1 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 9 #if defined(PETSC_USE_LOG) 10 PETSC_INTERN PetscErrorCode PetscLogInitialize(void); 11 PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 12 #endif 13 14 #if defined(PETSC_SERIALIZE_FUNCTIONS) 15 PETSC_INTERN PetscFPT PetscFPTData; 16 PetscFPT PetscFPTData = 0; 17 #endif 18 19 #if defined(PETSC_HAVE_SAWS) 20 #include <petscviewersaws.h> 21 #endif 22 /* -----------------------------------------------------------------------------------------*/ 23 24 PETSC_INTERN FILE *petsc_history; 25 26 PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 27 PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 28 PETSC_INTERN PetscErrorCode PetscFunctionListPrintAll(void); 29 PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 30 PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 31 PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE**); 32 33 /* user may set this BEFORE calling PetscInitialize() */ 34 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 35 36 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 37 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 38 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 39 PetscMPIInt Petsc_ShmComm_keyval = MPI_KEYVAL_INVALID; 40 41 /* 42 Declare and set all the string names of the PETSc enums 43 */ 44 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",0}; 45 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",0}; 46 47 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 48 PetscBool PetscPreLoadingOn = PETSC_FALSE; 49 50 PetscInt PetscHotRegionDepth; 51 52 #if defined(PETSC_HAVE_THREADSAFETY) 53 PetscSpinlock PetscViewerASCIISpinLockOpen; 54 PetscSpinlock PetscViewerASCIISpinLockStdout; 55 PetscSpinlock PetscViewerASCIISpinLockStderr; 56 PetscSpinlock PetscCommSpinLock; 57 #endif 58 59 /* 60 Checks the options database for initializations related to the 61 PETSc components 62 */ 63 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Components(void) 64 { 65 PetscBool flg; 66 PetscErrorCode ierr; 67 68 PetscFunctionBegin; 69 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 70 if (flg) { 71 #if defined(PETSC_USE_LOG) 72 MPI_Comm comm = PETSC_COMM_WORLD; 73 ierr = (*PetscHelpPrintf)(comm,"------Additional PETSc component options--------\n");CHKERRQ(ierr); 74 ierr = (*PetscHelpPrintf)(comm," -log_exclude: <vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 75 ierr = (*PetscHelpPrintf)(comm," -info_exclude: <null,vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 76 ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr); 77 #endif 78 } 79 PetscFunctionReturn(0); 80 } 81 82 /* 83 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 84 85 Collective 86 87 Level: advanced 88 89 Notes: 90 this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to 91 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 92 be called multiple times from Julia without the problem of trying to initialize MPI more than once. 93 94 Developer Note: Turns off PETSc signal handling to allow Julia to manage signals 95 96 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 97 */ 98 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 99 { 100 PetscErrorCode ierr; 101 int myargc = argc; 102 char **myargs = args; 103 104 PetscFunctionBegin; 105 ierr = PetscInitialize(&myargc,&myargs,filename,help);CHKERRQ(ierr); 106 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 107 PetscBeganMPI = PETSC_FALSE; 108 PetscFunctionReturn(ierr); 109 } 110 111 /* 112 Used by Julia interface to get communicator 113 */ 114 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 115 { 116 PetscFunctionBegin; 117 *comm = PETSC_COMM_SELF; 118 PetscFunctionReturn(0); 119 } 120 121 /*@C 122 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 123 the command line arguments. 124 125 Collective 126 127 Level: advanced 128 129 .seealso: PetscInitialize(), PetscInitializeFortran() 130 @*/ 131 PetscErrorCode PetscInitializeNoArguments(void) 132 { 133 PetscErrorCode ierr; 134 int argc = 0; 135 char **args = 0; 136 137 PetscFunctionBegin; 138 ierr = PetscInitialize(&argc,&args,NULL,NULL); 139 PetscFunctionReturn(ierr); 140 } 141 142 /*@ 143 PetscInitialized - Determine whether PETSc is initialized. 144 145 Level: beginner 146 147 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 148 @*/ 149 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 150 { 151 *isInitialized = PetscInitializeCalled; 152 return 0; 153 } 154 155 /*@ 156 PetscFinalized - Determine whether PetscFinalize() has been called yet 157 158 Level: developer 159 160 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 161 @*/ 162 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 163 { 164 *isFinalized = PetscFinalizeCalled; 165 return 0; 166 } 167 168 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(void); 169 170 /* 171 This function is the MPI reduction operation used to compute the sum of the 172 first half of the datatype and the max of the second half. 173 */ 174 MPI_Op MPIU_MAXSUM_OP = 0; 175 176 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 177 { 178 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 179 180 PetscFunctionBegin; 181 if (*datatype != MPIU_2INT) { 182 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 183 MPI_Abort(MPI_COMM_WORLD,1); 184 } 185 186 for (i=0; i<count; i++) { 187 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 188 xout[2*i+1] += xin[2*i+1]; 189 } 190 PetscFunctionReturnVoid(); 191 } 192 193 /* 194 Returns the max of the first entry owned by this processor and the 195 sum of the second entry. 196 197 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 198 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 199 there would be no place to store the both needed results. 200 */ 201 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 202 { 203 PetscErrorCode ierr; 204 205 PetscFunctionBegin; 206 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 207 { 208 struct {PetscInt max,sum;} work; 209 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 210 *max = work.max; 211 *sum = work.sum; 212 } 213 #else 214 { 215 PetscMPIInt size,rank; 216 struct {PetscInt max,sum;} *work; 217 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 218 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 219 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 220 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 221 *max = work[rank].max; 222 *sum = work[rank].sum; 223 ierr = PetscFree(work);CHKERRQ(ierr); 224 } 225 #endif 226 PetscFunctionReturn(0); 227 } 228 229 /* ----------------------------------------------------------------------------*/ 230 231 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 232 MPI_Op MPIU_SUM = 0; 233 234 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 235 { 236 PetscInt i,count = *cnt; 237 238 