1 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 9 #if defined(PETSC_USE_LOG) 10 PETSC_INTERN PetscErrorCode PetscLogInitialize(void); 11 PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 12 #endif 13 14 #if defined(PETSC_SERIALIZE_FUNCTIONS) 15 PETSC_INTERN PetscFPT PetscFPTData; 16 PetscFPT PetscFPTData = 0; 17 #endif 18 19 #if defined(PETSC_HAVE_SAWS) 20 #include <petscviewersaws.h> 21 #endif 22 /* -----------------------------------------------------------------------------------------*/ 23 24 PETSC_INTERN FILE *petsc_history; 25 26 PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 27 PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 28 PETSC_INTERN PetscErrorCode PetscFunctionListPrintAll(void); 29 PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 30 PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 31 PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE**); 32 33 /* user may set this BEFORE calling PetscInitialize() */ 34 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 35 36 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 37 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 38 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 39 PetscMPIInt Petsc_ShmComm_keyval = MPI_KEYVAL_INVALID; 40 41 /* 42 Declare and set all the string names of the PETSc enums 43 */ 44 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",0}; 45 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",0}; 46 47 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 48 PetscBool PetscPreLoadingOn = PETSC_FALSE; 49 50 PetscInt PetscHotRegionDepth; 51 52 #if defined(PETSC_HAVE_THREADSAFETY) 53 PetscSpinlock PetscViewerASCIISpinLockOpen; 54 PetscSpinlock PetscViewerASCIISpinLockStdout; 55 PetscSpinlock PetscViewerASCIISpinLockStderr; 56 PetscSpinlock PetscCommSpinLock; 57 #endif 58 59 /* 60 Checks the options database for initializations related to the 61 PETSc components 62 */ 63 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Components(void) 64 { 65 PetscBool flg; 66 PetscErrorCode ierr; 67 68 PetscFunctionBegin; 69 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 70 if (flg) { 71 #if defined(PETSC_USE_LOG) 72 MPI_Comm comm = PETSC_COMM_WORLD; 73 ierr = (*PetscHelpPrintf)(comm,"------Additional PETSc component options--------\n");CHKERRQ(ierr); 74 ierr = (*PetscHelpPrintf)(comm," -log_exclude: <vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 75 ierr = (*PetscHelpPrintf)(comm," -info_exclude: <null,vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 76 ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr); 77 #endif 78 } 79 PetscFunctionReturn(0); 80 } 81 82 /* 83 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 84 85 Collective 86 87 Level: advanced 88 89 Notes: 90 this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to 91 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 92 be called multiple times from Julia without the problem of trying to initialize MPI more than once. 93 94 Developer Note: Turns off PETSc signal handling to allow Julia to manage signals 95 96 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 97 */ 98 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 99 { 100 PetscErrorCode ierr; 101 int myargc = argc; 102 char **myargs = args; 103 104 PetscFunctionBegin; 105 ierr = PetscInitialize(&myargc,&myargs,filename,help);CHKERRQ(ierr); 106 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 107 PetscBeganMPI = PETSC_FALSE; 108 PetscFunctionReturn(ierr); 109 } 110 111 /* 112 Used by Julia interface to get communicator 113 */ 114 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 115 { 116 PetscFunctionBegin; 117 *comm = PETSC_COMM_SELF; 118 PetscFunctionReturn(0); 119 } 120 121 /*@C 122 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 123 the command line arguments. 124 125 Collective 126 127 Level: advanced 128 129 .seealso: PetscInitialize(), PetscInitializeFortran() 130 @*/ 131 PetscErrorCode PetscInitializeNoArguments(void) 132 { 133 PetscErrorCode ierr; 134 int argc = 0; 135 char **args = 0; 136 137 PetscFunctionBegin; 138 ierr = PetscInitialize(&argc,&args,NULL,NULL); 139 PetscFunctionReturn(ierr); 140 } 141 142 /*@ 143 PetscInitialized - Determine whether PETSc is initialized. 144 145 Level: beginner 146 147 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 148 @*/ 149 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 150 { 151 *isInitialized = PetscInitializeCalled; 152 return 0; 153 } 154 155 /*@ 156 PetscFinalized - Determine whether PetscFinalize() has been called yet 157 158 Level: developer 159 160 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 161 @*/ 162 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 163 { 164 *isFinalized = PetscFinalizeCalled; 165 return 0; 166 } 167 168 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(void); 169 170 /* 171 This function is the MPI reduction operation used to compute the sum of the 172 first half of the datatype and the max of the second half. 173 */ 174 MPI_Op MPIU_MAXSUM_OP = 0; 175 176 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 177 { 178 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 179 180 PetscFunctionBegin; 181 if (*datatype != MPIU_2INT) { 182 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 183 MPI_Abort(MPI_COMM_WORLD,1); 184 } 185 186 for (i=0; i<count; i++) { 187 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 188 xout[2*i+1] += xin[2*i+1]; 189 } 190 PetscFunctionReturnVoid(); 191 } 192 193 /* 194 Returns the max of the first entry owned by this processor and the 195 sum of the second entry. 196 197 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 198 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 199 there would be no place to store the both needed results. 200 */ 201 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 202 { 203 PetscErrorCode ierr; 204 205 PetscFunctionBegin; 206 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 207 { 208 struct {PetscInt max,sum;} work; 209 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 210 *max = work.max; 211 *sum = work.sum; 212 } 213 #else 214 { 215 PetscMPIInt size,rank; 216 struct {PetscInt max,sum;} *work; 217 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 218 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 219 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 220 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 221 *max = work[rank].max; 222 *sum = work[rank].sum; 223 ierr = PetscFree(work);CHKERRQ(ierr); 224 } 225 #endif 226 PetscFunctionReturn(0); 227 } 228 229 /* ----------------------------------------------------------------------------*/ 230 231 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 232 MPI_Op MPIU_SUM = 0; 233 234 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 235 { 236 PetscInt i,count = *cnt; 237 