 701792fecdfSBarry Smith PetscCallSAWs(SAWs_Get_FullURL, (sizeof(sawsurl), sawsurl)); 7029566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Point your browser to %s for SAWs\n", sawsurl)); 703ffbd1cfbSBarry Smith } 7047d812c46SBarry Smith } else { 705792fecdfSBarry Smith PetscCallSAWs(SAWs_Initialize, ()); 706aa573868SBarry Smith } 7079566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister("@TechReport{ saws,\n" 7080af79b04SBarry Smith " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 7090af79b04SBarry Smith " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 7100af79b04SBarry Smith " Institution = {Argonne National Laboratory},\n" 7119371c9d4SSatish Balay " Year = 2013\n}\n", 7129371c9d4SSatish Balay NULL)); 71311525c0dSBarry Smith } 7143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71511525c0dSBarry Smith } 71611525c0dSBarry Smith #endif 71711525c0dSBarry Smith 7184dfee713SSatish Balay /* Things must be done before MPI_Init() when MPI is not yet initialized, and can be shared between C init and Fortran init */ 719d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscPreMPIInit_Private(void) 720d71ae5a4SJacob Faibussowitsch { 7214dfee713SSatish Balay PetscFunctionBegin; 7224dfee713SSatish Balay #if defined(PETSC_HAVE_HWLOC_SOLARIS_BUG) 7234dfee713SSatish Balay /* see MPI.py for details on this bug */ 7244dfee713SSatish Balay (void)setenv("HWLOC_COMPONENTS", "-x86", 1); 7254dfee713SSatish Balay #endif 7263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7274dfee713SSatish Balay } 7284dfee713SSatish Balay 729a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_ADIOS) 730a56f64adSBarry Smith #include <adios.h> 73122580e64SBarry Smith #include <adios_read.h> 7327b56e58cSSatish Balay int64_t Petsc_adios_group; 733a56f64adSBarry Smith #endif 734a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_OPENMP) 735cd1b99a6SBarry Smith #include <omp.h> 736f90b075cSBarry Smith PetscInt PetscNumOMPThreads; 737cd1b99a6SBarry Smith #endif 738a56f64adSBarry Smith 739a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 740a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_CUDA) 7410e6b6b59SJacob Faibussowitsch #include <petscdevice_cuda.h> 742a4af0ceeSJacob Faibussowitsch // REMOVE ME 743a4af0ceeSJacob Faibussowitsch cudaStream_t PetscDefaultCudaStream = NULL; 744a4af0ceeSJacob Faibussowitsch #endif 745a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_HIP) 7460e6b6b59SJacob Faibussowitsch #include <petscdevice_hip.h> 747a4af0ceeSJacob Faibussowitsch // REMOVE ME 748a4af0ceeSJacob Faibussowitsch hipStream_t PetscDefaultHipStream = NULL; 749a4af0ceeSJacob Faibussowitsch #endif 750a4af0ceeSJacob Faibussowitsch 75127104ee2SJacob Faibussowitsch #if PetscDefined(HAVE_DLFCN_H) 752bc8a24ecSBarry Smith #include <dlfcn.h> 753bc8a24ecSBarry Smith #endif 754a4af0ceeSJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscLogInitialize(void); 755a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_VIENNACL) 7563274405dSPierre Jolivet PETSC_EXTERN PetscErrorCode PetscViennaCLInit(void); 757a4af0ceeSJacob Faibussowitsch PetscBool PetscViennaCLSynchronize = PETSC_FALSE; 758a4af0ceeSJacob Faibussowitsch #endif 759bc8a24ecSBarry Smith 760660278c0SBarry Smith PetscBool PetscCIEnabled = PETSC_FALSE, PetscCIEnabledPortableErrorOutput = PETSC_FALSE; 761660278c0SBarry Smith 76285649d77SJunchao Zhang /* 76385649d77SJunchao Zhang PetscInitialize_Common - shared code between C and Fortran initialization 76485649d77SJunchao Zhang 76585649d77SJunchao Zhang prog: program name 76602101c96SSatish Balay file: optional PETSc database file name. Might be in Fortran string format when 'ftn' is true 76785649d77SJunchao Zhang help: program help message 768da81f932SPierre Jolivet ftn: is it called from Fortran initialization (petscinitializef_)? 76985649d77SJunchao Zhang readarguments,len: used when fortran is true 77085649d77SJunchao Zhang */ 771d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscInitialize_Common(const char *prog, const char *file, const char *help, PetscBool ftn, PetscBool readarguments, PetscInt len) 772d71ae5a4SJacob Faibussowitsch { 77385649d77SJunchao Zhang PetscMPIInt size; 77485649d77SJunchao Zhang PetscBool flg = PETSC_TRUE; 77585649d77SJunchao Zhang char hostname[256]; 776046ed546SBarry Smith PetscBool blas_view_flag = PETSC_FALSE; 77785649d77SJunchao Zhang 77827104ee2SJacob Faibussowitsch PetscFunctionBegin; 7793ba16761SJacob Faibussowitsch if (PetscInitializeCalled) PetscFunctionReturn(PETSC_SUCCESS); 78039a651e2SJacob Faibussowitsch /* these must be initialized in a routine, not as a constant declaration */ 78139a651e2SJacob Faibussowitsch PETSC_STDOUT = stdout; 78239a651e2SJacob Faibussowitsch PETSC_STDERR = stderr; 78339a651e2SJacob Faibussowitsch 7849566063dSJacob Faibussowitsch /* PetscCall can be used from now */ 78539a651e2SJacob Faibussowitsch PetscErrorHandlingInitialized = PETSC_TRUE; 78639a651e2SJacob Faibussowitsch 78785649d77SJunchao Zhang /* 78885649d77SJunchao Zhang The checking over compatible runtime libraries is complicated by the MPI ABI initiative 78985649d77SJunchao Zhang https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 79085649d77SJunchao Zhang MPICH v3.1 (Released February 2014) 79185649d77SJunchao Zhang IBM MPI v2.1 (December 2014) 79285649d77SJunchao Zhang Intel MPI Library v5.0 (2014) 79385649d77SJunchao Zhang Cray MPT v7.0.0 (June 2014) 79485649d77SJunchao Zhang As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 79585649d77SJunchao Zhang listed above and since that time are compatible. 79685649d77SJunchao Zhang 79785649d77SJunchao Zhang Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 79885649d77SJunchao Zhang at compile time or runtime. Thus we will need to systematically track the allowed versions 79985649d77SJunchao Zhang and how they are represented in the mpi.h and MPI_Get_library_version() output in order 80085649d77SJunchao Zhang to perform the checking. 80185649d77SJunchao Zhang 80285649d77SJunchao Zhang Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 80385649d77SJunchao Zhang 80485649d77SJunchao Zhang Questions: 80585649d77SJunchao Zhang 80685649d77SJunchao Zhang Should the checks for ABI incompatibility be only on the major version number below? 80785649d77SJunchao Zhang Presumably the output to stderr will be removed before a release. 80885649d77SJunchao Zhang */ 80985649d77SJunchao Zhang 81085649d77SJunchao Zhang #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 81185649d77SJunchao Zhang { 81285649d77SJunchao Zhang char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 81385649d77SJunchao Zhang PetscMPIInt mpilibraryversionlength; 81439a651e2SJacob Faibussowitsch 8159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Get_library_version(mpilibraryversion, &mpilibraryversionlength)); 81685649d77SJunchao Zhang /* check for MPICH versions before MPI ABI initiative */ 81785649d77SJunchao Zhang #if defined(MPICH_VERSION) 81885649d77SJunchao Zhang #if MPICH_NUMVERSION < 30100000 81985649d77SJunchao Zhang { 82085649d77SJunchao Zhang char *ver, *lf; 82185649d77SJunchao Zhang PetscBool flg = PETSC_FALSE; 82239a651e2SJacob Faibussowitsch 8239566063dSJacob Faibussowitsch PetscCall(PetscStrstr(mpilibraryversion, "MPICH Version:", &ver)); 82439a651e2SJacob Faibussowitsch if (ver) { 8259566063dSJacob Faibussowitsch PetscCall(PetscStrchr(ver, '\n', &lf)); 82639a651e2SJacob Faibussowitsch if (lf) { 82785649d77SJunchao Zhang *lf = 0; 8289566063dSJacob Faibussowitsch PetscCall(PetscStrendswith(ver, MPICH_VERSION, &flg)); 82985649d77SJunchao Zhang } 83085649d77SJunchao Zhang } 83185649d77SJunchao Zhang if (!flg) { 832d5b396e8SSatish Balay PetscCall(PetscInfo(NULL, "PETSc warning --- MPICH library version \n%s does not match what PETSc was compiled with %s.\n", mpilibraryversion, MPICH_VERSION)); 83385649d77SJunchao Zhang flg = PETSC_TRUE; 83485649d77SJunchao Zhang } 83585649d77SJunchao Zhang } 83685649d77SJunchao Zhang #endif 83785649d77SJunchao Zhang /* check for Open MPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 838100ffedbSJunchao Zhang #elif defined(PETSC_HAVE_OPENMPI) 83985649d77SJunchao Zhang { 84085649d77SJunchao Zhang char *ver, bs[MPI_MAX_LIBRARY_VERSION_STRING], *bsf; 84185649d77SJunchao Zhang PetscBool flg = PETSC_FALSE; 84285649d77SJunchao Zhang #define PSTRSZ 2 84385649d77SJunchao Zhang char ompistr1[PSTRSZ][MPI_MAX_LIBRARY_VERSION_STRING] = {"Open MPI", "FUJITSU MPI"}; 84485649d77SJunchao Zhang char ompistr2[PSTRSZ][MPI_MAX_LIBRARY_VERSION_STRING] = {"v", "Library "}; 84585649d77SJunchao Zhang int i; 84685649d77SJunchao Zhang for (i = 0; i < PSTRSZ; i++) { 8479566063dSJacob Faibussowitsch PetscCall(PetscStrstr(mpilibraryversion, ompistr1[i], &ver)); 84839a651e2SJacob Faibussowitsch if (ver) { 849100ffedbSJunchao Zhang PetscCall(PetscSNPrintf(bs, MPI_MAX_LIBRARY_VERSION_STRING, "%s%d.%d", ompistr2[i], PETSC_PKG_OPENMPI_VERSION_MAJOR, PETSC_PKG_OPENMPI_VERSION_MINOR)); 8509566063dSJacob Faibussowitsch PetscCall(PetscStrstr(ver, bs, &bsf)); 85139a651e2SJacob Faibussowitsch if (bsf) flg = PETSC_TRUE; 85285649d77SJunchao Zhang break; 85385649d77SJunchao Zhang } 85485649d77SJunchao Zhang } 85585649d77SJunchao Zhang if (!flg) { 856100ffedbSJunchao Zhang PetscCall(PetscInfo(NULL, "PETSc warning --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d.\n", mpilibraryversion, PETSC_PKG_OPENMPI_VERSION_MAJOR, PETSC_PKG_OPENMPI_VERSION_MINOR)); 85785649d77SJunchao Zhang flg = PETSC_TRUE; 85885649d77SJunchao Zhang } 85985649d77SJunchao Zhang } 86085649d77SJunchao Zhang #endif 86185649d77SJunchao Zhang } 86285649d77SJunchao Zhang #endif 86385649d77SJunchao Zhang 864e8953f01SSatish Balay #if defined(PETSC_HAVE_DLADDR) && !