1 #define PETSC_DESIRE_FEATURE_TEST_MACROS 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 9 #if defined(PETSC_USE_LOG) 10 PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 11 #endif 12 13 #if defined(PETSC_SERIALIZE_FUNCTIONS) 14 PETSC_INTERN PetscFPT PetscFPTData; 15 PetscFPT PetscFPTData = 0; 16 #endif 17 18 #if defined(PETSC_HAVE_SAWS) 19 #include <petscviewersaws.h> 20 #endif 21 22 /* -----------------------------------------------------------------------------------------*/ 23 24 PETSC_INTERN FILE *petsc_history; 25 26 PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 27 PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 28 PETSC_INTERN PetscErrorCode PetscFunctionListPrintAll(void); 29 PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 30 PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 31 PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE**); 32 33 /* user may set this BEFORE calling PetscInitialize() */ 34 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 35 36 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 37 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 38 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 39 PetscMPIInt Petsc_ShmComm_keyval = MPI_KEYVAL_INVALID; 40 41 /* 42 Declare and set all the string names of the PETSc enums 43 */ 44 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",NULL}; 45 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",NULL}; 46 47 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 48 PetscBool PetscPreLoadingOn = PETSC_FALSE; 49 50 PetscInt PetscHotRegionDepth; 51 52 #if defined(PETSC_HAVE_THREADSAFETY) 53 PetscSpinlock PetscViewerASCIISpinLockOpen; 54 PetscSpinlock PetscViewerASCIISpinLockStdout; 55 PetscSpinlock PetscViewerASCIISpinLockStderr; 56 PetscSpinlock PetscCommSpinLock; 57 #endif 58 59 /* 60 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 61 62 Collective 63 64 Level: advanced 65 66 Notes: 67 this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to 68 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 69 be called multiple times from Julia without the problem of trying to initialize MPI more than once. 70 71 Developer Note: Turns off PETSc signal handling to allow Julia to manage signals 72 73 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 74 */ 75 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 76 { 77 PetscErrorCode ierr; 78 int myargc = argc; 79 char **myargs = args; 80 81 PetscFunctionBegin; 82 ierr = PetscInitialize(&myargc,&myargs,filename,help);if (ierr) return ierr; 83 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 84 PetscBeganMPI = PETSC_FALSE; 85 PetscFunctionReturn(ierr); 86 } 87 88 /* 89 Used by Julia interface to get communicator 90 */ 91 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 92 { 93 PetscFunctionBegin; 94 *comm = PETSC_COMM_SELF; 95 PetscFunctionReturn(0); 96 } 97 98 /*@C 99 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 100 the command line arguments. 101 102 Collective 103 104 Level: advanced 105 106 .seealso: PetscInitialize(), PetscInitializeFortran() 107 @*/ 108 PetscErrorCode PetscInitializeNoArguments(void) 109 { 110 PetscErrorCode ierr; 111 int argc = 0; 112 char **args = NULL; 113 114 PetscFunctionBegin; 115 ierr = PetscInitialize(&argc,&args,NULL,NULL); 116 PetscFunctionReturn(ierr); 117 } 118 119 /*@ 120 PetscInitialized - Determine whether PETSc is initialized. 121 122 Level: beginner 123 124 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 125 @*/ 126 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 127 { 128 *isInitialized = PetscInitializeCalled; 129 return 0; 130 } 131 132 /*@ 133 PetscFinalized - Determine whether PetscFinalize() has been called yet 134 135 Level: developer 136 137 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 138 @*/ 139 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 140 { 141 *isFinalized = PetscFinalizeCalled; 142 return 0; 143 } 144 145 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(void); 146 147 /* 148 This function is the MPI reduction operation used to compute the sum of the 149 first half of the datatype and the max of the second half. 150 */ 151 MPI_Op MPIU_MAXSUM_OP = 0; 152 153 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 154 { 155 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 156 157 PetscFunctionBegin; 158 if (*datatype != MPIU_2INT) { 159 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 160 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 161 } 162 163 for (i=0; i<count; i++) { 164 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 165 xout[2*i+1] += xin[2*i+1]; 166 } 167 PetscFunctionReturnVoid(); 168 } 169 170 /* 171 Returns the max of the first entry owned by this processor and the 172 sum of the second entry. 173 174 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 175 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 176 there would be no place to store the both needed results. 177 */ 178 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 179 { 180 PetscErrorCode ierr; 181 182 PetscFunctionBegin; 183 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 184 { 185 struct {PetscInt max,sum;} work; 186 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 187 *max = work.max; 188 *sum = work.sum; 189 } 190 #else 191 { 192 PetscMPIInt size,rank; 193 struct {PetscInt max,sum;} *work; 194 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 195 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 196 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 197 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 198 *max = work[rank].max; 199 *sum = work[rank].sum; 200 ierr = PetscFree(work);CHKERRQ(ierr); 201 } 202 #endif 203 PetscFunctionReturn(0); 204 } 205 206 /* ----------------------------------------------------------------------------*/ 207 208 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 209 MPI_Op MPIU_SUM = 0; 210 211 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 212 { 213 PetscInt i,count = *cnt; 214 215 PetscFunctionBegin; 216 if (*datatype == MPIU_REAL) { 217 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 218 for (i=0; i<count; i++) xout[i] += xin[i]; 219 } 220 #if defined(PETSC_HAVE_COMPLEX) 221 else if (*datatype == MPIU_COMPLEX) { 222 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 223 for (i=0; i<count; i++) xout[i] += xin[i]; 224 } 225 #endif 226 else { 227 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 228 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 229 } 230 PetscFunctionReturnVoid(); 231 } 232 #endif 233 234 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 235 MPI_Op MPIU_MAX = 0; 236 MPI_Op MPIU_MIN = 0; 237 238 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 239 { 240 PetscInt i,count = *cnt; 241 242 PetscFunctionBegin; 243 if (*datatype == MPIU_REAL) { 244 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 245 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 246 } 247 #if defined(PETSC_HAVE_COMPLEX) 248 else if (*datatype == MPIU_COMPLEX) { 249 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 250 for (i=0; i<count; i++) { 251 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 252 } 253 } 254 #endif 255 else { 256 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 257 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 258 } 259 PetscFunctionReturnVoid(); 260 } 261 262 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 263 { 264 PetscInt i,count = *cnt; 265 266 PetscFunctionBegin; 267 if (*datatype == MPIU_REAL) { 268 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 269 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 270 } 271 #if defined(PETSC_HAVE_COMPLEX) 272 else if (*datatype == MPIU_COMPLEX) { 273 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 274 for (i=0; i<count; i++) { 275 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 276 } 277 } 278 #endif 279 else { 280 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 281 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 282 } 283 PetscFunctionReturnVoid(); 284 } 285 #endif 286 287 /* 288 Private routine to delete internal tag/name counter storage when a communicator is freed. 