1 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 9 #if defined(PETSC_USE_LOG) 10 extern PetscErrorCode PetscLogInitialize(void); 11 #endif 12 13 #if defined(PETSC_SERIALIZE_FUNCTIONS) 14 PetscFPT PetscFPTData = 0; 15 #endif 16 17 #if defined(PETSC_HAVE_CUDA) 18 cublasHandle_t cublasv2handle = NULL; 19 #endif 20 21 #if defined(PETSC_HAVE_SAWS) 22 #include <petscviewersaws.h> 23 #endif 24 /* -----------------------------------------------------------------------------------------*/ 25 26 extern FILE *petsc_history; 27 28 extern PetscErrorCode PetscInitialize_DynamicLibraries(void); 29 extern PetscErrorCode PetscFinalize_DynamicLibraries(void); 30 extern PetscErrorCode PetscFunctionListPrintAll(void); 31 extern PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 32 extern PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 33 extern PetscErrorCode PetscCloseHistoryFile(FILE**); 34 35 /* user may set this BEFORE calling PetscInitialize() */ 36 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 37 38 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 39 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 40 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 41 PetscMPIInt Petsc_Shared_keyval = MPI_KEYVAL_INVALID; 42 43 /* 44 Declare and set all the string names of the PETSc enums 45 */ 46 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",0}; 47 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",0}; 48 const char *const PetscDataTypes[] = {"INT","DOUBLE","COMPLEX","LONG","SHORT","FLOAT", 49 "CHAR","LOGICAL","ENUM","BOOL","LONGDOUBLE","OBJECT","FUNCTION","PetscDataType","PETSC_",0}; 50 51 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 52 PetscBool PetscPreLoadingOn = PETSC_FALSE; 53 54 PetscInt PetscHotRegionDepth; 55 56 #if defined(PETSC_HAVE_THREADSAFETY) 57 PetscSpinlock PetscViewerASCIISpinLockOpen; 58 PetscSpinlock PetscViewerASCIISpinLockStdout; 59 PetscSpinlock PetscViewerASCIISpinLockStderr; 60 PetscSpinlock PetscCommSpinLock; 61 #endif 62 63 /* 64 Checks the options database for initializations related to the 65 PETSc components 66 */ 67 PetscErrorCode PetscOptionsCheckInitial_Components(void) 68 { 69 PetscBool flg1; 70 PetscErrorCode ierr; 71 72 PetscFunctionBegin; 73 ierr = PetscOptionsHasName(NULL,NULL,"-help",&flg1);CHKERRQ(ierr); 74 if (flg1) { 75 #if defined(PETSC_USE_LOG) 76 MPI_Comm comm = PETSC_COMM_WORLD; 77 ierr = (*PetscHelpPrintf)(comm,"------Additional PETSc component options--------\n");CHKERRQ(ierr); 78 ierr = (*PetscHelpPrintf)(comm," -log_exclude: <vec,mat,pc.ksp,snes>\n");CHKERRQ(ierr); 79 ierr = (*PetscHelpPrintf)(comm," -info_exclude: <null,vec,mat,pc,ksp,snes,ts>\n");CHKERRQ(ierr); 80 ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr); 81 #endif 82 } 83 PetscFunctionReturn(0); 84 } 85 86 /* 87 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 88 89 Collective 90 91 Level: advanced 92 93 Notes: this is called only by the PETSc MATLAB and Julia interface. Even though it might start MPI it sets the flag to 94 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 95 be called multiple times from MATLAB and Julia without the problem of trying to initialize MPI more than once. 96 97 Turns off PETSc signal handling because that can interact with MATLAB's signal handling causing random crashes. 98 99 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 100 */ 101 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 102 { 103 PetscErrorCode ierr; 104 int myargc = argc; 105 char **myargs = args; 106 107 PetscFunctionBegin; 108 ierr = PetscInitialize(&myargc,&myargs,filename,help);CHKERRQ(ierr); 109 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 110 PetscBeganMPI = PETSC_FALSE; 111 PetscFunctionReturn(ierr); 112 } 113 114 /* 115 Used by MATLAB and Julia interface to get communicator 116 */ 117 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 118 { 119 PetscFunctionBegin; 120 *comm = PETSC_COMM_SELF; 121 PetscFunctionReturn(0); 122 } 123 124 /*@C 125 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 126 the command line arguments. 127 128 Collective 129 130 Level: advanced 131 132 .seealso: PetscInitialize(), PetscInitializeFortran() 133 @*/ 134 PetscErrorCode PetscInitializeNoArguments(void) 135 { 136 PetscErrorCode ierr; 137 int argc = 0; 138 char **args = 0; 139 140 PetscFunctionBegin; 141 ierr = PetscInitialize(&argc,&args,NULL,NULL); 142 PetscFunctionReturn(ierr); 143 } 144 145 /*@ 146 PetscInitialized - Determine whether PETSc is initialized. 147 148 Level: beginner 149 150 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 151 @*/ 152 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 153 { 154 *isInitialized = PetscInitializeCalled; 155 return 0; 156 } 157 158 /*@ 159 PetscFinalized - Determine whether PetscFinalize() has been called yet 160 161 Level: developer 162 163 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 164 @*/ 165 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 166 { 167 *isFinalized = PetscFinalizeCalled; 168 return 0; 169 } 170 171 extern PetscErrorCode PetscOptionsCheckInitial_Private(void); 172 173 /* 174 This function is the MPI reduction operation used to compute the sum of the 175 first half of the datatype and the max of the second half. 176 */ 177 MPI_Op MPIU_MAXSUM_OP = 0; 178 179 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 180 { 181 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 182 183 PetscFunctionBegin; 184 if (*datatype != MPIU_2INT) { 185 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 186 MPI_Abort(MPI_COMM_WORLD,1); 187 } 188 189 for (i=0; i<count; i++) { 190 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 191 xout[2*i+1] += xin[2*i+1]; 192 } 193 PetscFunctionReturnVoid(); 194 } 195 196 /* 197 Returns the max of the first entry owned by this processor and the 198 sum of the second entry. 199 200 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 201 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 202 there would be no place to store the both needed results. 