1 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 9 #if defined(PETSC_USE_LOG) 10 PETSC_INTERN PetscErrorCode PetscLogInitialize(void); 11 PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 12 #endif 13 14 #if defined(PETSC_SERIALIZE_FUNCTIONS) 15 PETSC_INTERN PetscFPT PetscFPTData; 16 PetscFPT PetscFPTData = 0; 17 #endif 18 19 #if defined(PETSC_HAVE_SAWS) 20 #include <petscviewersaws.h> 21 #endif 22 /* -----------------------------------------------------------------------------------------*/ 23 24 PETSC_INTERN FILE *petsc_history; 25 26 PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 27 PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 28 PETSC_INTERN PetscErrorCode PetscFunctionListPrintAll(void); 29 PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 30 PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 31 PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE**); 32 33 /* user may set this BEFORE calling PetscInitialize() */ 34 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 35 36 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 37 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 38 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 39 PetscMPIInt Petsc_Shared_keyval = MPI_KEYVAL_INVALID; 40 41 /* 42 Declare and set all the string names of the PETSc enums 43 */ 44 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",0}; 45 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",0}; 46 const char *const PetscDataTypes[] = {"INT","DOUBLE","COMPLEX","LONG","SHORT","FLOAT", 47 "CHAR","LOGICAL","ENUM","BOOL","LONGDOUBLE","OBJECT","FUNCTION","PetscDataType","PETSC_",0}; 48 49 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 50 PetscBool PetscPreLoadingOn = PETSC_FALSE; 51 52 PetscInt PetscHotRegionDepth; 53 54 #if defined(PETSC_HAVE_THREADSAFETY) 55 PetscSpinlock PetscViewerASCIISpinLockOpen; 56 PetscSpinlock PetscViewerASCIISpinLockStdout; 57 PetscSpinlock PetscViewerASCIISpinLockStderr; 58 PetscSpinlock PetscCommSpinLock; 59 #endif 60 61 /* 62 Checks the options database for initializations related to the 63 PETSc components 64 */ 65 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Components(void) 66 { 67 PetscBool flg1; 68 PetscErrorCode ierr; 69 70 PetscFunctionBegin; 71 ierr = PetscOptionsHasName(NULL,NULL,"-help",&flg1);CHKERRQ(ierr); 72 if (flg1) { 73 #if defined(PETSC_USE_LOG) 74 MPI_Comm comm = PETSC_COMM_WORLD; 75 ierr = (*PetscHelpPrintf)(comm,"------Additional PETSc component options--------\n");CHKERRQ(ierr); 76 ierr = (*PetscHelpPrintf)(comm," -log_exclude: <vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 77 ierr = (*PetscHelpPrintf)(comm," -info_exclude: <null,vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 78 ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr); 79 #endif 80 } 81 PetscFunctionReturn(0); 82 } 83 84 /* 85 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 86 87 Collective 88 89 Level: advanced 90 91 Notes: 92 this is called only by the PETSc MATLAB and Julia interface. Even though it might start MPI it sets the flag to 93 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 94 be called multiple times from MATLAB and Julia without the problem of trying to initialize MPI more than once. 95 96 Turns off PETSc signal handling because that can interact with MATLAB's signal handling causing random crashes. 97 98 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 99 */ 100 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 101 { 102 PetscErrorCode ierr; 103 int myargc = argc; 104 char **myargs = args; 105 106 PetscFunctionBegin; 107 ierr = PetscInitialize(&myargc,&myargs,filename,help);CHKERRQ(ierr); 108 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 109 PetscBeganMPI = PETSC_FALSE; 110 PetscFunctionReturn(ierr); 111 } 112 113 /* 114 Used by MATLAB and Julia interface to get communicator 115 */ 116 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 117 { 118 PetscFunctionBegin; 119 *comm = PETSC_COMM_SELF; 120 PetscFunctionReturn(0); 121 } 122 123 /*@C 124 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 125 the command line arguments. 126 127 Collective 128 129 Level: advanced 130 131 .seealso: PetscInitialize(), PetscInitializeFortran() 132 @*/ 133 PetscErrorCode PetscInitializeNoArguments(void) 134 { 135 PetscErrorCode ierr; 136 int argc = 0; 137 char **args = 0; 138 139 PetscFunctionBegin; 140 ierr = PetscInitialize(&argc,&args,NULL,NULL); 141 PetscFunctionReturn(ierr); 142 } 143 144 /*@ 145 PetscInitialized - Determine whether PETSc is initialized. 146 147 Level: beginner 148 149 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 150 @*/ 151 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 152 { 153 *isInitialized = PetscInitializeCalled; 154 return 0; 155 } 156 157 /*@ 158 PetscFinalized - Determine whether PetscFinalize() has been called yet 159 160 Level: developer 161 162 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 163 @*/ 164 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 165 { 166 *isFinalized = PetscFinalizeCalled; 167 return 0; 168 } 169 170 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(void); 171 172 /* 173 This function is the MPI reduction operation used to compute the sum of the 174 first half of the datatype and the max of the second half. 175 */ 176 MPI_Op MPIU_MAXSUM_OP = 0; 177 178 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 179 { 180 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 181 182 PetscFunctionBegin; 183 if (*datatype != MPIU_2INT) { 184 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 185 MPI_Abort(MPI_COMM_WORLD,1); 186 } 187 188 for (i=0; i<count; i++) { 189 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 190 xout[2*i+1] += xin[2*i+1]; 191 } 192 PetscFunctionReturnVoid(); 193 } 194 195 /* 196 Returns the max of the first entry owned by this processor and the 197 sum of the second entry. 198 199 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 200 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 201 there would be no place to store the both needed results. 