(defined(__cray__) && defined(__clang__)) 86585649d77SJunchao Zhang /* These symbols are currently in the Open MPI and MPICH libraries; they may not always be, in that case the test will simply not detect the problem */ 86639a651e2SJacob Faibussowitsch PetscCheck(!dlsym(RTLD_DEFAULT, "ompi_mpi_init") || !dlsym(RTLD_DEFAULT, "MPID_Abort"), PETSC_COMM_SELF, PETSC_ERR_MPI_LIB_INCOMP, "Application was linked against both Open MPI and MPICH based MPI libraries and will not run correctly"); 86785649d77SJunchao Zhang #endif 86885649d77SJunchao Zhang 86985649d77SJunchao Zhang /* on Windows - set printf to default to printing 2 digit exponents */ 87085649d77SJunchao Zhang #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 87185649d77SJunchao Zhang _set_output_format(_TWO_DIGIT_EXPONENT); 87285649d77SJunchao Zhang #endif 87385649d77SJunchao Zhang 8749566063dSJacob Faibussowitsch PetscCall(PetscOptionsCreateDefault()); 87585649d77SJunchao Zhang 87685649d77SJunchao Zhang PetscFinalizeCalled = PETSC_FALSE; 87785649d77SJunchao Zhang 8789566063dSJacob Faibussowitsch PetscCall(PetscSetProgramName(prog)); 8799566063dSJacob Faibussowitsch PetscCall(PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen)); 8809566063dSJacob Faibussowitsch PetscCall(PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout)); 8819566063dSJacob Faibussowitsch PetscCall(PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr)); 8829566063dSJacob Faibussowitsch PetscCall(PetscSpinlockCreate(&PetscCommSpinLock)); 88385649d77SJunchao Zhang 88485649d77SJunchao Zhang if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 8859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_set_errhandler(PETSC_COMM_WORLD, MPI_ERRORS_RETURN)); 88685649d77SJunchao Zhang 88785649d77SJunchao Zhang if (PETSC_MPI_ERROR_CLASS == MPI_ERR_LASTCODE) { 8889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS)); 8899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Add_error_code(PETSC_MPI_ERROR_CLASS, &PETSC_MPI_ERROR_CODE)); 89085649d77SJunchao Zhang } 89185649d77SJunchao Zhang 89285649d77SJunchao Zhang /* Done after init due to a bug in MPICH-GM? */ 8939566063dSJacob Faibussowitsch PetscCall(PetscErrorPrintfInitialize()); 89485649d77SJunchao Zhang 8959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &PetscGlobalRank)); 8969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(MPI_COMM_WORLD, &PetscGlobalSize)); 89785649d77SJunchao Zhang 89885649d77SJunchao Zhang MPIU_BOOL = MPI_INT; 89985649d77SJunchao Zhang MPIU_ENUM = MPI_INT; 90085649d77SJunchao Zhang MPIU_FORTRANADDR = (sizeof(void *) == sizeof(int)) ? MPI_INT : MPIU_INT64; 90185649d77SJunchao Zhang if (sizeof(size_t) == sizeof(unsigned)) MPIU_SIZE_T = MPI_UNSIGNED; 90285649d77SJunchao Zhang else if (sizeof(size_t) == sizeof(unsigned long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG; 90385649d77SJunchao Zhang #if defined(PETSC_SIZEOF_LONG_LONG) 90485649d77SJunchao Zhang else if (sizeof(size_t) == sizeof(unsigned long long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG_LONG; 90585649d77SJunchao Zhang #endif 90639a651e2SJacob Faibussowitsch else SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_SUP_SYS, "Could not find MPI type for size_t"); 90785649d77SJunchao Zhang 90885649d77SJunchao Zhang /* 90985649d77SJunchao Zhang Initialized the global complex variable; this is because with 91085649d77SJunchao Zhang shared libraries the constructors for global variables 91185649d77SJunchao Zhang are not called; at least on IRIX. 91285649d77SJunchao Zhang */ 91385649d77SJunchao Zhang #if defined(PETSC_HAVE_COMPLEX) 91485649d77SJunchao Zhang { 91585649d77SJunchao Zhang #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 91685649d77SJunchao Zhang PetscComplex ic(0.0, 1.0); 91785649d77SJunchao Zhang PETSC_i = ic; 91885649d77SJunchao Zhang #else 91985649d77SJunchao Zhang PETSC_i = _Complex_I; 92085649d77SJunchao Zhang #endif 92185649d77SJunchao Zhang } 92285649d77SJunchao Zhang #endif /* PETSC_HAVE_COMPLEX */ 92385649d77SJunchao Zhang 92485649d77SJunchao Zhang /* 92585649d77SJunchao Zhang Create the PETSc MPI reduction operator that sums of the first 92685649d77SJunchao Zhang half of the entries and maxes the second half. 92785649d77SJunchao Zhang */ 9289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(MPIU_MaxSum_Local, 1, &MPIU_MAXSUM_OP)); 92985649d77SJunchao Zhang 930ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128) 9319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2, MPI_DOUBLE, &MPIU___FLOAT128)); 9329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU___FLOAT128)); 93374c01ffaSSatish Balay #if defined(PETSC_HAVE_COMPLEX) 9349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(4, MPI_DOUBLE, &MPIU___COMPLEX128)); 9359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU___COMPLEX128)); 93685649d77SJunchao Zhang #endif 93774c01ffaSSatish Balay #endif 938ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16) 9399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2, MPI_CHAR, &MPIU___FP16)); 9409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU___FP16)); 94185649d77SJunchao Zhang #endif 94285649d77SJunchao Zhang 94385649d77SJunchao Zhang #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 9449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(PetscSum_Local, 1, &MPIU_SUM)); 945613bf2b2SPierre Jolivet PetscCallMPI(MPI_Op_create(PetscMax_Local, 1, &MPIU_MAX)); 946613bf2b2SPierre Jolivet PetscCallMPI(MPI_Op_create(PetscMin_Local, 1, &MPIU_MIN)); 947ef384fdeSPierre Jolivet #elif (defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)) || (defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16)) 9489e517322SPierre Jolivet PetscCallMPI(MPI_Op_create(PetscSum_Local, 1, &MPIU_SUM___FP16___FLOAT128)); 94985649d77SJunchao Zhang #endif 95085649d77SJunchao Zhang 9519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2, MPIU_SCALAR, &MPIU_2SCALAR)); 95262e5d2d2SJDBetteridge PetscCallMPI(MPI_Op_create(PetscGarbageKeySortedIntersect, 1, &Petsc_Garbage_SetIntersectOp)); 9539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU_2SCALAR)); 95485649d77SJunchao Zhang 95585649d77SJunchao Zhang /* create datatypes used by MPIU_MAXLOC, MPIU_MINLOC and PetscSplitReduction_Op */ 95685649d77SJunchao Zhang #if !defined(PETSC_HAVE_MPIUNI) 95785649d77SJunchao Zhang { 95885649d77SJunchao Zhang PetscMPIInt blockSizes[2] = {1, 1}; 95993d501b3SJacob Faibussowitsch MPI_Aint blockOffsets[2] = {offsetof(struct petsc_mpiu_real_int, v), offsetof(struct petsc_mpiu_real_int, i)}; 96085649d77SJunchao Zhang MPI_Datatype blockTypes[2] = {MPIU_REAL, MPIU_INT}, tmpStruct; 96185649d77SJunchao Zhang 9629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(2, blockSizes, blockOffsets, blockTypes, &tmpStruct)); 96393d501b3SJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(tmpStruct, 0, sizeof(struct petsc_mpiu_real_int), &MPIU_REAL_INT)); 9649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&tmpStruct)); 9659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU_REAL_INT)); 96685649d77SJunchao Zhang } 96785649d77SJunchao Zhang { 96885649d77SJunchao Zhang PetscMPIInt blockSizes[2] = {1, 1}; 96993d501b3SJacob Faibussowitsch MPI_Aint blockOffsets[2] = {offsetof(struct petsc_mpiu_scalar_int, v), offsetof(struct petsc_mpiu_scalar_int, i)}; 97085649d77SJunchao Zhang MPI_Datatype blockTypes[2] = {MPIU_SCALAR, MPIU_INT}, tmpStruct; 97185649d77SJunchao Zhang 9729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(2, blockSizes, blockOffsets, blockTypes, &tmpStruct)); 97393d501b3SJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(tmpStruct, 0, sizeof(struct petsc_mpiu_scalar_int), &MPIU_SCALAR_INT)); 9749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&tmpStruct)); 9759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU_SCALAR_INT)); 97685649d77SJunchao Zhang } 97785649d77SJunchao Zhang #endif 97885649d77SJunchao Zhang 97985649d77SJunchao Zhang #if defined(PETSC_USE_64BIT_INDICES) 9809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2, MPIU_INT, &MPIU_2INT)); 9819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU_2INT)); 9826497c311SBarry Smith 9836497c311SBarry Smith #if !defined(PETSC_HAVE_MPIUNI) 9846497c311SBarry Smith { 9856497c311SBarry Smith int blockSizes[] = {1, 1}; 9866497c311SBarry Smith MPI_Aint blockOffsets[] = {offsetof(struct petsc_mpiu_int_mpiint, a), offsetof(struct petsc_mpiu_int_mpiint, b)}; 9876497c311SBarry Smith MPI_Datatype blockTypes[] = {MPIU_INT, MPI_INT}, tmpStruct; 9886497c311SBarry Smith 9896497c311SBarry Smith PetscCallMPI(MPI_Type_create_struct(2, blockSizes, blockOffsets, blockTypes, &tmpStruct)); 9906497c311SBarry Smith PetscCallMPI(MPI_Type_create_resized(tmpStruct, 0, sizeof(struct petsc_mpiu_int_mpiint), &MPIU_INT_MPIINT)); 9916497c311SBarry Smith PetscCallMPI(MPI_Type_free(&tmpStruct)); 9926497c311SBarry Smith PetscCallMPI(MPI_Type_commit(&MPIU_INT_MPIINT)); 9936497c311SBarry Smith } 9946497c311SBarry Smith #endif 99585649d77SJunchao Zhang #endif 9969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(4, MPI_INT, &MPI_4INT)); 9979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPI_4INT)); 9989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(4, MPIU_INT, &MPIU_4INT)); 9999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&MPIU_4INT)); 100085649d77SJunchao Zhang 100185649d77SJunchao Zhang /* 100285649d77SJunchao Zhang Attributes to be set on PETSc communicators 100385649d77SJunchao Zhang */ 1004c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_Counter_Attr_DeleteFn, &Petsc_Counter_keyval, NULL)); 1005c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_InnerComm_Attr_DeleteFn, &Petsc_InnerComm_keyval, NULL)); 1006c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_OuterComm_Attr_DeleteFn, &Petsc_OuterComm_keyval, NULL)); 1007c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, Petsc_ShmComm_Attr_DeleteFn, &Petsc_ShmComm_keyval, NULL)); 1008c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_CreationIdx_keyval, NULL)); 1009c8025a54SPierre Jolivet PetscCallMPI(MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Garbage_HMap_keyval, NULL)); 101085649d77SJunchao