1 #define PETSC_DESIRE_FEATURE_TEST_MACROS 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 #if defined(PETSC_USE_GCOV) 9 EXTERN_C_BEGIN 10 void __gcov_flush(void); 11 EXTERN_C_END 12 #endif 13 14 #if defined(PETSC_USE_LOG) 15 PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 16 #endif 17 18 #if defined(PETSC_SERIALIZE_FUNCTIONS) 19 PETSC_INTERN PetscFPT PetscFPTData; 20 PetscFPT PetscFPTData = 0; 21 #endif 22 23 #if defined(PETSC_HAVE_SAWS) 24 #include <petscviewersaws.h> 25 #endif 26 27 /* -----------------------------------------------------------------------------------------*/ 28 29 PETSC_INTERN FILE *petsc_history; 30 31 PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 32 PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 33 PETSC_INTERN PetscErrorCode PetscFunctionListPrintAll(void); 34 PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 35 PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 36 PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE**); 37 38 /* user may set these BEFORE calling PetscInitialize() */ 39 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 40 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 41 PetscMPIInt PETSC_MPI_THREAD_REQUIRED = MPI_THREAD_FUNNELED; 42 #else 43 PetscMPIInt PETSC_MPI_THREAD_REQUIRED = 0; 44 #endif 45 46 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 47 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 48 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 49 PetscMPIInt Petsc_ShmComm_keyval = MPI_KEYVAL_INVALID; 50 51 /* 52 Declare and set all the string names of the PETSc enums 53 */ 54 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",NULL}; 55 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",NULL}; 56 57 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 58 PetscBool PetscPreLoadingOn = PETSC_FALSE; 59 60 PetscInt PetscHotRegionDepth; 61 62 #if defined(PETSC_HAVE_THREADSAFETY) 63 PetscSpinlock PetscViewerASCIISpinLockOpen; 64 PetscSpinlock PetscViewerASCIISpinLockStdout; 65 PetscSpinlock PetscViewerASCIISpinLockStderr; 66 PetscSpinlock PetscCommSpinLock; 67 #endif 68 69 /* 70 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 71 72 Collective 73 74 Level: advanced 75 76 Notes: 77 this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to 78 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 79 be called multiple times from Julia without the problem of trying to initialize MPI more than once. 80 81 Developer Note: Turns off PETSc signal handling to allow Julia to manage signals 82 83 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 84 */ 85 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 86 { 87 PetscErrorCode ierr; 88 int myargc = argc; 89 char **myargs = args; 90 91 PetscFunctionBegin; 92 ierr = PetscInitialize(&myargc,&myargs,filename,help);if (ierr) return ierr; 93 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 94 PetscBeganMPI = PETSC_FALSE; 95 PetscFunctionReturn(ierr); 96 } 97 98 /* 99 Used by Julia interface to get communicator 100 */ 101 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 102 { 103 PetscFunctionBegin; 104 *comm = PETSC_COMM_SELF; 105 PetscFunctionReturn(0); 106 } 107 108 /*@C 109 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 110 the command line arguments. 111 112 Collective 113 114 Level: advanced 115 116 .seealso: PetscInitialize(), PetscInitializeFortran() 117 @*/ 118 PetscErrorCode PetscInitializeNoArguments(void) 119 { 120 PetscErrorCode ierr; 121 int argc = 0; 122 char **args = NULL; 123 124 PetscFunctionBegin; 125 ierr = PetscInitialize(&argc,&args,NULL,NULL); 126 PetscFunctionReturn(ierr); 127 } 128 129 /*@ 130 PetscInitialized - Determine whether PETSc is initialized. 131 132 Level: beginner 133 134 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 135 @*/ 136 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 137 { 138 *isInitialized = PetscInitializeCalled; 139 return 0; 140 } 141 142 /*@ 143 PetscFinalized - Determine whether PetscFinalize() has been called yet 144 145 Level: developer 146 147 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 148 @*/ 149 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 150 { 151 *isFinalized = PetscFinalizeCalled; 152 return 0; 153 } 154 155 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(const char []); 156 157 /* 158 This function is the MPI reduction operation used to compute the sum of the 159 first half of the datatype and the max of the second half. 160 */ 161 MPI_Op MPIU_MAXSUM_OP = 0; 162 163 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 164 { 165 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 166 167 PetscFunctionBegin; 168 if (*datatype != MPIU_2INT) { 169 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 170 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 171 } 172 173 for (i=0; i<count; i++) { 174 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 175 xout[2*i+1] += xin[2*i+1]; 176 } 177 PetscFunctionReturnVoid(); 178 } 179 180 /* 181 Returns the max of the first entry owned by this processor and the 182 sum of the second entry. 183 184 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 185 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 186 there would be no place to store the both needed results. 187 */ 188 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 189 { 190 PetscErrorCode ierr; 191 192 PetscFunctionBegin; 193 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 194 { 195 struct {PetscInt max,sum;} work; 196 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRMPI(ierr); 197 *max = work.max; 198 *sum = work.sum; 199 } 200 #else 201 { 202 PetscMPIInt size,rank; 203 struct {PetscInt max,sum;} *work; 204 ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 205 ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 206 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 207 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 208 *max = work[rank].max; 209 *sum = work[rank].sum; 210 ierr = PetscFree(work);CHKERRQ(ierr); 211 } 212 #endif 213 PetscFunctionReturn(0); 214 } 215 216 /* ----------------------------------------------------------------------------*/ 217 218 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 219 MPI_Op MPIU_SUM = 0; 220 221 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 222 { 223 PetscInt i,count = *cnt; 224 225 PetscFunctionBegin; 226 if (*datatype == MPIU_REAL) { 227 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 228 for (i=0; i<count; i++) xout[i] += xin[i]; 229 } 230 #if defined(PETSC_HAVE_COMPLEX) 231 else if (*datatype == MPIU_COMPLEX) { 232 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 233 for (i=0; i<count; i++) xout[i] += xin[i]; 234 } 235 #endif 236 else { 237 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 238 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 239 } 240 PetscFunctionReturnVoid(); 241 } 242 #endif 243 244 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 245 MPI_Op MPIU_MAX = 0; 246 MPI_Op MPIU_MIN = 0; 247 248 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 249 { 250 PetscInt i,count = *cnt; 251 252 PetscFunctionBegin; 253 if (*datatype == MPIU_REAL) { 254 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 255 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 256 } 257 #if defined(PETSC_HAVE_COMPLEX) 258 else if (*datatype == MPIU_COMPLEX) { 259 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 260 for (i=0; i<count; i++) { 261 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 262 } 263 } 264 #endif 265 else { 266 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 267 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 268 } 269 PetscFunctionReturnVoid(); 270 } 271 272 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 273 { 274 PetscInt i,count = *cnt; 275 276 PetscFunctionBegin; 277 if (*datatype == MPIU_REAL) { 278 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 279 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 280 } 281 #if defined(PETSC_HAVE_COMPLEX) 282 else if (*datatype == MPIU_COMPLEX) { 283 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 284 for (i=0; i<count; i++) { 285 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 286 } 287 } 288 #endif 289 else { 290 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 291 PETSCABORT(MPI_COMM_SELF,PETSC_ERR_ARG_WRONG); 292 } 293 PetscFunctionReturnVoid(); 294 } 295 #endif 296 297 /* 298 Private routine to delete internal tag/name counter storage when a communicator is freed. 