202 */ 203 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 204 { 205 PetscErrorCode ierr; 206 207 PetscFunctionBegin; 208 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 209 { 210 struct {PetscInt max,sum;} work; 211 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 212 *max = work.max; 213 *sum = work.sum; 214 } 215 #else 216 { 217 PetscMPIInt size,rank; 218 struct {PetscInt max,sum;} *work; 219 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 220 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 221 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 222 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 223 *max = work[rank].max; 224 *sum = work[rank].sum; 225 ierr = PetscFree(work);CHKERRQ(ierr); 226 } 227 #endif 228 PetscFunctionReturn(0); 229 } 230 231 /* ----------------------------------------------------------------------------*/ 232 233 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 234 MPI_Op MPIU_SUM = 0; 235 236 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 237 { 238 PetscInt i,count = *cnt; 239 240 PetscFunctionBegin; 241 if (*datatype == MPIU_REAL) { 242 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 243 for (i=0; i<count; i++) xout[i] += xin[i]; 244 } 245 #if defined(PETSC_HAVE_COMPLEX) 246 else if (*datatype == MPIU_COMPLEX) { 247 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 248 for (i=0; i<count; i++) xout[i] += xin[i]; 249 } 250 #endif 251 else { 252 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 253 MPI_Abort(MPI_COMM_WORLD,1); 254 } 255 PetscFunctionReturnVoid(); 256 } 257 #endif 258 259 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 260 MPI_Op MPIU_MAX = 0; 261 MPI_Op MPIU_MIN = 0; 262 263 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 264 { 265 PetscInt i,count = *cnt; 266 267 PetscFunctionBegin; 268 if (*datatype == MPIU_REAL) { 269 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 270 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 271 } 272 #if defined(PETSC_HAVE_COMPLEX) 273 else if (*datatype == MPIU_COMPLEX) { 274 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 275 for (i=0; i<count; i++) { 276 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 277 } 278 } 279 #endif 280 else { 281 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 282 MPI_Abort(MPI_COMM_WORLD,1); 283 } 284 PetscFunctionReturnVoid(); 285 } 286 287 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 288 { 289 PetscInt i,count = *cnt; 290 291 PetscFunctionBegin; 292 if (*datatype == MPIU_REAL) { 293 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 294 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 295 } 296 #if defined(PETSC_HAVE_COMPLEX) 297 else if (*datatype == MPIU_COMPLEX) { 298 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 299 for (i=0; i<count; i++) { 300 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 301 } 302 } 303 #endif 304 else { 305 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 306 MPI_Abort(MPI_COMM_WORLD,1); 307 } 308 PetscFunctionReturnVoid(); 309 } 310 #endif 311 312 /* 313 Private routine to delete internal tag/name counter storage when a communicator is freed. 314 315 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 316 317 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 318 319 */ 320 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelCounter(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 321 { 322 PetscErrorCode ierr; 323 324 PetscFunctionBegin; 325 ierr = PetscInfo1(0,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 326 ierr = PetscFree(count_val);CHKERRMPI(ierr); 327 PetscFunctionReturn(MPI_SUCCESS); 328 } 329 330 /* 331 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 332 calls MPI_Comm_free(). 333 334 This is the only entry point for breaking the links between inner and outer comms. 335 336 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 337 338 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 339 340 */ 341 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Outer(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 342 { 343 PetscErrorCode ierr; 344 PetscMPIInt flg; 345 union {MPI_Comm comm; void *ptr;} icomm,ocomm; 346 347 PetscFunctionBegin; 348 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 349 icomm.ptr = attr_val; 350 351 ierr = MPI_Comm_get_attr(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 352 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected reference to outer comm"); 353 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm has reference to non-matching outer comm"); 354 ierr = MPI_Comm_delete_attr(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 355 ierr = PetscInfo1(0,"User MPI_Comm %ld is being freed after removing reference from inner PETSc comm to this outer comm\n",(long)comm);CHKERRMPI(ierr); 356 PetscFunctionReturn(MPI_SUCCESS); 357 } 358 359 /* 360 * This is invoked on the inner comm when Petsc_DelComm_Outer calls MPI_Comm_delete_attr. It should not be reached any other way. 361 */ 362 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Inner(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 363 { 364 PetscErrorCode ierr; 365 366 PetscFunctionBegin; 367 ierr = PetscInfo1(0,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 368 PetscFunctionReturn(MPI_SUCCESS); 369 } 370 371 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelShared(MPI_Comm,PetscMPIInt,void *,void *); 372 373 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 374 #if !defined(PETSC_WORDS_BIGENDIAN) 375 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 376 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 377 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 378 #endif 379 #endif 380 381 PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 382 383 int PetscGlobalArgc = 0; 384 char **PetscGlobalArgs = 0; 385 PetscSegBuffer PetscCitationsList; 386 387 PetscErrorCode PetscCitationsInitialize(void) 388 { 389 PetscErrorCode ierr; 390 391 PetscFunctionBegin; 392 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 393 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown and Peter Brune\n and Kris Buschelman and Lisandro Dalcin and Victor Eijkhout and William D. Gropp\n and Dinesh Kaushik and Matthew G. Knepley and Dave A. May and Lois Curfman McInnes\n and Richard Tran Mills and Todd Munson and Karl Rupp and Patrick Sanan\n and Barry F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.9},\n Institution = {Argonne National Laboratory},\n Year = {2018}\n}\n",NULL);CHKERRQ(ierr); 394 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 395 PetscFunctionReturn(0); 396 } 397 398 /*@C 399 PetscGetArgs - Allows you to access the raw command line arguments anywhere 400 after PetscInitialize() is called but before PetscFinalize(). 401 402 Not Collective 403 404 Output Parameters: 405 + argc - count of number of command line arguments 406 - args - the command line arguments 407 408 Level: intermediate 409 410 Notes: 411 This is usually used to pass the command line arguments into other libraries 412 that are called internally deep in PETSc or the application. 