PetscFunctionBegin; 239 if (*datatype == MPIU_REAL) { 240 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 241 for (i=0; i<count; i++) xout[i] += xin[i]; 242 } 243 #if defined(PETSC_HAVE_COMPLEX) 244 else if (*datatype == MPIU_COMPLEX) { 245 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 246 for (i=0; i<count; i++) xout[i] += xin[i]; 247 } 248 #endif 249 else { 250 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 251 MPI_Abort(MPI_COMM_WORLD,1); 252 } 253 PetscFunctionReturnVoid(); 254 } 255 #endif 256 257 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 258 MPI_Op MPIU_MAX = 0; 259 MPI_Op MPIU_MIN = 0; 260 261 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 262 { 263 PetscInt i,count = *cnt; 264 265 PetscFunctionBegin; 266 if (*datatype == MPIU_REAL) { 267 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 268 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 269 } 270 #if defined(PETSC_HAVE_COMPLEX) 271 else if (*datatype == MPIU_COMPLEX) { 272 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 273 for (i=0; i<count; i++) { 274 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 275 } 276 } 277 #endif 278 else { 279 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 280 MPI_Abort(MPI_COMM_WORLD,1); 281 } 282 PetscFunctionReturnVoid(); 283 } 284 285 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 286 { 287 PetscInt i,count = *cnt; 288 289 PetscFunctionBegin; 290 if (*datatype == MPIU_REAL) { 291 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 292 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 293 } 294 #if defined(PETSC_HAVE_COMPLEX) 295 else if (*datatype == MPIU_COMPLEX) { 296 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 297 for (i=0; i<count; i++) { 298 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 299 } 300 } 301 #endif 302 else { 303 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 304 MPI_Abort(MPI_COMM_WORLD,1); 305 } 306 PetscFunctionReturnVoid(); 307 } 308 #endif 309 310 /* 311 Private routine to delete internal tag/name counter storage when a communicator is freed. 312 313 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 314 315 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 316 317 */ 318 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelCounter(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 319 { 320 PetscErrorCode ierr; 321 322 PetscFunctionBegin; 323 ierr = PetscInfo1(0,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 324 ierr = PetscFree(count_val);CHKERRMPI(ierr); 325 PetscFunctionReturn(MPI_SUCCESS); 326 } 327 328 /* 329 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 330 calls MPI_Comm_free(). 331 332 This is the only entry point for breaking the links between inner and outer comms. 333 334 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 335 336 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 337 338 */ 339 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Outer(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 340 { 341 PetscErrorCode ierr; 342 PetscMPIInt flg; 343 union {MPI_Comm comm; void *ptr;} icomm,ocomm; 344 345 PetscFunctionBegin; 346 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 347 icomm.ptr = attr_val; 348 349 ierr = MPI_Comm_get_attr(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 350 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected reference to outer comm"); 351 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm has reference to non-matching outer comm"); 352 ierr = MPI_Comm_delete_attr(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 353 ierr = PetscInfo1(0,"User MPI_Comm %ld is being freed after removing reference from inner PETSc comm to this outer comm\n",(long)comm);CHKERRMPI(ierr); 354 PetscFunctionReturn(MPI_SUCCESS); 355 } 356 357 /* 358 * This is invoked on the inner comm when Petsc_DelComm_Outer calls MPI_Comm_delete_attr. It should not be reached any other way. 359 */ 360 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Inner(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 361 { 362 PetscErrorCode ierr; 363 364 PetscFunctionBegin; 365 ierr = PetscInfo1(0,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 366 PetscFunctionReturn(MPI_SUCCESS); 367 } 368 369 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Shm(MPI_Comm,PetscMPIInt,void *,void *); 370 371 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 372 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 373 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 374 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 375 #endif 376 377 PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 378 379 PETSC_INTERN int PetscGlobalArgc; 380 PETSC_INTERN char **PetscGlobalArgs; 381 int PetscGlobalArgc = 0; 382 char **PetscGlobalArgs = 0; 383 PetscSegBuffer PetscCitationsList; 384 385 PetscErrorCode PetscCitationsInitialize(void) 386 { 387 PetscErrorCode ierr; 388 389 PetscFunctionBegin; 390 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 391 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown \n and Peter Brune and Kris Buschelman and Lisandro Dalcin and\n Victor Eijkhout and William D. Gropp and Dmitry Karpeyev and\n Dinesh Kaushik and Matthew G. Knepley and Dave A. May and Lois Curfman McInnes\n and Richard Tran Mills and Todd Munson and Karl Rupp and Patrick Sanan\n and Barry F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.11},\n Institution = {Argonne National Laboratory},\n Year = {2019}\n}\n",NULL);CHKERRQ(ierr); 392 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 393 PetscFunctionReturn(0); 394 } 395 396 static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */ 397 398 PetscErrorCode PetscSetProgramName(const char name[]) 399 { 400 PetscErrorCode ierr; 401 402 PetscFunctionBegin; 403 ierr = PetscStrncpy(programname,name,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 404 PetscFunctionReturn(0); 405 } 406 407 /*@C 408 PetscGetProgramName - Gets the name of the running program. 409 410 Not Collective 411 412 Input Parameter: 413 . len - length of the string name 414 415 Output Parameter: 416 . name - the name of the running program 417 418 Level: advanced 419 420 Notes: 421 The name of the program is copied into the user-provided character 422 array of length len. On some machines the program name includes 423 its entire path, so one should generally set len >= PETSC_MAX_PATH_LEN. 424 @*/ 425 PetscErrorCode PetscGetProgramName(char name[],size_t len) 426 { 427 PetscErrorCode ierr; 428 429 PetscFunctionBegin; 430 ierr = PetscStrncpy(name,programname,len);CHKERRQ(ierr); 431 PetscFunctionReturn(0); 432 } 433 434 /*@C 435 PetscGetArgs - Allows you to access the raw command line arguments anywhere 436 after PetscInitialize() is called but before PetscFinalize(). 