238 PetscFunctionBegin; 239 if (*datatype == MPIU_REAL) { 240 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 241 for (i=0; i<count; i++) xout[i] += xin[i]; 242 } 243 #if defined(PETSC_HAVE_COMPLEX) 244 else if (*datatype == MPIU_COMPLEX) { 245 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 246 for (i=0; i<count; i++) xout[i] += xin[i]; 247 } 248 #endif 249 else { 250 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 251 MPI_Abort(MPI_COMM_WORLD,1); 252 } 253 PetscFunctionReturnVoid(); 254 } 255 #endif 256 257 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 258 MPI_Op MPIU_MAX = 0; 259 MPI_Op MPIU_MIN = 0; 260 261 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 262 { 263 PetscInt i,count = *cnt; 264 265 PetscFunctionBegin; 266 if (*datatype == MPIU_REAL) { 267 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 268 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 269 } 270 #if defined(PETSC_HAVE_COMPLEX) 271 else if (*datatype == MPIU_COMPLEX) { 272 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 273 for (i=0; i<count; i++) { 274 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 275 } 276 } 277 #endif 278 else { 279 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 280 MPI_Abort(MPI_COMM_WORLD,1); 281 } 282 PetscFunctionReturnVoid(); 283 } 284 285 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 286 { 287 PetscInt i,count = *cnt; 288 289 PetscFunctionBegin; 290 if (*datatype == MPIU_REAL) { 291 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 292 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 293 } 294 #if defined(PETSC_HAVE_COMPLEX) 295 else if (*datatype == MPIU_COMPLEX) { 296 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 297 for (i=0; i<count; i++) { 298 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 299 } 300 } 301 #endif 302 else { 303 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 304 MPI_Abort(MPI_COMM_WORLD,1); 305 } 306 PetscFunctionReturnVoid(); 307 } 308 #endif 309 310 /* 311 Private routine to delete internal tag/name counter storage when a communicator is freed. 312 313 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 314 315 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 316 317 */ 318 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelCounter(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 319 { 320 PetscErrorCode ierr; 321 322 PetscFunctionBegin; 323 ierr = PetscInfo1(0,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 324 ierr = PetscFree(count_val);CHKERRMPI(ierr); 325 PetscFunctionReturn(MPI_SUCCESS); 326 } 327 328 /* 329 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 330 calls MPI_Comm_free(). 331 332 This is the only entry point for breaking the links between inner and outer comms. 333 334 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 335 336 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 337 338 */ 339 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Outer(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 340 { 341 PetscErrorCode ierr; 342 PetscMPIInt flg; 343 union {MPI_Comm comm; void *ptr;} icomm,ocomm; 344 345 PetscFunctionBegin; 346 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 347 icomm.ptr = attr_val; 348 349 ierr = MPI_Comm_get_attr(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 350 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected reference to outer comm"); 351 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm has reference to non-matching outer comm"); 352 ierr = MPI_Comm_delete_attr(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 353 ierr = PetscInfo1(0,"User MPI_Comm %ld is being freed after removing reference from inner PETSc comm to this outer comm\n",(long)comm);CHKERRMPI(ierr); 354 PetscFunctionReturn(MPI_SUCCESS); 355 } 356 357 /* 358 * This is invoked on the inner comm when Petsc_DelComm_Outer calls MPI_Comm_delete_attr. It should not be reached any other way. 359 */ 360 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Inner(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 361 { 362 PetscErrorCode ierr; 363 364 PetscFunctionBegin; 365 ierr = PetscInfo1(0,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 366 PetscFunctionReturn(MPI_SUCCESS); 367 } 368 369 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Shm(MPI_Comm,PetscMPIInt,void *,void *); 370 371 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 372 #if !defined(PETSC_WORDS_BIGENDIAN) 373 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 374 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 375 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 376 #endif 377 #endif 378 379 PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 380 381 PETSC_INTERN int PetscGlobalArgc; 382 PETSC_INTERN char **PetscGlobalArgs; 383 int PetscGlobalArgc = 0; 384 char **PetscGlobalArgs = 0; 385 PetscSegBuffer PetscCitationsList; 386 387 PetscErrorCode PetscCitationsInitialize(void) 388 { 389 PetscErrorCode ierr; 390 391 PetscFunctionBegin; 392 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 393 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown \n and Peter Brune and Kris Buschelman and Lisandro Dalcin and\n Victor Eijkhout and William D. Gropp and Dmitry Karpeyev and\n Dinesh Kaushik and Matthew G. Knepley and Dave A. May and Lois Curfman McInnes\n and Richard Tran Mills and Todd Munson and Karl Rupp and Patrick Sanan\n and Barry F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.11},\n Institution = {Argonne National Laboratory},\n Year = {2019}\n}\n",NULL);CHKERRQ(ierr); 394 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 395 PetscFunctionReturn(0); 396 } 397 398 static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */ 399 400 PetscErrorCode PetscSetProgramName(const char name[]) 401 { 402 PetscErrorCode ierr; 403 404 PetscFunctionBegin; 405 ierr = PetscStrncpy(programname,name,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 406 PetscFunctionReturn(0); 407 } 408 409 /*@C 410 PetscGetProgramName - Gets the name of the running program. 411 412 Not Collective 413 414 Input Parameter: 415 . len - length of the string name 416 417 Output Parameter: 418 . name - the name of the running program 419 420 Level: advanced 421 422 Notes: 423 The name of the program is copied into the user-provided character 424 array of length len. On some machines the program name includes 425 its entire path, so one should generally set len >= PETSC_MAX_PATH_LEN. 426 @*/ 427 PetscErrorCode PetscGetProgramName(char name[],size_t len) 428 { 429 PetscErrorCode ierr; 430 431 PetscFunctionBegin; 432 ierr = PetscStrncpy(name,programname,len);CHKERRQ(ierr); 433 PetscFunctionReturn(0); 434 } 435 436 /*@C 437 PetscGetArgs - Allows you to access the raw command line arguments anywhere 438 after PetscInitialize() is called but before PetscFinalize(). 