413 414 The first argument contains the program name as is normal for C arguments. 415 416 Concepts: command line arguments 417 418 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 419 420 @*/ 421 PetscErrorCode PetscGetArgs(int *argc,char ***args) 422 { 423 PetscFunctionBegin; 424 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 425 *argc = PetscGlobalArgc; 426 *args = PetscGlobalArgs; 427 PetscFunctionReturn(0); 428 } 429 430 /*@C 431 PetscGetArguments - Allows you to access the command line arguments anywhere 432 after PetscInitialize() is called but before PetscFinalize(). 433 434 Not Collective 435 436 Output Parameters: 437 . args - the command line arguments 438 439 Level: intermediate 440 441 Notes: 442 This does NOT start with the program name and IS null terminated (final arg is void) 443 444 Concepts: command line arguments 445 446 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 447 448 @*/ 449 PetscErrorCode PetscGetArguments(char ***args) 450 { 451 PetscInt i,argc = PetscGlobalArgc; 452 PetscErrorCode ierr; 453 454 PetscFunctionBegin; 455 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 456 if (!argc) {*args = 0; PetscFunctionReturn(0);} 457 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 458 for (i=0; i<argc-1; i++) { 459 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 460 } 461 (*args)[argc-1] = 0; 462 PetscFunctionReturn(0); 463 } 464 465 /*@C 466 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 467 468 Not Collective 469 470 Output Parameters: 471 . args - the command line arguments 472 473 Level: intermediate 474 475 Concepts: command line arguments 476 477 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 478 479 @*/ 480 PetscErrorCode PetscFreeArguments(char **args) 481 { 482 PetscInt i = 0; 483 PetscErrorCode ierr; 484 485 PetscFunctionBegin; 486 if (!args) PetscFunctionReturn(0); 487 while (args[i]) { 488 ierr = PetscFree(args[i]);CHKERRQ(ierr); 489 i++; 490 } 491 ierr = PetscFree(args);CHKERRQ(ierr); 492 PetscFunctionReturn(0); 493 } 494 495 #if defined(PETSC_HAVE_SAWS) 496 #include <petscconfiginfo.h> 497 498 PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 499 { 500 if (!PetscGlobalRank) { 501 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 502 int port; 503 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 504 size_t applinelen,introlen; 505 PetscErrorCode ierr; 506 char sawsurl[256]; 507 508 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 509 if (flg) { 510 char sawslog[PETSC_MAX_PATH_LEN]; 511 512 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 513 if (sawslog[0]) { 514 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 515 } else { 516 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 517 } 518 } 519 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 520 if (flg) { 521 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 522 } 523 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 524 if (selectport) { 525 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 526 PetscStackCallSAWs(SAWs_Set_Port,(port)); 527 } else { 528 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 529 if (flg) { 530 PetscStackCallSAWs(SAWs_Set_Port,(port)); 531 } 532 } 533 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 534 if (flg) { 535 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 536 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 537 } else { 538 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 539 if (flg) { 540 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 541 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 542 } 543 } 544 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 545 if (flg2) { 546 char jsdir[PETSC_MAX_PATH_LEN]; 547 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 548 ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr); 549 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 550 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 551 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 552 } 553 ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr); 554 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 555 introlen = 4096 + applinelen; 556 applinelen += 1024; 557 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 558 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 559 560 if (rootlocal) { 561 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 562 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 563 } 564 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 565 if (rootlocal && help) { 566 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help); 567 } else if (help) { 568 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help); 569 } else { 570 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options); 571 } 572 ierr = PetscFree(options);CHKERRQ(ierr); 573 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 574 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 575 "<center><h2> <a href=\"http://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 576 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 577 "%s",version,petscconfigureoptions,appline); 578 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 579 ierr = PetscFree(intro);CHKERRQ(ierr); 580 ierr = PetscFree(appline);CHKERRQ(ierr); 581 if (selectport) { 582 PetscBool silent; 583 584 ierr = SAWs_Initialize(); 585 /* another process may have grabbed the port so keep trying */ 586 while (ierr) { 587 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 588 PetscStackCallSAWs(SAWs_Set_Port,(port)); 589 ierr = SAWs_Initialize(); 590 } 591 592 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 593 if (!silent) { 594 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 595 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 596 } 597 } else { 598 PetscStackCallSAWs(SAWs_Initialize,()); 599 } 600 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 601 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 602 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 603 " Institution = {Argonne National Laboratory},\n" 604 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 605 } 606 PetscFunctionReturn(0); 607 } 608 #endif 609 610 /*@C 611 PetscInitialize - Initializes the PETSc database and MPI. 612 PetscInitialize() calls MPI_Init() if that has yet to be called, 613 so this routine should always be called near the beginning of 614 your program -- usually the very first line! 615 616 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 617 618 Input Parameters: 619 + argc - count of number of command line arguments 620 . args - the command line arguments 621 . file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for 622 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 623 - help - [optional] Help message to print, use NULL for no message 624 625 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 626 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 627 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 628 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 629 if different subcommunicators of the job are doing different things with PETSc. 