299 300 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 301 302 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 303 304 */ 305 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_Counter_Attr_Delete_Fn(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 306 { 307 PetscErrorCode ierr; 308 PetscCommCounter *counter=(PetscCommCounter*)count_val; 309 310 PetscFunctionBegin; 311 ierr = PetscInfo1(NULL,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 312 ierr = PetscFree(counter->iflags);CHKERRMPI(ierr); 313 ierr = PetscFree(counter);CHKERRMPI(ierr); 314 PetscFunctionReturn(MPI_SUCCESS); 315 } 316 317 /* 318 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 319 calls MPI_Comm_free(). 320 321 This is the only entry point for breaking the links between inner and outer comms. 322 323 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 324 325 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 326 327 */ 328 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_InnerComm_Attr_Delete_Fn(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 329 { 330 PetscErrorCode ierr; 331 union {MPI_Comm comm; void *ptr;} icomm; 332 333 PetscFunctionBegin; 334 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 335 icomm.ptr = attr_val; 336 if (PetscDefined(USE_DEBUG)) { 337 /* Error out if the inner/outer comms are not correctly linked through their Outer/InnterComm attributes */ 338 PetscMPIInt flg; 339 union {MPI_Comm comm; void *ptr;} ocomm; 340 ierr = MPI_Comm_get_attr(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 341 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner comm does not have OuterComm attribute"); 342 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner comm's OuterComm attribute does not point to outer PETSc comm"); 343 } 344 ierr = MPI_Comm_delete_attr(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 345 ierr = PetscInfo2(NULL,"User MPI_Comm %ld is being unlinked from inner PETSc comm %ld\n",(long)comm,(long)icomm.comm);CHKERRMPI(ierr); 346 PetscFunctionReturn(MPI_SUCCESS); 347 } 348 349 /* 350 * This is invoked on the inner comm when Petsc_InnerComm_Attr_Delete_Fn calls MPI_Comm_delete_attr(). It should not be reached any other way. 351 */ 352 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_OuterComm_Attr_Delete_Fn(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 353 { 354 PetscErrorCode ierr; 355 356 PetscFunctionBegin; 357 ierr = PetscInfo1(NULL,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 358 PetscFunctionReturn(MPI_SUCCESS); 359 } 360 361 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_ShmComm_Attr_Delete_Fn(MPI_Comm,PetscMPIInt,void *,void *); 362 363 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 364 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 365 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 366 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 367 #endif 368 369 PetscMPIInt PETSC_MPI_ERROR_CLASS=MPI_ERR_LASTCODE,PETSC_MPI_ERROR_CODE; 370 371 PETSC_INTERN int PetscGlobalArgc; 372 PETSC_INTERN char **PetscGlobalArgs; 373 int PetscGlobalArgc = 0; 374 char **PetscGlobalArgs = NULL; 375 PetscSegBuffer PetscCitationsList; 376 377 PetscErrorCode PetscCitationsInitialize(void) 378 { 379 PetscErrorCode ierr; 380 381 PetscFunctionBegin; 382 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 383 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown \n and Peter Brune and Kris Buschelman and Lisandro Dalcin and\n Victor Eijkhout and William D. Gropp and Dmitry Karpeyev and\n Dinesh Kaushik and Matthew G. Knepley and Dave A. May and Lois Curfman McInnes\n and Richard Tran Mills and Todd Munson and Karl Rupp and Patrick Sanan\n and Barry F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.11},\n Institution = {Argonne National Laboratory},\n Year = {2019}\n}\n",NULL);CHKERRQ(ierr); 384 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 385 PetscFunctionReturn(0); 386 } 387 388 static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */ 389 390 PetscErrorCode PetscSetProgramName(const char name[]) 391 { 392 PetscErrorCode ierr; 393 394 PetscFunctionBegin; 395 ierr = PetscStrncpy(programname,name,sizeof(programname));CHKERRQ(ierr); 396 PetscFunctionReturn(0); 397 } 398 399 /*@C 400 PetscGetProgramName - Gets the name of the running program. 401 402 Not Collective 403 404 Input Parameter: 405 . len - length of the string name 406 407 Output Parameter: 408 . name - the name of the running program 409 410 Level: advanced 411 412 Notes: 413 The name of the program is copied into the user-provided character 414 array of length len. On some machines the program name includes 415 its entire path, so one should generally set len >= PETSC_MAX_PATH_LEN. 416 @*/ 417 PetscErrorCode PetscGetProgramName(char name[],size_t len) 418 { 419 PetscErrorCode ierr; 420 421 PetscFunctionBegin; 422 ierr = PetscStrncpy(name,programname,len);CHKERRQ(ierr); 423 PetscFunctionReturn(0); 424 } 425 426 /*@C 427 PetscGetArgs - Allows you to access the raw command line arguments anywhere 428 after PetscInitialize() is called but before PetscFinalize(). 429 430 Not Collective 431 432 Output Parameters: 433 + argc - count of number of command line arguments 434 - args - the command line arguments 435 436 Level: intermediate 437 438 Notes: 439 This is usually used to pass the command line arguments into other libraries 440 that are called internally deep in PETSc or the application. 441 442 The first argument contains the program name as is normal for C arguments. 443 444 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 445 446 @*/ 447 PetscErrorCode PetscGetArgs(int *argc,char ***args) 448 { 449 PetscFunctionBegin; 450 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 451 *argc = PetscGlobalArgc; 452 *args = PetscGlobalArgs; 453 PetscFunctionReturn(0); 454 } 455 456 /*@C 457 PetscGetArguments - Allows you to access the command line arguments anywhere 458 after PetscInitialize() is called but before PetscFinalize(). 