439 440 Not Collective 441 442 Output Parameters: 443 + argc - count of number of command line arguments 444 - args - the command line arguments 445 446 Level: intermediate 447 448 Notes: 449 This is usually used to pass the command line arguments into other libraries 450 that are called internally deep in PETSc or the application. 451 452 The first argument contains the program name as is normal for C arguments. 453 454 Concepts: command line arguments 455 456 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 457 458 @*/ 459 PetscErrorCode PetscGetArgs(int *argc,char ***args) 460 { 461 PetscFunctionBegin; 462 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 463 *argc = PetscGlobalArgc; 464 *args = PetscGlobalArgs; 465 PetscFunctionReturn(0); 466 } 467 468 /*@C 469 PetscGetArguments - Allows you to access the command line arguments anywhere 470 after PetscInitialize() is called but before PetscFinalize(). 471 472 Not Collective 473 474 Output Parameters: 475 . args - the command line arguments 476 477 Level: intermediate 478 479 Notes: 480 This does NOT start with the program name and IS null terminated (final arg is void) 481 482 Concepts: command line arguments 483 484 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 485 486 @*/ 487 PetscErrorCode PetscGetArguments(char ***args) 488 { 489 PetscInt i,argc = PetscGlobalArgc; 490 PetscErrorCode ierr; 491 492 PetscFunctionBegin; 493 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 494 if (!argc) {*args = NULL; PetscFunctionReturn(0);} 495 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 496 for (i=0; i<argc-1; i++) { 497 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 498 } 499 (*args)[argc-1] = NULL; 500 PetscFunctionReturn(0); 501 } 502 503 /*@C 504 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 505 506 Not Collective 507 508 Output Parameters: 509 . args - the command line arguments 510 511 Level: intermediate 512 513 Concepts: command line arguments 514 515 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 516 517 @*/ 518 PetscErrorCode PetscFreeArguments(char **args) 519 { 520 PetscInt i = 0; 521 PetscErrorCode ierr; 522 523 PetscFunctionBegin; 524 if (!args) PetscFunctionReturn(0); 525 while (args[i]) { 526 ierr = PetscFree(args[i]);CHKERRQ(ierr); 527 i++; 528 } 529 ierr = PetscFree(args);CHKERRQ(ierr); 530 PetscFunctionReturn(0); 531 } 532 533 #if defined(PETSC_HAVE_SAWS) 534 #include <petscconfiginfo.h> 535 536 PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 537 { 538 if (!PetscGlobalRank) { 539 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 540 int port; 541 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 542 size_t applinelen,introlen; 543 PetscErrorCode ierr; 544 char sawsurl[256]; 545 546 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 547 if (flg) { 548 char sawslog[PETSC_MAX_PATH_LEN]; 549 550 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 551 if (sawslog[0]) { 552 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 553 } else { 554 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 555 } 556 } 557 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 558 if (flg) { 559 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 560 } 561 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 562 if (selectport) { 563 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 564 PetscStackCallSAWs(SAWs_Set_Port,(port)); 565 } else { 566 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 567 if (flg) { 568 PetscStackCallSAWs(SAWs_Set_Port,(port)); 569 } 570 } 571 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 572 if (flg) { 573 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 574 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 575 } else { 576 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 577 if (flg) { 578 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 579 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 580 } 581 } 582 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 583 if (flg2) { 584 char jsdir[PETSC_MAX_PATH_LEN]; 585 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 586 ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr); 587 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 588 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 589 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 590 } 591 ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr); 592 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 593 introlen = 4096 + applinelen; 594 applinelen += 1024; 595 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 596 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 597 598 if (rootlocal) { 599 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 600 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 601 } 602 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 603 if (rootlocal && help) { 604 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help);CHKERRQ(ierr); 605 } else if (help) { 606 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help);CHKERRQ(ierr); 607 } else { 608 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options);CHKERRQ(ierr); 609 } 610 ierr = PetscFree(options);CHKERRQ(ierr); 611 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 612 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 613 "<center><h2> <a href=\"http://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 614 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 615 "%s",version,petscconfigureoptions,appline);CHKERRQ(ierr); 616 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 617 ierr = PetscFree(intro);CHKERRQ(ierr); 618 ierr = PetscFree(appline);CHKERRQ(ierr); 619 if (selectport) { 620 PetscBool silent; 621 622 ierr = SAWs_Initialize(); 623 /* another process may have grabbed the port so keep trying */ 624 while (ierr) { 625 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 626 PetscStackCallSAWs(SAWs_Set_Port,(port)); 627 ierr = SAWs_Initialize(); 628 } 629 630 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 631 if (!silent) { 632 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 633 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 634 } 635 } else { 636 PetscStackCallSAWs(SAWs_Initialize,()); 637 } 638 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 639 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 640 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 641 " Institution = {Argonne National Laboratory},\n" 642 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 643 } 644 PetscFunctionReturn(0); 645 } 646 #endif 647 648 #if defined(PETSC_HAVE_ADIOS) 649 #include <adios.h> 650 #include <adios_read.h> 651 int64_t Petsc_adios_group; 652 #endif 653 #if defined(PETSC_HAVE_ADIOS2) 654 #include <adios2_c.h> 655 #endif 656 657 /*@C 658 PetscInitialize - Initializes the PETSc database and MPI. 659 PetscInitialize() calls MPI_Init() if that has yet to be called, 660 so this routine should always be called near the beginning of 661 your program -- usually the very first line! 662 663 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 664 665 Input Parameters: 666 + argc - count of number of command line arguments 667 . args - the command line arguments 668 . file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for 669 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 670 - help - [optional] Help message to print, use NULL for no message 671 672 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 673 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 674 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 675 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 676 if different subcommunicators of the job are doing different things with PETSc. 