Zhang 1011fbf9dbe5SBarry Smith #if defined(PETSC_USE_FORTRAN_BINDINGS) 10129566063dSJacob Faibussowitsch if (ftn) PetscCall(PetscInitFortran_Private(readarguments, file, len)); 101385649d77SJunchao Zhang else 101485649d77SJunchao Zhang #endif 10159566063dSJacob Faibussowitsch PetscCall(PetscOptionsInsert(NULL, &PetscGlobalArgc, &PetscGlobalArgs, file)); 101685649d77SJunchao Zhang 1017983cdb30SBarry Smith if (PetscDefined(HAVE_MPIUNI)) { 1018983cdb30SBarry Smith const char *mpienv = getenv("PMI_SIZE"); 1019983cdb30SBarry Smith if (!mpienv) mpienv = getenv("OMPI_COMM_WORLD_SIZE"); 1020983cdb30SBarry Smith if (mpienv) { 1021983cdb30SBarry Smith PetscInt isize; 1022983cdb30SBarry Smith PetscBool mflag = PETSC_FALSE; 1023983cdb30SBarry Smith 1024983cdb30SBarry Smith PetscCall(PetscOptionsStringToInt(mpienv, &isize)); 1025983cdb30SBarry Smith PetscCall(PetscOptionsGetBool(NULL, NULL, "-mpiuni-allow-multiprocess-launch", &mflag, NULL)); 1026983cdb30SBarry Smith PetscCheck(isize == 1 || mflag, MPI_COMM_SELF, PETSC_ERR_MPI, "You are using an MPI-uni (sequential) install of PETSc but trying to launch parallel jobs; you need full MPI version of PETSc. Or run with -mpiuni-allow-multiprocess-launch to allow multiple independent MPI-uni jobs."); 1027983cdb30SBarry Smith } 1028983cdb30SBarry Smith } 1029983cdb30SBarry Smith 103085649d77SJunchao Zhang /* call a second time so it can look in the options database */ 10319566063dSJacob Faibussowitsch PetscCall(PetscErrorPrintfInitialize()); 103285649d77SJunchao Zhang 103385649d77SJunchao Zhang /* 103485649d77SJunchao Zhang Check system options and print help 103585649d77SJunchao Zhang */ 10369566063dSJacob Faibussowitsch PetscCall(PetscOptionsCheckInitial_Private(help)); 103785649d77SJunchao Zhang 1038a4af0ceeSJacob Faibussowitsch /* 10390e6b6b59SJacob Faibussowitsch Creates the logging data structures; this is enabled even if logging is not turned on 10400e6b6b59SJacob Faibussowitsch This is the last thing we do before returning to the user code to prevent having the 10410e6b6b59SJacob Faibussowitsch logging numbers contaminated by any startup time associated with MPI 10420e6b6b59SJacob Faibussowitsch */ 10430e6b6b59SJacob Faibussowitsch PetscCall(PetscLogInitialize()); 10440e6b6b59SJacob Faibussowitsch 10450e6b6b59SJacob Faibussowitsch /* 1046a4af0ceeSJacob Faibussowitsch Initialize PetscDevice and PetscDeviceContext 1047a4af0ceeSJacob Faibussowitsch 1048a4af0ceeSJacob Faibussowitsch Note to any future devs thinking of moving this, proper initialization requires: 1049a4af0ceeSJacob Faibussowitsch 1. MPI initialized 1050a4af0ceeSJacob Faibussowitsch 2. Options DB initialized 10510e6b6b59SJacob Faibussowitsch 3. Petsc error handling initialized, specifically signal handlers. This expects to set up 10520e6b6b59SJacob Faibussowitsch its own SIGSEV handler via the push/pop interface. 10530e6b6b59SJacob Faibussowitsch 4. Logging initialized 1054a4af0ceeSJacob Faibussowitsch */ 10559566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitializeFromOptions_Internal(PETSC_COMM_WORLD)); 1056a4af0ceeSJacob Faibussowitsch 1057a4af0ceeSJacob Faibussowitsch #if PetscDefined(HAVE_VIENNACL) 1058a4af0ceeSJacob Faibussowitsch flg = PETSC_FALSE; 1059d75802c7SJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-log_view", &flg)); 10609566063dSJacob Faibussowitsch if (!flg) PetscCall(PetscOptionsGetBool(NULL, NULL, "-viennacl_synchronize", &flg, NULL)); 1061a4af0ceeSJacob Faibussowitsch PetscViennaCLSynchronize = flg; 10629566063dSJacob Faibussowitsch PetscCall(PetscViennaCLInit()); 1063a4af0ceeSJacob Faibussowitsch #endif 1064a4af0ceeSJacob Faibussowitsch 10659566063dSJacob Faibussowitsch PetscCall(PetscCitationsInitialize()); 106685649d77SJunchao Zhang 106785649d77SJunchao Zhang #if defined(PETSC_HAVE_SAWS) 10689566063dSJacob Faibussowitsch PetscCall(PetscInitializeSAWs(ftn ? NULL : help)); 106927104ee2SJacob Faibussowitsch flg = PETSC_FALSE; 10709566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-stack_view", &flg)); 10719566063dSJacob Faibussowitsch if (flg) PetscCall(PetscStackViewSAWs()); 107285649d77SJunchao Zhang #endif 107385649d77SJunchao Zhang 107485649d77SJunchao Zhang /* 107585649d77SJunchao Zhang Load the dynamic libraries (on machines that support them), this registers all 107685649d77SJunchao Zhang the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 107785649d77SJunchao Zhang */ 10789566063dSJacob Faibussowitsch PetscCall(PetscInitialize_DynamicLibraries()); 107985649d77SJunchao Zhang 10809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size)); 10819566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "PETSc successfully started: number of processors = %d\n", size)); 108296dcfd6cSBarry Smith PetscCall(PetscGetHostName(hostname, sizeof(hostname))); 10839566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "Running on machine: %s\n", hostname)); 108485649d77SJunchao Zhang #if defined(PETSC_HAVE_OPENMP) 108585649d77SJunchao Zhang { 108685649d77SJunchao Zhang PetscBool omp_view_flag; 108785649d77SJunchao Zhang char *threads = getenv("OMP_NUM_THREADS"); 108885649d77SJunchao Zhang 108985649d77SJunchao Zhang if (threads) { 10909566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "Number of OpenMP threads %s (as given by OMP_NUM_THREADS)\n", threads)); 109185649d77SJunchao Zhang (void)sscanf(threads, "%" PetscInt_FMT, &PetscNumOMPThreads); 109285649d77SJunchao Zhang } else { 10932f840973SStefano Zampini PetscNumOMPThreads = (PetscInt)omp_get_max_threads(); 10949566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "Number of OpenMP threads %" PetscInt_FMT " (as given by omp_get_max_threads())\n", PetscNumOMPThreads)); 109585649d77SJunchao Zhang } 1096d0609cedSBarry Smith PetscOptionsBegin(PETSC_COMM_WORLD, NULL, "OpenMP options", "Sys"); 10979566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-omp_num_threads", "Number of OpenMP threads to use (can also use environmental variable OMP_NUM_THREADS", "None", PetscNumOMPThreads, &PetscNumOMPThreads, &flg)); 10989566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-omp_view", "Display OpenMP number of threads", NULL, &omp_view_flag)); 1099d0609cedSBarry Smith PetscOptionsEnd(); 110085649d77SJunchao Zhang if (flg) { 11011a0ee928SPierre Jolivet PetscCall(PetscInfo(NULL, "Number of OpenMP threads %" PetscInt_FMT " (given by -omp_num_threads)\n", PetscNumOMPThreads)); 110285649d77SJunchao Zhang omp_set_num_threads((int)PetscNumOMPThreads); 110385649d77SJunchao Zhang } 110448a46eb9SPierre Jolivet if (omp_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "OpenMP: number of threads %" PetscInt_FMT "\n", PetscNumOMPThreads)); 110585649d77SJunchao Zhang } 110685649d77SJunchao Zhang #endif 110785649d77SJunchao Zhang 1108046ed546SBarry Smith PetscOptionsBegin(PETSC_COMM_WORLD, NULL, "BLAS options", "Sys"); 1109046ed546SBarry Smith PetscCall(PetscOptionsName("-blas_view", "Display number of threads to use for BLAS operations", NULL, &blas_view_flag)); 1110046ed546SBarry Smith #if defined(PETSC_HAVE_BLI_THREAD_SET_NUM_THREADS) || defined(PETSC_HAVE_MKL_SET_NUM_THREADS) || defined(PETSC_HAVE_OPENBLAS_SET_NUM_THREADS) 1111046ed546SBarry Smith { 1112046ed546SBarry Smith char *threads = NULL; 1113046ed546SBarry Smith 1114046ed546SBarry Smith /* determine any default number of threads requested in the environment; TODO: Apple libraries? */ 1115046ed546SBarry Smith #if defined(PETSC_HAVE_BLI_THREAD_SET_NUM_THREADS) 1116046ed546SBarry Smith threads = getenv("BLIS_NUM_THREADS"); 1117046ed546SBarry Smith if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of BLIS threads %s given by BLIS_NUM_THREADS\n", threads)); 1118046ed546SBarry Smith if (!threads) { 1119046ed546SBarry Smith threads = getenv("OMP_NUM_THREADS"); 1120046ed546SBarry Smith if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of BLIS threads %s given by OMP_NUM_THREADS\n", threads)); 1121046ed546SBarry Smith } 1122046ed546SBarry Smith #elif defined(PETSC_HAVE_MKL_SET_NUM_THREADS) 1123046ed546SBarry Smith threads = getenv("MKL_NUM_THREADS"); 1124046ed546SBarry Smith if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of MKL threads %s given by MKL_NUM_THREADS\n", threads)); 112597873304SJunchao Zhang if (!threads) { 112697873304SJunchao Zhang threads = getenv("OMP_NUM_THREADS"); 112797873304SJunchao Zhang if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of MKL threads %s given by OMP_NUM_THREADS\n", threads)); 112897873304SJunchao Zhang } 1129046ed546SBarry Smith #elif defined(PETSC_HAVE_OPENBLAS_SET_NUM_THREADS) 1130046ed546SBarry Smith threads = getenv("OPENBLAS_NUM_THREADS"); 1131046ed546SBarry Smith if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of OpenBLAS threads %s given by OPENBLAS_NUM_THREADS\n", threads)); 1132046ed546SBarry Smith if (!threads) { 1133046ed546SBarry Smith threads = getenv("OMP_NUM_THREADS"); 1134046ed546SBarry Smith if (threads) PetscCall(PetscInfo(NULL, "BLAS: Environment number of OpenBLAS threads %s given by OMP_NUM_THREADS\n", threads)); 1135046ed546SBarry Smith } 1136046ed546SBarry Smith #endif 1137046ed546SBarry Smith if (threads) (void)sscanf(threads, "%" PetscInt_FMT, &PetscNumBLASThreads); 1138046ed546SBarry Smith PetscCall(PetscOptionsInt("-blas_num_threads", "Number of threads to use for BLAS operations", "None", PetscNumBLASThreads, &PetscNumBLASThreads, &flg)); 113997873304SJunchao Zhang if (flg) PetscCall(PetscInfo(NULL, "BLAS: Command line number of BLAS thread %" PetscInt_FMT "given by -blas_num_threads\n", PetscNumBLASThreads)); 114097873304SJunchao Zhang if (flg || threads) { 1141046ed546SBarry Smith PetscCall(PetscBLASSetNumThreads(PetscNumBLASThreads)); 1142046ed546SBarry Smith if (blas_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "BLAS: number of threads %" PetscInt_FMT "\n", PetscNumBLASThreads)); 1143046ed546SBarry Smith } 114497873304SJunchao Zhang } 1145046ed546SBarry Smith #elif defined(PETSC_HAVE_APPLE_ACCELERATE) 1146046ed546SBarry Smith PetscCall(PetscInfo(NULL, "BLAS: Apple Accelerate library, thread support with no user control\n")); 1147046ed546SBarry Smith if (blas_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "BLAS: Apple Accelerate library, thread support with no user control\n")); 1148046ed546SBarry Smith #else 1149046ed546SBarry Smith if (blas_view_flag) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "BLAS: no thread support\n")); 1150046ed546SBarry Smith #endif 1151046ed546SBarry Smith PetscOptionsEnd(); 1152046ed546SBarry Smith 115385649d77SJunchao Zhang #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 115485649d77SJunchao Zhang /* 115585649d77SJunchao Zhang Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 115685649d77SJunchao Zhang 115785649d77SJunchao Zhang Currently not used because it is not supported by MPICH. 