459 460 Not Collective 461 462 Output Parameters: 463 . args - the command line arguments 464 465 Level: intermediate 466 467 Notes: 468 This does NOT start with the program name and IS null terminated (final arg is void) 469 470 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 471 472 @*/ 473 PetscErrorCode PetscGetArguments(char ***args) 474 { 475 PetscInt i,argc = PetscGlobalArgc; 476 PetscErrorCode ierr; 477 478 PetscFunctionBegin; 479 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 480 if (!argc) {*args = NULL; PetscFunctionReturn(0);} 481 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 482 for (i=0; i<argc-1; i++) { 483 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 484 } 485 (*args)[argc-1] = NULL; 486 PetscFunctionReturn(0); 487 } 488 489 /*@C 490 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 491 492 Not Collective 493 494 Output Parameters: 495 . args - the command line arguments 496 497 Level: intermediate 498 499 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 500 501 @*/ 502 PetscErrorCode PetscFreeArguments(char **args) 503 { 504 PetscInt i = 0; 505 PetscErrorCode ierr; 506 507 PetscFunctionBegin; 508 if (!args) PetscFunctionReturn(0); 509 while (args[i]) { 510 ierr = PetscFree(args[i]);CHKERRQ(ierr); 511 i++; 512 } 513 ierr = PetscFree(args);CHKERRQ(ierr); 514 PetscFunctionReturn(0); 515 } 516 517 #if defined(PETSC_HAVE_SAWS) 518 #include <petscconfiginfo.h> 519 520 PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 521 { 522 if (!PetscGlobalRank) { 523 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 524 int port; 525 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 526 size_t applinelen,introlen; 527 PetscErrorCode ierr; 528 char sawsurl[256]; 529 530 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 531 if (flg) { 532 char sawslog[PETSC_MAX_PATH_LEN]; 533 534 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,sizeof(sawslog),NULL);CHKERRQ(ierr); 535 if (sawslog[0]) { 536 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 537 } else { 538 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 539 } 540 } 541 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,sizeof(cert),&flg);CHKERRQ(ierr); 542 if (flg) { 543 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 544 } 545 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 546 if (selectport) { 547 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 548 PetscStackCallSAWs(SAWs_Set_Port,(port)); 549 } else { 550 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 551 if (flg) { 552 PetscStackCallSAWs(SAWs_Set_Port,(port)); 553 } 554 } 555 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,sizeof(root),&flg);CHKERRQ(ierr); 556 if (flg) { 557 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 558 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 559 } else { 560 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 561 if (flg) { 562 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,sizeof(root));CHKERRQ(ierr); 563 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 564 } 565 } 566 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 567 if (flg2) { 568 char jsdir[PETSC_MAX_PATH_LEN]; 569 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 570 ierr = PetscSNPrintf(jsdir,sizeof(jsdir),"%s/js",root);CHKERRQ(ierr); 571 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 572 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 573 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 574 } 575 ierr = PetscGetProgramName(programname,sizeof(programname));CHKERRQ(ierr); 576 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 577 introlen = 4096 + applinelen; 578 applinelen += 1024; 579 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 580 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 581 582 if (rootlocal) { 583 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 584 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 585 } 586 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 587 if (rootlocal && help) { 588 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help);CHKERRQ(ierr); 589 } else if (help) { 590 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help);CHKERRQ(ierr); 591 } else { 592 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options);CHKERRQ(ierr); 593 } 594 ierr = PetscFree(options);CHKERRQ(ierr); 595 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 596 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 597 "<center><h2> <a href=\"https://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 598 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 599 "%s",version,petscconfigureoptions,appline);CHKERRQ(ierr); 600 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 601 ierr = PetscFree(intro);CHKERRQ(ierr); 602 ierr = PetscFree(appline);CHKERRQ(ierr); 603 if (selectport) { 604 PetscBool silent; 605 606 ierr = SAWs_Initialize(); 607 /* another process may have grabbed the port so keep trying */ 608 while (ierr) { 609 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 610 PetscStackCallSAWs(SAWs_Set_Port,(port)); 611 ierr = SAWs_Initialize(); 612 } 613 614 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 615 if (!silent) { 616 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 617 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 618 } 619 } else { 620 PetscStackCallSAWs(SAWs_Initialize,()); 621 } 622 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 623 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 624 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 625 " Institution = {Argonne National Laboratory},\n" 626 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 627 } 628 PetscFunctionReturn(0); 629 } 630 #endif 631 632 /* Things must be done before MPI_Init() when MPI is not yet initialized, and can be shared between C init and Fortran init */ 633 PETSC_INTERN PetscErrorCode PetscPreMPIInit_Private(void) 634 { 635 PetscFunctionBegin; 636 #if defined(PETSC_HAVE_HWLOC_SOLARIS_BUG) 637 /* see MPI.py for details on this bug */ 638 (void) setenv("HWLOC_COMPONENTS","-x86",1); 639 #endif 640 PetscFunctionReturn(0); 641 } 642 643 #if defined(PETSC_HAVE_ADIOS) 644 #include <adios.h> 645 #include <adios_read.h> 646 int64_t Petsc_adios_group; 647 #endif 648 #if defined(PETSC_HAVE_ADIOS2) 649 #include <adios2_c.h> 650 #endif 651 #if defined(PETSC_HAVE_OPENMP) 652 #include <omp.h> 653 PetscInt PetscNumOMPThreads; 654 #endif 655 656 #if defined(PETSC_HAVE_DLFCN_H) 657 #include <dlfcn.h> 658 #endif 659 660 /*@C 661 PetscInitialize - Initializes the PETSc database and MPI. 662 PetscInitialize() calls MPI_Init() if that has yet to be called, 663 so this routine should always be called near the beginning of 664 your program -- usually the very first line! 665 666 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 667 668 Input Parameters: 669 + argc - count of number of command line arguments 670 . args - the command line arguments 671 . file - [optional] PETSc database file, append ":yaml" to filename to specify YAML options format. 672 Use NULL or empty string to not check for code specific file. 673 Also checks ~/.petscrc, .petscrc and petscrc. 674 Use -skip_petscrc in the code specific file (or command line) to skip ~/.petscrc, .petscrc and petscrc files. 675 - help - [optional] Help message to print, use NULL for no message 676 677 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 678 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 679 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 680 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 681 if different subcommunicators of the job are doing different things with PETSc. 