677 678 Options Database Keys: 679 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 680 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 681 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 682 . -on_error_emacs <machinename> - causes emacsclient to jump to error file 683 . -on_error_abort - calls abort() when error detected (no traceback) 684 . -on_error_mpiabort - calls MPI_abort() when error detected 685 . -error_output_stderr - prints error messages to stderr instead of the default stdout 686 . -error_output_none - does not print the error messages (but handles errors in the same way as if this was not called) 687 . -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger 688 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 689 . -stop_for_debugger - Print message on how to attach debugger manually to 690 process and wait (-debugger_pause) seconds for attachment 691 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) 692 . -malloc no - Indicates not to use error-checking malloc 693 . -malloc_debug - check for memory corruption at EVERY malloc or free 694 . -malloc_dump - prints a list of all unfreed memory at the end of the run 695 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds 696 . -fp_trap - Stops on floating point exceptions (Note that on the 697 IBM RS6000 this slows code by at least a factor of 10.) 698 . -no_signal_handler - Indicates not to trap error signals 699 . -shared_tmp - indicates /tmp directory is shared by all processors 700 . -not_shared_tmp - each processor has own /tmp 701 . -tmp - alternative name of /tmp directory 702 . -get_total_flops - returns total flops done by all processors 703 - -memory_view - Print memory usage at end of run 704 705 Options Database Keys for Profiling: 706 See Users-Manual: ch_profiling for details. 707 + -info <optional filename> - Prints verbose information to the screen 708 . -info_exclude <null,vec,mat,pc,ksp,snes,ts> - Excludes some of the verbose messages 709 . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 710 however it slows things down and gives a distorted view of the overall runtime. 711 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 712 hangs without running in the debugger). See PetscLogTraceBegin(). 713 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 714 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 715 summary is written to the file. See PetscLogView(). 716 . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 717 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 718 . -log [filename] - Logs basic profiline information See PetscLogDump(). 719 . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 720 . -viewfromoptions on,off - Enable or disable XXXSetFromOptions() calls, for applications with many small solves turn this off 721 - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 722 723 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 724 725 Options Database Keys for SAWs: 726 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 727 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 728 this is useful when you are running many jobs that utilize SAWs at the same time 729 . -saws_log <filename> - save a log of all SAWs communication 730 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 731 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 732 733 Environmental Variables: 734 + PETSC_TMP - alternative tmp directory 735 . PETSC_SHARED_TMP - tmp is shared by all processes 736 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 737 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 738 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 739 740 741 Level: beginner 742 743 Notes: 744 If for some reason you must call MPI_Init() separately, call 745 it before PetscInitialize(). 746 747 Fortran Version: 748 In Fortran this routine has the format 749 $ call PetscInitialize(file,ierr) 750 751 + ierr - error return code 752 - file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use PETSC_NULL_CHARACTER to not check for 753 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 754 755 Important Fortran Note: 756 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 757 null character string; you CANNOT just use NULL as 758 in the C version. See Users-Manual: ch_fortran for details. 759 760 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 761 calling PetscInitialize(). 762 763 Concepts: initializing PETSc 764 765 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 766 767 @*/ 768 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 769 { 770 PetscErrorCode ierr; 771 PetscMPIInt flag, size; 772 PetscBool flg = PETSC_TRUE; 773 char hostname[256]; 774 775 PetscFunctionBegin; 776 if (PetscInitializeCalled) PetscFunctionReturn(0); 777 /* 778 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 779 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 780 MPICH v3.1 (Released Feburary 2014) 781 IBM MPI v2.1 (December 2014) 782 Intel® MPI Library v5.0 (2014) 783 Cray MPT v7.0.0 (June 2014) 784 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 785 listed above and since that time are compatible. 786 787 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 788 at compile time or runtime. Thus we will need to systematically track the allowed versions 789 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 790 to perform the checking. 791 792 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 793 794 Questions: 795 796 Should the checks for ABI incompatibility be only on the major version number below? 797 Presumably the output to stderr will be removed before a release. 