289 290 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 291 292 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 293 294 */ 295 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_Counter_Attr_Delete_Fn(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 296 { 297 PetscErrorCode ierr; 298 PetscCommCounter *counter=(PetscCommCounter*)count_val; 299 300 PetscFunctionBegin; 301 ierr = PetscInfo1(NULL,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 302 ierr = PetscFree(counter->iflags);CHKERRMPI(ierr); 303 ierr = PetscFree(counter);CHKERRMPI(ierr); 304 PetscFunctionReturn(MPI_SUCCESS); 305 } 306 307 /* 308 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 309 calls MPI_Comm_free(). 310 311 This is the only entry point for breaking the links between inner and outer comms. 312 313 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 314 315 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 316 317 */ 318 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_InnerComm_Attr_Delete_Fn(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 319 { 320 PetscErrorCode ierr; 321 union {MPI_Comm comm; void *ptr;} icomm; 322 323 PetscFunctionBegin; 324 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 325 icomm.ptr = attr_val; 326 if (PetscDefined(USE_DEBUG)) { 327 /* Error out if the inner/outer comms are not correctly linked through their Outer/InnterComm attributes */ 328 PetscMPIInt flg; 329 union {MPI_Comm comm; void *ptr;} ocomm; 330 ierr = MPI_Comm_get_attr(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 331 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner comm does not have OuterComm attribute"); 332 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner comm's OuterComm attribute does not point to outer PETSc comm"); 333 } 334 ierr = MPI_Comm_delete_attr(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 335 ierr = PetscInfo2(NULL,"User MPI_Comm %ld is being unlinked from inner PETSc comm %ld\n",(long)comm,(long)icomm.comm);CHKERRMPI(ierr); 336 PetscFunctionReturn(MPI_SUCCESS); 337 } 338 339 /* 340 * This is invoked on the inner comm when Petsc_InnerComm_Attr_Delete_Fn calls MPI_Comm_delete_attr(). It should not be reached any other way. 341 */ 342 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_OuterComm_Attr_Delete_Fn(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 343 { 344 PetscErrorCode ierr; 345 346 PetscFunctionBegin; 347 ierr = PetscInfo1(NULL,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 348 PetscFunctionReturn(MPI_SUCCESS); 349 } 350 351 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_ShmComm_Attr_Delete_Fn(MPI_Comm,PetscMPIInt,void *,void *); 352 353 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 354 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 355 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 356 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 357 #endif 358 359 PetscMPIInt PETSC_MPI_ERROR_CLASS=MPI_ERR_LASTCODE,PETSC_MPI_ERROR_CODE; 360 361 PETSC_INTERN int PetscGlobalArgc; 362 PETSC_INTERN char **PetscGlobalArgs; 363 int PetscGlobalArgc = 0; 364 char **PetscGlobalArgs = NULL; 365 PetscSegBuffer PetscCitationsList; 366 367 PetscErrorCode PetscCitationsInitialize(void) 368 { 369 PetscErrorCode ierr; 370 371 PetscFunctionBegin; 372 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 373 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown \n and Peter Brune and Kris Buschelman and Lisandro Dalcin and\n Victor Eijkhout and William D. Gropp and Dmitry Karpeyev and\n Dinesh Kaushik and Matthew G. Knepley and Dave A. May and Lois Curfman McInnes\n and Richard Tran Mills and Todd Munson and Karl Rupp and Patrick Sanan\n and Barry F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.11},\n Institution = {Argonne National Laboratory},\n Year = {2019}\n}\n",NULL);CHKERRQ(ierr); 374 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 375 PetscFunctionReturn(0); 376 } 377 378 static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */ 379 380 PetscErrorCode PetscSetProgramName(const char name[]) 381 { 382 PetscErrorCode ierr; 383 384 PetscFunctionBegin; 385 ierr = PetscStrncpy(programname,name,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 386 PetscFunctionReturn(0); 387 } 388 389 /*@C 390 PetscGetProgramName - Gets the name of the running program. 391 392 Not Collective 393 394 Input Parameter: 395 . len - length of the string name 396 397 Output Parameter: 398 . name - the name of the running program 399 400 Level: advanced 401 402 Notes: 403 The name of the program is copied into the user-provided character 404 array of length len. On some machines the program name includes 405 its entire path, so one should generally set len >= PETSC_MAX_PATH_LEN. 406 @*/ 407 PetscErrorCode PetscGetProgramName(char name[],size_t len) 408 { 409 PetscErrorCode ierr; 410 411 PetscFunctionBegin; 412 ierr = PetscStrncpy(name,programname,len);CHKERRQ(ierr); 413 PetscFunctionReturn(0); 414 } 415 416 /*@C 417 PetscGetArgs - Allows you to access the raw command line arguments anywhere 418 after PetscInitialize() is called but before PetscFinalize(). 419 420 Not Collective 421 422 Output Parameters: 423 + argc - count of number of command line arguments 424 - args - the command line arguments 425 426 Level: intermediate 427 428 Notes: 429 This is usually used to pass the command line arguments into other libraries 430 that are called internally deep in PETSc or the application. 431 432 The first argument contains the program name as is normal for C arguments. 433 434 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 435 436 @*/ 437 PetscErrorCode PetscGetArgs(int *argc,char ***args) 438 { 439 PetscFunctionBegin; 440 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 441 *argc = PetscGlobalArgc; 442 *args = PetscGlobalArgs; 443 PetscFunctionReturn(0); 444 } 445 446 /*@C 447 PetscGetArguments - Allows you to access the command line arguments anywhere 448 after PetscInitialize() is called but before PetscFinalize(). 