682 683 Options Database Keys: 684 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 685 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 686 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 687 . -on_error_emacs <machinename> - causes emacsclient to jump to error file 688 . -on_error_abort - calls abort() when error detected (no traceback) 689 . -on_error_mpiabort - calls MPI_abort() when error detected 690 . -error_output_stderr - prints error messages to stderr instead of the default stdout 691 . -error_output_none - does not print the error messages (but handles errors in the same way as if this was not called) 692 . -debugger_ranks [rank1,rank2,...] - Indicates ranks to start in debugger 693 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 694 . -stop_for_debugger - Print message on how to attach debugger manually to 695 process and wait (-debugger_pause) seconds for attachment 696 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) (deprecated, use -malloc_debug) 697 . -malloc no - Indicates not to use error-checking malloc (deprecated, use -malloc_debug no) 698 . -malloc_debug - check for memory corruption at EVERY malloc or free, see PetscMallocSetDebug() 699 . -malloc_dump - prints a list of all unfreed memory at the end of the run 700 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds, ignored in optimized build. May want to set in PETSC_OPTIONS environmental variable 701 . -malloc_view - show a list of all allocated memory during PetscFinalize() 702 . -malloc_view_threshold <t> - only list memory allocations of size greater than t with -malloc_view 703 . -malloc_requested_size - malloc logging will record the requested size rather than size after alignment 704 . -fp_trap - Stops on floating point exceptions 705 . -no_signal_handler - Indicates not to trap error signals 706 . -shared_tmp - indicates /tmp directory is shared by all processors 707 . -not_shared_tmp - each processor has own /tmp 708 . -tmp - alternative name of /tmp directory 709 . -get_total_flops - returns total flops done by all processors 710 - -memory_view - Print memory usage at end of run 711 712 Options Database Keys for Option Database: 713 + -skip_petscrc - skip the default option files ~/.petscrc, .petscrc, petscrc 714 . -options_monitor - monitor all set options to standard output for the whole program run 715 - -options_monitor_cancel - cancel options monitoring hard-wired using PetscOptionsMonitorSet() 716 717 Options -options_monitor_{all,cancel} are 718 position-independent and apply to all options set since the PETSc start. 719 They can be used also in option files. 720 721 See PetscOptionsMonitorSet() to do monitoring programmatically. 722 723 Options Database Keys for Profiling: 724 See Users-Manual: ch_profiling for details. 725 + -info [filename][:[~]<list,of,classnames>[:[~]self]] - Prints verbose information. See PetscInfo(). 726 . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 727 however it slows things down and gives a distorted view of the overall runtime. 728 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 729 hangs without running in the debugger). See PetscLogTraceBegin(). 730 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 731 . -log_view_memory - Includes in the summary from -log_view the memory used in each method, see PetscLogView(). 732 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 733 summary is written to the file. See PetscLogView(). 734 . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 735 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 736 . -log [filename] - Logs basic profiline information See PetscLogDump(). 737 . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 738 . -viewfromoptions on,off - Enable or disable XXXSetFromOptions() calls, for applications with many small solves turn this off 739 - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 740 741 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 742 743 Options Database Keys for SAWs: 744 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 745 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 746 this is useful when you are running many jobs that utilize SAWs at the same time 747 . -saws_log <filename> - save a log of all SAWs communication 748 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 749 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 750 751 Environmental Variables: 752 + PETSC_TMP - alternative tmp directory 753 . PETSC_SHARED_TMP - tmp is shared by all processes 754 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 755 . PETSC_OPTIONS - a string containing additional options for petsc in the form of command line "-key value" pairs 756 . PETSC_OPTIONS_YAML - (requires configuring PETSc to use libyaml) a string containing additional options for petsc in the form of a YAML document 757 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 758 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 759 760 761 Level: beginner 762 763 Notes: 764 If for some reason you must call MPI_Init() separately, call 765 it before PetscInitialize(). 766 767 Fortran Version: 768 In Fortran this routine has the format 769 $ call PetscInitialize(file,ierr) 770 771 + ierr - error return code 772 - file - [optional] PETSc database file, also checks ~/.petscrc, .petscrc and petscrc. 773 Use PETSC_NULL_CHARACTER to not check for code specific file. 774 Use -skip_petscrc in the code specific file (or command line) to skip ~/.petscrc, .petscrc and petscrc files. 775 776 Important Fortran Note: 777 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 778 null character string; you CANNOT just use NULL as 779 in the C version. See Users-Manual: ch_fortran for details. 780 781 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 782 calling PetscInitialize(). 783 784 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 785 786 @*/ 787 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 788 { 789 PetscErrorCode ierr; 790 PetscMPIInt flag, size; 791 PetscBool flg = PETSC_TRUE; 792 char hostname[256]; 793 794 PetscFunctionBegin; 795 if (PetscInitializeCalled) PetscFunctionReturn(0); 796 /* 797 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 798 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 799 MPICH v3.1 (Released Feburary 2014) 800 IBM MPI v2.1 (December 2014) 801 Intel MPI Library v5.0 (2014) 802 Cray MPT v7.0.0 (June 2014) 803 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 804 listed above and since that time are compatible. 805 806 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 807 at compile time or runtime. Thus we will need to systematically track the allowed versions 808 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 809 to perform the checking. 810 811 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 812 813 Questions: 814 815 Should the checks for ABI incompatibility be only on the major version number below? 816 Presumably the output to stderr will be removed before a release. 