798 */ 799 800 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 801 { 802 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 803 PetscMPIInt mpilibraryversionlength; 804 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 805 /* check for MPICH versions before MPI ABI initiative */ 806 #if defined(MPICH_VERSION) 807 #if MPICH_NUMVERSION < 30100000 808 { 809 char *ver,*lf; 810 flg = PETSC_FALSE; 811 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 812 if (ver) { 813 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 814 if (lf) { 815 *lf = 0; 816 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 817 } 818 } 819 if (!flg) { 820 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 821 return PETSC_ERR_MPI_LIB_INCOMP; 822 } 823 } 824 #endif 825 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 826 #elif defined(OMPI_MAJOR_VERSION) 827 { 828 char *ver,bs[32],*bsf; 829 flg = PETSC_FALSE; 830 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 831 if (ver) { 832 PetscSNPrintf(bs,32,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 833 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 834 if (bsf) flg = PETSC_TRUE; 835 } 836 if (!flg) { 837 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 838 return PETSC_ERR_MPI_LIB_INCOMP; 839 } 840 } 841 #endif 842 } 843 #endif 844 845 846 /* these must be initialized in a routine, not as a constant declaration*/ 847 PETSC_STDOUT = stdout; 848 PETSC_STDERR = stderr; 849 850 /* on Windows - set printf to default to printing 2 digit exponents */ 851 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 852 _set_output_format(_TWO_DIGIT_EXPONENT); 853 #endif 854 855 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 856 857 /* 858 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 859 it that it sets args[0] on all processors to be args[0] on the first processor. 860 */ 861 if (argc && *argc) { 862 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 863 } else { 864 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 865 } 866 867 ierr = MPI_Initialized(&flag);CHKERRQ(ierr); 868 if (!flag) { 869 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 870 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 871 { 872 PetscMPIInt provided; 873 ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr); 874 } 875 #else 876 ierr = MPI_Init(argc,args);CHKERRQ(ierr); 877 #endif 878 PetscBeganMPI = PETSC_TRUE; 879 } 880 if (argc && args) { 881 PetscGlobalArgc = *argc; 882 PetscGlobalArgs = *args; 883 } 884 PetscFinalizeCalled = PETSC_FALSE; 885 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 886 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 887 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 888 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 889 890 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 891 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr); 892 893 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRQ(ierr); 894 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRQ(ierr); 895 896 /* Done after init due to a bug in MPICH-GM? */ 897 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 898 899 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr); 900 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr); 901 902 MPIU_BOOL = MPI_INT; 903 MPIU_ENUM = MPI_INT; 904 905 /* 906 Initialized the global complex variable; this is because with 907 shared libraries the constructors for global variables 908 are not called; at least on IRIX. 909 */ 910 #if defined(PETSC_HAVE_COMPLEX) 911 { 912 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 913 PetscComplex ic(0.0,1.0); 914 PETSC_i = ic; 915 #else 916 PETSC_i = _Complex_I; 917 #endif 918 } 919 920 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 921 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 922 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 923 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr); 924 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr); 925 #endif 926 #endif /* PETSC_HAVE_COMPLEX */ 927 928 /* 929 Create the PETSc MPI reduction operator that sums of the first 930 half of the entries and maxes the second half. 931 */ 932 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRQ(ierr); 933 934 #if defined(PETSC_USE_REAL___FLOAT128) 935 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr); 936 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr); 937 #if defined(PETSC_HAVE_COMPLEX) 938 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr); 939 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr); 940 #endif 941 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 942 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 943 #elif defined(PETSC_USE_REAL___FP16) 944 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRQ(ierr); 945 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRQ(ierr); 946 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 947 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 948 #endif 949 950 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 951 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr); 952 #endif 953 954 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr); 955 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr); 956 957 #if defined(PETSC_USE_64BIT_INDICES) 958 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr); 959 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr); 960 #endif 961 962 963 /* 964 Attributes to be set on PETSc communicators 965 */ 966 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelCounter,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr); 967 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Outer,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr); 968 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Inner,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr); 969 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Shm,&Petsc_ShmComm_keyval,(void*)0);CHKERRQ(ierr); 970 971 /* 972 Build the options database 973 */ 974 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 975 976 /* call a second time so it can look in the options database */ 977 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 978 979 /* 980 Print main application help message 981 */ 982 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 983 if (help && flg) { 984 ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr); 985 } 986 ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr); 987 988 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 989 990 #if defined(PETSC_HAVE_SAWS) 991 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 992 #endif 993 994 /* Creates the logging data structures; this is enabled even if logging is not turned on */ 995 #if defined(PETSC_USE_LOG) 996 ierr = PetscLogInitialize();CHKERRQ(ierr); 997 #endif 998 999 /* 1000 Load the dynamic libraries (on machines that support them), this registers all 1001 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 1002 */ 1003 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 1004 1005 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 1006 ierr = PetscInfo1(0,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 1007 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 1008 ierr = PetscInfo1(0,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 1009 1010 ierr = PetscOptionsCheckInitial_Components();CHKERRQ(ierr); 1011 /* Check the options database for options related to the options database itself */ 1012 ierr = PetscOptionsSetFromOptions(NULL);CHKERRQ(ierr); 1013 1014 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 1015 /* 1016 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 1017 1018 Currently not used because it is not supported by MPICH. 