203 */ 204 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 205 { 206 PetscErrorCode ierr; 207 208 PetscFunctionBegin; 209 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 210 { 211 struct {PetscInt max,sum;} work; 212 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 213 *max = work.max; 214 *sum = work.sum; 215 } 216 #else 217 { 218 PetscMPIInt size,rank; 219 struct {PetscInt max,sum;} *work; 220 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 221 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 222 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 223 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 224 *max = work[rank].max; 225 *sum = work[rank].sum; 226 ierr = PetscFree(work);CHKERRQ(ierr); 227 } 228 #endif 229 PetscFunctionReturn(0); 230 } 231 232 /* ----------------------------------------------------------------------------*/ 233 234 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 235 MPI_Op MPIU_SUM = 0; 236 237 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 238 { 239 PetscInt i,count = *cnt; 240 241 PetscFunctionBegin; 242 if (*datatype == MPIU_REAL) { 243 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 244 for (i=0; i<count; i++) xout[i] += xin[i]; 245 } 246 #if defined(PETSC_HAVE_COMPLEX) 247 else if (*datatype == MPIU_COMPLEX) { 248 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 249 for (i=0; i<count; i++) xout[i] += xin[i]; 250 } 251 #endif 252 else { 253 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 254 MPI_Abort(MPI_COMM_WORLD,1); 255 } 256 PetscFunctionReturnVoid(); 257 } 258 #endif 259 260 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 261 MPI_Op MPIU_MAX = 0; 262 MPI_Op MPIU_MIN = 0; 263 264 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 265 { 266 PetscInt i,count = *cnt; 267 268 PetscFunctionBegin; 269 if (*datatype == MPIU_REAL) { 270 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 271 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 272 } 273 #if defined(PETSC_HAVE_COMPLEX) 274 else if (*datatype == MPIU_COMPLEX) { 275 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 276 for (i=0; i<count; i++) { 277 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 278 } 279 } 280 #endif 281 else { 282 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 283 MPI_Abort(MPI_COMM_WORLD,1); 284 } 285 PetscFunctionReturnVoid(); 286 } 287 288 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 289 { 290 PetscInt i,count = *cnt; 291 292 PetscFunctionBegin; 293 if (*datatype == MPIU_REAL) { 294 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 295 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 296 } 297 #if defined(PETSC_HAVE_COMPLEX) 298 else if (*datatype == MPIU_COMPLEX) { 299 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 300 for (i=0; i<count; i++) { 301 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 302 } 303 } 304 #endif 305 else { 306 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 307 MPI_Abort(MPI_COMM_WORLD,1); 308 } 309 PetscFunctionReturnVoid(); 310 } 311 #endif 312 313 /* 314 Private routine to delete internal tag/name counter storage when a communicator is freed. 315 316 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 317 318 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 319 320 */ 321 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelCounter(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 322 { 323 PetscErrorCode ierr; 324 325 PetscFunctionBegin; 326 ierr = PetscInfo1(0,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 327 ierr = PetscFree(count_val);CHKERRMPI(ierr); 328 PetscFunctionReturn(MPI_SUCCESS); 329 } 330 331 /* 332 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Attr_delete) or when the user 333 calls MPI_Comm_free(). 334 335 This is the only entry point for breaking the links between inner and outer comms. 336 337 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 338 339 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 340 341 */ 342 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Outer(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 343 { 344 PetscErrorCode ierr; 345 PetscMPIInt flg; 346 union {MPI_Comm comm; void *ptr;} icomm,ocomm; 347 348 PetscFunctionBegin; 349 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 350 icomm.ptr = attr_val; 351 352 ierr = MPI_Attr_get(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 353 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected reference to outer comm"); 354 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm has reference to non-matching outer comm"); 355 ierr = MPI_Attr_delete(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 356 ierr = PetscInfo1(0,"User MPI_Comm %ld is being freed after removing reference from inner PETSc comm to this outer comm\n",(long)comm);CHKERRMPI(ierr); 357 PetscFunctionReturn(MPI_SUCCESS); 358 } 359 360 /* 361 * This is invoked on the inner comm when Petsc_DelComm_Outer calls MPI_Attr_delete. It should not be reached any other way. 362 */ 363 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Inner(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 364 { 365 PetscErrorCode ierr; 366 367 PetscFunctionBegin; 368 ierr = PetscInfo1(0,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 369 PetscFunctionReturn(MPI_SUCCESS); 370 } 371 372 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelShared(MPI_Comm,PetscMPIInt,void *,void *); 373 374 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 375 #if !defined(PETSC_WORDS_BIGENDIAN) 376 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 377 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 378 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 379 #endif 380 #endif 381 382 PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 383 384 int PetscGlobalArgc = 0; 385 char **PetscGlobalArgs = 0; 386 PetscSegBuffer PetscCitationsList; 387 388 PetscErrorCode PetscCitationsInitialize(void) 389 { 390 PetscErrorCode ierr; 391 392 PetscFunctionBegin; 393 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 394 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown and Peter Brune\n and Kris Buschelman and Lisandro Dalcin and Victor Eijkhout and William D. Gropp\n and Dinesh Kaushik and Matthew G. Knepley\n and Lois Curfman McInnes and Karl Rupp and Barry F. Smith\n and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.8},\n Institution = {Argonne National Laboratory},\n Year = {2017}\n}\n",NULL);CHKERRQ(ierr); 395 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 396 PetscFunctionReturn(0); 397 } 398 399 /*@C 400 PetscGetArgs - Allows you to access the raw command line arguments anywhere 401 after PetscInitialize() is called but before PetscFinalize(). 402 403 Not Collective 404 405 Output Parameters: 406 + argc - count of number of command line arguments 407 - args - the command line arguments 408 409 Level: intermediate 410 411 Notes: 412 This is usually used to pass the command line arguments into other libraries 413 that are called internally deep in PETSc or the application. 414 415 The first argument contains the program name as is normal for C arguments. 