817 */ 818 819 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 820 { 821 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 822 PetscMPIInt mpilibraryversionlength; 823 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 824 /* check for MPICH versions before MPI ABI initiative */ 825 #if defined(MPICH_VERSION) 826 #if MPICH_NUMVERSION < 30100000 827 { 828 char *ver,*lf; 829 flg = PETSC_FALSE; 830 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 831 if (ver) { 832 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 833 if (lf) { 834 *lf = 0; 835 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 836 } 837 } 838 if (!flg) { 839 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 840 return PETSC_ERR_MPI_LIB_INCOMP; 841 } 842 } 843 #endif 844 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 845 #elif defined(OMPI_MAJOR_VERSION) 846 { 847 char *ver,bs[32],*bsf; 848 flg = PETSC_FALSE; 849 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 850 if (ver) { 851 PetscSNPrintf(bs,32,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 852 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 853 if (bsf) flg = PETSC_TRUE; 854 } 855 if (!flg) { 856 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 857 return PETSC_ERR_MPI_LIB_INCOMP; 858 } 859 } 860 #endif 861 } 862 #endif 863 864 #if defined(PETSC_HAVE_DLSYM) 865 { 866 PetscInt cnt = 0; 867 /* These symbols are currently in the OpenMPI and MPICH libraries; they may not always be, in that case the test will simply not detect the problem */ 868 if (dlsym(RTLD_DEFAULT,"ompi_mpi_init")) cnt++; 869 if (dlsym(RTLD_DEFAULT,"MPL_exit")) cnt++; 870 if (cnt > 1) { 871 fprintf(stderr,"PETSc Error --- Application was linked against both OpenMPI and MPICH based MPI libraries and will not run correctly\n"); 872 return PETSC_ERR_MPI_LIB_INCOMP; 873 } 874 } 875 #endif 876 877 /* these must be initialized in a routine, not as a constant declaration*/ 878 PETSC_STDOUT = stdout; 879 PETSC_STDERR = stderr; 880 881 /*CHKERRQ can be used from now */ 882 PetscErrorHandlingInitialized = PETSC_TRUE; 883 884 /* on Windows - set printf to default to printing 2 digit exponents */ 885 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 886 _set_output_format(_TWO_DIGIT_EXPONENT); 887 #endif 888 889 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 890 891 /* 892 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 893 it that it sets args[0] on all processors to be args[0] on the first processor. 894 */ 895 if (argc && *argc) { 896 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 897 } else { 898 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 899 } 900 901 ierr = MPI_Initialized(&flag);CHKERRMPI(ierr); 902 if (!flag) { 903 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 904 ierr = PetscPreMPIInit_Private();CHKERRQ(ierr); 905 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 906 { 907 PetscMPIInt provided; 908 ierr = MPI_Init_thread(argc,args,PETSC_MPI_THREAD_REQUIRED,&provided);CHKERRMPI(ierr); 909 } 910 #else 911 ierr = MPI_Init(argc,args);CHKERRMPI(ierr); 912 #endif 913 PetscBeganMPI = PETSC_TRUE; 914 } 915 916 if (argc && args) { 917 PetscGlobalArgc = *argc; 918 PetscGlobalArgs = *args; 919 } 920 PetscFinalizeCalled = PETSC_FALSE; 921 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 922 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 923 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 924 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 925 926 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 927 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRMPI(ierr); 928 929 if (PETSC_MPI_ERROR_CLASS == MPI_ERR_LASTCODE) { 930 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRMPI(ierr); 931 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRMPI(ierr); 932 } 933 934 /* Done after init due to a bug in MPICH-GM? */ 935 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 936 937 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRMPI(ierr); 938 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRMPI(ierr); 939 940 MPIU_BOOL = MPI_INT; 941 MPIU_ENUM = MPI_INT; 942 MPIU_FORTRANADDR = (sizeof(void*) == sizeof(int)) ? MPI_INT : MPIU_INT64; 943 if (sizeof(size_t) == sizeof(unsigned)) MPIU_SIZE_T = MPI_UNSIGNED; 944 else if (sizeof(size_t) == sizeof(unsigned long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG; 945 #if defined(PETSC_SIZEOF_LONG_LONG) 946 else if (sizeof(size_t) == sizeof(unsigned long long)) MPIU_SIZE_T = MPI_UNSIGNED_LONG_LONG; 947 #endif 948 else {(*PetscErrorPrintf)("PetscInitialize: Could not find MPI type for size_t\n"); return PETSC_ERR_SUP_SYS;} 949 950 /* 951 Initialized the global complex variable; this is because with 952 shared libraries the constructors for global variables 953 are not called; at least on IRIX. 954 */ 955 #if defined(PETSC_HAVE_COMPLEX) 956 { 957 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 958 PetscComplex ic(0.0,1.0); 959 PETSC_i = ic; 960 #else 961 PETSC_i = _Complex_I; 962 #endif 963 } 964 965 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 966 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRMPI(ierr); 967 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRMPI(ierr); 968 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRMPI(ierr); 969 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRMPI(ierr); 970 #endif 971 #endif /* PETSC_HAVE_COMPLEX */ 972 973 /* 974 Create the PETSc MPI reduction operator that sums of the first 975 half of the entries and maxes the second half. 976 */ 977 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRMPI(ierr); 978 979 #if defined(PETSC_USE_REAL___FLOAT128) 980 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRMPI(ierr); 981 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRMPI(ierr); 982 #if defined(PETSC_HAVE_COMPLEX) 983 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRMPI(ierr); 984 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRMPI(ierr); 985 #endif 986 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRMPI(ierr); 987 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRMPI(ierr); 988 #elif defined(PETSC_USE_REAL___FP16) 989 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRMPI(ierr); 990 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRMPI(ierr); 991 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRMPI(ierr); 992 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRMPI(ierr); 993 #endif 994 995 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 996 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRMPI(ierr); 997 #endif 998 999 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRMPI(ierr); 1000 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRMPI(ierr); 1001 1002 #if defined(PETSC_USE_64BIT_INDICES) 1003 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRMPI(ierr); 1004 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRMPI(ierr); 1005 #endif 1006 1007 /* 1008 Attributes to be set on PETSc communicators 1009 */ 1010 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_Counter_Attr_Delete_Fn,&Petsc_Counter_keyval,(void*)0);CHKERRMPI(ierr); 1011 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_InnerComm_Attr_Delete_Fn,&Petsc_InnerComm_keyval,(void*)0);CHKERRMPI(ierr); 1012 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_OuterComm_Attr_Delete_Fn,&Petsc_OuterComm_keyval,(void*)0);CHKERRMPI(ierr); 1013 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_ShmComm_Attr_Delete_Fn,&Petsc_ShmComm_keyval,(void*)0);CHKERRMPI(ierr); 1014 1015 /* 1016 Build the options database 1017 */ 1018 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 1019 1020 /* call a second time so it can look in the options database */ 1021 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 1022 1023 /* 1024 Check system options and print help 1025 */ 1026 ierr = PetscOptionsCheckInitial_Private(help);CHKERRQ(ierr); 1027 1028 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 1029 1030 #if defined(PETSC_HAVE_SAWS) 1031 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 1032 #endif 1033 1034 /* 1035 Load the dynamic libraries (on machines that support them), this registers all 1036 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 1037 */ 1038 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 1039 1040 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRMPI(ierr); 