437 438 Not Collective 439 440 Output Parameters: 441 + argc - count of number of command line arguments 442 - args - the command line arguments 443 444 Level: intermediate 445 446 Notes: 447 This is usually used to pass the command line arguments into other libraries 448 that are called internally deep in PETSc or the application. 449 450 The first argument contains the program name as is normal for C arguments. 451 452 Concepts: command line arguments 453 454 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 455 456 @*/ 457 PetscErrorCode PetscGetArgs(int *argc,char ***args) 458 { 459 PetscFunctionBegin; 460 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 461 *argc = PetscGlobalArgc; 462 *args = PetscGlobalArgs; 463 PetscFunctionReturn(0); 464 } 465 466 /*@C 467 PetscGetArguments - Allows you to access the command line arguments anywhere 468 after PetscInitialize() is called but before PetscFinalize(). 469 470 Not Collective 471 472 Output Parameters: 473 . args - the command line arguments 474 475 Level: intermediate 476 477 Notes: 478 This does NOT start with the program name and IS null terminated (final arg is void) 479 480 Concepts: command line arguments 481 482 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 483 484 @*/ 485 PetscErrorCode PetscGetArguments(char ***args) 486 { 487 PetscInt i,argc = PetscGlobalArgc; 488 PetscErrorCode ierr; 489 490 PetscFunctionBegin; 491 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 492 if (!argc) {*args = NULL; PetscFunctionReturn(0);} 493 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 494 for (i=0; i<argc-1; i++) { 495 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 496 } 497 (*args)[argc-1] = NULL; 498 PetscFunctionReturn(0); 499 } 500 501 /*@C 502 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 503 504 Not Collective 505 506 Output Parameters: 507 . args - the command line arguments 508 509 Level: intermediate 510 511 Concepts: command line arguments 512 513 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 514 515 @*/ 516 PetscErrorCode PetscFreeArguments(char **args) 517 { 518 PetscInt i = 0; 519 PetscErrorCode ierr; 520 521 PetscFunctionBegin; 522 if (!args) PetscFunctionReturn(0); 523 while (args[i]) { 524 ierr = PetscFree(args[i]);CHKERRQ(ierr); 525 i++; 526 } 527 ierr = PetscFree(args);CHKERRQ(ierr); 528 PetscFunctionReturn(0); 529 } 530 531 #if defined(PETSC_HAVE_SAWS) 532 #include <petscconfiginfo.h> 533 534 PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 535 { 536 if (!PetscGlobalRank) { 537 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 538 int port; 539 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 540 size_t applinelen,introlen; 541 PetscErrorCode ierr; 542 char sawsurl[256]; 543 544 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 545 if (flg) { 546 char sawslog[PETSC_MAX_PATH_LEN]; 547 548 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 549 if (sawslog[0]) { 550 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 551 } else { 552 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 553 } 554 } 555 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 556 if (flg) { 557 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 558 } 559 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 560 if (selectport) { 561 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 562 PetscStackCallSAWs(SAWs_Set_Port,(port)); 563 } else { 564 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 565 if (flg) { 566 PetscStackCallSAWs(SAWs_Set_Port,(port)); 567 } 568 } 569 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 570 if (flg) { 571 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 572 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 573 } else { 574 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 575 if (flg) { 576 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 577 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 578 } 579 } 580 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 581 if (flg2) { 582 char jsdir[PETSC_MAX_PATH_LEN]; 583 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 584 ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr); 585 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 586 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 587 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 588 } 589 ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr); 590 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 591 introlen = 4096 + applinelen; 592 applinelen += 1024; 593 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 594 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 595 596 if (rootlocal) { 597 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 598 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 599 } 600 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 601 if (rootlocal && help) { 602 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help);CHKERRQ(ierr); 603 } else if (help) { 604 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help);CHKERRQ(ierr); 605 } else { 606 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options);CHKERRQ(ierr); 607 } 608 ierr = PetscFree(options);CHKERRQ(ierr); 609 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 610 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 611 "<center><h2> <a href=\"https://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 612 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 613 "%s",version,petscconfigureoptions,appline);CHKERRQ(ierr); 614 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 615 ierr = PetscFree(intro);CHKERRQ(ierr); 616 ierr = PetscFree(appline);CHKERRQ(ierr); 617 if (selectport) { 618 PetscBool silent; 619 620 ierr = SAWs_Initialize(); 621 /* another process may have grabbed the port so keep trying */ 622 while (ierr) { 623 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 624 PetscStackCallSAWs(SAWs_Set_Port,(port)); 625 ierr = SAWs_Initialize(); 626 } 627 628 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 629 if (!silent) { 630 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 631 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 632 } 633 } else { 634 PetscStackCallSAWs(SAWs_Initialize,()); 635 } 636 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 637 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 638 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 639 " Institution = {Argonne National Laboratory},\n" 640 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 641 } 642 PetscFunctionReturn(0); 643 } 644 #endif 645 646 #if defined(PETSC_HAVE_ADIOS) 647 #include <adios.h> 648 #include <adios_read.h> 649 int64_t Petsc_adios_group; 650 #endif 651 #if defined(PETSC_HAVE_ADIOS2) 652 #include <adios2_c.h> 653 #endif 654 655 /*@C 656 PetscInitialize - Initializes the PETSc database and MPI. 657 PetscInitialize() calls MPI_Init() if that has yet to be called, 658 so this routine should always be called near the beginning of 659 your program -- usually the very first line! 660 661 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 662 663 Input Parameters: 664 + argc - count of number of command line arguments 665 . args - the command line arguments 666 . file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for 667 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 668 - help - [optional] Help message to print, use NULL for no message 669 670 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 671 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 672 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 673 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 674 if different subcommunicators of the job are doing different things with PETSc. 