449 450 Not Collective 451 452 Output Parameters: 453 . args - the command line arguments 454 455 Level: intermediate 456 457 Notes: 458 This does NOT start with the program name and IS null terminated (final arg is void) 459 460 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 461 462 @*/ 463 PetscErrorCode PetscGetArguments(char ***args) 464 { 465 PetscInt i,argc = PetscGlobalArgc; 466 PetscErrorCode ierr; 467 468 PetscFunctionBegin; 469 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 470 if (!argc) {*args = NULL; PetscFunctionReturn(0);} 471 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 472 for (i=0; i<argc-1; i++) { 473 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 474 } 475 (*args)[argc-1] = NULL; 476 PetscFunctionReturn(0); 477 } 478 479 /*@C 480 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 481 482 Not Collective 483 484 Output Parameters: 485 . args - the command line arguments 486 487 Level: intermediate 488 489 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 490 491 @*/ 492 PetscErrorCode PetscFreeArguments(char **args) 493 { 494 PetscInt i = 0; 495 PetscErrorCode ierr; 496 497 PetscFunctionBegin; 498 if (!args) PetscFunctionReturn(0); 499 while (args[i]) { 500 ierr = PetscFree(args[i]);CHKERRQ(ierr); 501 i++; 502 } 503 ierr = PetscFree(args);CHKERRQ(ierr); 504 PetscFunctionReturn(0); 505 } 506 507 #if defined(PETSC_HAVE_SAWS) 508 #include <petscconfiginfo.h> 509 510 PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 511 { 512 if (!PetscGlobalRank) { 513 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 514 int port; 515 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 516 size_t applinelen,introlen; 517 PetscErrorCode ierr; 518 char sawsurl[256]; 519 520 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 521 if (flg) { 522 char sawslog[PETSC_MAX_PATH_LEN]; 523 524 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 525 if (sawslog[0]) { 526 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 527 } else { 528 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 529 } 530 } 531 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 532 if (flg) { 533 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 534 } 535 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 536 if (selectport) { 537 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 538 PetscStackCallSAWs(SAWs_Set_Port,(port)); 539 } else { 540 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 541 if (flg) { 542 PetscStackCallSAWs(SAWs_Set_Port,(port)); 543 } 544 } 545 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 546 if (flg) { 547 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 548 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 549 } else { 550 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 551 if (flg) { 552 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 553 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 554 } 555 } 556 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 557 if (flg2) { 558 char jsdir[PETSC_MAX_PATH_LEN]; 559 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 560 ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr); 561 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 562 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 563 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 564 } 565 ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr); 566 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 567 introlen = 4096 + applinelen; 568 applinelen += 1024; 569 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 570 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 571 572 if (rootlocal) { 573 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 574 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 575 } 576 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 577 if (rootlocal && help) { 578 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help);CHKERRQ(ierr); 579 } else if (help) { 580 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help);CHKERRQ(ierr); 581 } else { 582 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options);CHKERRQ(ierr); 583 } 584 ierr = PetscFree(options);CHKERRQ(ierr); 585 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 586 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 587 "<center><h2> <a href=\"https://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 588 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 589 "%s",version,petscconfigureoptions,appline);CHKERRQ(ierr); 590 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 591 ierr = PetscFree(intro);CHKERRQ(ierr); 592 ierr = PetscFree(appline);CHKERRQ(ierr); 593 if (selectport) { 594 PetscBool silent; 595 596 ierr = SAWs_Initialize(); 597 /* another process may have grabbed the port so keep trying */ 598 while (ierr) { 599 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 600 PetscStackCallSAWs(SAWs_Set_Port,(port)); 601 ierr = SAWs_Initialize(); 602 } 603 604 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 605 if (!silent) { 606 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 607 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 608 } 609 } else { 610 PetscStackCallSAWs(SAWs_Initialize,()); 611 } 612 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 613 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 614 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 615 " Institution = {Argonne National Laboratory},\n" 616 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 617 } 618 PetscFunctionReturn(0); 619 } 620 #endif 621 622 /* Things must be done before MPI_Init() when MPI is not yet initialized, and can be shared between C init and Fortran init */ 623 PETSC_INTERN PetscErrorCode PetscPreMPIInit_Private(void) 624 { 625 PetscFunctionBegin; 626 #if defined(PETSC_HAVE_HWLOC_SOLARIS_BUG) 627 /* see MPI.py for details on this bug */ 628 (void) setenv("HWLOC_COMPONENTS","-x86",1); 629 #endif 630 PetscFunctionReturn(0); 631 } 632 633 #if defined(PETSC_HAVE_ADIOS) 634 #include <adios.h> 635 #include <adios_read.h> 636 int64_t Petsc_adios_group; 637 #endif 638 #if defined(PETSC_HAVE_ADIOS2) 639 #include <adios2_c.h> 640 #endif 641 #if defined(PETSC_HAVE_OPENMP) 642 #include <omp.h> 643 PetscInt PetscNumOMPThreads; 644 #endif 645 646 #if defined(PETSC_HAVE_DLFCN_H) 647 #include <dlfcn.h> 648 #endif 649 650 /*@C 651 PetscInitialize - Initializes the PETSc database and MPI. 652 PetscInitialize() calls MPI_Init() if that has yet to be called, 653 so this routine should always be called near the beginning of 654 your program -- usually the very first line! 655 656 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 657 658 Input Parameters: 659 + argc - count of number of command line arguments 660 . args - the command line arguments 661 . file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for 662 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 663 - help - [optional] Help message to print, use NULL for no message 664 665 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 666 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 667 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 668 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 669 if different subcommunicators of the job are doing different things with PETSc. 