630 631 Options Database Keys: 632 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 633 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 634 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 635 . -on_error_emacs <machinename> causes emacsclient to jump to error file 636 . -on_error_abort calls abort() when error detected (no traceback) 637 . -on_error_mpiabort calls MPI_abort() when error detected 638 . -error_output_stderr prints error messages to stderr instead of the default stdout 639 . -error_output_none does not print the error messages (but handles errors in the same way as if this was not called) 640 . -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger 641 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 642 . -stop_for_debugger - Print message on how to attach debugger manually to 643 process and wait (-debugger_pause) seconds for attachment 644 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) 645 . -malloc no - Indicates not to use error-checking malloc 646 . -malloc_debug - check for memory corruption at EVERY malloc or free 647 . -malloc_dump - prints a list of all unfreed memory at the end of the run 648 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds 649 . -fp_trap - Stops on floating point exceptions (Note that on the 650 IBM RS6000 this slows code by at least a factor of 10.) 651 . -no_signal_handler - Indicates not to trap error signals 652 . -shared_tmp - indicates /tmp directory is shared by all processors 653 . -not_shared_tmp - each processor has own /tmp 654 . -tmp - alternative name of /tmp directory 655 . -get_total_flops - returns total flops done by all processors 656 - -memory_view - Print memory usage at end of run 657 658 Options Database Keys for Profiling: 659 See Users-Manual: ch_profiling for details. 660 + -info <optional filename> - Prints verbose information to the screen 661 . -info_exclude <null,vec,mat,pc,ksp,snes,ts> - Excludes some of the verbose messages 662 . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 663 however it slows things down and gives a distorted view of the overall runtime. 664 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 665 hangs without running in the debugger). See PetscLogTraceBegin(). 666 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 667 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 668 summary is written to the file. See PetscLogView(). 669 . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 670 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 671 . -log [filename] - Logs basic profiline information See PetscLogDump(). 672 . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 673 - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 674 675 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 676 677 Options Database Keys for SAWs: 678 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 679 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 680 this is useful when you are running many jobs that utilize SAWs at the same time 681 . -saws_log <filename> - save a log of all SAWs communication 682 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 683 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 684 685 Environmental Variables: 686 + PETSC_TMP - alternative tmp directory 687 . PETSC_SHARED_TMP - tmp is shared by all processes 688 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 689 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 690 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 691 692 693 Level: beginner 694 695 Notes: 696 If for some reason you must call MPI_Init() separately, call 697 it before PetscInitialize(). 698 699 Fortran Version: 700 In Fortran this routine has the format 701 $ call PetscInitialize(file,ierr) 702 703 + ierr - error return code 704 - file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use PETSC_NULL_CHARACTER to not check for 705 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 706 707 Important Fortran Note: 708 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 709 null character string; you CANNOT just use NULL as 710 in the C version. See Users-Manual: ch_fortran for details. 711 712 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 713 calling PetscInitialize(). 714 715 Concepts: initializing PETSc 716 717 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 718 719 @*/ 720 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 721 { 722 PetscErrorCode ierr; 723 PetscMPIInt flag, size; 724 PetscBool flg = PETSC_TRUE; 725 char hostname[256]; 726 #if defined(PETSC_HAVE_HWLOC) 727 PetscViewer viewer; 728 #endif 729 730 PetscFunctionBegin; 731 if (PetscInitializeCalled) PetscFunctionReturn(0); 732 /* 733 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 734 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 735 MPICH v3.1 (Released Feburary 2014) 736 IBM MPI v2.1 (December 2014) 737 Intel® MPI Library v5.0 (2014) 738 Cray MPT v7.0.0 (June 2014) 739 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 740 listed above and since that time are compatible. 741 742 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 743 at compile time or runtime. Thus we will need to systematically track the allowed versions 744 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 745 to perform the checking. 746 747 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 748 749 Questions: 750 751 Should the checks for ABI incompatibility be only on the major version number below? 752 Presumably the output to stderr will be removed before a release. 