675 676 Options Database Keys: 677 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 678 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 679 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 680 . -on_error_emacs <machinename> - causes emacsclient to jump to error file 681 . -on_error_abort - calls abort() when error detected (no traceback) 682 . -on_error_mpiabort - calls MPI_abort() when error detected 683 . -error_output_stderr - prints error messages to stderr instead of the default stdout 684 . -error_output_none - does not print the error messages (but handles errors in the same way as if this was not called) 685 . -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger 686 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 687 . -stop_for_debugger - Print message on how to attach debugger manually to 688 process and wait (-debugger_pause) seconds for attachment 689 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) 690 . -malloc no - Indicates not to use error-checking malloc 691 . -malloc_debug - check for memory corruption at EVERY malloc or free 692 . -malloc_dump - prints a list of all unfreed memory at the end of the run 693 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds 694 . -fp_trap - Stops on floating point exceptions (Note that on the 695 IBM RS6000 this slows code by at least a factor of 10.) 696 . -no_signal_handler - Indicates not to trap error signals 697 . -shared_tmp - indicates /tmp directory is shared by all processors 698 . -not_shared_tmp - each processor has own /tmp 699 . -tmp - alternative name of /tmp directory 700 . -get_total_flops - returns total flops done by all processors 701 - -memory_view - Print memory usage at end of run 702 703 Options Database Keys for Profiling: 704 See Users-Manual: ch_profiling for details. 705 + -info <optional filename> - Prints verbose information to the screen 706 . -info_exclude <null,vec,mat,pc,ksp,snes,ts> - Excludes some of the verbose messages 707 . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 708 however it slows things down and gives a distorted view of the overall runtime. 709 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 710 hangs without running in the debugger). See PetscLogTraceBegin(). 711 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 712 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 713 summary is written to the file. See PetscLogView(). 714 . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 715 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 716 . -log [filename] - Logs basic profiline information See PetscLogDump(). 717 . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 718 . -viewfromoptions on,off - Enable or disable XXXSetFromOptions() calls, for applications with many small solves turn this off 719 - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 720 721 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 722 723 Options Database Keys for SAWs: 724 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 725 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 726 this is useful when you are running many jobs that utilize SAWs at the same time 727 . -saws_log <filename> - save a log of all SAWs communication 728 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 729 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 730 731 Environmental Variables: 732 + PETSC_TMP - alternative tmp directory 733 . PETSC_SHARED_TMP - tmp is shared by all processes 734 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 735 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 736 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 737 738 739 Level: beginner 740 741 Notes: 742 If for some reason you must call MPI_Init() separately, call 743 it before PetscInitialize(). 744 745 Fortran Version: 746 In Fortran this routine has the format 747 $ call PetscInitialize(file,ierr) 748 749 + ierr - error return code 750 - file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use PETSC_NULL_CHARACTER to not check for 751 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 752 753 Important Fortran Note: 754 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 755 null character string; you CANNOT just use NULL as 756 in the C version. See Users-Manual: ch_fortran for details. 757 758 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 759 calling PetscInitialize(). 760 761 Concepts: initializing PETSc 762 763 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 764 765 @*/ 766 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 767 { 768 PetscErrorCode ierr; 769 PetscMPIInt flag, size; 770 PetscBool flg = PETSC_TRUE; 771 char hostname[256]; 772 773 PetscFunctionBegin; 774 if (PetscInitializeCalled) PetscFunctionReturn(0); 775 /* 776 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 777 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 778 MPICH v3.1 (Released Feburary 2014) 779 IBM MPI v2.1 (December 2014) 780 Intel® MPI Library v5.0 (2014) 781 Cray MPT v7.0.0 (June 2014) 782 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 783 listed above and since that time are compatible. 784 785 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 786 at compile time or runtime. Thus we will need to systematically track the allowed versions 787 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 788 to perform the checking. 789 790 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 791 792 Questions: 793 794 Should the checks for ABI incompatibility be only on the major version number below? 795 Presumably the output to stderr will be removed before a release. 