1019 */ 1020 #if !defined(PETSC_WORDS_BIGENDIAN) 1021 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr); 1022 #endif 1023 #endif 1024 1025 /* 1026 Setup building of stack frames for all function calls 1027 */ 1028 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 1029 ierr = PetscStackCreate();CHKERRQ(ierr); 1030 #endif 1031 1032 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1033 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 1034 #endif 1035 1036 #if defined(PETSC_HAVE_HWLOC) 1037 { 1038 PetscViewer viewer; 1039 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 1040 if (flg) { 1041 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1042 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1043 } 1044 } 1045 #endif 1046 1047 flg = PETSC_TRUE; 1048 ierr = PetscOptionsGetBool(NULL,NULL,"-viewfromoptions",&flg,NULL);CHKERRQ(ierr); 1049 if (!flg) {ierr = PetscOptionsPushGetViewerOff(PETSC_TRUE); CHKERRQ(ierr);} 1050 1051 #if defined(PETSC_HAVE_ADIOS) 1052 ierr = adios_init_noxml(PETSC_COMM_WORLD);CHKERRQ(ierr); 1053 ierr = adios_declare_group(&Petsc_adios_group,"PETSc","",adios_stat_default);CHKERRQ(ierr); 1054 ierr = adios_select_method(Petsc_adios_group,"MPI","","");CHKERRQ(ierr); 1055 ierr = adios_read_init_method(ADIOS_READ_METHOD_BP,PETSC_COMM_WORLD,"");CHKERRQ(ierr); 1056 #endif 1057 #if defined(PETSC_HAVE_ADIOS2) 1058 #endif 1059 1060 /* 1061 Once we are completedly initialized then we can set this variables 1062 */ 1063 PetscInitializeCalled = PETSC_TRUE; 1064 1065 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 1066 if (flg) {ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr);} 1067 PetscFunctionReturn(0); 1068 } 1069 1070 #if defined(PETSC_USE_LOG) 1071 PETSC_INTERN PetscObject *PetscObjects; 1072 PETSC_INTERN PetscInt PetscObjectsCounts; 1073 PETSC_INTERN PetscInt PetscObjectsMaxCounts; 1074 PETSC_INTERN PetscBool PetscObjectsLog; 1075 #endif 1076 1077 /* 1078 Frees all the MPI types and operations that PETSc may have created 1079 */ 1080 PetscErrorCode PetscFreeMPIResources(void) 1081 { 1082 PetscErrorCode ierr; 1083 1084 PetscFunctionBegin; 1085 #if defined(PETSC_USE_REAL___FLOAT128) 1086 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr); 1087 #if defined(PETSC_HAVE_COMPLEX) 1088 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr); 1089 #endif 1090 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1091 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1092 #elif defined(PETSC_USE_REAL___FP16) 1093 ierr = MPI_Type_free(&MPIU___FP16);CHKERRQ(ierr); 1094 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1095 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1096 #endif 1097 1098 #if defined(PETSC_HAVE_COMPLEX) 1099 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1100 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 1101 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr); 1102 #endif 1103 #endif 1104 1105 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1106 ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr); 1107 #endif 1108 1109 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr); 1110 #if defined(PETSC_USE_64BIT_INDICES) 1111 ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr); 1112 #endif 1113 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRQ(ierr); 1114 PetscFunctionReturn(0); 1115 } 1116 1117 /*@C 1118 PetscFinalize - Checks for options to be called at the conclusion 1119 of the program. MPI_Finalize() is called only if the user had not 1120 called MPI_Init() before calling PetscInitialize(). 1121 1122 Collective on PETSC_COMM_WORLD 1123 1124 Options Database Keys: 1125 + -options_view - Calls PetscOptionsView() 1126 . -options_left - Prints unused options that remain in the database 1127 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1128 . -mpidump - Calls PetscMPIDump() 1129 . -malloc_dump - Calls PetscMallocDump() 1130 . -malloc_info - Prints total memory usage 1131 - -malloc_log - Prints summary of memory usage 1132 1133 Level: beginner 1134 1135 Note: 1136 See PetscInitialize() for more general runtime options. 1137 1138 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1139 @*/ 1140 PetscErrorCode PetscFinalize(void) 1141 { 1142 PetscErrorCode ierr; 1143 PetscMPIInt rank; 1144 PetscInt nopt; 1145 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1146 PetscBool flg; 1147 #if defined(PETSC_USE_LOG) 1148 char mname[PETSC_MAX_PATH_LEN]; 1149 #endif 1150 1151 if (!PetscInitializeCalled) { 1152 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1153 return(PETSC_ERR_ARG_WRONGSTATE); 1154 } 1155 PetscFunctionBegin; 1156 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1157 1158 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 1159 #if defined(PETSC_HAVE_ADIOS) 1160 ierr = adios_read_finalize_method(ADIOS_READ_METHOD_BP_AGGREGATE);CHKERRQ(ierr); 1161 ierr = adios_finalize(rank);CHKERRQ(ierr); 1162 #endif 1163 #if defined(PETSC_HAVE_ADIOS2) 1164 #endif 1165 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1166 if (flg) { 1167 char *cits, filename[PETSC_MAX_PATH_LEN]; 1168 FILE *fd = PETSC_STDOUT; 1169 1170 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 1171 if (filename[0]) { 1172 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1173 } 1174 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1175 cits[0] = 0; 1176 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1177 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1178 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1179 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1180 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1181 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1182 ierr = PetscFree(cits);CHKERRQ(ierr); 1183 } 1184 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1185 1186 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1187 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1188 { 1189 PetscInt nmax = 2; 1190 char **buffs; 1191 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1192 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1193 if (flg1) { 1194 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1195 if (nmax == 1) { 1196 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1197 