670 671 Options Database Keys: 672 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 673 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 674 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 675 . -on_error_emacs <machinename> - causes emacsclient to jump to error file 676 . -on_error_abort - calls abort() when error detected (no traceback) 677 . -on_error_mpiabort - calls MPI_abort() when error detected 678 . -error_output_stderr - prints error messages to stderr instead of the default stdout 679 . -error_output_none - does not print the error messages (but handles errors in the same way as if this was not called) 680 . -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger 681 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 682 . -stop_for_debugger - Print message on how to attach debugger manually to 683 process and wait (-debugger_pause) seconds for attachment 684 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) (deprecated, use -malloc_debug) 685 . -malloc no - Indicates not to use error-checking malloc (deprecated, use -malloc_debug no) 686 . -malloc_debug - check for memory corruption at EVERY malloc or free, see PetscMallocSetDebug() 687 . -malloc_dump - prints a list of all unfreed memory at the end of the run 688 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds, ignored in optimized build. May want to set in PETSC_OPTIONS environmental variable 689 . -malloc_view - show a list of all allocated memory during PetscFinalize() 690 . -malloc_view_threshold <t> - only list memory allocations of size greater than t with -malloc_view 691 . -fp_trap - Stops on floating point exceptions 692 . -no_signal_handler - Indicates not to trap error signals 693 . -shared_tmp - indicates /tmp directory is shared by all processors 694 . -not_shared_tmp - each processor has own /tmp 695 . -tmp - alternative name of /tmp directory 696 . -get_total_flops - returns total flops done by all processors 697 - -memory_view - Print memory usage at end of run 698 699 Options Database Keys for Profiling: 700 See Users-Manual: ch_profiling for details. 701 + -info [filename][:[~]<list,of,classnames>[:[~]self]] - Prints verbose information. See PetscInfo(). 702 . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 703 however it slows things down and gives a distorted view of the overall runtime. 704 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 705 hangs without running in the debugger). See PetscLogTraceBegin(). 706 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 707 . -log_view_memory - Includes in the summary from -log_view the memory used in each method, see PetscLogView(). 708 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 709 summary is written to the file. See PetscLogView(). 710 . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 711 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 712 . -log [filename] - Logs basic profiline information See PetscLogDump(). 713 . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 714 . -viewfromoptions on,off - Enable or disable XXXSetFromOptions() calls, for applications with many small solves turn this off 715 - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 716 717 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 718 719 Options Database Keys for SAWs: 720 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 721 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 722 this is useful when you are running many jobs that utilize SAWs at the same time 723 . -saws_log <filename> - save a log of all SAWs communication 724 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 725 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 726 727 Environmental Variables: 728 + PETSC_TMP - alternative tmp directory 729 . PETSC_SHARED_TMP - tmp is shared by all processes 730 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 731 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 732 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 733 734 735 Level: beginner 736 737 Notes: 738 If for some reason you must call MPI_Init() separately, call 739 it before PetscInitialize(). 740 741 Fortran Version: 742 In Fortran this routine has the format 743 $ call PetscInitialize(file,ierr) 744 745 + ierr - error return code 746 - file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use PETSC_NULL_CHARACTER to not check for 747 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 748 749 Important Fortran Note: 750 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 751 null character string; you CANNOT just use NULL as 752 in the C version. See Users-Manual: ch_fortran for details. 753 754 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 755 calling PetscInitialize(). 756 757 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 758 759 @*/ 760 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 761 { 762 PetscErrorCode ierr; 763 PetscMPIInt flag, size; 764 PetscBool flg = PETSC_TRUE; 765 char hostname[256]; 766 767 PetscFunctionBegin; 768 if (PetscInitializeCalled) PetscFunctionReturn(0); 769 /* 770 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 771 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 772 MPICH v3.1 (Released Feburary 2014) 773 IBM MPI v2.1 (December 2014) 774 Intel® MPI Library v5.0 (2014) 775 Cray MPT v7.0.0 (June 2014) 776 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 777 listed above and since that time are compatible. 778 779 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 780 at compile time or runtime. Thus we will need to systematically track the allowed versions 781 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 782 to perform the checking. 783 784 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 785 786 Questions: 787 788 Should the checks for ABI incompatibility be only on the major version number below? 789 Presumably the output to stderr will be removed before a release. 790 */ 791 792 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 793 { 794 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 795 PetscMPIInt mpilibraryversionlength; 796 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 797 /* check for MPICH versions before MPI ABI initiative */ 798 #if defined(MPICH_VERSION) 799 #if MPICH_NUMVERSION < 30100000 800 { 801 char *ver,*lf; 802 flg = PETSC_FALSE; 803 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 804 if (ver) { 805 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 806 if (lf) { 807 *lf = 0; 808 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 809 } 810 } 811 if (!flg) { 812 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 813 return PETSC_ERR_MPI_LIB_INCOMP; 814 } 815 } 816 #endif 817 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 818 #elif defined(OMPI_MAJOR_VERSION) 819 { 820 char *ver,bs[32],*bsf; 821 flg = PETSC_FALSE; 822 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 823 if (ver) { 824 PetscSNPrintf(bs,32,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 825 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 826 if (bsf) flg = PETSC_TRUE; 827 } 828 if (!flg) { 829 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 830 return PETSC_ERR_MPI_LIB_INCOMP; 831 } 832 } 833 #endif 834 } 835 #endif 836 837 #if defined(PETSC_HAVE_DLSYM) 838 { 839 PetscInt cnt = 0; 840 /* These symbols are currently in the OpenMPI and MPICH libraries; they may not always be, in that case the test will simply not detect the problem */ 841 if (dlsym(RTLD_DEFAULT,"ompi_mpi_init")) cnt++; 842 if (dlsym(RTLD_DEFAULT,"MPL_exit")) cnt++; 843 if (cnt > 1) { 844 fprintf(stderr,"PETSc Error --- Application was linked against both OpenMPI and MPICH based MPI libraries and will not run correctly\n"); 845 return PETSC_ERR_MPI_LIB_INCOMP; 846 } 847 } 848 #endif 849 850 /* these must be initialized in a routine, not as a constant declaration*/ 851 PETSC_STDOUT = stdout; 852 PETSC_STDERR = stderr; 853 854 /* on Windows - set printf to default to printing 2 digit exponents */ 855 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 856 _set_output_format(_TWO_DIGIT_EXPONENT); 857 #endif 858 859 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 860 861 /* 862 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 863 it that it sets args[0] on all processors to be args[0] on the first processor. 