416 417 Concepts: command line arguments 418 419 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 420 421 @*/ 422 PetscErrorCode PetscGetArgs(int *argc,char ***args) 423 { 424 PetscFunctionBegin; 425 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 426 *argc = PetscGlobalArgc; 427 *args = PetscGlobalArgs; 428 PetscFunctionReturn(0); 429 } 430 431 /*@C 432 PetscGetArguments - Allows you to access the command line arguments anywhere 433 after PetscInitialize() is called but before PetscFinalize(). 434 435 Not Collective 436 437 Output Parameters: 438 . args - the command line arguments 439 440 Level: intermediate 441 442 Notes: 443 This does NOT start with the program name and IS null terminated (final arg is void) 444 445 Concepts: command line arguments 446 447 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 448 449 @*/ 450 PetscErrorCode PetscGetArguments(char ***args) 451 { 452 PetscInt i,argc = PetscGlobalArgc; 453 PetscErrorCode ierr; 454 455 PetscFunctionBegin; 456 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 457 if (!argc) {*args = 0; PetscFunctionReturn(0);} 458 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 459 for (i=0; i<argc-1; i++) { 460 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 461 } 462 (*args)[argc-1] = 0; 463 PetscFunctionReturn(0); 464 } 465 466 /*@C 467 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 468 469 Not Collective 470 471 Output Parameters: 472 . args - the command line arguments 473 474 Level: intermediate 475 476 Concepts: command line arguments 477 478 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 479 480 @*/ 481 PetscErrorCode PetscFreeArguments(char **args) 482 { 483 PetscInt i = 0; 484 PetscErrorCode ierr; 485 486 PetscFunctionBegin; 487 if (!args) PetscFunctionReturn(0); 488 while (args[i]) { 489 ierr = PetscFree(args[i]);CHKERRQ(ierr); 490 i++; 491 } 492 ierr = PetscFree(args);CHKERRQ(ierr); 493 PetscFunctionReturn(0); 494 } 495 496 #if defined(PETSC_HAVE_SAWS) 497 #include <petscconfiginfo.h> 498 499 PetscErrorCode PetscInitializeSAWs(const char help[]) 500 { 501 if (!PetscGlobalRank) { 502 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 503 int port; 504 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 505 size_t applinelen,introlen; 506 PetscErrorCode ierr; 507 char sawsurl[256]; 508 509 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 510 if (flg) { 511 char sawslog[PETSC_MAX_PATH_LEN]; 512 513 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 514 if (sawslog[0]) { 515 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 516 } else { 517 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 518 } 519 } 520 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 521 if (flg) { 522 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 523 } 524 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 525 if (selectport) { 526 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 527 PetscStackCallSAWs(SAWs_Set_Port,(port)); 528 } else { 529 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 530 if (flg) { 531 PetscStackCallSAWs(SAWs_Set_Port,(port)); 532 } 533 } 534 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 535 if (flg) { 536 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 537 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 538 } else { 539 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 540 if (flg) { 541 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 542 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 543 } 544 } 545 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 546 if (flg2) { 547 char jsdir[PETSC_MAX_PATH_LEN]; 548 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 549 ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr); 550 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 551 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 552 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 553 } 554 ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr); 555 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 556 introlen = 4096 + applinelen; 557 applinelen += 1024; 558 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 559 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 560 561 if (rootlocal) { 562 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 563 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 564 } 565 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 566 if (rootlocal && help) { 567 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help); 568 } else if (help) { 569 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help); 570 } else { 571 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options); 572 } 573 ierr = PetscFree(options);CHKERRQ(ierr); 574 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 575 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 576 "<center><h2> <a href=\"http://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 577 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 578 "%s",version,petscconfigureoptions,appline); 579 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 580 ierr = PetscFree(intro);CHKERRQ(ierr); 581 ierr = PetscFree(appline);CHKERRQ(ierr); 582 if (selectport) { 583 PetscBool silent; 584 585 ierr = SAWs_Initialize(); 586 /* another process may have grabbed the port so keep trying */ 587 while (ierr) { 588 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 589 PetscStackCallSAWs(SAWs_Set_Port,(port)); 590 ierr = SAWs_Initialize(); 591 } 592 593 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 594 if (!silent) { 595 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 596 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 597 } 598 } else { 599 PetscStackCallSAWs(SAWs_Initialize,()); 600 } 601 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 602 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 603 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 604 " Institution = {Argonne National Laboratory},\n" 605 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 606 } 607 PetscFunctionReturn(0); 608 } 609 #endif 610 611 /*@C 612 PetscInitialize - Initializes the PETSc database and MPI. 613 PetscInitialize() calls MPI_Init() if that has yet to be called, 614 so this routine should always be called near the beginning of 615 your program -- usually the very first line! 616 617 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 618 619 Input Parameters: 620 + argc - count of number of command line arguments 621 . args - the command line arguments 622 . file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for 623 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 624 - help - [optional] Help message to print, use NULL for no message 625 626 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 627 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 628 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 629 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 630 if different subcommunicators of the job are doing different things with PETSc. 