115885649d77SJunchao Zhang */ 11599566063dSJacob Faibussowitsch if (!PetscBinaryBigEndian()) PetscCallMPI(MPI_Register_datarep((char *)"petsc", PetscDataRep_read_conv_fn, PetscDataRep_write_conv_fn, PetscDataRep_extent_fn, NULL)); 116085649d77SJunchao Zhang #endif 116185649d77SJunchao Zhang 116285649d77SJunchao Zhang #if defined(PETSC_SERIALIZE_FUNCTIONS) 11639566063dSJacob Faibussowitsch PetscCall(PetscFPTCreate(10000)); 116485649d77SJunchao Zhang #endif 116585649d77SJunchao Zhang 116685649d77SJunchao Zhang #if defined(PETSC_HAVE_HWLOC) 116785649d77SJunchao Zhang { 116885649d77SJunchao Zhang PetscViewer viewer; 1169648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PETSC_COMM_WORLD, NULL, NULL, "-process_view", &viewer, NULL, &flg)); 117085649d77SJunchao Zhang if (flg) { 11719566063dSJacob Faibussowitsch PetscCall(PetscProcessPlacementView(viewer)); 1172648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 117385649d77SJunchao Zhang } 117485649d77SJunchao Zhang } 117585649d77SJunchao Zhang #endif 117685649d77SJunchao Zhang 117785649d77SJunchao Zhang flg = PETSC_TRUE; 11789566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-viewfromoptions", &flg, NULL)); 1179648c30bcSBarry Smith if (!flg) PetscCall(PetscOptionsPushCreateViewerOff(PETSC_TRUE)); 118085649d77SJunchao Zhang 118185649d77SJunchao Zhang #if defined(PETSC_HAVE_ADIOS) 11823ba16761SJacob Faibussowitsch PetscCallExternal(adios_init_noxml, PETSC_COMM_WORLD); 11833ba16761SJacob Faibussowitsch PetscCallExternal(adios_declare_group, &Petsc_adios_group, "PETSc", "", adios_stat_default); 11843ba16761SJacob Faibussowitsch PetscCallExternal(adios_select_method, Petsc_adios_group, "MPI", "", ""); 11853ba16761SJacob Faibussowitsch PetscCallExternal(adios_read_init_method, ADIOS_READ_METHOD_BP, PETSC_COMM_WORLD, ""); 118685649d77SJunchao Zhang #endif 118785649d77SJunchao Zhang 118885649d77SJunchao Zhang #if defined(__VALGRIND_H) 118985649d77SJunchao Zhang PETSC_RUNNING_ON_VALGRIND = RUNNING_ON_VALGRIND ? PETSC_TRUE : PETSC_FALSE; 119085649d77SJunchao Zhang #if defined(PETSC_USING_DARWIN) && defined(PETSC_BLASLAPACK_SDOT_RETURNS_DOUBLE) 1191337bb527SBarry Smith if (PETSC_RUNNING_ON_VALGRIND) PetscCall(PetscPrintf(PETSC_COMM_WORLD, "WARNING: Running valgrind with the macOS native BLAS and LAPACK can fail. If it fails, try configuring with --download-fblaslapack or --download-f2cblaslapack")); 119285649d77SJunchao Zhang #endif 119385649d77SJunchao Zhang #endif 119485649d77SJunchao Zhang /* 119585649d77SJunchao Zhang Set flag that we are completely initialized 119685649d77SJunchao Zhang */ 119785649d77SJunchao Zhang PetscInitializeCalled = PETSC_TRUE; 119885649d77SJunchao Zhang 11999566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-python", &flg)); 12009566063dSJacob Faibussowitsch if (flg) PetscCall(PetscPythonInitialize(NULL, NULL)); 1201f1f2ae84SBarry Smith 1202f1f2ae84SBarry Smith PetscCall(PetscOptionsHasName(NULL, NULL, "-mpi_linear_solver_server", &flg)); 12039f0612e4SBarry Smith if (flg) PetscCall(PetscInfo(NULL, "Running MPI Linear Solver Server\n")); 1204f1f2ae84SBarry Smith if (PetscDefined(USE_SINGLE_LIBRARY) && flg) PetscCall(PCMPIServerBegin()); 1205f1f2ae84SBarry Smith else PetscCheck(!flg, PETSC_COMM_WORLD, PETSC_ERR_SUP, "PETSc configured using -with-single-library=0; -mpi_linear_solver_server not supported in that case"); 12063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 120785649d77SJunchao Zhang } 120885649d77SJunchao Zhang 120910450e9eSJacob Faibussowitsch // "Unknown section 'Environmental Variables'" 121010450e9eSJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 1211e5c89e4eSSatish Balay /*@C 1212e5c89e4eSSatish Balay PetscInitialize - Initializes the PETSc database and MPI. 1213811af0c4SBarry Smith `PetscInitialize()` calls MPI_Init() if that has yet to be called, 1214e5c89e4eSSatish Balay so this routine should always be called near the beginning of 1215e5c89e4eSSatish Balay your program -- usually the very first line! 1216e5c89e4eSSatish Balay 1217811af0c4SBarry Smith Collective on `MPI_COMM_WORLD` or `PETSC_COMM_WORLD` if it has been set 1218e5c89e4eSSatish Balay 1219e5c89e4eSSatish Balay Input Parameters: 1220e5c89e4eSSatish Balay + argc - count of number of command line arguments 1221e5c89e4eSSatish Balay . args - the command line arguments 1222be10d61cSLisandro Dalcin . file - [optional] PETSc database file, append ":yaml" to filename to specify YAML options format. 1223be10d61cSLisandro Dalcin Use NULL or empty string to not check for code specific file. 1224be10d61cSLisandro Dalcin Also checks ~/.petscrc, .petscrc and petscrc. 1225c5b5d8d5SVaclav Hapla Use -skip_petscrc in the code specific file (or command line) to skip ~/.petscrc, .petscrc and petscrc files. 12260298fd71SBarry Smith - help - [optional] Help message to print, use NULL for no message 1227e5c89e4eSSatish Balay 1228811af0c4SBarry Smith If you wish PETSc code to run ONLY on a subcommunicator of `MPI_COMM_WORLD`, create that 1229811af0c4SBarry Smith communicator first and assign it to `PETSC_COMM_WORLD` BEFORE calling `PetscInitialize()`. Thus if you are running a 1230811af0c4SBarry Smith four process job and two processes will run PETSc and have `PetscInitialize()` and PetscFinalize() and two process will not, 1231811af0c4SBarry Smith then do this. If ALL processes in the job are using `PetscInitialize()` and `PetscFinalize()` then you don't need to do this, even 123205827820SBarry Smith if different subcommunicators of the job are doing different things with PETSc. 1233e5c89e4eSSatish Balay 1234e5c89e4eSSatish Balay Options Database Keys: 12357ca660e7SBarry Smith + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 12367ca660e7SBarry Smith . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 1237e5c89e4eSSatish Balay . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 12388a690491SBarry Smith . -on_error_emacs <machinename> - causes emacsclient to jump to error file 1239811af0c4SBarry Smith . -on_error_abort - calls `abort()` when error detected (no traceback) 1240811af0c4SBarry Smith . -on_error_mpiabort - calls `MPI_abort()` when error detected 12411af3601dSBarry Smith . -error_output_stdout - prints PETSc error messages to stdout instead of the default stderr 12428a690491SBarry Smith . -error_output_none - does not print the error messages (but handles errors in the same way as if this was not called) 1243bf4d2887SBarry Smith . -debugger_ranks [rank1,rank2,...] - Indicates ranks to start in debugger 1244e5c89e4eSSatish Balay . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 1245e5c89e4eSSatish Balay . -stop_for_debugger - Print message on how to attach debugger manually to 1246e5c89e4eSSatish Balay process and wait (-debugger_pause) seconds for attachment 1247aee23540SBarry Smith . -malloc_dump - prints a list of all unfreed memory at the end of the run 1248983cdb30SBarry Smith . -malloc_test - like -malloc_dump -malloc_debug, only active for debugging build, ignored in optimized build. Often set in PETSC_OPTIONS environmental variable 1249811af0c4SBarry Smith . -malloc_view - show a list of all allocated memory during `PetscFinalize()` 125092f119d6SBarry Smith . -malloc_view_threshold <t> - only list memory allocations of size greater than t with -malloc_view 1251608c71bfSMatthew G. Knepley . -malloc_requested_size - malloc logging will record the requested size rather than size after alignment 125292f119d6SBarry Smith . -fp_trap - Stops on floating point exceptions 1253e5c89e4eSSatish Balay . -no_signal_handler - Indicates not to trap error signals 1254e5c89e4eSSatish Balay . -shared_tmp - indicates /tmp directory is shared by all processors 1255e5c89e4eSSatish Balay . -not_shared_tmp - each processor has own /tmp 1256e5c89e4eSSatish Balay . -tmp - alternative name of /tmp directory 1257d7c1f440SPierre Jolivet - -mpiuni-allow-multiprocess-launch - allow mpiexec to launch multiple independent MPI-Uni jobs, otherwise a sanity check error is invoked to prevent misuse of MPI-Uni 1258e5c89e4eSSatish Balay 1259c5b5d8d5SVaclav Hapla Options Database Keys for Option Database: 1260c5b5d8d5SVaclav Hapla + -skip_petscrc - skip the default option files ~/.petscrc, .petscrc, petscrc 1261c5b5d8d5SVaclav Hapla . -options_monitor - monitor all set options to standard output for the whole program run 1262811af0c4SBarry Smith - -options_monitor_cancel - cancel options monitoring hard-wired using `PetscOptionsMonitorSet()` 1263c5b5d8d5SVaclav Hapla 1264c5b5d8d5SVaclav Hapla Options -options_monitor_{all,cancel} are 1265c5b5d8d5SVaclav Hapla position-independent and apply to all options set since the PETSc start. 1266c5b5d8d5SVaclav Hapla They can be used also in option files. 1267c5b5d8d5SVaclav Hapla 1268811af0c4SBarry Smith See `PetscOptionsMonitorSet()` to do monitoring programmatically. 1269c5b5d8d5SVaclav Hapla 1270e5c89e4eSSatish Balay Options Database Keys for Profiling: 1271a7f22e61SSatish Balay See Users-Manual: ch_profiling for details. 1272811af0c4SBarry Smith + -info [filename][:[~]<list,of,classnames>[:[~]self]] - Prints verbose information. See `PetscInfo()`. 