864 */ 865 if (argc && *argc) { 866 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 867 } else { 868 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 869 } 870 871 ierr = MPI_Initialized(&flag);CHKERRQ(ierr); 872 if (!flag) { 873 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 874 ierr = PetscPreMPIInit_Private();CHKERRQ(ierr); 875 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 876 { 877 PetscMPIInt provided; 878 ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr); 879 } 880 #else 881 ierr = MPI_Init(argc,args);CHKERRQ(ierr); 882 #endif 883 PetscBeganMPI = PETSC_TRUE; 884 } 885 886 if (argc && args) { 887 PetscGlobalArgc = *argc; 888 PetscGlobalArgs = *args; 889 } 890 PetscFinalizeCalled = PETSC_FALSE; 891 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 892 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 893 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 894 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 895 896 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 897 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr); 898 899 if (PETSC_MPI_ERROR_CLASS == MPI_ERR_LASTCODE) { 900 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRQ(ierr); 901 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRQ(ierr); 902 } 903 904 /* Done after init due to a bug in MPICH-GM? */ 905 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 906 907 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr); 908 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr); 909 910 MPIU_BOOL = MPI_INT; 911 MPIU_ENUM = MPI_INT; 912 MPIU_FORTRANADDR = (sizeof(void*) == sizeof(int)) ? MPI_INT : MPIU_INT64; 913 if (sizeof(size_t) == sizeof(unsigned)) MPIU_SIZE_T = MPI_UNSIGNED; 914 else if (sizeof(size_t) == sizeof(unsigned long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG; 915 #if defined(PETSC_SIZEOF_LONG_LONG) 916 else if (sizeof(size_t) == sizeof(unsigned long long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG_LONG; 917 #endif 918 else {(*PetscErrorPrintf)("PetscInitialize: Could not find MPI type for size_t\n"); return PETSC_ERR_SUP_SYS;} 919 920 /* 921 Initialized the global complex variable; this is because with 922 shared libraries the constructors for global variables 923 are not called; at least on IRIX. 924 */ 925 #if defined(PETSC_HAVE_COMPLEX) 926 { 927 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 928 PetscComplex ic(0.0,1.0); 929 PETSC_i = ic; 930 #else 931 PETSC_i = _Complex_I; 932 #endif 933 } 934 935 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 936 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 937 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 938 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr); 939 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr); 940 #endif 941 #endif /* PETSC_HAVE_COMPLEX */ 942 943 /* 944 Create the PETSc MPI reduction operator that sums of the first 945 half of the entries and maxes the second half. 946 */ 947 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRQ(ierr); 948 949 #if defined(PETSC_USE_REAL___FLOAT128) 950 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr); 951 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr); 952 #if defined(PETSC_HAVE_COMPLEX) 953 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr); 954 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr); 955 #endif 956 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 957 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 958 #elif defined(PETSC_USE_REAL___FP16) 959 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRQ(ierr); 960 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRQ(ierr); 961 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 962 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 963 #endif 964 965 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 966 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr); 967 #endif 968 969 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr); 970 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr); 971 972 #if defined(PETSC_USE_64BIT_INDICES) 973 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr); 974 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr); 975 #endif 976 977 978 /* 979 Attributes to be set on PETSc communicators 980 */ 981 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_Counter_Attr_Delete_Fn,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr); 982 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_InnerComm_Attr_Delete_Fn,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr); 983 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_OuterComm_Attr_Delete_Fn,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr); 984 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_ShmComm_Attr_Delete_Fn,&Petsc_ShmComm_keyval,(void*)0);CHKERRQ(ierr); 985 986 /* 987 Build the options database 988 */ 989 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 990 991 /* call a second time so it can look in the options database */ 992 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 993 994 /* 995 Print main application help message 996 */ 997 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 998 if (help && flg) { 999 ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr); 1000 ierr = PetscPrintf(PETSC_COMM_WORLD,"----------------------------------------\n");CHKERRQ(ierr); 1001 } 1002 ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr); 1003 1004 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 1005 1006 #if defined(PETSC_HAVE_SAWS) 1007 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 1008 #endif 1009 1010 /* 1011 Load the dynamic libraries (on machines that support them), this registers all 1012 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 1013 */ 1014 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 1015 1016 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 1017 ierr = PetscInfo1(NULL,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 1018 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 1019 ierr = PetscInfo1(NULL,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 1020 #if defined(PETSC_HAVE_OPENMP) 1021 { 1022 PetscBool omp_view_flag; 1023 char *threads = getenv("OMP_NUM_THREADS"); 1024 1025 if (threads) { 1026 ierr = PetscInfo1(NULL,"Number