631 632 Options Database Keys: 633 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 634 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 635 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 636 . -on_error_emacs <machinename> causes emacsclient to jump to error file 637 . -on_error_abort calls abort() when error detected (no traceback) 638 . -on_error_mpiabort calls MPI_abort() when error detected 639 . -error_output_stderr prints error messages to stderr instead of the default stdout 640 . -error_output_none does not print the error messages (but handles errors in the same way as if this was not called) 641 . -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger 642 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 643 . -stop_for_debugger - Print message on how to attach debugger manually to 644 process and wait (-debugger_pause) seconds for attachment 645 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) 646 . -malloc no - Indicates not to use error-checking malloc 647 . -malloc_debug - check for memory corruption at EVERY malloc or free 648 . -malloc_dump - prints a list of all unfreed memory at the end of the run 649 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds 650 . -fp_trap - Stops on floating point exceptions (Note that on the 651 IBM RS6000 this slows code by at least a factor of 10.) 652 . -no_signal_handler - Indicates not to trap error signals 653 . -shared_tmp - indicates /tmp directory is shared by all processors 654 . -not_shared_tmp - each processor has own /tmp 655 . -tmp - alternative name of /tmp directory 656 . -get_total_flops - returns total flops done by all processors 657 - -memory_view - Print memory usage at end of run 658 659 Options Database Keys for Profiling: 660 See Users-Manual: ch_profiling for details. 661 + -info <optional filename> - Prints verbose information to the screen 662 . -info_exclude <null,vec,mat,pc,ksp,snes,ts> - Excludes some of the verbose messages 663 . -log_sync - Log the synchronization in scatters, inner products and norms 664 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 665 hangs without running in the debugger). See PetscLogTraceBegin(). 666 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 667 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 668 summary is written to the file. See PetscLogView(). 669 . -log_exclude: <vec,mat,pc.ksp,snes> - excludes subset of object classes from logging 670 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 671 . -log [filename] - Logs basic profiline information See PetscLogDump(). 672 - -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 673 674 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 675 676 Options Database Keys for SAWs: 677 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 678 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 679 this is useful when you are running many jobs that utilize SAWs at the same time 680 . -saws_log <filename> - save a log of all SAWs communication 681 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 682 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 683 684 Environmental Variables: 685 + PETSC_TMP - alternative tmp directory 686 . PETSC_SHARED_TMP - tmp is shared by all processes 687 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 688 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 689 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 690 691 692 Level: beginner 693 694 Notes: 695 If for some reason you must call MPI_Init() separately, call 696 it before PetscInitialize(). 697 698 Fortran Version: 699 In Fortran this routine has the format 700 $ call PetscInitialize(file,ierr) 701 702 + ierr - error return code 703 - file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use PETSC_NULL_CHARACTER to not check for 704 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 705 706 Important Fortran Note: 707 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 708 null character string; you CANNOT just use NULL as 709 in the C version. See Users-Manual: ch_fortran for details. 710 711 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 712 calling PetscInitialize(). 713 714 Concepts: initializing PETSc 715 716 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 717 718 @*/ 719 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 720 { 721 PetscErrorCode ierr; 722 PetscMPIInt flag, size; 723 PetscBool flg = PETSC_TRUE; 724 char hostname[256]; 725 #if defined(PETSC_HAVE_CUDA) 726 cublasStatus_t cberr; 727 #endif 728 #if defined(PETSC_HAVE_HWLOC) 729 PetscViewer viewer; 730 #endif 731 732 PetscFunctionBegin; 733 if (PetscInitializeCalled) PetscFunctionReturn(0); 734 /* 735 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 736 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 737 MPICH v3.1 (Released Feburary 2014) 738 IBM MPI v2.1 (December 2014) 739 Intel® MPI Library v5.0 (2014) 740 Cray MPT v7.0.0 (June 2014) 741 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 742 listed above and since that time are compatible. 743 744 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 745 at compile time or runtime. Thus we will need to systematically track the allowed versions 746 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 747 to perform the checking. 748 749 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 750 751 Questions: 752 753 Should the checks for ABI incompatibility be only on the major version number below? 754 Presumably the output to stderr will be removed before a release. 