753 */ 754 755 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 756 { 757 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 758 PetscMPIInt mpilibraryversionlength; 759 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 760 /* check for MPICH versions before MPI ABI initiative */ 761 #if defined(MPICH_VERSION) 762 #if MPICH_NUMVERSION < 30100000 763 { 764 char *ver,*lf; 765 flg = PETSC_FALSE; 766 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 767 if (ver) { 768 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 769 if (lf) { 770 *lf = 0; 771 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 772 } 773 } 774 if (!flg) { 775 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 776 return PETSC_ERR_MPI_LIB_INCOMP; 777 } 778 } 779 #endif 780 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 781 #elif defined(OMPI_MAJOR_VERSION) 782 { 783 char *ver,bs[32],*bsf; 784 flg = PETSC_FALSE; 785 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 786 if (ver) { 787 PetscSNPrintf(bs,32,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 788 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 789 if (bsf) flg = PETSC_TRUE; 790 } 791 if (!flg) { 792 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 793 return PETSC_ERR_MPI_LIB_INCOMP; 794 } 795 } 796 #endif 797 } 798 #endif 799 800 801 /* these must be initialized in a routine, not as a constant declaration*/ 802 PETSC_STDOUT = stdout; 803 PETSC_STDERR = stderr; 804 805 /* on Windows - set printf to default to printing 2 digit exponents */ 806 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 807 _set_output_format(_TWO_DIGIT_EXPONENT); 808 #endif 809 810 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 811 812 /* 813 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 814 it that it sets args[0] on all processors to be args[0] on the first processor. 815 */ 816 if (argc && *argc) { 817 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 818 } else { 819 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 820 } 821 822 ierr = MPI_Initialized(&flag);CHKERRQ(ierr); 823 if (!flag) { 824 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 825 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 826 { 827 PetscMPIInt provided; 828 ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr); 829 } 830 #else 831 ierr = MPI_Init(argc,args);CHKERRQ(ierr); 832 #endif 833 PetscBeganMPI = PETSC_TRUE; 834 } 835 if (argc && args) { 836 PetscGlobalArgc = *argc; 837 PetscGlobalArgs = *args; 838 } 839 PetscFinalizeCalled = PETSC_FALSE; 840 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 841 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 842 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 843 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 844 845 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 846 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr); 847 848 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRQ(ierr); 849 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRQ(ierr); 850 851 /* Done after init due to a bug in MPICH-GM? */ 852 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 853 854 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr); 855 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr); 856 857 MPIU_BOOL = MPI_INT; 858 MPIU_ENUM = MPI_INT; 859 860 /* 861 Initialized the global complex variable; this is because with 862 shared libraries the constructors for global variables 863 are not called; at least on IRIX. 864 */ 865 #if defined(PETSC_HAVE_COMPLEX) 866 { 867 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 868 PetscComplex ic(0.0,1.0); 869 PETSC_i = ic; 870 #else 871 PETSC_i = _Complex_I; 872 #endif 873 } 874 875 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 876 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 877 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 878 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr); 879 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr); 880 #endif 881 #endif /* PETSC_HAVE_COMPLEX */ 882 883 /* 884 Create the PETSc MPI reduction operator that sums of the first 885 half of the entries and maxes the second half. 886 */ 887 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRQ(ierr); 888 889 #if defined(PETSC_USE_REAL___FLOAT128) 890 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr); 891 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr); 892 #if defined(PETSC_HAVE_COMPLEX) 893 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr); 894 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr); 895 #endif 896 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 897 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 898 #elif defined(PETSC_USE_REAL___FP16) 899 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRQ(ierr); 900 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRQ(ierr); 901 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 902 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 903 #endif 904 905 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 906 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr); 907 #endif 908 909 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr); 910 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr); 911 912 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT) 913 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr); 914 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr); 915 #endif 916 917 918 /* 919 Attributes to be set on PETSc communicators 920 */ 921 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelCounter,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr); 922 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Outer,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr); 923 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Inner,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr); 924 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelShared,&Petsc_Shared_keyval,(void*)0);CHKERRQ(ierr); 925 926 /* 927 Build the options database 928 */ 929 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 930 931 /* call a second time so it can look in the options database */ 932 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 933 934 /* 935 Print main application help message 936 */ 937 ierr = PetscOptionsHasName(NULL,NULL,"-help",&flg);CHKERRQ(ierr); 938 if (help && flg) { 939 ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr); 940 } 941 ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr); 942 943 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 944 945 #if defined(PETSC_HAVE_SAWS) 946 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 947 #endif 948 949 /* Creates the logging data structures; this is enabled even if logging is not turned on */ 950 #if defined(PETSC_USE_LOG) 951 ierr = PetscLogInitialize();CHKERRQ(ierr); 952 #endif 953 954 /* 955 Load the dynamic libraries (on machines that support them), this registers all 956 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 957 */ 958 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 959 960 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 961 ierr = PetscInfo1(0,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 962 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 963 ierr = PetscInfo1(0,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 964 965 ierr = PetscOptionsCheckInitial_Components();CHKERRQ(ierr); 966 /* Check the options database for options related to the options database itself */ 967 ierr = PetscOptionsSetFromOptions(NULL);CHKERRQ(ierr); 968 969 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 970 /* 971 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 972 973 Currently not used because it is not supported by MPICH. 