1273217044c2SLisandro Dalcin . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 1274217044c2SLisandro Dalcin however it slows things down and gives a distorted view of the overall runtime. 1275495fc317SBarry Smith . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 1276811af0c4SBarry Smith hangs without running in the debugger). See `PetscLogTraceBegin()`. 1277ad2e3d55SToby Isaac . -log_view [:filename:format][,[:filename:format]...] - Prints summary of flop and timing information to screen or file, see `PetscLogView()` (up to 4 viewers) 1278811af0c4SBarry Smith . -log_view_memory - Includes in the summary from -log_view the memory used in each event, see `PetscLogView()`. 1279811af0c4SBarry Smith . -log_view_gpu_time - Includes in the summary from -log_view the time used in each GPU kernel, see `PetscLogView(). 1280f5d6ab90SLisandro Dalcin . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 1281b665b14eSToby Isaac . -log [filename] - Logs profiling information in a dump file, see `PetscLogDump()`. 1282b665b14eSToby Isaac . -log_all [filename] - Same as `-log`. 1283c2f74817SBarry Smith . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 12842611ad71SToby Isaac . -log_perfstubs - Starts a log handler with the perfstubs interface (which is used by TAU) 128561cc7448SToby Isaac . -log_nvtx - Starts an nvtx log handler for use with Nsight 1286811af0c4SBarry Smith . -viewfromoptions on,off - Enable or disable `XXXSetFromOptions()` calls, for applications with many small solves turn this off 1287983cdb30SBarry Smith . -get_total_flops - Returns total flops done by all processors 1288983cdb30SBarry Smith . -memory_view - Print memory usage at end of run 1289c2f74817SBarry Smith - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 1290495fc317SBarry Smith 1291ffbd1cfbSBarry Smith Options Database Keys for SAWs: 1292ffbd1cfbSBarry Smith + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 1293ffbd1cfbSBarry Smith . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 1294ffbd1cfbSBarry Smith this is useful when you are running many jobs that utilize SAWs at the same time 1295ffbd1cfbSBarry Smith . -saws_log <filename> - save a log of all SAWs communication 1296ffbd1cfbSBarry Smith . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 1297ffbd1cfbSBarry Smith - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 1298ffbd1cfbSBarry Smith 1299e5c89e4eSSatish Balay Environmental Variables: 1300811af0c4SBarry Smith + `PETSC_TMP` - alternative tmp directory 1301811af0c4SBarry Smith . `PETSC_SHARED_TMP` - tmp is shared by all processes 1302811af0c4SBarry Smith . `PETSC_NOT_SHARED_TMP` - each process has its own private tmp 1303811af0c4SBarry Smith . `PETSC_OPTIONS` - a string containing additional options for petsc in the form of command line "-key value" pairs 1304811af0c4SBarry Smith . `PETSC_OPTIONS_YAML` - (requires configuring PETSc to use libyaml) a string containing additional options for petsc in the form of a YAML document 1305811af0c4SBarry Smith . `PETSC_VIEWER_SOCKET_PORT` - socket number to use for socket viewer 1306811af0c4SBarry Smith - `PETSC_VIEWER_SOCKET_MACHINE` - machine to use for socket viewer to connect to 1307e5c89e4eSSatish Balay 1308e5c89e4eSSatish Balay Level: beginner 1309e5c89e4eSSatish Balay 1310811af0c4SBarry Smith Note: 1311811af0c4SBarry Smith If for some reason you must call `MPI_Init()` separately, call 1312811af0c4SBarry Smith it before `PetscInitialize()`. 1313e5c89e4eSSatish Balay 1314811af0c4SBarry Smith Fortran Notes: 1315811af0c4SBarry Smith In Fortran this routine can be called with 1316811af0c4SBarry Smith .vb 1317811af0c4SBarry Smith call PetscInitialize(ierr) 1318811af0c4SBarry Smith call PetscInitialize(file,ierr) or 1319811af0c4SBarry Smith call PetscInitialize(file,help,ierr) 1320811af0c4SBarry Smith .ve 1321e5c89e4eSSatish Balay 1322811af0c4SBarry Smith If your main program is C but you call Fortran code that also uses PETSc you need to call `PetscInitializeFortran()` soon after 1323811af0c4SBarry Smith calling `PetscInitialize()`. 1324e5c89e4eSSatish Balay 13255dedd997SBarry Smith Options Database Key for Developers: 13265dedd997SBarry Smith . -checkfunctionlist - automatically checks that function lists associated with objects are correctly cleaned up. Produces messages of the form: 13275dedd997SBarry Smith "function name: MatInodeGetInodeSizes_C" if they are not cleaned up. This flag is always set for the test harness (in framework.py) 13285dedd997SBarry Smith 1329db781477SPatrick Sanan .seealso: `PetscFinalize()`, `PetscInitializeFortran()`, `PetscGetArgs()`, `PetscInitializeNoArguments()`, `PetscLogGpuTime()` 1330e5c89e4eSSatish Balay @*/ 1331d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscInitialize(int *argc, char ***args, const char file[], const char help[]) 1332d71ae5a4SJacob Faibussowitsch { 133385649d77SJunchao Zhang PetscMPIInt flag; 1334983cdb30SBarry Smith const char *prog = "Unknown Name"; 1335e5c89e4eSSatish Balay 133627104ee2SJacob Faibussowitsch PetscFunctionBegin; 13373ba16761SJacob Faibussowitsch if (PetscInitializeCalled) PetscFunctionReturn(PETSC_SUCCESS); 13389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Initialized(&flag)); 1339e5c89e4eSSatish Balay if (!flag) { 134039a651e2SJacob Faibussowitsch PetscCheck(PETSC_COMM_WORLD == MPI_COMM_NULL, PETSC_COMM_SELF, PETSC_ERR_SUP, "You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 13419566063dSJacob Faibussowitsch PetscCall(PetscPreMPIInit_Private()); 13425e765c61SJed Brown #if defined(PETSC_HAVE_MPI_INIT_THREAD) 13435e765c61SJed Brown { 1344835d5ba2SJunchao Zhang PetscMPIInt provided; 1345835d5ba2SJunchao Zhang PetscCallMPI(MPI_Init_thread(argc, args, PETSC_MPI_THREAD_REQUIRED == PETSC_DECIDE ? MPI_THREAD_FUNNELED : PETSC_MPI_THREAD_REQUIRED, &provided)); 1346835d5ba2SJunchao Zhang PetscCheck(PETSC_MPI_THREAD_REQUIRED == PETSC_DECIDE || provided >= PETSC_MPI_THREAD_REQUIRED, PETSC_COMM_SELF, PETSC_ERR_MPI, "The MPI implementation's provided thread level is less than what you required"); 1347835d5ba2SJunchao Zhang if (PETSC_MPI_THREAD_REQUIRED == PETSC_DECIDE) PETSC_MPI_THREAD_REQUIRED = MPI_THREAD_FUNNELED; // assign it a valid value after check-up 13485e765c61SJed Brown } 13495e765c61SJed Brown #else 13509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Init(argc, args)); 13515e765c61SJed Brown #endif 1352e5c89e4eSSatish Balay PetscBeganMPI = PETSC_TRUE; 1353e5c89e4eSSatish Balay } 13544dfee713SSatish Balay 135585649d77SJunchao Zhang if (argc && *argc) prog = **args; 1356e5c89e4eSSatish Balay if (argc && args) { 1357e5c89e4eSSatish Balay PetscGlobalArgc = *argc; 1358e5c89e4eSSatish Balay PetscGlobalArgs = *args; 1359e5c89e4eSSatish Balay } 1360811af0c4SBarry Smith PetscCall(PetscInitialize_Common(prog, file, help, PETSC_FALSE, PETSC_FALSE, 0)); 13613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1362e5c89e4eSSatish Balay } 1363e5c89e4eSSatish Balay 136495c0884eSLisandro Dalcin PETSC_INTERN PetscObject *PetscObjects; 1365ecfe9a72SLisandro Dalcin PETSC_INTERN PetscInt PetscObjectsCounts; 1366ecfe9a72SLisandro Dalcin PETSC_INTERN PetscInt PetscObjectsMaxCounts; 136795c0884eSLisandro Dalcin PETSC_INTERN PetscBool PetscObjectsLog; 1368e5c89e4eSSatish Balay 1369008a6e76SBarry Smith /* 1370008a6e76SBarry Smith Frees all the MPI types and operations that PETSc may have created 1371008a6e76SBarry Smith */ 1372d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFreeMPIResources(void) 1373d71ae5a4SJacob Faibussowitsch { 1374008a6e76SBarry Smith PetscFunctionBegin; 1375ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128) 13769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU___FLOAT128)); 137774c01ffaSSatish Balay #if defined(PETSC_HAVE_COMPLEX) 13789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU___COMPLEX128)); 1379008a6e76SBarry Smith #endif 138074c01ffaSSatish Balay #endif 1381ef384fdeSPierre Jolivet #if defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16) 13829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU___FP16)); 1383008a6e76SBarry Smith #endif 1384008a6e76SBarry Smith 1385de272c7aSSatish Balay #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 13869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&MPIU_SUM)); 1387613bf2b2SPierre Jolivet PetscCallMPI(MPI_Op_free(&MPIU_MAX)); 1388613bf2b2SPierre Jolivet PetscCallMPI(MPI_Op_free(&MPIU_MIN)); 1389ef384fdeSPierre Jolivet #elif (defined(PETSC_HAVE_REAL___FLOAT128) && !defined(PETSC_SKIP_REAL___FLOAT128)) || (defined(PETSC_HAVE_REAL___FP16) && !defined(PETSC_SKIP_REAL___FP16)) 13909e517322SPierre Jolivet PetscCallMPI(MPI_Op_free(&MPIU_SUM___FP16___FLOAT128)); 1391008a6e76SBarry Smith #endif 1392008a6e76SBarry Smith 13939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU_2SCALAR)); 13949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU_REAL_INT)); 13959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU_SCALAR_INT)); 139640df0d72SSatish Balay #if defined(PETSC_USE_64BIT_INDICES) 13979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU_2INT)); 13986497c311SBarry Smith PetscCallMPI(MPI_Type_free(&MPIU_INT_MPIINT)); 1399008a6e76SBarry Smith #endif 14009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPI_4INT)); 14019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&MPIU_4INT)); 14029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&MPIU_MAXSUM_OP)); 140362e5d2d2SJDBetteridge PetscCallMPI(MPI_Op_free(&Petsc_Garbage_SetIntersectOp)); 14043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1405008a6e76SBarry Smith } 1406008a6e76SBarry Smith 1407a4af0ceeSJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 14089f0612e4SBarry Smith PETSC_EXTERN PetscErrorCode PetscFreeAlign(void *, int, const char[], const char[]); 1409a4af0ceeSJacob Faibussowitsch 14109f0612e4SBarry Smith /*@ 1411e5c89e4eSSatish Balay PetscFinalize - Checks for options to be called at the conclusion 1412811af0c4SBarry Smith of the program. `MPI_Finalize()` is called only if the user had not 1413811af0c4SBarry Smith called `MPI_Init()` before calling `PetscInitialize()`. 