755 */ 756 757 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 758 { 759 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 760 PetscMPIInt mpilibraryversionlength; 761 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 762 /* check for MPICH versions before MPI ABI initiative */ 763 #if defined(MPICH_VERSION) 764 #if MPICH_NUMVERSION < 30100000 765 { 766 char *ver,*lf; 767 flg = PETSC_FALSE; 768 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 769 if (ver) { 770 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 771 if (lf) { 772 *lf = 0; 773 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 774 } 775 } 776 if (!flg) { 777 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 778 return PETSC_ERR_MPI_LIB_INCOMP; 779 } 780 } 781 #endif 782 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 783 #elif defined(OMPI_MAJOR_VERSION) 784 { 785 char *ver,bs[32],*bsf; 786 flg = PETSC_FALSE; 787 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 788 if (ver) { 789 sprintf(bs,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 790 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 791 if (bsf) flg = PETSC_TRUE; 792 } 793 if (!flg) { 794 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 795 return PETSC_ERR_MPI_LIB_INCOMP; 796 } 797 } 798 #endif 799 } 800 #endif 801 802 803 /* these must be initialized in a routine, not as a constant declaration*/ 804 PETSC_STDOUT = stdout; 805 PETSC_STDERR = stderr; 806 807 /* on Windows - set printf to default to printing 2 digit exponents */ 808 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 809 _set_output_format(_TWO_DIGIT_EXPONENT); 810 #endif 811 812 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 813 814 /* 815 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 816 it that it sets args[0] on all processors to be args[0] on the first processor. 817 */ 818 if (argc && *argc) { 819 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 820 } else { 821 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 822 } 823 824 ierr = MPI_Initialized(&flag);CHKERRQ(ierr); 825 if (!flag) { 826 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 827 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 828 { 829 PetscMPIInt provided; 830 ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr); 831 } 832 #else 833 ierr = MPI_Init(argc,args);CHKERRQ(ierr); 834 #endif 835 PetscBeganMPI = PETSC_TRUE; 836 } 837 if (argc && args) { 838 PetscGlobalArgc = *argc; 839 PetscGlobalArgs = *args; 840 } 841 PetscFinalizeCalled = PETSC_FALSE; 842 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 843 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 844 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 845 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 846 847 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 848 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr); 849 850 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRQ(ierr); 851 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRQ(ierr); 852 853 /* Done after init due to a bug in MPICH-GM? */ 854 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 855 856 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr); 857 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr); 858 859 MPIU_BOOL = MPI_INT; 860 MPIU_ENUM = MPI_INT; 861 862 /* 863 Initialized the global complex variable; this is because with 864 shared libraries the constructors for global variables 865 are not called; at least on IRIX. 866 */ 867 #if defined(PETSC_HAVE_COMPLEX) 868 { 869 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 870 PetscComplex ic(0.0,1.0); 871 PETSC_i = ic; 872 #else 873 PETSC_i = _Complex_I; 874 #endif 875 } 876 877 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 878 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 879 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 880 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr); 881 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr); 882 #endif 883 #endif /* PETSC_HAVE_COMPLEX */ 884 885 /* 886 Create the PETSc MPI reduction operator that sums of the first 887 half of the entries and maxes the second half. 888 */ 889 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRQ(ierr); 890 891 #if defined(PETSC_USE_REAL___FLOAT128) 892 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr); 893 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr); 894 #if defined(PETSC_HAVE_COMPLEX) 895 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr); 896 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr); 897 #endif 898 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 899 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 900 #elif defined(PETSC_USE_REAL___FP16) 901 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRQ(ierr); 902 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRQ(ierr); 903 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 904 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 905 #endif 906 907 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 908 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr); 909 #endif 910 911 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr); 912 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr); 913 914 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT) 915 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr); 916 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr); 917 #endif 918 919 920 /* 921 Attributes to be set on PETSc communicators 922 */ 923 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelCounter,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr); 924 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Outer,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr); 925 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Inner,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr); 926 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelShared,&Petsc_Shared_keyval,(void*)0);CHKERRQ(ierr); 927 928 /* 929 Build the options database 930 */ 931 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 932 933 934 /* 935 Print main application help message 936 */ 937 ierr = PetscOptionsHasName(NULL,NULL,"-help",&flg);CHKERRQ(ierr); 938 if (help && flg) { 939 ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr); 940 } 941 ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr); 942 943 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 944 945 #if defined(PETSC_HAVE_SAWS) 946 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 947 #endif 948 949 /* Creates the logging data structures; this is enabled even if logging is not turned on */ 950 #if defined(PETSC_USE_LOG) 951 ierr = PetscLogInitialize();CHKERRQ(ierr); 952 #endif 953 954 /* 955 Load the dynamic libraries (on machines that support them), this registers all 956 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 957 */ 958 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 959 960 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 961 ierr = PetscInfo1(0,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 962 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 963 ierr = PetscInfo1(0,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 964 965 ierr = PetscOptionsCheckInitial_Components();CHKERRQ(ierr); 966 /* Check the options database for options related to the options database itself */ 967 ierr = PetscOptionsSetFromOptions(NULL);CHKERRQ(ierr); 968 969 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 970 /* 971 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 972 973 Currently not used because it is not supported by MPICH. 