974 */ 975 #if !defined(PETSC_WORDS_BIGENDIAN) 976 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr); 977 #endif 978 #endif 979 980 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 981 if (flg) { 982 PetscInitializeCalled = PETSC_TRUE; 983 ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr); 984 } 985 986 /* 987 Setup building of stack frames for all function calls 988 */ 989 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 990 ierr = PetscStackCreate();CHKERRQ(ierr); 991 #endif 992 993 #if defined(PETSC_SERIALIZE_FUNCTIONS) 994 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 995 #endif 996 997 #if defined(PETSC_HAVE_HWLOC) 998 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 999 if (flg) { 1000 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1001 } 1002 #endif 1003 1004 /* 1005 Once we are completedly initialized then we can set this variables 1006 */ 1007 PetscInitializeCalled = PETSC_TRUE; 1008 PetscFunctionReturn(0); 1009 } 1010 1011 #if defined(PETSC_USE_LOG) 1012 PETSC_INTERN PetscObject *PetscObjects; 1013 PETSC_INTERN PetscInt PetscObjectsCounts; 1014 PETSC_INTERN PetscInt PetscObjectsMaxCounts; 1015 PETSC_INTERN PetscBool PetscObjectsLog; 1016 #endif 1017 1018 /* 1019 Frees all the MPI types and operations that PETSc may have created 1020 */ 1021 PetscErrorCode PetscFreeMPIResources(void) 1022 { 1023 PetscErrorCode ierr; 1024 1025 PetscFunctionBegin; 1026 #if defined(PETSC_USE_REAL___FLOAT128) 1027 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr); 1028 #if defined(PETSC_HAVE_COMPLEX) 1029 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr); 1030 #endif 1031 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1032 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1033 #elif defined(PETSC_USE_REAL___FP16) 1034 ierr = MPI_Type_free(&MPIU___FP16);CHKERRQ(ierr); 1035 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1036 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1037 #endif 1038 1039 #if defined(PETSC_HAVE_COMPLEX) 1040 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1041 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 1042 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr); 1043 #endif 1044 #endif 1045 1046 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1047 ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr); 1048 #endif 1049 1050 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr); 1051 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT) 1052 ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr); 1053 #endif 1054 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRQ(ierr); 1055 PetscFunctionReturn(0); 1056 } 1057 1058 /*@C 1059 PetscFinalize - Checks for options to be called at the conclusion 1060 of the program. MPI_Finalize() is called only if the user had not 1061 called MPI_Init() before calling PetscInitialize(). 1062 1063 Collective on PETSC_COMM_WORLD 1064 1065 Options Database Keys: 1066 + -options_table - Calls PetscOptionsView() 1067 . -options_left - Prints unused options that remain in the database 1068 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1069 . -mpidump - Calls PetscMPIDump() 1070 . -malloc_dump - Calls PetscMallocDump() 1071 . -malloc_info - Prints total memory usage 1072 - -malloc_log - Prints summary of memory usage 1073 1074 Level: beginner 1075 1076 Note: 1077 See PetscInitialize() for more general runtime options. 1078 1079 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1080 @*/ 1081 PetscErrorCode PetscFinalize(void) 1082 { 1083 PetscErrorCode ierr; 1084 PetscMPIInt rank; 1085 PetscInt nopt; 1086 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1087 PetscBool flg; 1088 #if defined(PETSC_USE_LOG) 1089 char mname[PETSC_MAX_PATH_LEN]; 1090 #endif 1091 1092 if (!PetscInitializeCalled) { 1093 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1094 return(PETSC_ERR_ARG_WRONGSTATE); 1095 } 1096 PetscFunctionBegin; 1097 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1098 1099 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 1100 1101 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1102 if (flg) { 1103 char *cits, filename[PETSC_MAX_PATH_LEN]; 1104 FILE *fd = PETSC_STDOUT; 1105 1106 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 1107 if (filename[0]) { 1108 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1109 } 1110 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1111 cits[0] = 0; 1112 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1113 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1114 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1115 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1116 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1117 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1118 ierr = PetscFree(cits);CHKERRQ(ierr); 1119 } 1120 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1121 1122 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1123 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1124 { 1125 PetscInt nmax = 2; 1126 char **buffs; 1127 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1128 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1129 if (flg1) { 1130 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1131 if (nmax == 1) { 1132 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1133 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1134 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1135 } 1136 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1137 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1138 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1139 } 1140 ierr = PetscFree(buffs);CHKERRQ(ierr); 1141 } 1142 { 1143 PetscInt nmax = 2; 1144 char **buffs; 1145 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1146 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1147 if (flg1) { 1148 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1149 if (nmax == 1) { 1150 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1151 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1152 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1153 } 1154 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1155 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1156 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1157 } 1158 ierr = PetscFree(buffs);CHKERRQ(ierr); 1159 } 1160 #endif 1161 /* 1162 It should be safe to cancel the options monitors, since we don't expect to be setting options 1163 here (at least that are worth monitoring). Monitors ought to be released so that they release 1164 whatever memory was allocated there before -malloc_dump reports unfreed memory. 