1041 ierr = PetscInfo1(NULL,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 1042 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 1043 ierr = PetscInfo1(NULL,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 1044 #if defined(PETSC_HAVE_OPENMP) 1045 { 1046 PetscBool omp_view_flag; 1047 char *threads = getenv("OMP_NUM_THREADS"); 1048 1049 if (threads) { 1050 ierr = PetscInfo1(NULL,"Number of OpenMP threads %s (given by OMP_NUM_THREADS)\n",threads);CHKERRQ(ierr); 1051 (void) sscanf(threads, "%" PetscInt_FMT,&PetscNumOMPThreads); 1052 } else { 1053 #define NMAX 10000 1054 int i; 1055 PetscScalar *x; 1056 ierr = PetscMalloc1(NMAX,&x);CHKERRQ(ierr); 1057 #pragma omp parallel for 1058 for (i=0; i<NMAX; i++) { 1059 x[i] = 0.0; 1060 PetscNumOMPThreads = (PetscInt) omp_get_num_threads(); 1061 } 1062 ierr = PetscFree(x);CHKERRQ(ierr); 1063 ierr = PetscInfo1(NULL,"Number of OpenMP threads %D (number not set with OMP_NUM_THREADS, chosen by system)\n",PetscNumOMPThreads);CHKERRQ(ierr); 1064 } 1065 ierr = PetscOptionsBegin(PETSC_COMM_WORLD,NULL,"OpenMP options","Sys");CHKERRQ(ierr); 1066 ierr = PetscOptionsInt("-omp_num_threads","Number of OpenMP threads to use (can also use environmental variable OMP_NUM_THREADS","None",PetscNumOMPThreads,&PetscNumOMPThreads,&flg);CHKERRQ(ierr); 1067 ierr = PetscOptionsName("-omp_view","Display OpenMP number of threads",NULL,&omp_view_flag);CHKERRQ(ierr); 1068 ierr = PetscOptionsEnd();CHKERRQ(ierr); 1069 if (flg) { 1070 ierr = PetscInfo1(NULL,"Number of OpenMP theads %D (given by -omp_num_threads)\n",PetscNumOMPThreads);CHKERRQ(ierr); 1071 omp_set_num_threads((int)PetscNumOMPThreads); 1072 } 1073 if (omp_view_flag) { 1074 ierr = PetscPrintf(PETSC_COMM_WORLD,"OpenMP: number of threads %D\n",PetscNumOMPThreads);CHKERRQ(ierr); 1075 } 1076 } 1077 #endif 1078 1079 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 1080 /* 1081 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 1082 1083 Currently not used because it is not supported by MPICH. 1084 */ 1085 if (!PetscBinaryBigEndian()) { 1086 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRMPI(ierr); 1087 } 1088 #endif 1089 1090 /* 1091 Setup building of stack frames for all function calls 1092 */ 1093 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 1094 ierr = PetscStackCreate();CHKERRQ(ierr); 1095 #endif 1096 1097 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1098 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 1099 #endif 1100 1101 #if defined(PETSC_HAVE_HWLOC) 1102 { 1103 PetscViewer viewer; 1104 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 1105 if (flg) { 1106 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1107 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1108 } 1109 } 1110 #endif 1111 1112 flg = PETSC_TRUE; 1113 ierr = PetscOptionsGetBool(NULL,NULL,"-viewfromoptions",&flg,NULL);CHKERRQ(ierr); 1114 if (!flg) {ierr = PetscOptionsPushGetViewerOff(PETSC_TRUE);CHKERRQ(ierr);} 1115 1116 #if defined(PETSC_HAVE_ADIOS) 1117 ierr = adios_init_noxml(PETSC_COMM_WORLD);CHKERRQ(ierr); 1118 ierr = adios_declare_group(&Petsc_adios_group,"PETSc","",adios_stat_default);CHKERRQ(ierr); 1119 ierr = adios_select_method(Petsc_adios_group,"MPI","","");CHKERRQ(ierr); 1120 ierr = adios_read_init_method(ADIOS_READ_METHOD_BP,PETSC_COMM_WORLD,"");CHKERRQ(ierr); 1121 #endif 1122 #if defined(PETSC_HAVE_ADIOS2) 1123 #endif 1124 1125 /* 1126 Set flag that we are completely initialized 1127 */ 1128 PetscInitializeCalled = PETSC_TRUE; 1129 1130 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 1131 if (flg) {ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr);} 1132 PetscFunctionReturn(0); 1133 } 1134 1135 #if defined(PETSC_USE_LOG) 1136 PETSC_INTERN PetscObject *PetscObjects; 1137 PETSC_INTERN PetscInt PetscObjectsCounts; 1138 PETSC_INTERN PetscInt PetscObjectsMaxCounts; 1139 PETSC_INTERN PetscBool PetscObjectsLog; 1140 #endif 1141 1142 /* 1143 Frees all the MPI types and operations that PETSc may have created 1144 */ 1145 PetscErrorCode PetscFreeMPIResources(void) 1146 { 1147 PetscErrorCode ierr; 1148 1149 PetscFunctionBegin; 1150 #if defined(PETSC_USE_REAL___FLOAT128) 1151 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRMPI(ierr); 1152 #if defined(PETSC_HAVE_COMPLEX) 1153 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRMPI(ierr); 1154 #endif 1155 ierr = MPI_Op_free(&MPIU_MAX);CHKERRMPI(ierr); 1156 ierr = MPI_Op_free(&MPIU_MIN);CHKERRMPI(ierr); 1157 #elif defined(PETSC_USE_REAL___FP16) 1158 ierr = MPI_Type_free(&MPIU___FP16);CHKERRMPI(ierr); 1159 ierr = MPI_Op_free(&MPIU_MAX);CHKERRMPI(ierr); 1160 ierr = MPI_Op_free(&MPIU_MIN);CHKERRMPI(ierr); 1161 #endif 1162 1163 #if defined(PETSC_HAVE_COMPLEX) 1164 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1165 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRMPI(ierr); 1166 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRMPI(ierr); 1167 #endif 1168 #endif 1169 1170 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1171 ierr = MPI_Op_free(&MPIU_SUM);CHKERRMPI(ierr); 1172 #endif 1173 1174 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRMPI(ierr); 1175 #if defined(PETSC_USE_64BIT_INDICES) 1176 ierr = MPI_Type_free(&MPIU_2INT);CHKERRMPI(ierr); 1177 #endif 1178 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRMPI(ierr); 1179 PetscFunctionReturn(0); 1180 } 1181 1182 /*@C 1183 PetscFinalize - Checks for options to be called at the conclusion 1184 of the program. MPI_Finalize() is called only if the user had not 1185 called MPI_Init() before calling PetscInitialize(). 1186 1187 Collective on PETSC_COMM_WORLD 1188 1189 Options Database Keys: 1190 + -options_view - Calls PetscOptionsView() 1191 . -options_left - Prints unused options that remain in the database 1192 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1193 . -mpidump - Calls PetscMPIDump() 1194 . -malloc_dump <optional filename> - Calls PetscMallocDump(), displays all memory allocated that has not been freed 1195 . -malloc_info - Prints total memory usage 1196 - -malloc_view <optional filename> - Prints list of all memory allocated and where 1197 1198 Level: beginner 1199 1200 Note: 1201 See PetscInitialize() for more general runtime options. 1202 1203 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1204 @*/ 1205 PetscErrorCode PetscFinalize(void) 1206 { 1207 PetscErrorCode ierr; 1208 PetscMPIInt rank; 1209 PetscInt nopt; 1210 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1211 PetscBool flg; 1212 #if defined(PETSC_USE_LOG) 1213 char mname[PETSC_MAX_PATH_LEN]; 1214 #endif 1215 1216 if (!PetscInitializeCalled) { 1217 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1218 return(PETSC_ERR_ARG_WRONGSTATE); 1219 } 1220 PetscFunctionBegin; 1221 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1222 1223 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRMPI(ierr); 1224 #if defined(PETSC_HAVE_ADIOS) 1225 ierr = adios_read_finalize_method(ADIOS_READ_METHOD_BP_AGGREGATE);CHKERRQ(ierr); 1226 ierr = adios_finalize(rank);CHKERRQ(ierr); 1227 #endif 1228 #if defined(PETSC_HAVE_ADIOS2) 1229 #endif 1230 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1231 if (flg) { 1232 char *cits, filename[PETSC_MAX_PATH_LEN]; 1233 FILE *fd = PETSC_STDOUT; 1234 1235 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,sizeof(filename),NULL);CHKERRQ(ierr); 1236 if (filename[0]) { 1237 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1238 } 1239 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1240 cits[0] = 0; 1241 