974 */ 975 #if !defined(PETSC_WORDS_BIGENDIAN) 976 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr); 977 #endif 978 #endif 979 980 #if defined(PETSC_HAVE_CUDA) 981 flg = PETSC_TRUE; 982 ierr = PetscOptionsGetBool(NULL,NULL,"-cublas",&flg,NULL);CHKERRQ(ierr); 983 if (flg) { 984 PetscMPIInt p; 985 for (p = 0; p < PetscGlobalSize; ++p) { 986 if (p == PetscGlobalRank) { 987 cberr = cublasCreate(&cublasv2handle);CHKERRCUBLAS(cberr); 988 } 989 ierr = MPI_Barrier(PETSC_COMM_WORLD);CHKERRQ(ierr); 990 } 991 } 992 #endif 993 994 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 995 if (flg) { 996 PetscInitializeCalled = PETSC_TRUE; 997 ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr); 998 } 999 1000 /* 1001 Setup building of stack frames for all function calls 1002 */ 1003 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 1004 ierr = PetscStackCreate();CHKERRQ(ierr); 1005 #endif 1006 1007 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1008 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 1009 #endif 1010 1011 #if defined(PETSC_HAVE_HWLOC) 1012 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 1013 if (flg) { 1014 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1015 } 1016 #endif 1017 1018 /* 1019 Once we are completedly initialized then we can set this variables 1020 */ 1021 PetscInitializeCalled = PETSC_TRUE; 1022 PetscFunctionReturn(0); 1023 } 1024 1025 #if defined(PETSC_USE_LOG) 1026 extern PetscObject *PetscObjects; 1027 extern PetscInt PetscObjectsCounts, PetscObjectsMaxCounts; 1028 extern PetscBool PetscObjectsLog; 1029 #endif 1030 1031 /* 1032 Frees all the MPI types and operations that PETSc may have created 1033 */ 1034 PetscErrorCode PetscFreeMPIResources(void) 1035 { 1036 PetscErrorCode ierr; 1037 1038 PetscFunctionBegin; 1039 #if defined(PETSC_USE_REAL___FLOAT128) 1040 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr); 1041 #if defined(PETSC_HAVE_COMPLEX) 1042 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr); 1043 #endif 1044 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1045 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1046 #elif defined(PETSC_USE_REAL___FP16) 1047 ierr = MPI_Type_free(&MPIU___FP16);CHKERRQ(ierr); 1048 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1049 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1050 #endif 1051 1052 #if defined(PETSC_HAVE_COMPLEX) 1053 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1054 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 1055 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr); 1056 #endif 1057 #endif 1058 1059 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1060 ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr); 1061 #endif 1062 1063 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr); 1064 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT) 1065 ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr); 1066 #endif 1067 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRQ(ierr); 1068 PetscFunctionReturn(0); 1069 } 1070 1071 /*@C 1072 PetscFinalize - Checks for options to be called at the conclusion 1073 of the program. MPI_Finalize() is called only if the user had not 1074 called MPI_Init() before calling PetscInitialize(). 1075 1076 Collective on PETSC_COMM_WORLD 1077 1078 Options Database Keys: 1079 + -options_table - Calls PetscOptionsView() 1080 . -options_left - Prints unused options that remain in the database 1081 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1082 . -mpidump - Calls PetscMPIDump() 1083 . -malloc_dump - Calls PetscMallocDump() 1084 . -malloc_info - Prints total memory usage 1085 - -malloc_log - Prints summary of memory usage 1086 1087 Level: beginner 1088 1089 Note: 1090 See PetscInitialize() for more general runtime options. 1091 1092 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1093 @*/ 1094 PetscErrorCode PetscFinalize(void) 1095 { 1096 PetscErrorCode ierr; 1097 PetscMPIInt rank; 1098 PetscInt nopt; 1099 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1100 PetscBool flg; 1101 #if defined(PETSC_USE_LOG) 1102 char mname[PETSC_MAX_PATH_LEN]; 1103 #endif 1104 #if defined(PETSC_HAVE_CUDA) 1105 cublasStatus_t cberr; 1106 #endif 1107 1108 if (!PetscInitializeCalled) { 1109 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1110 return(PETSC_ERR_ARG_WRONGSTATE); 1111 } 1112 PetscFunctionBegin; 1113 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1114 1115 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 1116 1117 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1118 if (flg) { 1119 char *cits, filename[PETSC_MAX_PATH_LEN]; 1120 FILE *fd = PETSC_STDOUT; 1121 1122 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 1123 if (filename[0]) { 1124 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1125 } 1126 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1127 cits[0] = 0; 1128 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1129 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1130 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1131 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1132 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1133 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1134 ierr = PetscFree(cits);CHKERRQ(ierr); 1135 } 1136 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1137 1138 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1139 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1140 { 1141 PetscInt nmax = 2; 1142 char **buffs; 1143 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1144 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1145 if (flg1) { 1146 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1147 if (nmax == 1) { 1148 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1149 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1150 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1151 } 1152 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1153 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1154 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1155 } 1156 ierr = PetscFree(buffs);CHKERRQ(ierr); 1157 } 1158 { 1159 PetscInt nmax = 2; 1160 char **buffs; 1161 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1162 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1163 if (flg1) { 1164 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1165 if (nmax == 1) { 1166 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1167 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1168 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1169 } 1170 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1171 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1172 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1173 } 1174 ierr = PetscFree(buffs);CHKERRQ(ierr); 1175 } 1176 #endif 1177 /* 1178 It should be safe to cancel the options monitors, since we don't expect to be setting options 1179 here (at least that are worth monitoring). Monitors ought to be released so that they release 1180 whatever memory was allocated there before -malloc_dump reports unfreed memory. 