1165 */ 1166 ierr = PetscOptionsMonitorCancel();CHKERRQ(ierr); 1167 1168 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1169 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1170 #endif 1171 1172 1173 #if defined(PETSC_HAVE_SAWS) 1174 flg = PETSC_FALSE; 1175 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1176 if (flg) { 1177 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1178 } 1179 #endif 1180 1181 #if defined(PETSC_HAVE_X) 1182 flg1 = PETSC_FALSE; 1183 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1184 if (flg1) { 1185 /* this is a crude hack, but better than nothing */ 1186 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1187 } 1188 #endif 1189 1190 #if !defined(PETSC_HAVE_THREADSAFETY) 1191 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1192 if (!flg2) { 1193 flg2 = PETSC_FALSE; 1194 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1195 } 1196 if (flg2) { 1197 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1198 } 1199 #endif 1200 1201 #if defined(PETSC_USE_LOG) 1202 flg1 = PETSC_FALSE; 1203 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1204 if (flg1) { 1205 PetscLogDouble flops = 0; 1206 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr); 1207 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1208 } 1209 #endif 1210 1211 1212 #if defined(PETSC_USE_LOG) 1213 #if defined(PETSC_HAVE_MPE) 1214 mname[0] = 0; 1215 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1216 if (flg1) { 1217 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1218 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1219 } 1220 #endif 1221 #endif 1222 1223 /* 1224 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1225 */ 1226 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1227 1228 #if defined(PETSC_USE_LOG) 1229 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1230 mname[0] = 0; 1231 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1232 if (flg1) { 1233 PetscViewer viewer; 1234 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1235 if (mname[0]) { 1236 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1237 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1238 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1239 } else { 1240 viewer = PETSC_VIEWER_STDOUT_WORLD; 1241 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1242 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1243 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1244 } 1245 } 1246 1247 /* 1248 Free any objects created by the last block of code. 1249 */ 1250 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1251 1252 mname[0] = 0; 1253 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1254 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr); 1255 if (flg1 || flg2) { 1256 if (mname[0]) PetscLogDump(mname); 1257 else PetscLogDump(0); 1258 } 1259 #endif 1260 1261 ierr = PetscStackDestroy();CHKERRQ(ierr); 1262 1263 flg1 = PETSC_FALSE; 1264 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1265 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1266 flg1 = PETSC_FALSE; 1267 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1268 if (flg1) { 1269 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1270 } 1271 flg1 = PETSC_FALSE; 1272 flg2 = PETSC_FALSE; 1273 /* preemptive call to avoid listing this option in options table as unused */ 1274 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1275 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1276 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1277 1278 if (flg2) { 1279 PetscViewer viewer; 1280 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1281 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1282 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1283 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1284 } 1285 1286 /* to prevent PETSc -options_left from warning */ 1287 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1288 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1289 1290 flg3 = PETSC_FALSE; /* default value is required */ 1291 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1292 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1293 if (flg3) { 1294 if (!flg2) { /* have not yet printed the options */ 1295 PetscViewer viewer; 1296 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1297 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1298 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1299 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1300 } 1301 if (!nopt) { 1302 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1303 } else if (nopt == 1) { 1304 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1305 } else { 1306 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1307 } 1308 } 1309 #if defined(PETSC_USE_DEBUG) 1310 if (nopt && !flg3 && !flg1) { 1311 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1312 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1313 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1314 } else if (nopt && flg3) { 1315 #else 1316 if (nopt && flg3) { 1317 #endif 1318 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1319 } 1320 1321 #if defined(PETSC_HAVE_SAWS) 1322 if (!PetscGlobalRank) { 1323 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1324 PetscStackCallSAWs(SAWs_Finalize,()); 1325 } 1326 #endif 1327 1328 #if defined(PETSC_USE_LOG) 1329 /* 1330 List all objects the user may have forgot to free 1331 */ 1332 if (PetscObjectsLog) { 1333 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1334 if (flg1) { 1335 MPI_Comm local_comm; 1336 char string[64]; 1337 1338 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr); 1339 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1340 