796 */ 797 798 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 799 { 800 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 801 PetscMPIInt mpilibraryversionlength; 802 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 803 /* check for MPICH versions before MPI ABI initiative */ 804 #if defined(MPICH_VERSION) 805 #if MPICH_NUMVERSION < 30100000 806 { 807 char *ver,*lf; 808 flg = PETSC_FALSE; 809 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 810 if (ver) { 811 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 812 if (lf) { 813 *lf = 0; 814 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 815 } 816 } 817 if (!flg) { 818 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 819 return PETSC_ERR_MPI_LIB_INCOMP; 820 } 821 } 822 #endif 823 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 824 #elif defined(OMPI_MAJOR_VERSION) 825 { 826 char *ver,bs[32],*bsf; 827 flg = PETSC_FALSE; 828 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 829 if (ver) { 830 PetscSNPrintf(bs,32,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 831 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 832 if (bsf) flg = PETSC_TRUE; 833 } 834 if (!flg) { 835 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 836 return PETSC_ERR_MPI_LIB_INCOMP; 837 } 838 } 839 #endif 840 } 841 #endif 842 843 844 /* these must be initialized in a routine, not as a constant declaration*/ 845 PETSC_STDOUT = stdout; 846 PETSC_STDERR = stderr; 847 848 /* on Windows - set printf to default to printing 2 digit exponents */ 849 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 850 _set_output_format(_TWO_DIGIT_EXPONENT); 851 #endif 852 853 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 854 855 /* 856 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 857 it that it sets args[0] on all processors to be args[0] on the first processor. 858 */ 859 if (argc && *argc) { 860 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 861 } else { 862 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 863 } 864 865 ierr = MPI_Initialized(&flag);CHKERRQ(ierr); 866 if (!flag) { 867 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 868 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 869 { 870 PetscMPIInt provided; 871 ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr); 872 } 873 #else 874 ierr = MPI_Init(argc,args);CHKERRQ(ierr); 875 #endif 876 PetscBeganMPI = PETSC_TRUE; 877 } 878 if (argc && args) { 879 PetscGlobalArgc = *argc; 880 PetscGlobalArgs = *args; 881 } 882 PetscFinalizeCalled = PETSC_FALSE; 883 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 884 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 885 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 886 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 887 888 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 889 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr); 890 891 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRQ(ierr); 892 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRQ(ierr); 893 894 /* Done after init due to a bug in MPICH-GM? */ 895 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 896 897 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr); 898 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr); 899 900 MPIU_BOOL = MPI_INT; 901 MPIU_ENUM = MPI_INT; 902 MPIU_FORTRANADDR = (sizeof(void*) == sizeof(int)) ? MPI_INT : MPIU_INT64; 903 904 /* 905 Initialized the global complex variable; this is because with 906 shared libraries the constructors for global variables 907 are not called; at least on IRIX. 908 */ 909 #if defined(PETSC_HAVE_COMPLEX) 910 { 911 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 912 PetscComplex ic(0.0,1.0); 913 PETSC_i = ic; 914 #else 915 PETSC_i = _Complex_I; 916 #endif 917 } 918 919 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 920 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 921 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 922 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr); 923 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr); 924 #endif 925 #endif /* PETSC_HAVE_COMPLEX */ 926 927 /* 928 Create the PETSc MPI reduction operator that sums of the first 929 half of the entries and maxes the second half. 930 */ 931 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRQ(ierr); 932 933 #if defined(PETSC_USE_REAL___FLOAT128) 934 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr); 935 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr); 936 #if defined(PETSC_HAVE_COMPLEX) 937 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr); 938 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr); 939 #endif 940 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 941 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 942 #elif defined(PETSC_USE_REAL___FP16) 943 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRQ(ierr); 944 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRQ(ierr); 945 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 946 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 947 #endif 948 949 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 950 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr); 951 #endif 952 953 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr); 954 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr); 955 956 #if defined(PETSC_USE_64BIT_INDICES) 957 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr); 958 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr); 959 #endif 960 961 962 /* 963 Attributes to be set on PETSc communicators 964 */ 965 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelCounter,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr); 966 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Outer,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr); 967 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Inner,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr); 968 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Shm,&Petsc_ShmComm_keyval,(void*)0);CHKERRQ(ierr); 969 970 /* 971 Build the options database 972 */ 973 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 974 975 /* call a second time so it can look in the options database */ 976 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 977 978 /* 979 Print main application help message 980 */ 981 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 982 if (help && flg) { 983 ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr); 984 } 985 ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr); 986 987 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 988 989 #if defined(PETSC_HAVE_SAWS) 990 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 991 #endif 992 993 /* Creates the logging data structures; this is enabled even if logging is not turned on */ 994 #if defined(PETSC_USE_LOG) 995 ierr = PetscLogInitialize();CHKERRQ(ierr); 996 #endif 997 998 /* 999 Load the dynamic libraries (on machines that support them), this registers all 1000 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 1001 */ 1002 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 1003 1004 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 1005 ierr = PetscInfo1(0,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 1006 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 1007 ierr = PetscInfo1(0,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 1008 1009 ierr = PetscOptionsCheckInitial_Components();CHKERRQ(ierr); 1010 /* Check the options database for options related to the options database itself */ 1011 ierr = PetscOptionsSetFromOptions(NULL);CHKERRQ(ierr); 1012 1013 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 1014 /* 1015 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 1016 1017 Currently not used because it is not supported by MPICH. 