1181 */ 1182 ierr = PetscOptionsMonitorCancel();CHKERRQ(ierr); 1183 1184 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1185 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1186 #endif 1187 1188 1189 #if defined(PETSC_HAVE_SAWS) 1190 flg = PETSC_FALSE; 1191 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1192 if (flg) { 1193 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1194 } 1195 #endif 1196 1197 #if defined(PETSC_HAVE_X) 1198 flg1 = PETSC_FALSE; 1199 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1200 if (flg1) { 1201 /* this is a crude hack, but better than nothing */ 1202 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1203 } 1204 #endif 1205 1206 #if !defined(PETSC_HAVE_THREADSAFETY) 1207 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1208 if (!flg2) { 1209 flg2 = PETSC_FALSE; 1210 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1211 } 1212 if (flg2) { 1213 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1214 } 1215 #endif 1216 1217 #if defined(PETSC_USE_LOG) 1218 flg1 = PETSC_FALSE; 1219 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1220 if (flg1) { 1221 PetscLogDouble flops = 0; 1222 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr); 1223 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1224 } 1225 #endif 1226 1227 1228 #if defined(PETSC_USE_LOG) 1229 #if defined(PETSC_HAVE_MPE) 1230 mname[0] = 0; 1231 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1232 if (flg1) { 1233 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1234 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1235 } 1236 #endif 1237 #endif 1238 1239 /* 1240 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1241 */ 1242 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1243 1244 #if defined(PETSC_USE_LOG) 1245 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1246 mname[0] = 0; 1247 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1248 if (flg1) { 1249 PetscViewer viewer; 1250 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1251 if (mname[0]) { 1252 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1253 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1254 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1255 } else { 1256 viewer = PETSC_VIEWER_STDOUT_WORLD; 1257 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1258 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1259 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1260 } 1261 } 1262 1263 /* 1264 Free any objects created by the last block of code. 1265 */ 1266 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1267 1268 mname[0] = 0; 1269 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1270 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr); 1271 if (flg1 || flg2) { 1272 if (mname[0]) PetscLogDump(mname); 1273 else PetscLogDump(0); 1274 } 1275 #endif 1276 1277 ierr = PetscStackDestroy();CHKERRQ(ierr); 1278 1279 flg1 = PETSC_FALSE; 1280 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1281 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1282 flg1 = PETSC_FALSE; 1283 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1284 if (flg1) { 1285 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1286 } 1287 flg1 = PETSC_FALSE; 1288 flg2 = PETSC_FALSE; 1289 /* preemptive call to avoid listing this option in options table as unused */ 1290 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1291 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1292 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1293 1294 if (flg2) { 1295 PetscViewer viewer; 1296 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1297 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1298 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1299 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1300 } 1301 1302 /* to prevent PETSc -options_left from warning */ 1303 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1304 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1305 1306 flg3 = PETSC_FALSE; /* default value is required */ 1307 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1308 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1309 if (flg3) { 1310 if (!flg2) { /* have not yet printed the options */ 1311 PetscViewer viewer; 1312 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1313 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1314 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1315 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1316 } 1317 if (!nopt) { 1318 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1319 } else if (nopt == 1) { 1320 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1321 } else { 1322 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1323 } 1324 } 1325 #if defined(PETSC_USE_DEBUG) 1326 if (nopt && !flg3 && !flg1) { 1327 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1328 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1329 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1330 } else if (nopt && flg3) { 1331 #else 1332 if (nopt && flg3) { 1333 #endif 1334 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1335 } 1336 1337 #if defined(PETSC_HAVE_SAWS) 1338 if (!PetscGlobalRank) { 1339 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1340 PetscStackCallSAWs(SAWs_Finalize,()); 1341 } 1342 #endif 1343 1344 #if defined(PETSC_USE_LOG) 1345 /* 1346 List all objects the user may have forgot to free 1347 */ 1348 if (PetscObjectsLog) { 1349 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1350 if (flg1) { 1351 MPI_Comm local_comm; 1352 char string[64]; 1353 1354 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr); 1355 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1356 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1357 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1358 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1359 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1360 } 1361 } 1362 #endif 1363 1364 #if defined(PETSC_USE_LOG) 1365 PetscObjectsCounts = 0; 1366 PetscObjectsMaxCounts = 0; 1367 