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1341 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1342 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1343 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1344 } 1345 } 1346 #endif 1347 1348 #if defined(PETSC_USE_LOG) 1349 PetscObjectsCounts = 0; 1350 PetscObjectsMaxCounts = 0; 1351 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1352 #endif 1353 1354 /* 1355 Destroy any packages that registered a finalize 1356 */ 1357 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1358 1359 #if defined(PETSC_USE_LOG) 1360 ierr = PetscLogFinalize();CHKERRQ(ierr); 1361 #endif 1362 1363 /* 1364 Print PetscFunctionLists that have not been properly freed 1365 1366 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1367 */ 1368 1369 if (petsc_history) { 1370 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1371 petsc_history = 0; 1372 } 1373 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1374 1375 ierr = PetscInfoAllow(PETSC_FALSE,NULL);CHKERRQ(ierr); 1376 1377 #if !defined(PETSC_HAVE_THREADSAFETY) 1378 { 1379 char fname[PETSC_MAX_PATH_LEN]; 1380 FILE *fd; 1381 int err; 1382 1383 fname[0] = 0; 1384 1385 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr); 1386 flg2 = PETSC_FALSE; 1387 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr); 1388 #if defined(PETSC_USE_DEBUG) 1389 if (PETSC_RUNNING_ON_VALGRIND) flg2 = PETSC_FALSE; 1390 #else 1391 flg2 = PETSC_FALSE; /* Skip reporting for optimized builds regardless of -malloc_test */ 1392 #endif 1393 if (flg1 && fname[0]) { 1394 char sname[PETSC_MAX_PATH_LEN]; 1395 1396 PetscSNPrintf(sname,PETSC_MAX_PATH_LEN,"%s_%d",fname,rank); 1397 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1398 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1399 err = fclose(fd); 1400 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1401 } else if (flg1 || flg2) { 1402 MPI_Comm local_comm; 1403 1404 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1405 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1406 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1407 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1408 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1409 } 1410 } 1411 1412 { 1413 char fname[PETSC_MAX_PATH_LEN]; 1414 FILE *fd = NULL; 1415 1416 fname[0] = 0; 1417 1418 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_log",fname,250,&flg1);CHKERRQ(ierr); 1419 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_log_threshold",&flg2);CHKERRQ(ierr); 1420 if (flg1 && fname[0]) { 1421 int err; 1422 1423 if (!rank) { 1424 fd = fopen(fname,"w"); 1425 if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",fname); 1426 } 1427 ierr = PetscMallocDumpLog(fd);CHKERRQ(ierr); 1428 if (fd) { 1429 err = fclose(fd); 1430 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1431 } 1432 } else if (flg1 || flg2) { 1433 ierr = PetscMallocDumpLog(stdout);CHKERRQ(ierr); 1434 } 1435 } 1436 #endif 1437 1438 /* 1439 Close any open dynamic libraries 1440 */ 1441 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1442 1443 /* Can be destroyed only after all the options are used */ 1444 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1445 1446 PetscGlobalArgc = 0; 1447 PetscGlobalArgs = 0; 1448 1449 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1450 1451 /* 1452 Destroy any known inner MPI_Comm's and attributes pointing to them 1453 Note this will not destroy any new communicators the user has created. 1454 1455 If all PETSc objects were not destroyed those left over objects will have hanging references to 1456 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1457 */ 1458 { 1459 PetscCommCounter *counter; 1460 PetscMPIInt flg; 1461 MPI_Comm icomm; 1462 union {MPI_Comm comm; void *ptr;} ucomm; 1463 ierr = MPI_Comm_get_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1464 if (flg) { 1465 icomm = ucomm.comm; 1466 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1467 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1468 1469 ierr = MPI_Comm_delete_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1470 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1471 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1472 } 1473 ierr = MPI_Comm_get_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1474 if (flg) { 1475 icomm = ucomm.comm; 1476 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1477 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1478 1479 ierr = MPI_Comm_delete_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1480 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1481 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1482 } 1483 } 1484 1485 ierr = MPI_Comm_free_keyval(&Petsc_Counter_keyval);CHKERRQ(ierr); 1486 ierr = MPI_Comm_free_keyval(&Petsc_InnerComm_keyval);CHKERRQ(ierr); 1487 ierr = MPI_Comm_free_keyval(&Petsc_OuterComm_keyval);CHKERRQ(ierr); 1488 ierr = MPI_Comm_free_keyval(&Petsc_Shared_keyval);CHKERRQ(ierr); 1489 1490 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1491 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1492 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1493 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1494 1495 if (PetscBeganMPI) { 1496 #if defined(PETSC_HAVE_MPI_FINALIZED) 1497 PetscMPIInt flag; 1498 ierr = MPI_Finalized(&flag);CHKERRQ(ierr); 1499 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1500 #endif 1501 ierr = MPI_Finalize();CHKERRQ(ierr); 1502 } 1503 /* 1504 1505 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1506 the communicator has some outstanding requests on it. Specifically if the 1507 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1508 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1509 is never freed as it should be. Thus one may obtain messages of the form 1510 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1511 memory was not freed. 1512 1513 */ 1514 ierr = PetscMallocClear();CHKERRQ(ierr); 1515 1516 PetscInitializeCalled = PETSC_FALSE; 1517 PetscFinalizeCalled = PETSC_TRUE; 1518 PetscFunctionReturn(0); 1519 } 1520 1521 #if defined(PETSC_MISSING_LAPACK_lsame_) 1522 PETSC_EXTERN int lsame_(char *a,char *b) 1523 { 1524 if (*a == *b) return 1; 1525 if (*a + 32 == *b) return 1; 1526 if (*a - 32 == *b) return 1; 1527 return 0; 1528 } 1529 #endif 1530 1531 #if defined(PETSC_MISSING_LAPACK_lsame) 1532 PETSC_EXTERN int lsame(char *a,char *b) 1533 { 1534 if (*a == *b) return 1; 1535 if (*a + 32 == *b) return 1; 1536 if (*a - 32 == *b) return 1; 1537 return 0; 1538 } 1539 #endif 1540