1018 */ 1019 if (!PetscBinaryBigEndian()) { 1020 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr); 1021 } 1022 #endif 1023 1024 /* 1025 Setup building of stack frames for all function calls 1026 */ 1027 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 1028 ierr = PetscStackCreate();CHKERRQ(ierr); 1029 #endif 1030 1031 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1032 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 1033 #endif 1034 1035 #if defined(PETSC_HAVE_HWLOC) 1036 { 1037 PetscViewer viewer; 1038 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 1039 if (flg) { 1040 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1041 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1042 } 1043 } 1044 #endif 1045 1046 flg = PETSC_TRUE; 1047 ierr = PetscOptionsGetBool(NULL,NULL,"-viewfromoptions",&flg,NULL);CHKERRQ(ierr); 1048 if (!flg) {ierr = PetscOptionsPushGetViewerOff(PETSC_TRUE); CHKERRQ(ierr);} 1049 1050 #if defined(PETSC_HAVE_ADIOS) 1051 ierr = adios_init_noxml(PETSC_COMM_WORLD);CHKERRQ(ierr); 1052 ierr = adios_declare_group(&Petsc_adios_group,"PETSc","",adios_stat_default);CHKERRQ(ierr); 1053 ierr = adios_select_method(Petsc_adios_group,"MPI","","");CHKERRQ(ierr); 1054 ierr = adios_read_init_method(ADIOS_READ_METHOD_BP,PETSC_COMM_WORLD,"");CHKERRQ(ierr); 1055 #endif 1056 #if defined(PETSC_HAVE_ADIOS2) 1057 #endif 1058 1059 /* 1060 Once we are completedly initialized then we can set this variables 1061 */ 1062 PetscInitializeCalled = PETSC_TRUE; 1063 1064 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 1065 if (flg) {ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr);} 1066 PetscFunctionReturn(0); 1067 } 1068 1069 #if defined(PETSC_USE_LOG) 1070 PETSC_INTERN PetscObject *PetscObjects; 1071 PETSC_INTERN PetscInt PetscObjectsCounts; 1072 PETSC_INTERN PetscInt PetscObjectsMaxCounts; 1073 PETSC_INTERN PetscBool PetscObjectsLog; 1074 #endif 1075 1076 /* 1077 Frees all the MPI types and operations that PETSc may have created 1078 */ 1079 PetscErrorCode PetscFreeMPIResources(void) 1080 { 1081 PetscErrorCode ierr; 1082 1083 PetscFunctionBegin; 1084 #if defined(PETSC_USE_REAL___FLOAT128) 1085 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr); 1086 #if defined(PETSC_HAVE_COMPLEX) 1087 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr); 1088 #endif 1089 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1090 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1091 #elif defined(PETSC_USE_REAL___FP16) 1092 ierr = MPI_Type_free(&MPIU___FP16);CHKERRQ(ierr); 1093 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1094 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1095 #endif 1096 1097 #if defined(PETSC_HAVE_COMPLEX) 1098 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1099 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 1100 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr); 1101 #endif 1102 #endif 1103 1104 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1105 ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr); 1106 #endif 1107 1108 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr); 1109 #if defined(PETSC_USE_64BIT_INDICES) 1110 ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr); 1111 #endif 1112 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRQ(ierr); 1113 PetscFunctionReturn(0); 1114 } 1115 1116 /*@C 1117 PetscFinalize - Checks for options to be called at the conclusion 1118 of the program. MPI_Finalize() is called only if the user had not 1119 called MPI_Init() before calling PetscInitialize(). 1120 1121 Collective on PETSC_COMM_WORLD 1122 1123 Options Database Keys: 1124 + -options_view - Calls PetscOptionsView() 1125 . -options_left - Prints unused options that remain in the database 1126 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1127 . -mpidump - Calls PetscMPIDump() 1128 . -malloc_dump - Calls PetscMallocDump() 1129 . -malloc_info - Prints total memory usage 1130 - -malloc_log - Prints summary of memory usage 1131 1132 Level: beginner 1133 1134 Note: 1135 See PetscInitialize() for more general runtime options. 1136 1137 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1138 @*/ 1139 PetscErrorCode PetscFinalize(void) 1140 { 1141 PetscErrorCode ierr; 1142 PetscMPIInt rank; 1143 PetscInt nopt; 1144 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1145 PetscBool flg; 1146 #if defined(PETSC_USE_LOG) 1147 char mname[PETSC_MAX_PATH_LEN]; 1148 #endif 1149 1150 if (!PetscInitializeCalled) { 1151 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1152 return(PETSC_ERR_ARG_WRONGSTATE); 1153 } 1154 PetscFunctionBegin; 1155 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1156 1157 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 1158 #if defined(PETSC_HAVE_ADIOS) 1159 ierr = adios_read_finalize_method(ADIOS_READ_METHOD_BP_AGGREGATE);CHKERRQ(ierr); 1160 ierr = adios_finalize(rank);CHKERRQ(ierr); 1161 #endif 1162 #if defined(PETSC_HAVE_ADIOS2) 1163 #endif 1164 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1165 if (flg) { 1166 char *cits, filename[PETSC_MAX_PATH_LEN]; 1167 FILE *fd = PETSC_STDOUT; 1168 1169 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 1170 if (filename[0]) { 1171 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1172 } 1173 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1174 cits[0] = 0; 1175 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1176 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1177 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1178 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1179 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1180 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1181 ierr = PetscFree(cits);CHKERRQ(ierr); 1182 } 1183 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1184 1185 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1186 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1187 { 1188 PetscInt nmax = 2; 1189 char **buffs; 1190 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1191 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1192 if (flg1) { 1193 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1194 if (nmax == 1) { 1195 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1196 