of OpenMP threads %s (given by OMP_NUM_THREADS)\n",threads);CHKERRQ(ierr); 1027 (void) sscanf(threads, "%" PetscInt_FMT,&PetscNumOMPThreads); 1028 } else { 1029 #define NMAX 10000 1030 int i; 1031 PetscScalar *x; 1032 ierr = PetscMalloc1(NMAX,&x);CHKERRQ(ierr); 1033 #pragma omp parallel for 1034 for (i=0; i<NMAX; i++) { 1035 x[i] = 0.0; 1036 PetscNumOMPThreads = (PetscInt) omp_get_num_threads(); 1037 } 1038 ierr = PetscFree(x);CHKERRQ(ierr); 1039 ierr = PetscInfo1(NULL,"Number of OpenMP threads %D (number not set with OMP_NUM_THREADS, chosen by system)\n",PetscNumOMPThreads);CHKERRQ(ierr); 1040 } 1041 ierr = PetscOptionsBegin(PETSC_COMM_WORLD,NULL,"OpenMP options","Sys");CHKERRQ(ierr); 1042 ierr = PetscOptionsInt("-omp_num_threads","Number of OpenMP threads to use (can also use environmental variable OMP_NUM_THREADS","None",PetscNumOMPThreads,&PetscNumOMPThreads,&flg);CHKERRQ(ierr); 1043 ierr = PetscOptionsName("-omp_view","Display OpenMP number of threads",NULL,&omp_view_flag);CHKERRQ(ierr); 1044 ierr = PetscOptionsEnd();CHKERRQ(ierr); 1045 if (flg) { 1046 ierr = PetscInfo1(NULL,"Number of OpenMP theads %D (given by -omp_num_threads)\n",PetscNumOMPThreads);CHKERRQ(ierr); 1047 omp_set_num_threads((int)PetscNumOMPThreads); 1048 } 1049 if (omp_view_flag) { 1050 ierr = PetscPrintf(PETSC_COMM_WORLD,"OpenMP: number of threads %D\n",PetscNumOMPThreads);CHKERRQ(ierr); 1051 } 1052 } 1053 #endif 1054 /* Check the options database for options related to the options database itself */ 1055 ierr = PetscOptionsSetFromOptions(NULL);CHKERRQ(ierr); 1056 1057 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 1058 /* 1059 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 1060 1061 Currently not used because it is not supported by MPICH. 1062 */ 1063 if (!PetscBinaryBigEndian()) { 1064 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr); 1065 } 1066 #endif 1067 1068 /* 1069 Setup building of stack frames for all function calls 1070 */ 1071 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 1072 ierr = PetscStackCreate();CHKERRQ(ierr); 1073 #endif 1074 1075 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1076 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 1077 #endif 1078 1079 #if defined(PETSC_HAVE_HWLOC) 1080 { 1081 PetscViewer viewer; 1082 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 1083 if (flg) { 1084 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1085 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1086 } 1087 } 1088 #endif 1089 1090 flg = PETSC_TRUE; 1091 ierr = PetscOptionsGetBool(NULL,NULL,"-viewfromoptions",&flg,NULL);CHKERRQ(ierr); 1092 if (!flg) {ierr = PetscOptionsPushGetViewerOff(PETSC_TRUE); CHKERRQ(ierr);} 1093 1094 #if defined(PETSC_HAVE_ADIOS) 1095 ierr = adios_init_noxml(PETSC_COMM_WORLD);CHKERRQ(ierr); 1096 ierr = adios_declare_group(&Petsc_adios_group,"PETSc","",adios_stat_default);CHKERRQ(ierr); 1097 ierr = adios_select_method(Petsc_adios_group,"MPI","","");CHKERRQ(ierr); 1098 ierr = adios_read_init_method(ADIOS_READ_METHOD_BP,PETSC_COMM_WORLD,"");CHKERRQ(ierr); 1099 #endif 1100 #if defined(PETSC_HAVE_ADIOS2) 1101 #endif 1102 1103 /* 1104 Once we are completedly initialized then we can set this variables 1105 */ 1106 PetscInitializeCalled = PETSC_TRUE; 1107 1108 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 1109 if (flg) {ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr);} 1110 PetscFunctionReturn(0); 1111 } 1112 1113 #if defined(PETSC_USE_LOG) 1114 PETSC_INTERN PetscObject *PetscObjects; 1115 PETSC_INTERN PetscInt PetscObjectsCounts; 1116 PETSC_INTERN PetscInt PetscObjectsMaxCounts; 1117 PETSC_INTERN PetscBool PetscObjectsLog; 1118 #endif 1119 1120 /* 1121 Frees all the MPI types and operations that PETSc may have created 1122 */ 1123 PetscErrorCode PetscFreeMPIResources(void) 1124 { 1125 PetscErrorCode ierr; 1126 1127 PetscFunctionBegin; 1128 #if defined(PETSC_USE_REAL___FLOAT128) 1129 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr); 1130 #if defined(PETSC_HAVE_COMPLEX) 1131 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr); 1132 #endif 1133 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1134 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1135 #elif defined(PETSC_USE_REAL___FP16) 1136 ierr = MPI_Type_free(&MPIU___FP16);CHKERRQ(ierr); 1137 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1138 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1139 #endif 1140 1141 #if defined(PETSC_HAVE_COMPLEX) 1142 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1143 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 1144 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr); 1145 #endif 1146 #endif 1147 1148 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1149 ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr); 1150 #endif 1151 1152 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr); 1153 #if defined(PETSC_USE_64BIT_INDICES) 1154 ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr); 1155 #endif 1156 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRQ(ierr); 1157 PetscFunctionReturn(0); 1158 } 1159 1160 /*@C 1161 PetscFinalize - Checks for options to be called at the conclusion 1162 of the program. MPI_Finalize() is called only if the user had not 1163 called MPI_Init() before calling PetscInitialize(). 1164 1165 Collective on PETSC_COMM_WORLD 1166 1167 Options Database Keys: 1168 + -options_view - Calls PetscOptionsView() 1169 . -options_left - Prints unused options that remain in the database 1170 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1171 . -mpidump - Calls PetscMPIDump() 1172 . -malloc_dump <optional filename> - Calls PetscMallocDump(), displays all memory allocated that has not been freed 1173 . -malloc_info - Prints total memory usage 1174 - -malloc_view <optional filename> - Prints list of all memory allocated and where 1175 1176 Level: beginner 1177 1178 Note: 1179 See PetscInitialize() for more general runtime options. 1180 1181 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1182 @*/ 1183 PetscErrorCode PetscFinalize(void) 1184 { 1185 PetscErrorCode ierr; 1186 PetscMPIInt rank; 1187 PetscInt nopt; 1188 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1189 PetscBool flg; 1190 #if defined(PETSC_USE_LOG) 1191 char mname[PETSC_MAX_PATH_LEN]; 1192 #endif 1193 1194 if (!PetscInitializeCalled) { 1195 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1196 return(PETSC_ERR_ARG_WRONGSTATE); 1197 } 1198 PetscFunctionBegin; 1199 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1200 1201 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 1202 #if defined(PETSC_HAVE_ADIOS) 1203 ierr = adios_read_finalize_method(ADIOS_READ_METHOD_BP_AGGREGATE);CHKERRQ(ierr); 1204 ierr = adios_finalize(rank);CHKERRQ(ierr); 1205 #endif 1206 #if defined(PETSC_HAVE_ADIOS2) 1207 #endif 1208 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1209 if (flg) { 1210 char *cits, filename[PETSC_MAX_PATH_LEN]; 1211 FILE *fd = PETSC_STDOUT; 1212 1213 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 1214 if (filename[0]) { 1215 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1216 } 1217 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1218 cits[0] = 0; 1219 