1414e5c89e4eSSatish Balay 1415811af0c4SBarry Smith Collective on `PETSC_COMM_WORLD` 1416e5c89e4eSSatish Balay 1417e5c89e4eSSatish Balay Options Database Keys: 1418811af0c4SBarry Smith + -options_view - Calls `PetscOptionsView()` 1419e5c89e4eSSatish Balay . -options_left - Prints unused options that remain in the database 14207eb1d149SBarry Smith . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1421e5c89e4eSSatish Balay . -mpidump - Calls PetscMPIDump() 1422811af0c4SBarry Smith . -malloc_dump <optional filename> - Calls `PetscMallocDump()`, displays all memory allocated that has not been freed 14234bd3d7f8SBarry Smith . -memory_view - Prints total memory usage 14244bd3d7f8SBarry Smith - -malloc_view <optional filename> - Prints list of all memory allocated and in what functions 1425e5c89e4eSSatish Balay 1426e5c89e4eSSatish Balay Level: beginner 1427e5c89e4eSSatish Balay 1428e5c89e4eSSatish Balay Note: 1429811af0c4SBarry Smith See `PetscInitialize()` for other runtime options. 1430e5c89e4eSSatish Balay 1431db781477SPatrick Sanan .seealso: `PetscInitialize()`, `PetscOptionsView()`, `PetscMallocDump()`, `PetscMPIDump()`, `PetscEnd()` 1432e5c89e4eSSatish Balay @*/ 1433d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscFinalize(void) 1434d71ae5a4SJacob Faibussowitsch { 14354bb5149bSJed Brown PetscMPIInt rank; 1436a8d2bbe5SBarry Smith PetscInt nopt; 14372bf49c77SBarry Smith PetscBool flg1 = PETSC_FALSE, flg2 = PETSC_FALSE, flg3 = PETSC_FALSE; 1438dff31646SBarry Smith PetscBool flg; 143910463e74SBarry Smith char mname[PETSC_MAX_PATH_LEN]; 1440e5c89e4eSSatish Balay 14413cbbc5ffSBarry Smith PetscFunctionBegin; 144239a651e2SJacob Faibussowitsch PetscCheck(PetscInitializeCalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "PetscInitialize() must be called before PetscFinalize()"); 14439566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "PetscFinalize() called\n")); 1444b022a5c1SBarry Smith 1445f1f2ae84SBarry Smith PetscCall(PetscOptionsHasName(NULL, NULL, "-mpi_linear_solver_server", &flg)); 1446f1f2ae84SBarry Smith if (PetscDefined(USE_SINGLE_LIBRARY) && flg) PetscCall(PCMPIServerEnd()); 1447f1f2ae84SBarry Smith 14489f0612e4SBarry Smith PetscCall(PetscFreeAlign(PetscGlobalArgsFortran, 0, NULL, NULL)); 14499f0612e4SBarry Smith PetscGlobalArgc = 0; 14509f0612e4SBarry Smith PetscGlobalArgs = NULL; 14519f0612e4SBarry Smith 145262e5d2d2SJDBetteridge /* Clean up Garbage automatically on COMM_SELF and COMM_WORLD at finalize */ 145362e5d2d2SJDBetteridge { 145462e5d2d2SJDBetteridge union 145562e5d2d2SJDBetteridge { 145662e5d2d2SJDBetteridge MPI_Comm comm; 145762e5d2d2SJDBetteridge void *ptr; 145862e5d2d2SJDBetteridge } ucomm; 145962e5d2d2SJDBetteridge PetscMPIInt flg; 146062e5d2d2SJDBetteridge void *tmp; 146162e5d2d2SJDBetteridge 146262e5d2d2SJDBetteridge PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_SELF, Petsc_InnerComm_keyval, &ucomm, &flg)); 146362e5d2d2SJDBetteridge if (flg) PetscCallMPI(MPI_Comm_get_attr(ucomm.comm, Petsc_Garbage_HMap_keyval, &tmp, &flg)); 146462e5d2d2SJDBetteridge if (flg) PetscCall(PetscGarbageCleanup(PETSC_COMM_SELF)); 146562e5d2d2SJDBetteridge PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_WORLD, Petsc_InnerComm_keyval, &ucomm, &flg)); 146662e5d2d2SJDBetteridge if (flg) PetscCallMPI(MPI_Comm_get_attr(ucomm.comm, Petsc_Garbage_HMap_keyval, &tmp, &flg)); 146762e5d2d2SJDBetteridge if (flg) PetscCall(PetscGarbageCleanup(PETSC_COMM_WORLD)); 146862e5d2d2SJDBetteridge } 146962e5d2d2SJDBetteridge 14709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank)); 1471a56f64adSBarry Smith #if defined(PETSC_HAVE_ADIOS) 14723ba16761SJacob Faibussowitsch PetscCallExternal(adios_read_finalize_method, ADIOS_READ_METHOD_BP_AGGREGATE); 14733ba16761SJacob Faibussowitsch PetscCallExternal(adios_finalize, rank); 1474a56f64adSBarry Smith #endif 14759566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-citations", &flg)); 1476dff31646SBarry Smith if (flg) { 14771f817a21SBarry Smith char *cits, filename[PETSC_MAX_PATH_LEN]; 14781f817a21SBarry Smith FILE *fd = PETSC_STDOUT; 14791f817a21SBarry Smith 14809566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-citations", filename, sizeof(filename), NULL)); 148148a46eb9SPierre Jolivet if (filename[0]) PetscCall(PetscFOpen(PETSC_COMM_WORLD, filename, "w", &fd)); 14829566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGet(PetscCitationsList, 1, &cits)); 1483dff31646SBarry Smith cits[0] = 0; 14849566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractAlloc(PetscCitationsList, &cits)); 14859566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "If you publish results based on this computation please cite the following:\n")); 14869566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "===========================================================================\n")); 14879566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "%s", cits)); 14889566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_WORLD, fd, "===========================================================================\n")); 14899566063dSJacob Faibussowitsch PetscCall(PetscFClose(PETSC_COMM_WORLD, fd)); 14909566063dSJacob Faibussowitsch PetscCall(PetscFree(cits)); 1491dff31646SBarry Smith } 14929566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&PetscCitationsList)); 1493dff31646SBarry Smith 14942d53ad75SBarry Smith #if defined(PETSC_SERIALIZE_FUNCTIONS) 14959566063dSJacob Faibussowitsch PetscCall(PetscFPTDestroy()); 14962d53ad75SBarry Smith #endif 14972d53ad75SBarry Smith 1498e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 1499dff31646SBarry Smith flg = PETSC_FALSE; 15009566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-saw_options", &flg, NULL)); 15011baa6e33SBarry Smith if (flg) PetscCall(PetscOptionsSAWsDestroy()); 1502d5649816SBarry Smith #endif 1503d5649816SBarry Smith 1504681455b2SBarry Smith #if defined(PETSC_HAVE_X) 1505681455b2SBarry Smith flg1 = PETSC_FALSE; 15069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-x_virtual", &flg1, NULL)); 1507681455b2SBarry Smith if (flg1) { 1508681455b2SBarry Smith /* this is a crude hack, but better than nothing */ 1509a5af8288SJose E. Roman PetscCall(PetscPOpen(PETSC_COMM_WORLD, NULL, "pkill -15 Xvfb", "r", NULL)); 1510681455b2SBarry Smith } 1511681455b2SBarry Smith #endif 1512681455b2SBarry Smith 151367584ceeSBarry Smith #if !defined(PETSC_HAVE_THREADSAFETY) 15149566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-memory_view", &flg2, NULL)); 151548a46eb9SPierre Jolivet if (flg2) PetscCall(PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD, "Summary of Memory Usage in PETSc\n")); 151667584ceeSBarry Smith #endif 1517e5c89e4eSSatish Balay 15182611ad71SToby Isaac if (PetscDefined(USE_LOG)) { 151990d69ab7SBarry Smith flg1 = PETSC_FALSE; 15209566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-get_total_flops", &flg1, NULL)); 1521e5c89e4eSSatish Balay if (flg1) { 1522e5c89e4eSSatish Balay PetscLogDouble flops = 0; 15239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&petsc_TotalFlops, &flops, 1, MPI_DOUBLE, MPI_SUM, 0, PETSC_COMM_WORLD)); 15249566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Total flops over all processors %g\n", flops)); 1525e5c89e4eSSatish Balay } 15262611ad71SToby Isaac } 1527e5c89e4eSSatish Balay 15282611ad71SToby Isaac if (PetscDefined(USE_LOG) && PetscDefined(HAVE_MPE)) { 1529e5c89e4eSSatish Balay mname[0] = 0; 15309566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-log_mpe", mname, sizeof(mname), &flg1)); 15312611ad71SToby Isaac if (flg1) PetscCall(PetscLogMPEDump(mname[0] ? mname : NULL)); 1532e5c89e4eSSatish Balay } 1533a297a907SKarl Rupp 1534c9903f8fSJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 1535c9903f8fSJunchao Zhang // Free petsc/kokkos stuff before the potentially non-null petsc default gpu stream is destroyed by PetscObjectRegisterDestroyAll 1536c9903f8fSJunchao Zhang if (PetscKokkosInitialized) { 1537c9903f8fSJunchao Zhang PetscCall(PetscKokkosFinalize_Private()); 1538c9903f8fSJunchao Zhang PetscKokkosInitialized = PETSC_FALSE; 1539c9903f8fSJunchao Zhang } 1540c9903f8fSJunchao Zhang #endif 1541c9903f8fSJunchao Zhang 15423048253cSJacob Faibussowitsch // Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 15439566063dSJacob Faibussowitsch PetscCall(PetscObjectRegisterDestroyAll()); 1544dd710f27SBarry Smith 15452611ad71SToby Isaac if (PetscDefined(USE_LOG)) { 1546648c30bcSBarry Smith PetscCall(PetscOptionsPushCreateViewerOff(PETSC_FALSE)); 15479566063dSJacob Faibussowitsch PetscCall(PetscLogViewFromOptions()); 1548648c30bcSBarry Smith PetscCall(PetscOptionsPopCreateViewerOff()); 1549473903fcSJunchao Zhang // It should be turned on with PetscLogGpuTime() and never turned off except in this place 1550473903fcSJunchao Zhang PetscLogGpuTimeFlag = PETSC_FALSE; 155187c3beb6SLisandro Dalcin 15523048253cSJacob Faibussowitsch // Free any objects created by the last block of code. 15539566063dSJacob Faibussowitsch PetscCall(PetscObjectRegisterDestroyAll()); 1554dd710f27SBarry Smith 1555dd710f27SBarry Smith mname[0] = 0; 15569566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-log_all", mname, sizeof(mname), &flg1)); 15579566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-log", mname, sizeof(mname), &flg2)); 15589566063dSJacob Faibussowitsch if (flg1 || flg2) PetscCall(PetscLogDump(mname)); 15592611ad71SToby Isaac } 156010463e74SBarry Smith 156190d69ab7SBarry Smith flg1 = PETSC_FALSE; 15629566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-no_signal_handler", &flg1, NULL)); 15639566063dSJacob Faibussowitsch if (!flg1) PetscCall(PetscPopSignalHandler()); 156490d69ab7SBarry Smith flg1 = PETSC_FALSE; 