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1242 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1243 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1244 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1245 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1246 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1247 ierr = PetscFree(cits);CHKERRQ(ierr); 1248 } 1249 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1250 1251 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1252 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1253 { 1254 PetscInt nmax = 2; 1255 char **buffs; 1256 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1257 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1258 if (flg1) { 1259 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1260 if (nmax == 1) { 1261 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1262 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1263 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1264 } 1265 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1266 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1267 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1268 } 1269 ierr = PetscFree(buffs);CHKERRQ(ierr); 1270 } 1271 { 1272 PetscInt nmax = 2; 1273 char **buffs; 1274 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1275 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1276 if (flg1) { 1277 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1278 if (nmax == 1) { 1279 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1280 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1281 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1282 } 1283 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1284 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1285 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1286 } 1287 ierr = PetscFree(buffs);CHKERRQ(ierr); 1288 } 1289 #endif 1290 1291 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1292 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1293 #endif 1294 1295 #if defined(PETSC_HAVE_SAWS) 1296 flg = PETSC_FALSE; 1297 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1298 if (flg) { 1299 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1300 } 1301 #endif 1302 1303 #if defined(PETSC_HAVE_X) 1304 flg1 = PETSC_FALSE; 1305 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1306 if (flg1) { 1307 /* this is a crude hack, but better than nothing */ 1308 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1309 } 1310 #endif 1311 1312 #if !defined(PETSC_HAVE_THREADSAFETY) 1313 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1314 if (!flg2) { 1315 flg2 = PETSC_FALSE; 1316 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1317 } 1318 if (flg2) { 1319 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1320 } 1321 #endif 1322 1323 #if defined(PETSC_USE_LOG) 1324 flg1 = PETSC_FALSE; 1325 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1326 if (flg1) { 1327 PetscLogDouble flops = 0; 1328 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRMPI(ierr); 1329 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1330 } 1331 #endif 1332 1333 1334 #if defined(PETSC_USE_LOG) 1335 #if defined(PETSC_HAVE_MPE) 1336 mname[0] = 0; 1337 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,sizeof(mname),&flg1);CHKERRQ(ierr); 1338 if (flg1) { 1339 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1340 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1341 } 1342 #endif 1343 #endif 1344 1345 /* 1346 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1347 */ 1348 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1349 1350 #if defined(PETSC_USE_LOG) 1351 ierr = PetscOptionsPushGetViewerOff(PETSC_FALSE);CHKERRQ(ierr); 1352 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1353 ierr = PetscOptionsPopGetViewerOff();CHKERRQ(ierr); 1354 1355 mname[0] = 0; 1356 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,sizeof(mname),&flg1);CHKERRQ(ierr); 1357 if (flg1) { 1358 PetscViewer viewer; 1359 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1360 if (mname[0]) { 1361 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1362 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1363 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1364 } else { 1365 viewer = PETSC_VIEWER_STDOUT_WORLD; 1366 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1367 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1368 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1369 } 1370 } 1371 1372 /* 1373 Free any objects created by the last block of code. 1374 */ 1375 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1376 1377 mname[0] = 0; 1378 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,sizeof(mname),&flg1);CHKERRQ(ierr); 1379 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,sizeof(mname),&flg2);CHKERRQ(ierr); 1380 if (flg1 || flg2) {ierr = PetscLogDump(mname);CHKERRQ(ierr);} 1381 #endif 1382 1383 ierr = PetscStackDestroy();CHKERRQ(ierr); 1384 1385 flg1 = PETSC_FALSE; 1386 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1387 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1388 flg1 = PETSC_FALSE; 1389 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1390 if (flg1) { 1391 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1392 } 1393 flg1 = PETSC_FALSE; 1394 flg2 = PETSC_FALSE; 1395 /* preemptive call to avoid listing this option in options table as unused */ 1396 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1397 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1398 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1399 1400 if (flg2) { 1401 PetscViewer viewer; 1402 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1403 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1404 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1405 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1406 } 1407 1408 /* to prevent PETSc -options_left from warning */ 1409 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1410 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1411 1412 flg3 = PETSC_FALSE; /* default value is required */ 1413 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1414 if (PetscUnlikelyDebug(!flg1)) flg3 = PETSC_TRUE; 1415 if (flg3) { 1416 if (!flg2 && flg1) { /* have not yet printed the options */ 1417 PetscViewer viewer; 1418 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1419 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1420 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1421 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1422 } 1423 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1424 if (nopt) { 1425 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1426 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1427 if (nopt == 1) { 1428 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1429 } else { 1430 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1431 } 1432 } else if (flg3 && flg1) { 1433 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1434 } 1435 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1436 } 1437 1438 #if defined(PETSC_HAVE_SAWS) 1439 if (!PetscGlobalRank) { 1440 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1441 PetscStackCallSAWs(SAWs_Finalize,()); 1442 } 1443 #endif 1444 1445 #if defined(PETSC_USE_LOG) 1446 /* 1447 List all objects the user may have forgot to free 1448 */ 1449 if (PetscObjectsLog) { 1450 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1451 if (flg1) { 1452 