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1197 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1198 } 1199 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1200 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1201 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1202 } 1203 ierr = PetscFree(buffs);CHKERRQ(ierr); 1204 } 1205 { 1206 PetscInt nmax = 2; 1207 char **buffs; 1208 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1209 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1210 if (flg1) { 1211 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1212 if (nmax == 1) { 1213 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1214 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1215 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1216 } 1217 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1218 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1219 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1220 } 1221 ierr = PetscFree(buffs);CHKERRQ(ierr); 1222 } 1223 #endif 1224 /* 1225 It should be safe to cancel the options monitors, since we don't expect to be setting options 1226 here (at least that are worth monitoring). Monitors ought to be released so that they release 1227 whatever memory was allocated there before -malloc_dump reports unfreed memory. 1228 */ 1229 ierr = PetscOptionsMonitorCancel();CHKERRQ(ierr); 1230 1231 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1232 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1233 #endif 1234 1235 1236 #if defined(PETSC_HAVE_SAWS) 1237 flg = PETSC_FALSE; 1238 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1239 if (flg) { 1240 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1241 } 1242 #endif 1243 1244 #if defined(PETSC_HAVE_X) 1245 flg1 = PETSC_FALSE; 1246 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1247 if (flg1) { 1248 /* this is a crude hack, but better than nothing */ 1249 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1250 } 1251 #endif 1252 1253 #if !defined(PETSC_HAVE_THREADSAFETY) 1254 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1255 if (!flg2) { 1256 flg2 = PETSC_FALSE; 1257 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1258 } 1259 if (flg2) { 1260 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1261 } 1262 #endif 1263 1264 #if defined(PETSC_USE_LOG) 1265 flg1 = PETSC_FALSE; 1266 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1267 if (flg1) { 1268 PetscLogDouble flops = 0; 1269 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr); 1270 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1271 } 1272 #endif 1273 1274 1275 #if defined(PETSC_USE_LOG) 1276 #if defined(PETSC_HAVE_MPE) 1277 mname[0] = 0; 1278 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1279 if (flg1) { 1280 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1281 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1282 } 1283 #endif 1284 #endif 1285 1286 /* 1287 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1288 */ 1289 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1290 1291 #if defined(PETSC_USE_LOG) 1292 ierr = PetscOptionsPushGetViewerOff(PETSC_FALSE);CHKERRQ(ierr); 1293 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1294 ierr = PetscOptionsPopGetViewerOff();CHKERRQ(ierr); 1295 1296 mname[0] = 0; 1297 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1298 if (flg1) { 1299 PetscViewer viewer; 1300 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1301 if (mname[0]) { 1302 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1303 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1304 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1305 } else { 1306 viewer = PETSC_VIEWER_STDOUT_WORLD; 1307 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1308 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1309 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1310 } 1311 } 1312 1313 /* 1314 Free any objects created by the last block of code. 1315 */ 1316 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1317 1318 mname[0] = 0; 1319 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1320 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr); 1321 if (flg1 || flg2) {ierr = PetscLogDump(mname);CHKERRQ(ierr);} 1322 #endif 1323 1324 ierr = PetscStackDestroy();CHKERRQ(ierr); 1325 1326 flg1 = PETSC_FALSE; 1327 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1328 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1329 flg1 = PETSC_FALSE; 1330 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1331 if (flg1) { 1332 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1333 } 1334 flg1 = PETSC_FALSE; 1335 flg2 = PETSC_FALSE; 1336 /* preemptive call to avoid listing this option in options table as unused */ 1337 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1338 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1339 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1340 1341 if (flg2) { 1342 PetscViewer viewer; 1343 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1344 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1345 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1346 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1347 } 1348 1349 /* to prevent PETSc -options_left from warning */ 1350 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1351 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1352 1353 flg3 = PETSC_FALSE; /* default value is required */ 1354 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1355 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1356 if (flg3) { 1357 if (!flg2) { /* have not yet printed the options */ 1358 PetscViewer viewer; 1359 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1360 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1361 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1362 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1363 } 1364 if (!nopt) { 1365 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1366 } else if (nopt == 1) { 1367 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1368 } else { 1369 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1370 } 1371 } 1372 #if defined(PETSC_USE_DEBUG) 1373 if (nopt && !flg3 && !flg1) { 1374 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1375 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1376 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1377 } else if (nopt && flg3) { 1378 #else 1379 if (nopt && flg3) { 1380 #endif 1381 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1382 } 1383 1384 #if defined(PETSC_HAVE_SAWS) 1385 if (!PetscGlobalRank) { 1386 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1387 PetscStackCallSAWs(SAWs_Finalize,()); 1388 } 1389 #endif 1390 1391 #if defined(PETSC_USE_LOG) 1392 /* 1393 List all objects the user may have forgot to free 