15659566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-mpidump", &flg1, NULL)); 15661baa6e33SBarry Smith if (flg1) PetscCall(PetscMPIDump(stdout)); 156790d69ab7SBarry Smith flg1 = PETSC_FALSE; 156890d69ab7SBarry Smith flg2 = PETSC_FALSE; 15698bb29257SSatish Balay /* preemptive call to avoid listing this option in options table as unused */ 15709566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-malloc_dump", &flg1)); 15719566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-objects_dump", &flg1)); 15729566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-options_view", &flg2, NULL)); 1573e4c476e2SSatish Balay 157457b1f488SBarry Smith if (flg2) { PetscCall(PetscOptionsView(NULL, PETSC_VIEWER_STDOUT_WORLD)); } 1575e5c89e4eSSatish Balay 1576e5c89e4eSSatish Balay /* to prevent PETSc -options_left from warning */ 15779566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-nox", &flg1)); 15789566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-nox_warning", &flg1)); 1579e5c89e4eSSatish Balay 158033fc4174SSatish Balay flg3 = PETSC_FALSE; /* default value is required */ 15819566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-options_left", &flg3, &flg1)); 158259f199a7SJed Brown if (!flg1) flg3 = PETSC_TRUE; 1583e5c89e4eSSatish Balay if (flg3) { 15843de2bfdfSBarry Smith if (!flg2 && flg1) { /* have not yet printed the options */ 158557b1f488SBarry Smith PetscCall(PetscOptionsView(NULL, PETSC_VIEWER_STDOUT_WORLD)); 1586e5c89e4eSSatish Balay } 15879566063dSJacob Faibussowitsch PetscCall(PetscOptionsAllUsed(NULL, &nopt)); 15883de2bfdfSBarry Smith if (nopt) { 15899566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "WARNING! There are options you set that were not used!\n")); 15909566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "WARNING! could be spelling mistake, etc!\n")); 15913de2bfdfSBarry Smith if (nopt == 1) { 15929566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "There is one unused database option. It is:\n")); 1593e5c89e4eSSatish Balay } else { 15949566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "There are %" PetscInt_FMT " unused database options. They are:\n", nopt)); 1595e5c89e4eSSatish Balay } 15963de2bfdfSBarry Smith } else if (flg3 && flg1) { 15979566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "There are no unused options.\n")); 1598df12ba86SBarry Smith } 15999566063dSJacob Faibussowitsch PetscCall(PetscOptionsLeft(NULL)); 1600e5c89e4eSSatish Balay } 1601e5c89e4eSSatish Balay 1602e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 1603d45a07a7SBarry Smith if (!PetscGlobalRank) { 16049566063dSJacob Faibussowitsch PetscCall(PetscStackSAWsViewOff()); 1605792fecdfSBarry Smith PetscCallSAWs(SAWs_Finalize, ()); 1606d45a07a7SBarry Smith } 1607ec957eceSBarry Smith #endif 1608ec957eceSBarry Smith 160910463e74SBarry Smith /* 1610dbc8283eSBarry Smith List all objects the user may have forgot to free 16112eff7a51SBarry Smith */ 16122611ad71SToby Isaac if (PetscDefined(USE_LOG) && PetscObjectsLog) { 16139566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, NULL, "-objects_dump", &flg1)); 1614a64a8e02SBarry Smith if (flg1) { 1615a64a8e02SBarry Smith MPI_Comm local_comm; 16167eb1d149SBarry Smith char string[64]; 1617a64a8e02SBarry Smith 16189566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-objects_dump", string, sizeof(string), NULL)); 1619afd7ed4bSMatthew G. Knepley PetscCallMPI(MPI_Comm_dup(PETSC_COMM_WORLD, &local_comm)); 16209566063dSJacob Faibussowitsch PetscCall(PetscSequentialPhaseBegin_Private(local_comm, 1)); 16219566063dSJacob Faibussowitsch PetscCall(PetscObjectsDump(stdout, (string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE)); 16229566063dSJacob Faibussowitsch PetscCall(PetscSequentialPhaseEnd_Private(local_comm, 1)); 16239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&local_comm)); 16240a1571b3SBarry Smith } 162505df10baSBarry Smith } 16264097062eSBarry Smith 1627dbc8283eSBarry Smith PetscObjectsCounts = 0; 1628dbc8283eSBarry Smith PetscObjectsMaxCounts = 0; 16299566063dSJacob Faibussowitsch PetscCall(PetscFree(PetscObjects)); 16302eff7a51SBarry Smith 163133f85c2fSBarry Smith /* 163233f85c2fSBarry Smith Destroy any packages that registered a finalize 163333f85c2fSBarry Smith */ 16349566063dSJacob Faibussowitsch PetscCall(PetscRegisterFinalizeAll()); 163533f85c2fSBarry Smith 16369566063dSJacob Faibussowitsch PetscCall(PetscLogFinalize()); 1637101409b8SToby Isaac 163833f85c2fSBarry Smith /* 163948dd1dffSBarry Smith Print PetscFunctionLists that have not been properly freed 164048dd1dffSBarry Smith */ 16412e956fe4SStefano Zampini if (PetscPrintFunctionList) PetscCall(PetscFunctionListPrintAll()); 164237e93019SBarry Smith 16434028d114SSatish Balay if (petsc_history) { 16449566063dSJacob Faibussowitsch PetscCall(PetscCloseHistoryFile(&petsc_history)); 164502c9f0b5SLisandro Dalcin petsc_history = NULL; 1646e5c89e4eSSatish Balay } 16479566063dSJacob Faibussowitsch PetscCall(PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton)); 16489566063dSJacob Faibussowitsch PetscCall(PetscInfoDestroy()); 1649e5c89e4eSSatish Balay 165067584ceeSBarry Smith #if !defined(PETSC_HAVE_THREADSAFETY) 165192f119d6SBarry Smith if (!(PETSC_RUNNING_ON_VALGRIND)) { 1652e5c89e4eSSatish Balay char fname[PETSC_MAX_PATH_LEN]; 165392f119d6SBarry Smith char sname[PETSC_MAX_PATH_LEN]; 1654e5c89e4eSSatish Balay FILE *fd; 1655ed9cf6e9SBarry Smith int err; 1656e5c89e4eSSatish Balay 1657dc92acbaSJed Brown flg2 = PETSC_FALSE; 165892f119d6SBarry Smith flg3 = PETSC_FALSE; 16599566063dSJacob Faibussowitsch if (PetscDefined(USE_DEBUG)) PetscCall(PetscOptionsGetBool(NULL, NULL, "-malloc_test", &flg2, NULL)); 16609566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-malloc_debug", &flg3, NULL)); 166192f119d6SBarry Smith fname[0] = 0; 16629566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-malloc_dump", fname, sizeof(fname), &flg1)); 1663e5c89e4eSSatish Balay if (flg1 && fname[0]) { 16643ba16761SJacob Faibussowitsch PetscCall(PetscSNPrintf(sname, sizeof(sname), "%s_%d", fname, rank)); 16659371c9d4SSatish Balay fd = fopen(sname, "w"); 16669371c9d4SSatish Balay PetscCheck(fd, PETSC_COMM_SELF, PETSC_ERR_FILE_OPEN, "Cannot open log file: %s", sname); 16679566063dSJacob Faibussowitsch PetscCall(PetscMallocDump(fd)); 1668ed9cf6e9SBarry Smith err = fclose(fd); 166928b400f6SJacob Faibussowitsch PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_SYS, "fclose() failed on file"); 167092f119d6SBarry Smith } else if (flg1 || flg2 || flg3) { 1671e5c89e4eSSatish Balay MPI_Comm local_comm; 1672e5c89e4eSSatish Balay 1673afd7ed4bSMatthew G. Knepley PetscCallMPI(MPI_Comm_dup(PETSC_COMM_WORLD, &local_comm)); 16749566063dSJacob Faibussowitsch PetscCall(PetscSequentialPhaseBegin_Private(local_comm, 1)); 16759566063dSJacob Faibussowitsch PetscCall(PetscMallocDump(stdout)); 16769566063dSJacob Faibussowitsch PetscCall(PetscSequentialPhaseEnd_Private(local_comm, 1)); 16779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&local_comm)); 1678e5c89e4eSSatish Balay } 1679e5c89e4eSSatish Balay fname[0] = 0; 16809566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-malloc_view", fname, sizeof(fname), &flg1)); 1681e5c89e4eSSatish Balay if (flg1 && fname[0]) { 16823ba16761SJacob Faibussowitsch PetscCall(PetscSNPrintf(sname, sizeof(sname), "%s_%d", fname, rank)); 16839371c9d4SSatish Balay fd = fopen(sname, "w"); 16849371c9d4SSatish Balay PetscCheck(fd, PETSC_COMM_SELF, PETSC_ERR_FILE_OPEN, "Cannot open log file: %s", sname); 16859566063dSJacob Faibussowitsch PetscCall(PetscMallocView(fd)); 1686ed9cf6e9SBarry Smith err = fclose(fd); 168728b400f6SJacob Faibussowitsch PetscCheck(!err, PETSC_COMM_SELF, PETSC_ERR_SYS, "fclose() failed on file"); 168892f119d6SBarry Smith } else if (flg1) { 168992f119d6SBarry Smith MPI_Comm local_comm; 169092f119d6SBarry Smith 1691afd7ed4bSMatthew G. Knepley PetscCallMPI(MPI_Comm_dup(PETSC_COMM_WORLD, &local_comm)); 16929566063dSJacob Faibussowitsch PetscCall(PetscSequentialPhaseBegin_Private(local_comm, 1)); 16939566063dSJacob Faibussowitsch PetscCall(PetscMallocView(stdout)); 16949566063dSJacob Faibussowitsch PetscCall(PetscSequentialPhaseEnd_Private(local_comm, 1)); 16959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&local_comm)); 1696e5c89e4eSSatish Balay } 1697e5c89e4eSSatish Balay } 169867584ceeSBarry Smith #endif 169920e2c332SMatthew G. Knepley 17005486ca60SMatthew G. Knepley /* 17015486ca60SMatthew G. Knepley Close any open dynamic libraries 17025486ca60SMatthew G. Knepley */ 17039566063dSJacob Faibussowitsch PetscCall(PetscFinalize_DynamicLibraries()); 17045486ca60SMatthew G. Knepley 1705e5c89e4eSSatish Balay /* Can be destroyed only after all the options are used */ 17069566063dSJacob Faibussowitsch PetscCall(PetscOptionsDestroyDefault()); 1707e5c89e4eSSatish Balay 170871438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 170971438e86SJunchao Zhang if (PetscBeganNvshmem) { 17109566063dSJacob Faibussowitsch PetscCall(PetscNvshmemFinalize()); 171171438e86SJunchao Zhang PetscBeganNvshmem = PETSC_FALSE; 171271438e86SJunchao Zhang } 171371438e86SJunchao Zhang #endif 1714a0e72f99SJunchao Zhang 17159566063dSJacob Faibussowitsch PetscCall(PetscFreeMPIResources()); 1716e5c89e4eSSatish Balay 1717dbc8283eSBarry Smith /* 1718efb80d3cSBarry Smith Destroy any known inner MPI_Comm's and attributes pointing to them 1719efb80d3cSBarry Smith Note this will not destroy any new communicators the user has created. 