MPI_Comm local_comm; 1453 char string[64]; 1454 1455 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,sizeof(string),NULL);CHKERRQ(ierr); 1456 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRMPI(ierr); 1457 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1458 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1459 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1460 ierr = MPI_Comm_free(&local_comm);CHKERRMPI(ierr); 1461 } 1462 } 1463 #endif 1464 1465 #if defined(PETSC_USE_LOG) 1466 PetscObjectsCounts = 0; 1467 PetscObjectsMaxCounts = 0; 1468 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1469 #endif 1470 1471 /* 1472 Destroy any packages that registered a finalize 1473 */ 1474 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1475 1476 #if defined(PETSC_USE_LOG) 1477 ierr = PetscLogFinalize();CHKERRQ(ierr); 1478 #endif 1479 1480 /* 1481 Print PetscFunctionLists that have not been properly freed 1482 1483 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1484 */ 1485 1486 if (petsc_history) { 1487 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1488 petsc_history = NULL; 1489 } 1490 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1491 ierr = PetscInfoDestroy();CHKERRQ(ierr); 1492 1493 #if !defined(PETSC_HAVE_THREADSAFETY) 1494 if (!(PETSC_RUNNING_ON_VALGRIND)) { 1495 char fname[PETSC_MAX_PATH_LEN]; 1496 char sname[PETSC_MAX_PATH_LEN]; 1497 FILE *fd; 1498 int err; 1499 1500 flg2 = PETSC_FALSE; 1501 flg3 = PETSC_FALSE; 1502 if (PetscDefined(USE_DEBUG)) {ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr);} 1503 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_debug",&flg3,NULL);CHKERRQ(ierr); 1504 fname[0] = 0; 1505 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,sizeof(fname),&flg1);CHKERRQ(ierr); 1506 if (flg1 && fname[0]) { 1507 1508 PetscSNPrintf(sname,sizeof(sname),"%s_%d",fname,rank); 1509 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1510 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1511 err = fclose(fd); 1512 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1513 } else if (flg1 || flg2 || flg3) { 1514 MPI_Comm local_comm; 1515 1516 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRMPI(ierr); 1517 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1518 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1519 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1520 ierr = MPI_Comm_free(&local_comm);CHKERRMPI(ierr); 1521 } 1522 fname[0] = 0; 1523 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_view",fname,sizeof(fname),&flg1);CHKERRQ(ierr); 1524 if (flg1 && fname[0]) { 1525 1526 PetscSNPrintf(sname,sizeof(sname),"%s_%d",fname,rank); 1527 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1528 ierr = PetscMallocView(fd);CHKERRQ(ierr); 1529 err = fclose(fd); 1530 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1531 } else if (flg1) { 1532 MPI_Comm local_comm; 1533 1534 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRMPI(ierr); 1535 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1536 ierr = PetscMallocView(stdout);CHKERRQ(ierr); 1537 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1538 ierr = MPI_Comm_free(&local_comm);CHKERRMPI(ierr); 1539 } 1540 } 1541 #endif 1542 1543 /* 1544 Close any open dynamic libraries 1545 */ 1546 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1547 1548 /* Can be destroyed only after all the options are used */ 1549 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1550 1551 PetscGlobalArgc = 0; 1552 PetscGlobalArgs = NULL; 1553 1554 #if defined(PETSC_HAVE_KOKKOS) 1555 if (PetscBeganKokkos) { 1556 ierr = PetscKokkosFinalize_Private();CHKERRQ(ierr); 1557 PetscBeganKokkos = PETSC_FALSE; 1558 PetscKokkosInitialized = PETSC_FALSE; 1559 } 1560 #endif 1561 1562 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1563 1564 /* 1565 Destroy any known inner MPI_Comm's and attributes pointing to them 1566 Note this will not destroy any new communicators the user has created. 1567 1568 If all PETSc objects were not destroyed those left over objects will have hanging references to 1569 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1570 */ 1571 { 1572 PetscCommCounter *counter; 1573 PetscMPIInt flg; 1574 MPI_Comm icomm; 1575 union {MPI_Comm comm; void *ptr;} ucomm; 1576 ierr = MPI_Comm_get_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRMPI(ierr); 1577 if (flg) { 1578 icomm = ucomm.comm; 1579 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRMPI(ierr); 1580 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1581 1582 ierr = MPI_Comm_delete_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRMPI(ierr); 1583 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRMPI(ierr); 1584 ierr = MPI_Comm_free(&icomm);CHKERRMPI(ierr); 1585 } 1586 ierr = MPI_Comm_get_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRMPI(ierr); 1587 if (flg) { 1588 icomm = ucomm.comm; 1589 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRMPI(ierr); 1590 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1591 1592 ierr = MPI_Comm_delete_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRMPI(ierr); 1593 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRMPI(ierr); 1594 ierr = MPI_Comm_free(&icomm);CHKERRMPI(ierr); 1595 } 1596 } 1597 1598 ierr = MPI_Comm_free_keyval(&Petsc_Counter_keyval);CHKERRMPI(ierr); 1599 ierr = MPI_Comm_free_keyval(&Petsc_InnerComm_keyval);CHKERRMPI(ierr); 1600 ierr = MPI_Comm_free_keyval(&Petsc_OuterComm_keyval);CHKERRMPI(ierr); 1601 ierr = MPI_Comm_free_keyval(&Petsc_ShmComm_keyval);CHKERRMPI(ierr); 1602 1603 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1604 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1605 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1606 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1607 1608 if (PetscBeganMPI) { 1609 #if defined(PETSC_HAVE_MPI_FINALIZED) 1610 PetscMPIInt flag; 1611 ierr = MPI_Finalized(&flag);CHKERRMPI(ierr); 1612 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1613 #endif 1614 ierr = MPI_Finalize();CHKERRMPI(ierr); 1615 } 1616 /* 1617 1618 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1619 the communicator has some outstanding requests on it. Specifically if the 1620 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1621 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1622 is never freed as it should be. Thus one may obtain messages of the form 1623 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1624 memory was not freed. 1625 1626 */ 1627 ierr = PetscMallocClear();CHKERRQ(ierr); 1628 1629 PetscErrorHandlingInitialized = PETSC_FALSE; 1630 PetscInitializeCalled = PETSC_FALSE; 1631 PetscFinalizeCalled = PETSC_TRUE; 1632 #if defined(PETSC_USE_GCOV) 1633 /* 1634 flush gcov, otherwise during CI the flushing continues into the next pipeline resulting in git not being able to delete directories since the 1635 gcov files are still being added to the directories as git tries to remove the directories. 1636 */ 1637 __gcov_flush(); 1638 #endif 1639 PetscFunctionReturn(0); 1640 } 1641 1642 #if defined(PETSC_MISSING_LAPACK_lsame_) 1643 PETSC_EXTERN int lsame_(char *a,char *b) 1644 { 1645 if (*a == *b) return 1; 1646 if (*a + 32 == *b) return 1; 1647 if (*a - 32 == *b) return 1; 1648 return 0; 1649 } 1650 #endif 1651 1652 #if defined(PETSC_MISSING_LAPACK_lsame) 1653 PETSC_EXTERN int lsame(char *a,char *b) 1654 { 1655 if (*a == *b) return 1; 1656 if (*a + 32 == *b) return 1; 1657 if (*a - 32 == *b) return 1; 1658 return 0; 1659 } 1660 #endif 1661