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1198 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1199 } 1200 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1201 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1202 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1203 } 1204 ierr = PetscFree(buffs);CHKERRQ(ierr); 1205 } 1206 { 1207 PetscInt nmax = 2; 1208 char **buffs; 1209 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1210 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1211 if (flg1) { 1212 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1213 if (nmax == 1) { 1214 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1215 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1216 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1217 } 1218 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1219 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1220 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1221 } 1222 ierr = PetscFree(buffs);CHKERRQ(ierr); 1223 } 1224 #endif 1225 /* 1226 It should be safe to cancel the options monitors, since we don't expect to be setting options 1227 here (at least that are worth monitoring). Monitors ought to be released so that they release 1228 whatever memory was allocated there before -malloc_dump reports unfreed memory. 1229 */ 1230 ierr = PetscOptionsMonitorCancel();CHKERRQ(ierr); 1231 1232 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1233 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1234 #endif 1235 1236 1237 #if defined(PETSC_HAVE_SAWS) 1238 flg = PETSC_FALSE; 1239 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1240 if (flg) { 1241 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1242 } 1243 #endif 1244 1245 #if defined(PETSC_HAVE_X) 1246 flg1 = PETSC_FALSE; 1247 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1248 if (flg1) { 1249 /* this is a crude hack, but better than nothing */ 1250 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1251 } 1252 #endif 1253 1254 #if !defined(PETSC_HAVE_THREADSAFETY) 1255 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1256 if (!flg2) { 1257 flg2 = PETSC_FALSE; 1258 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1259 } 1260 if (flg2) { 1261 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1262 } 1263 #endif 1264 1265 #if defined(PETSC_USE_LOG) 1266 flg1 = PETSC_FALSE; 1267 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1268 if (flg1) { 1269 PetscLogDouble flops = 0; 1270 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr); 1271 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1272 } 1273 #endif 1274 1275 1276 #if defined(PETSC_USE_LOG) 1277 #if defined(PETSC_HAVE_MPE) 1278 mname[0] = 0; 1279 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1280 if (flg1) { 1281 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1282 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1283 } 1284 #endif 1285 #endif 1286 1287 /* 1288 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1289 */ 1290 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1291 1292 #if defined(PETSC_USE_LOG) 1293 ierr = PetscOptionsPushGetViewerOff(PETSC_FALSE);CHKERRQ(ierr); 1294 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1295 ierr = PetscOptionsPopGetViewerOff();CHKERRQ(ierr); 1296 1297 mname[0] = 0; 1298 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1299 if (flg1) { 1300 PetscViewer viewer; 1301 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1302 if (mname[0]) { 1303 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1304 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1305 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1306 } else { 1307 viewer = PETSC_VIEWER_STDOUT_WORLD; 1308 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1309 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1310 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1311 } 1312 } 1313 1314 /* 1315 Free any objects created by the last block of code. 1316 */ 1317 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1318 1319 mname[0] = 0; 1320 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1321 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr); 1322 if (flg1 || flg2) {ierr = PetscLogDump(mname);CHKERRQ(ierr);} 1323 #endif 1324 1325 ierr = PetscStackDestroy();CHKERRQ(ierr); 1326 1327 flg1 = PETSC_FALSE; 1328 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1329 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1330 flg1 = PETSC_FALSE; 1331 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1332 if (flg1) { 1333 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1334 } 1335 flg1 = PETSC_FALSE; 1336 flg2 = PETSC_FALSE; 1337 /* preemptive call to avoid listing this option in options table as unused */ 1338 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1339 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1340 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1341 1342 if (flg2) { 1343 PetscViewer viewer; 1344 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1345 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1346 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1347 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1348 } 1349 1350 /* to prevent PETSc -options_left from warning */ 1351 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1352 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1353 1354 flg3 = PETSC_FALSE; /* default value is required */ 1355 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1356 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1357 if (flg3) { 1358 if (!flg2) { /* have not yet printed the options */ 1359 PetscViewer viewer; 1360 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1361 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1362 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1363 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1364 } 1365 if (!nopt) { 1366 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1367 } else if (nopt == 1) { 1368 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1369 } else { 1370 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1371 } 1372 } 1373 #if defined(PETSC_USE_DEBUG) 1374 if (nopt && !flg3 && !flg1) { 1375 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1376 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1377 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1378 } else if (nopt && flg3) { 1379 #else 1380 if (nopt && flg3) { 1381 #endif 1382 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1383 } 1384 1385 #if defined(PETSC_HAVE_SAWS) 1386 if (!PetscGlobalRank) { 1387 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1388 PetscStackCallSAWs(SAWs_Finalize,()); 1389 } 1390 #endif 1391 1392 #if defined(PETSC_USE_LOG) 1393 /* 1394 List all objects the user may have forgot to free 