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1368 #endif 1369 1370 /* 1371 Destroy any packages that registered a finalize 1372 */ 1373 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1374 1375 #if defined(PETSC_USE_LOG) 1376 ierr = PetscLogDestroy();CHKERRQ(ierr); 1377 #endif 1378 1379 /* 1380 Print PetscFunctionLists that have not been properly freed 1381 1382 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1383 */ 1384 1385 if (petsc_history) { 1386 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1387 petsc_history = 0; 1388 } 1389 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1390 1391 ierr = PetscInfoAllow(PETSC_FALSE,NULL);CHKERRQ(ierr); 1392 1393 #if !defined(PETSC_HAVE_THREADSAFETY) 1394 { 1395 char fname[PETSC_MAX_PATH_LEN]; 1396 FILE *fd; 1397 int err; 1398 1399 fname[0] = 0; 1400 1401 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr); 1402 flg2 = PETSC_FALSE; 1403 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr); 1404 #if defined(PETSC_USE_DEBUG) 1405 if (PETSC_RUNNING_ON_VALGRIND) flg2 = PETSC_FALSE; 1406 #else 1407 flg2 = PETSC_FALSE; /* Skip reporting for optimized builds regardless of -malloc_test */ 1408 #endif 1409 if (flg1 && fname[0]) { 1410 char sname[PETSC_MAX_PATH_LEN]; 1411 1412 sprintf(sname,"%s_%d",fname,rank); 1413 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1414 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1415 err = fclose(fd); 1416 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1417 } else if (flg1 || flg2) { 1418 MPI_Comm local_comm; 1419 1420 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1421 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1422 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1423 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1424 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1425 } 1426 } 1427 1428 { 1429 char fname[PETSC_MAX_PATH_LEN]; 1430 FILE *fd = NULL; 1431 1432 fname[0] = 0; 1433 1434 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_log",fname,250,&flg1);CHKERRQ(ierr); 1435 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_log_threshold",&flg2);CHKERRQ(ierr); 1436 if (flg1 && fname[0]) { 1437 int err; 1438 1439 if (!rank) { 1440 fd = fopen(fname,"w"); 1441 if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",fname); 1442 } 1443 ierr = PetscMallocDumpLog(fd);CHKERRQ(ierr); 1444 if (fd) { 1445 err = fclose(fd); 1446 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1447 } 1448 } else if (flg1 || flg2) { 1449 ierr = PetscMallocDumpLog(stdout);CHKERRQ(ierr); 1450 } 1451 } 1452 #endif 1453 1454 /* 1455 Close any open dynamic libraries 1456 */ 1457 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1458 1459 #if defined(PETSC_HAVE_CUDA) 1460 flg = PETSC_TRUE; 1461 ierr = PetscOptionsGetBool(NULL,NULL,"-cublas",&flg,NULL);CHKERRQ(ierr); 1462 if (flg) { 1463 PetscInt p; 1464 for (p = 0; p < PetscGlobalSize; ++p) { 1465 if (p == PetscGlobalRank) { 1466 if (cublasv2handle) { 1467 cberr = cublasDestroy(cublasv2handle);CHKERRCUBLAS(cberr); 1468 } 1469 } 1470 ierr = MPI_Barrier(PETSC_COMM_WORLD);CHKERRQ(ierr); 1471 } 1472 } 1473 #endif 1474 1475 /* Can be destroyed only after all the options are used */ 1476 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1477 1478 PetscGlobalArgc = 0; 1479 PetscGlobalArgs = 0; 1480 1481 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1482 1483 /* 1484 Destroy any known inner MPI_Comm's and attributes pointing to them 1485 Note this will not destroy any new communicators the user has created. 1486 1487 If all PETSc objects were not destroyed those left over objects will have hanging references to 1488 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1489 */ 1490 { 1491 PetscCommCounter *counter; 1492 PetscMPIInt flg; 1493 MPI_Comm icomm; 1494 union {MPI_Comm comm; void *ptr;} ucomm; 1495 ierr = MPI_Attr_get(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1496 if (flg) { 1497 icomm = ucomm.comm; 1498 ierr = MPI_Attr_get(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1499 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1500 1501 ierr = MPI_Attr_delete(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1502 ierr = MPI_Attr_delete(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1503 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1504 } 1505 ierr = MPI_Attr_get(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1506 if (flg) { 1507 icomm = ucomm.comm; 1508 ierr = MPI_Attr_get(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1509 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1510 1511 ierr = MPI_Attr_delete(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1512 ierr = MPI_Attr_delete(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1513 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1514 } 1515 } 1516 1517 ierr = MPI_Keyval_free(&Petsc_Counter_keyval);CHKERRQ(ierr); 1518 ierr = MPI_Keyval_free(&Petsc_InnerComm_keyval);CHKERRQ(ierr); 1519 ierr = MPI_Keyval_free(&Petsc_OuterComm_keyval);CHKERRQ(ierr); 1520 ierr = MPI_Keyval_free(&Petsc_Shared_keyval);CHKERRQ(ierr); 1521 1522 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1523 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1524 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1525 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1526 1527 if (PetscBeganMPI) { 1528 #if defined(PETSC_HAVE_MPI_FINALIZED) 1529 PetscMPIInt flag; 1530 ierr = MPI_Finalized(&flag);CHKERRQ(ierr); 1531 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1532 #endif 1533 ierr = MPI_Finalize();CHKERRQ(ierr); 1534 } 1535 /* 1536 1537 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1538 the communicator has some outstanding requests on it. Specifically if the 1539 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1540 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1541 is never freed as it should be. Thus one may obtain messages of the form 1542 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1543 memory was not freed. 1544 1545 */ 1546 ierr = PetscMallocClear();CHKERRQ(ierr); 1547 1548 PetscInitializeCalled = PETSC_FALSE; 1549 PetscFinalizeCalled = PETSC_TRUE; 1550 PetscFunctionReturn(0); 1551 } 1552 1553 #if defined(PETSC_MISSING_LAPACK_lsame_) 1554 PETSC_EXTERN int lsame_(char *a,char *b) 1555 { 1556 if (*a == *b) return 1; 1557 if (*a + 32 == *b) return 1; 1558 if (*a - 32 == *b) return 1; 1559 return 0; 1560 } 1561 #endif 1562 1563 #if defined(PETSC_MISSING_LAPACK_lsame) 1564 PETSC_EXTERN int lsame(char *a,char *b) 1565 { 1566 if (*a == *b) return 1; 1567 if (*a + 32 == *b) return 1; 1568 if (*a - 32 == *b) return 1; 1569 return 0; 1570 } 1571 #endif 1572