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1220 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1221 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1222 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1223 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1224 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1225 ierr = PetscFree(cits);CHKERRQ(ierr); 1226 } 1227 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1228 1229 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1230 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1231 { 1232 PetscInt nmax = 2; 1233 char **buffs; 1234 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1235 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1236 if (flg1) { 1237 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1238 if (nmax == 1) { 1239 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1240 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1241 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1242 } 1243 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1244 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1245 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1246 } 1247 ierr = PetscFree(buffs);CHKERRQ(ierr); 1248 } 1249 { 1250 PetscInt nmax = 2; 1251 char **buffs; 1252 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1253 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1254 if (flg1) { 1255 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1256 if (nmax == 1) { 1257 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1258 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1259 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1260 } 1261 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1262 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1263 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1264 } 1265 ierr = PetscFree(buffs);CHKERRQ(ierr); 1266 } 1267 #endif 1268 /* 1269 It should be safe to cancel the options monitors, since we don't expect to be setting options 1270 here (at least that are worth monitoring). Monitors ought to be released so that they release 1271 whatever memory was allocated there before -malloc_dump reports unfreed memory. 1272 */ 1273 ierr = PetscOptionsMonitorCancel();CHKERRQ(ierr); 1274 1275 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1276 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1277 #endif 1278 1279 1280 #if defined(PETSC_HAVE_SAWS) 1281 flg = PETSC_FALSE; 1282 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1283 if (flg) { 1284 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1285 } 1286 #endif 1287 1288 #if defined(PETSC_HAVE_X) 1289 flg1 = PETSC_FALSE; 1290 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1291 if (flg1) { 1292 /* this is a crude hack, but better than nothing */ 1293 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1294 } 1295 #endif 1296 1297 #if !defined(PETSC_HAVE_THREADSAFETY) 1298 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1299 if (!flg2) { 1300 flg2 = PETSC_FALSE; 1301 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1302 } 1303 if (flg2) { 1304 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1305 } 1306 #endif 1307 1308 #if defined(PETSC_USE_LOG) 1309 flg1 = PETSC_FALSE; 1310 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1311 if (flg1) { 1312 PetscLogDouble flops = 0; 1313 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr); 1314 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1315 } 1316 #endif 1317 1318 1319 #if defined(PETSC_USE_LOG) 1320 #if defined(PETSC_HAVE_MPE) 1321 mname[0] = 0; 1322 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1323 if (flg1) { 1324 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1325 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1326 } 1327 #endif 1328 #endif 1329 1330 /* 1331 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1332 */ 1333 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1334 1335 #if defined(PETSC_USE_LOG) 1336 ierr = PetscOptionsPushGetViewerOff(PETSC_FALSE);CHKERRQ(ierr); 1337 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1338 ierr = PetscOptionsPopGetViewerOff();CHKERRQ(ierr); 1339 1340 mname[0] = 0; 1341 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1342 if (flg1) { 1343 PetscViewer viewer; 1344 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1345 if (mname[0]) { 1346 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1347 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1348 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1349 } else { 1350 viewer = PETSC_VIEWER_STDOUT_WORLD; 1351 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1352 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1353 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1354 } 1355 } 1356 1357 /* 1358 Free any objects created by the last block of code. 1359 */ 1360 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1361 1362 mname[0] = 0; 1363 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1364 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr); 1365 if (flg1 || flg2) {ierr = PetscLogDump(mname);CHKERRQ(ierr);} 1366 #endif 1367 1368 ierr = PetscStackDestroy();CHKERRQ(ierr); 1369 1370 flg1 = PETSC_FALSE; 1371 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1372 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1373 flg1 = PETSC_FALSE; 1374 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1375 if (flg1) { 1376 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1377 } 1378 flg1 = PETSC_FALSE; 1379 flg2 = PETSC_FALSE; 1380 /* preemptive call to avoid listing this option in options table as unused */ 1381 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1382 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1383 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1384 1385 if (flg2) { 1386 PetscViewer viewer; 1387 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1388 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1389 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1390 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1391 } 1392 1393 /* to prevent PETSc -options_left from warning */ 1394 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1395 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1396 1397 flg3 = PETSC_FALSE; /* default value is required */ 1398 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1399 #if defined(PETSC_USE_DEBUG) 1400 if (!flg1) flg3 = PETSC_TRUE; 1401 #endif 1402 if (flg3) { 1403 if (!flg2 && flg1) { /* have not yet printed the options */ 1404 PetscViewer viewer; 1405 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1406 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1407 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1408 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1409 } 1410 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1411 if (nopt) { 1412 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1413 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1414 if (nopt == 1) { 1415 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1416 } else { 1417 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1418 } 1419 } else if (flg3 && flg1) { 1420 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1421 } 1422 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1423 } 1424 1425 #if defined(PETSC_HAVE_SAWS) 1426 if (!PetscGlobalRank) { 1427 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1428 PetscStackCallSAWs(SAWs_Finalize,()); 1429 } 1430 #endif 1431 1432 #if defined(PETSC_USE_LOG) 1433 /* 1434 List all objects the user may have forgot to free 1435 */ 1436 if (PetscObjectsLog) { 1437 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1438 if (flg1) { 1439 MPI_Comm local_comm; 1440 char string[64]; 1441 1442 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr); 1443 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1444 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1445 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1446 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1447 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1448 } 1449 } 1450 #endif 1451 1452 #if defined(PETSC_USE_LOG) 1453 PetscObjectsCounts = 0; 1454 PetscObjectsMaxCounts = 0; 1455 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1456 #endif 1457 1458 /* 1459 Destroy any packages that registered a finalize 1460 */ 1461 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1462 1463 #if defined(PETSC_USE_LOG) 1464 ierr = PetscLogFinalize();CHKERRQ(ierr); 1465 #endif 1466 1467 /* 1468 Print PetscFunctionLists that have not been properly freed 1469 1470 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1471 */ 1472 1473 if (petsc_history) { 1474 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1475 petsc_history = NULL; 1476 } 1477 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1478 ierr = PetscInfoDestroy();CHKERRQ(ierr); 1479 1480 #if !defined(PETSC_HAVE_THREADSAFETY) 1481 if (!(PETSC_RUNNING_ON_VALGRIND)) { 1482 char fname[PETSC_MAX_PATH_LEN]; 1483 char sname[PETSC_MAX_PATH_LEN]; 1484 FILE *fd; 1485 int err; 1486 1487 flg2 = PETSC_FALSE; 1488 flg3 = PETSC_FALSE; 1489 #if defined(PETSC_USE_DEBUG) 1490 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr); 1491 #endif 1492 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_debug",&flg3,NULL);CHKERRQ(ierr); 1493 fname[0] = 0; 1494 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr); 1495 if (flg1 && fname[0]) { 1496 1497 PetscSNPrintf(sname,PETSC_MAX_PATH_LEN,"%s_%d",fname,rank); 1498 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1499 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1500 err = fclose(fd); 1501 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1502 } else if (flg1 || flg2 || flg3) { 1503 MPI_Comm local_comm; 1504 1505 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1506 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1507 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1508 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1509 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1510 } 1511 fname[0] = 0; 1512 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_view",fname,250,&flg1);CHKERRQ(ierr); 1513 if (flg1 && fname[0]) { 1514 1515 PetscSNPrintf(sname,PETSC_MAX_PATH_LEN,"%s_%d",fname,rank); 1516 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1517 ierr = PetscMallocView(fd);CHKERRQ(ierr); 1518 err = fclose(fd); 1519 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1520 } else if (flg1) { 1521 MPI_Comm local_comm; 1522 1523 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1524 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1525 ierr = PetscMallocView(stdout);CHKERRQ(ierr); 1526 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1527 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1528 } 1529 } 1530 #endif 1531 1532 /* 1533 Close any open dynamic libraries 1534 */ 1535 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1536 1537 /* Can be destroyed only after all the options are used */ 1538 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1539 1540 PetscGlobalArgc = 0; 1541 PetscGlobalArgs = NULL; 1542 1543 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1544 1545 /* 1546 Destroy any known inner MPI_Comm's and attributes pointing to them 1547 Note this will not destroy any new communicators the user has created. 1548 1549 If all PETSc objects were not destroyed those left over objects will have hanging references to 1550 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1551 */ 1552 { 1553 PetscCommCounter *counter; 1554 PetscMPIInt flg; 1555 MPI_Comm icomm; 1556 union {MPI_Comm comm; void *ptr;} ucomm; 1557 ierr = MPI_Comm_get_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1558 if (flg) { 1559 icomm = ucomm.comm; 1560 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1561 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1562 1563 ierr = MPI_Comm_delete_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1564 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1565 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1566 } 1567 ierr = MPI_Comm_get_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1568 if (flg) { 1569 icomm = ucomm.comm; 1570 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1571 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1572 1573 ierr = MPI_Comm_delete_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1574 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1575 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1576 } 1577 } 1578 1579 ierr = MPI_Comm_free_keyval(&Petsc_Counter_keyval);CHKERRQ(ierr); 1580 ierr = MPI_Comm_free_keyval(&Petsc_InnerComm_keyval);CHKERRQ(ierr); 1581 ierr = MPI_Comm_free_keyval(&Petsc_OuterComm_keyval);CHKERRQ(ierr); 1582 ierr = MPI_Comm_free_keyval(&Petsc_ShmComm_keyval);CHKERRQ(ierr); 1583 1584 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1585 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1586 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1587 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1588 1589 if (PetscBeganMPI) { 1590 #if defined(PETSC_HAVE_MPI_FINALIZED) 1591 PetscMPIInt flag; 1592 ierr = MPI_Finalized(&flag);CHKERRQ(ierr); 1593 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1594 #endif 1595 ierr = MPI_Finalize();CHKERRQ(ierr); 1596 } 1597 /* 1598 1599 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1600 the communicator has some outstanding requests on it. Specifically if the 1601 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1602 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1603 is never freed as it should be. Thus one may obtain messages of the form 1604 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1605 memory was not freed. 1606 1607 */ 1608 ierr = PetscMallocClear();CHKERRQ(ierr); 1609 1610 PetscInitializeCalled = PETSC_FALSE; 1611 PetscFinalizeCalled = PETSC_TRUE; 1612 PetscFunctionReturn(0); 1613 } 1614 1615 #if defined(PETSC_MISSING_LAPACK_lsame_) 1616 PETSC_EXTERN int lsame_(char *a,char *b) 1617 { 1618 if (*a == *b) return 1; 1619 if (*a + 32 == *b) return 1; 1620 if (*a - 32 == *b) return 1; 1621 return 0; 1622 } 1623 #endif 1624 1625 #if defined(PETSC_MISSING_LAPACK_lsame) 1626 PETSC_EXTERN int lsame(char *a,char *b) 1627 { 1628 if (*a == *b) return 1; 1629 if (*a + 32 == *b) return 1; 1630 if (*a - 32 == *b) return 1; 1631 return 0; 1632 } 1633 #endif 1634