1720efb80d3cSBarry Smith 1721efb80d3cSBarry Smith If all PETSc objects were not destroyed those left over objects will have hanging references to 1722efb80d3cSBarry Smith the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1723dbc8283eSBarry Smith */ 1724b770b1f6SSatish Balay { 1725dbc8283eSBarry Smith PetscCommCounter *counter; 1726dbc8283eSBarry Smith PetscMPIInt flg; 1727dbc8283eSBarry Smith MPI_Comm icomm; 17289371c9d4SSatish Balay union 17299371c9d4SSatish Balay { 17309371c9d4SSatish Balay MPI_Comm comm; 17319371c9d4SSatish Balay void *ptr; 17329371c9d4SSatish Balay } ucomm; 17339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_SELF, Petsc_InnerComm_keyval, &ucomm, &flg)); 1734dbc8283eSBarry Smith if (flg) { 1735265f3f35SJed Brown icomm = ucomm.comm; 17369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Counter_keyval, &counter, &flg)); 173728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1738dbc8283eSBarry Smith 17399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_delete_attr(PETSC_COMM_SELF, Petsc_InnerComm_keyval)); 17409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_delete_attr(icomm, Petsc_Counter_keyval)); 17419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&icomm)); 1742dbc8283eSBarry Smith } 17439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(PETSC_COMM_WORLD, Petsc_InnerComm_keyval, &ucomm, &flg)); 1744dbc8283eSBarry Smith if (flg) { 1745265f3f35SJed Brown icomm = ucomm.comm; 17469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_get_attr(icomm, Petsc_Counter_keyval, &counter, &flg)); 174728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_WORLD, PETSC_ERR_ARG_CORRUPT, "Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1748dbc8283eSBarry Smith 17499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_delete_attr(PETSC_COMM_WORLD, Petsc_InnerComm_keyval)); 17509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_delete_attr(icomm, Petsc_Counter_keyval)); 17519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&icomm)); 1752dbc8283eSBarry Smith } 1753b770b1f6SSatish Balay } 1754dbc8283eSBarry Smith 17559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free_keyval(&Petsc_Counter_keyval)); 17569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free_keyval(&Petsc_InnerComm_keyval)); 17579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free_keyval(&Petsc_OuterComm_keyval)); 17589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free_keyval(&Petsc_ShmComm_keyval)); 175962e5d2d2SJDBetteridge PetscCallMPI(MPI_Comm_free_keyval(&Petsc_CreationIdx_keyval)); 176062e5d2d2SJDBetteridge PetscCallMPI(MPI_Comm_free_keyval(&Petsc_Garbage_HMap_keyval)); 1761480cf27aSJed Brown 17625ea2b939SDuncan Campbell // Free keyvals which may be silently created by some routines 17635ea2b939SDuncan Campbell if (Petsc_SharedWD_keyval != MPI_KEYVAL_INVALID) PetscCallMPI(MPI_Comm_free_keyval(&Petsc_SharedWD_keyval)); 17645ea2b939SDuncan Campbell if (Petsc_SharedTmp_keyval != MPI_KEYVAL_INVALID) PetscCallMPI(MPI_Comm_free_keyval(&Petsc_SharedTmp_keyval)); 17655ea2b939SDuncan Campbell 17669566063dSJacob Faibussowitsch PetscCall(PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen)); 17679566063dSJacob Faibussowitsch PetscCall(PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout)); 17689566063dSJacob Faibussowitsch PetscCall(PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr)); 17699566063dSJacob Faibussowitsch PetscCall(PetscSpinlockDestroy(&PetscCommSpinLock)); 1770ef19f930SBarry Smith 1771e5c89e4eSSatish Balay if (PetscBeganMPI) { 177299b1327fSBarry Smith PetscMPIInt flag; 17739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Finalized(&flag)); 177439a651e2SJacob Faibussowitsch PetscCheck(!flag, PETSC_COMM_SELF, PETSC_ERR_LIB, "MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 177539a651e2SJacob Faibussowitsch /* wait until the very last moment to disable error handling */ 177639a651e2SJacob Faibussowitsch PetscErrorHandlingInitialized = PETSC_FALSE; 17779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Finalize()); 177839a651e2SJacob Faibussowitsch } else PetscErrorHandlingInitialized = PETSC_FALSE; 177939a651e2SJacob Faibussowitsch 1780e5c89e4eSSatish Balay /* 1781e5c89e4eSSatish Balay 1782e5c89e4eSSatish Balay Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1783e5c89e4eSSatish Balay the communicator has some outstanding requests on it. Specifically if the 1784e5c89e4eSSatish Balay flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1785e5c89e4eSSatish Balay src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1786e5c89e4eSSatish Balay is never freed as it should be. Thus one may obtain messages of the form 17870e5e90baSSatish Balay [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1788e5c89e4eSSatish Balay memory was not freed. 1789e5c89e4eSSatish Balay 1790e5c89e4eSSatish Balay */ 17919566063dSJacob Faibussowitsch PetscCall(PetscMallocClear()); 17929566063dSJacob Faibussowitsch PetscCall(PetscStackReset()); 1793a297a907SKarl Rupp 1794e5c89e4eSSatish Balay PetscInitializeCalled = PETSC_FALSE; 1795e5c89e4eSSatish Balay PetscFinalizeCalled = PETSC_TRUE; 17967ce81a4bSJacob Faibussowitsch #if defined(PETSC_USE_COVERAGE) 179756883f60SBarry Smith /* 179856883f60SBarry Smith flush gcov, otherwise during CI the flushing continues into the next pipeline resulting in git not being able to delete directories since the 179956883f60SBarry Smith gcov files are still being added to the directories as git tries to remove the directories. 180056883f60SBarry Smith */ 180156883f60SBarry Smith __gcov_flush(); 180256883f60SBarry Smith #endif 18031724198aSStefano Zampini /* To match PetscFunctionBegin() at the beginning of this function */ 18041724198aSStefano Zampini PetscStackClearTop; 18053ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 1806e5c89e4eSSatish Balay } 1807e5c89e4eSSatish Balay 180843db4dbbSBarry Smith #if defined(PETSC_MISSING_LAPACK_lsame_) 1809d71ae5a4SJacob Faibussowitsch PETSC_EXTERN int lsame_(char *a, char *b) 1810d71ae5a4SJacob Faibussowitsch { 181143db4dbbSBarry Smith if (*a == *b) return 1; 181243db4dbbSBarry Smith if (*a + 32 == *b) return 1; 181343db4dbbSBarry Smith if (*a - 32 == *b) return 1; 181443db4dbbSBarry Smith return 0; 181543db4dbbSBarry Smith } 1816a70650f6SBarry Smith #endif 181743db4dbbSBarry Smith 181843db4dbbSBarry Smith #if defined(PETSC_MISSING_LAPACK_lsame) 1819d71ae5a4SJacob Faibussowitsch PETSC_EXTERN int lsame(char *a, char *b) 1820d71ae5a4SJacob Faibussowitsch { 182143db4dbbSBarry Smith if (*a == *b) return 1; 182243db4dbbSBarry Smith if (*a + 32 == *b) return 1; 182343db4dbbSBarry Smith if (*a - 32 == *b) return 1; 182443db4dbbSBarry Smith return 0; 182543db4dbbSBarry Smith } 182643db4dbbSBarry Smith #endif 18276a210b70SBarry Smith 1828462c564dSBarry Smith static inline PetscMPIInt MPIU_Allreduce_Count(const void *inbuf, void *outbuf, MPIU_Count count, MPI_Datatype dtype, MPI_Op op, MPI_Comm comm) 18296a210b70SBarry Smith { 1830462c564dSBarry Smith PetscMPIInt err; 18316a210b70SBarry Smith #if !defined(PETSC_HAVE_MPI_LARGE_COUNT) 18326a210b70SBarry Smith PetscMPIInt count2; 18336a210b70SBarry Smith 1834462c564dSBarry Smith PetscMPIIntCast_Internal(count, &count2); 1835462c564dSBarry Smith err = MPI_Allreduce((void *)inbuf, outbuf, count2, dtype, op, comm); 18366a210b70SBarry Smith #else 1837462c564dSBarry Smith err = MPI_Allreduce_c((void *)inbuf, outbuf, count, dtype, op, comm); 18386a210b70SBarry Smith #endif 1839462c564dSBarry Smith return err; 18406a210b70SBarry Smith } 18416a210b70SBarry Smith 1842462c564dSBarry Smith /* 1843462c564dSBarry Smith When count is 1 and dtype == MPIU_INT performs the reduction in PetscInt64 to check for integer overflow 1844462c564dSBarry Smith */ 1845462c564dSBarry Smith PetscMPIInt MPIU_Allreduce_Private(const void *inbuf, void *outbuf, MPIU_Count count, MPI_Datatype dtype, MPI_Op op, MPI_Comm comm) 18466a210b70SBarry Smith { 1847462c564dSBarry Smith PetscMPIInt err; 18482711dd09SLisandro Dalcin if (!PetscDefined(USE_64BIT_INDICES) && count == 1 && dtype == MPIU_INT && (op == MPI_SUM || op == MPI_PROD)) { 1849462c564dSBarry Smith PetscInt64 incnt, outcnt; 18506a210b70SBarry Smith void *inbufd, *outbufd; 18516a210b70SBarry Smith 18526a210b70SBarry Smith if (inbuf != MPI_IN_PLACE) { 18536a210b70SBarry Smith incnt = *(PetscInt32 *)inbuf; 18546a210b70SBarry Smith inbufd = &incnt; 18556a210b70SBarry Smith } else { 18566a210b70SBarry Smith outcnt = *(PetscInt32 *)outbuf; 18576a210b70SBarry Smith inbufd = (void *)MPI_IN_PLACE; 18586a210b70SBarry Smith } 18596a210b70SBarry Smith outbufd = &outcnt; 1860462c564dSBarry Smith err = MPIU_Allreduce_Count(inbufd, outbufd, count, MPIU_INT64, op, comm); 1861462c564dSBarry Smith if (!err && outcnt > PETSC_INT_MAX) err = MPI_ERR_OTHER; 18626a210b70SBarry Smith *(PetscInt32 *)outbuf = (PetscInt32)outcnt; 18636a210b70SBarry Smith } else { 1864462c564dSBarry Smith err = MPIU_Allreduce_Count(inbuf, outbuf, count, dtype, op, comm); 18656a210b70SBarry Smith } 1866462c564dSBarry Smith return err; 18676a210b70SBarry Smith } 1868*49abdd8aSBarry Smith 1869*49abdd8aSBarry Smith /*@C 1870*49abdd8aSBarry Smith PetscCtxDestroyDefault - An implementation of a `PetscCtxDestroyFn` that uses `PetscFree()` to free the context 1871*49abdd8aSBarry Smith 1872*49abdd8aSBarry Smith Input Parameter: 1873*49abdd8aSBarry Smith . ctx - the context to be destroyed 1874*49abdd8aSBarry Smith 1875*49abdd8aSBarry Smith Level: intermediate 1876*49abdd8aSBarry Smith 1877*49abdd8aSBarry Smith Note: 1878*49abdd8aSBarry Smith This is not called directly, rather it is passed to `DMSetApplicationContextDestroy()`, `PetscContainerSetDestroy()`, 1879*49abdd8aSBarry Smith `PetscObjectContainterCreate()` and similar routines and then called by the destructor of the associated object. 1880*49abdd8aSBarry Smith 1881*49abdd8aSBarry Smith .seealso: `PetscObject`, `PetscCtxDestroyFn`, `PetscObjectDestroy()`, `DMSetApplicationContextDestroy()`, `PetscContainerSetDestroy()`, 1882*49abdd8aSBarry Smith `PetscObjectContainterCreate()` 1883*49abdd8aSBarry Smith @*/ 1884*49abdd8aSBarry Smith PETSC_EXTERN PetscErrorCode PetscCtxDestroyDefault(void **ctx) 1885*49abdd8aSBarry Smith { 1886*49abdd8aSBarry Smith PetscFunctionBegin; 1887*49abdd8aSBarry Smith PetscCall(PetscFree(*ctx)); 1888*49abdd8aSBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 1889*49abdd8aSBarry Smith } 1890