1394 */ 1395 if (PetscObjectsLog) { 1396 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1397 if (flg1) { 1398 MPI_Comm local_comm; 1399 char string[64]; 1400 1401 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr); 1402 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1403 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1404 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1405 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1406 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1407 } 1408 } 1409 #endif 1410 1411 #if defined(PETSC_USE_LOG) 1412 PetscObjectsCounts = 0; 1413 PetscObjectsMaxCounts = 0; 1414 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1415 #endif 1416 1417 /* 1418 Destroy any packages that registered a finalize 1419 */ 1420 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1421 1422 #if defined(PETSC_USE_LOG) 1423 ierr = PetscLogFinalize();CHKERRQ(ierr); 1424 #endif 1425 1426 /* 1427 Print PetscFunctionLists that have not been properly freed 1428 1429 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1430 */ 1431 1432 if (petsc_history) { 1433 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1434 petsc_history = 0; 1435 } 1436 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1437 1438 ierr = PetscInfoAllow(PETSC_FALSE,NULL);CHKERRQ(ierr); 1439 1440 #if !defined(PETSC_HAVE_THREADSAFETY) 1441 { 1442 char fname[PETSC_MAX_PATH_LEN]; 1443 FILE *fd; 1444 int err; 1445 1446 fname[0] = 0; 1447 1448 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr); 1449 flg2 = PETSC_FALSE; 1450 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr); 1451 #if defined(PETSC_USE_DEBUG) 1452 if (PETSC_RUNNING_ON_VALGRIND) flg2 = PETSC_FALSE; 1453 #else 1454 flg2 = PETSC_FALSE; /* Skip reporting for optimized builds regardless of -malloc_test */ 1455 #endif 1456 if (flg1 && fname[0]) { 1457 char sname[PETSC_MAX_PATH_LEN]; 1458 1459 PetscSNPrintf(sname,PETSC_MAX_PATH_LEN,"%s_%d",fname,rank); 1460 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1461 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1462 err = fclose(fd); 1463 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1464 } else if (flg1 || flg2) { 1465 MPI_Comm local_comm; 1466 1467 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1468 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1469 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1470 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1471 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1472 } 1473 } 1474 1475 { 1476 char fname[PETSC_MAX_PATH_LEN]; 1477 FILE *fd = NULL; 1478 1479 fname[0] = 0; 1480 1481 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_log",fname,250,&flg1);CHKERRQ(ierr); 1482 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_log_threshold",&flg2);CHKERRQ(ierr); 1483 if (flg1 && fname[0]) { 1484 int err; 1485 1486 if (!rank) { 1487 fd = fopen(fname,"w"); 1488 if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",fname); 1489 } 1490 ierr = PetscMallocDumpLog(fd);CHKERRQ(ierr); 1491 if (fd) { 1492 err = fclose(fd); 1493 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1494 } 1495 } else if (flg1 || flg2) { 1496 ierr = PetscMallocDumpLog(stdout);CHKERRQ(ierr); 1497 } 1498 } 1499 #endif 1500 1501 /* 1502 Close any open dynamic libraries 1503 */ 1504 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1505 1506 /* Can be destroyed only after all the options are used */ 1507 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1508 1509 PetscGlobalArgc = 0; 1510 PetscGlobalArgs = 0; 1511 1512 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1513 1514 /* 1515 Destroy any known inner MPI_Comm's and attributes pointing to them 1516 Note this will not destroy any new communicators the user has created. 1517 1518 If all PETSc objects were not destroyed those left over objects will have hanging references to 1519 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1520 */ 1521 { 1522 PetscCommCounter *counter; 1523 PetscMPIInt flg; 1524 MPI_Comm icomm; 1525 union {MPI_Comm comm; void *ptr;} ucomm; 1526 ierr = MPI_Comm_get_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1527 if (flg) { 1528 icomm = ucomm.comm; 1529 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1530 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1531 1532 ierr = MPI_Comm_delete_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1533 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1534 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1535 } 1536 ierr = MPI_Comm_get_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1537 if (flg) { 1538 icomm = ucomm.comm; 1539 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1540 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1541 1542 ierr = MPI_Comm_delete_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1543 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1544 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1545 } 1546 } 1547 1548 ierr = MPI_Comm_free_keyval(&Petsc_Counter_keyval);CHKERRQ(ierr); 1549 ierr = MPI_Comm_free_keyval(&Petsc_InnerComm_keyval);CHKERRQ(ierr); 1550 ierr = MPI_Comm_free_keyval(&Petsc_OuterComm_keyval);CHKERRQ(ierr); 1551 ierr = MPI_Comm_free_keyval(&Petsc_ShmComm_keyval);CHKERRQ(ierr); 1552 1553 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1554 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1555 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1556 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1557 1558 if (PetscBeganMPI) { 1559 #if defined(PETSC_HAVE_MPI_FINALIZED) 1560 PetscMPIInt flag; 1561 ierr = MPI_Finalized(&flag);CHKERRQ(ierr); 1562 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1563 #endif 1564 ierr = MPI_Finalize();CHKERRQ(ierr); 1565 } 1566 /* 1567 1568 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1569 the communicator has some outstanding requests on it. Specifically if the 1570 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1571 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1572 is never freed as it should be. Thus one may obtain messages of the form 1573 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1574 memory was not freed. 1575 1576 */ 1577 ierr = PetscMallocClear();CHKERRQ(ierr); 1578 1579 PetscInitializeCalled = PETSC_FALSE; 1580 PetscFinalizeCalled = PETSC_TRUE; 1581 PetscFunctionReturn(0); 1582 } 1583 1584 #if defined(PETSC_MISSING_LAPACK_lsame_) 1585 PETSC_EXTERN int lsame_(char *a,char *b) 1586 { 1587 if (*a == *b) return 1; 1588 if (*a + 32 == *b) return 1; 1589 if (*a - 32 == *b) return 1; 1590 return 0; 1591 } 1592 #endif 1593 1594 #if defined(PETSC_MISSING_LAPACK_lsame) 1595 PETSC_EXTERN int lsame(char *a,char *b) 1596 { 1597 if (*a == *b) return 1; 1598 if (*a + 32 == *b) return 1; 1599 if (*a - 32 == *b) return 1; 1600 return 0; 1601 } 1602 #endif 1603