1395 */ 1396 if (PetscObjectsLog) { 1397 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1398 if (flg1) { 1399 MPI_Comm local_comm; 1400 char string[64]; 1401 1402 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr); 1403 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1404 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1405 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1406 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1407 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1408 } 1409 } 1410 #endif 1411 1412 #if defined(PETSC_USE_LOG) 1413 PetscObjectsCounts = 0; 1414 PetscObjectsMaxCounts = 0; 1415 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1416 #endif 1417 1418 /* 1419 Destroy any packages that registered a finalize 1420 */ 1421 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1422 1423 #if defined(PETSC_USE_LOG) 1424 ierr = PetscLogFinalize();CHKERRQ(ierr); 1425 #endif 1426 1427 /* 1428 Print PetscFunctionLists that have not been properly freed 1429 1430 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1431 */ 1432 1433 if (petsc_history) { 1434 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1435 petsc_history = 0; 1436 } 1437 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1438 1439 ierr = PetscInfoAllow(PETSC_FALSE,NULL);CHKERRQ(ierr); 1440 1441 #if !defined(PETSC_HAVE_THREADSAFETY) 1442 { 1443 char fname[PETSC_MAX_PATH_LEN]; 1444 FILE *fd; 1445 int err; 1446 1447 fname[0] = 0; 1448 1449 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr); 1450 flg2 = PETSC_FALSE; 1451 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr); 1452 #if defined(PETSC_USE_DEBUG) 1453 if (PETSC_RUNNING_ON_VALGRIND) flg2 = PETSC_FALSE; 1454 #else 1455 flg2 = PETSC_FALSE; /* Skip reporting for optimized builds regardless of -malloc_test */ 1456 #endif 1457 if (flg1 && fname[0]) { 1458 char sname[PETSC_MAX_PATH_LEN]; 1459 1460 PetscSNPrintf(sname,PETSC_MAX_PATH_LEN,"%s_%d",fname,rank); 1461 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1462 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1463 err = fclose(fd); 1464 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1465 } else if (flg1 || flg2) { 1466 MPI_Comm local_comm; 1467 1468 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1469 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1470 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1471 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1472 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1473 } 1474 } 1475 1476 { 1477 char fname[PETSC_MAX_PATH_LEN]; 1478 FILE *fd = NULL; 1479 1480 fname[0] = 0; 1481 1482 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_log",fname,250,&flg1);CHKERRQ(ierr); 1483 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_log_threshold",&flg2);CHKERRQ(ierr); 1484 if (flg1 && fname[0]) { 1485 int err; 1486 1487 if (!rank) { 1488 fd = fopen(fname,"w"); 1489 if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",fname); 1490 } 1491 ierr = PetscMallocDumpLog(fd);CHKERRQ(ierr); 1492 if (fd) { 1493 err = fclose(fd); 1494 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1495 } 1496 } else if (flg1 || flg2) { 1497 ierr = PetscMallocDumpLog(stdout);CHKERRQ(ierr); 1498 } 1499 } 1500 #endif 1501 1502 /* 1503 Close any open dynamic libraries 1504 */ 1505 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1506 1507 /* Can be destroyed only after all the options are used */ 1508 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1509 1510 PetscGlobalArgc = 0; 1511 PetscGlobalArgs = 0; 1512 1513 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1514 1515 /* 1516 Destroy any known inner MPI_Comm's and attributes pointing to them 1517 Note this will not destroy any new communicators the user has created. 1518 1519 If all PETSc objects were not destroyed those left over objects will have hanging references to 1520 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1521 */ 1522 { 1523 PetscCommCounter *counter; 1524 PetscMPIInt flg; 1525 MPI_Comm icomm; 1526 union {MPI_Comm comm; void *ptr;} ucomm; 1527 ierr = MPI_Comm_get_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1528 if (flg) { 1529 icomm = ucomm.comm; 1530 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1531 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1532 1533 ierr = MPI_Comm_delete_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1534 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1535 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1536 } 1537 ierr = MPI_Comm_get_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1538 if (flg) { 1539 icomm = ucomm.comm; 1540 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1541 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1542 1543 ierr = MPI_Comm_delete_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1544 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1545 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1546 } 1547 } 1548 1549 ierr = MPI_Comm_free_keyval(&Petsc_Counter_keyval);CHKERRQ(ierr); 1550 ierr = MPI_Comm_free_keyval(&Petsc_InnerComm_keyval);CHKERRQ(ierr); 1551 ierr = MPI_Comm_free_keyval(&Petsc_OuterComm_keyval);CHKERRQ(ierr); 1552 ierr = MPI_Comm_free_keyval(&Petsc_ShmComm_keyval);CHKERRQ(ierr); 1553 1554 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1555 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1556 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1557 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1558 1559 if (PetscBeganMPI) { 1560 #if defined(PETSC_HAVE_MPI_FINALIZED) 1561 PetscMPIInt flag; 1562 ierr = MPI_Finalized(&flag);CHKERRQ(ierr); 1563 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1564 #endif 1565 ierr = MPI_Finalize();CHKERRQ(ierr); 1566 } 1567 /* 1568 1569 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1570 the communicator has some outstanding requests on it. Specifically if the 1571 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1572 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1573 is never freed as it should be. Thus one may obtain messages of the form 1574 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1575 memory was not freed. 1576 1577 */ 1578 ierr = PetscMallocClear();CHKERRQ(ierr); 1579 1580 PetscInitializeCalled = PETSC_FALSE; 1581 PetscFinalizeCalled = PETSC_TRUE; 1582 PetscFunctionReturn(0); 1583 } 1584 1585 #if defined(PETSC_MISSING_LAPACK_lsame_) 1586 PETSC_EXTERN int lsame_(char *a,char *b) 1587 { 1588 if (*a == *b) return 1; 1589 if (*a + 32 == *b) return 1; 1590 if (*a - 32 == *b) return 1; 1591 return 0; 1592 } 1593 #endif 1594 1595 #if defined(PETSC_MISSING_LAPACK_lsame) 1596 PETSC_EXTERN int lsame(char *a,char *b) 1597 { 1598 if (*a == *b) return 1; 1599 if (*a + 32 == *b) return 1; 1600 if (*a - 32 == *b) return 1; 1601 return 0; 1602 } 1603 #endif 1604