xref: /petsc/src/sys/objects/pinit.c (revision cc85fe4ded5189db5e5e073ce90ef04de0003fdb)
1 
2 /*
3    This file defines the initialization of PETSc, including PetscInitialize()
4 */
5 #define PETSC_DESIRE_COMPLEX
6 #include <petsc-private/petscimpl.h>        /*I  "petscsys.h"   I*/
7 #include <petscviewer.h>
8 
9 #if defined(PETSC_HAVE_CUDA)
10 #include <cublas.h>
11 #endif
12 
13 #include <petscthreadcomm.h>
14 
15 #if defined(PETSC_USE_LOG)
16 extern PetscErrorCode PetscLogBegin_Private(void);
17 #endif
18 extern PetscBool PetscHMPIWorker;
19 
20 #if defined(PETSC_SERIALIZE_FUNCTIONS)
21 PetscFPT PetscFPTData = 0;
22 #endif
23 
24 #if defined(PETSC_HAVE_SAWS)
25 #include <petscviewersaws.h>
26 #endif
27 /* -----------------------------------------------------------------------------------------*/
28 
29 extern FILE *petsc_history;
30 
31 extern PetscErrorCode PetscInitialize_DynamicLibraries(void);
32 extern PetscErrorCode PetscFinalize_DynamicLibraries(void);
33 extern PetscErrorCode PetscFunctionListPrintAll(void);
34 extern PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int);
35 extern PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int);
36 extern PetscErrorCode PetscCloseHistoryFile(FILE**);
37 
38 /* user may set this BEFORE calling PetscInitialize() */
39 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL;
40 
41 PetscMPIInt Petsc_Counter_keyval   = MPI_KEYVAL_INVALID;
42 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID;
43 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID;
44 
45 /*
46      Declare and set all the string names of the PETSc enums
47 */
48 const char *const PetscBools[]     = {"FALSE","TRUE","PetscBool","PETSC_",0};
49 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",0};
50 const char *const PetscDataTypes[] = {"INT","DOUBLE","COMPLEX","LONG","SHORT","FLOAT",
51                                       "CHAR","LOGICAL","ENUM","BOOL","LONGDOUBLE","OBJECT","FUNCTION","PetscDataType","PETSC_",0};
52 
53 PetscBool PetscPreLoadingUsed = PETSC_FALSE;
54 PetscBool PetscPreLoadingOn   = PETSC_FALSE;
55 
56 /*
57        Checks the options database for initializations related to the
58     PETSc components
59 */
60 #undef __FUNCT__
61 #define __FUNCT__ "PetscOptionsCheckInitial_Components"
62 PetscErrorCode  PetscOptionsCheckInitial_Components(void)
63 {
64   PetscBool      flg1;
65   PetscErrorCode ierr;
66 
67   PetscFunctionBegin;
68   ierr = PetscOptionsHasName(NULL,"-help",&flg1);CHKERRQ(ierr);
69   if (flg1) {
70 #if defined(PETSC_USE_LOG)
71     MPI_Comm comm = PETSC_COMM_WORLD;
72     ierr = (*PetscHelpPrintf)(comm,"------Additional PETSc component options--------\n");CHKERRQ(ierr);
73     ierr = (*PetscHelpPrintf)(comm," -log_summary_exclude: <vec,mat,pc.ksp,snes>\n");CHKERRQ(ierr);
74     ierr = (*PetscHelpPrintf)(comm," -info_exclude: <null,vec,mat,pc,ksp,snes,ts>\n");CHKERRQ(ierr);
75     ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr);
76 #endif
77   }
78   PetscFunctionReturn(0);
79 }
80 
81 #undef __FUNCT__
82 #define __FUNCT__ "PetscInitializeNoPointers"
83 /*
84       PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args
85 
86    Collective
87 
88    Level: advanced
89 
90     Notes: this is called only by the PETSc MATLAB and Julia interface. Even though it might start MPI it sets the flag to
91      indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to
92      be called multiple times from MATLAB and Julia without the problem of trying to initialize MPI more than once.
93 
94      Turns off PETSc signal handling because that can interact with MATLAB's signal handling causing random crashes.
95 
96 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments()
97 */
98 PetscErrorCode  PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help)
99 {
100   PetscErrorCode ierr;
101   int            myargc   = argc;
102   char           **myargs = args;
103 
104   PetscFunctionBegin;
105   ierr = PetscInitialize(&myargc,&myargs,filename,help);CHKERRQ(ierr);
106   ierr = PetscPopSignalHandler();CHKERRQ(ierr);
107   PetscBeganMPI = PETSC_FALSE;
108   PetscFunctionReturn(ierr);
109 }
110 
111 #undef __FUNCT__
112 #define __FUNCT__ "PetscGetPETSC_COMM_SELF"
113 /*
114       Used by MATLAB and Julia interface to get communicator
115 */
116 PetscErrorCode  PetscGetPETSC_COMM_SELF(MPI_Comm *comm)
117 {
118   PetscFunctionBegin;
119   *comm = PETSC_COMM_SELF;
120   PetscFunctionReturn(0);
121 }
122 
123 #undef __FUNCT__
124 #define __FUNCT__ "PetscInitializeNoArguments"
125 /*@C
126       PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without
127         the command line arguments.
128 
129    Collective
130 
131    Level: advanced
132 
133 .seealso: PetscInitialize(), PetscInitializeFortran()
134 @*/
135 PetscErrorCode  PetscInitializeNoArguments(void)
136 {
137   PetscErrorCode ierr;
138   int            argc   = 0;
139   char           **args = 0;
140 
141   PetscFunctionBegin;
142   ierr = PetscInitialize(&argc,&args,NULL,NULL);
143   PetscFunctionReturn(ierr);
144 }
145 
146 #undef __FUNCT__
147 #define __FUNCT__ "PetscInitialized"
148 /*@
149       PetscInitialized - Determine whether PETSc is initialized.
150 
151    Level: beginner
152 
153 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran()
154 @*/
155 PetscErrorCode PetscInitialized(PetscBool  *isInitialized)
156 {
157   *isInitialized = PetscInitializeCalled;
158   return 0;
159 }
160 
161 #undef __FUNCT__
162 #define __FUNCT__ "PetscFinalized"
163 /*@
164       PetscFinalized - Determine whether PetscFinalize() has been called yet
165 
166    Level: developer
167 
168 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran()
169 @*/
170 PetscErrorCode  PetscFinalized(PetscBool  *isFinalized)
171 {
172   *isFinalized = PetscFinalizeCalled;
173   return 0;
174 }
175 
176 extern PetscErrorCode PetscOptionsCheckInitial_Private(void);
177 
178 /*
179        This function is the MPI reduction operation used to compute the sum of the
180    first half of the datatype and the max of the second half.
181 */
182 MPI_Op PetscMaxSum_Op = 0;
183 
184 #undef __FUNCT__
185 #define __FUNCT__ "PetscMaxSum_Local"
186 PETSC_EXTERN void MPIAPI PetscMaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype)
187 {
188   PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt;
189 
190   PetscFunctionBegin;
191   if (*datatype != MPIU_2INT) {
192     (*PetscErrorPrintf)("Can only handle MPIU_2INT data types");
193     MPI_Abort(MPI_COMM_WORLD,1);
194   }
195 
196   for (i=0; i<count; i++) {
197     xout[2*i]    = PetscMax(xout[2*i],xin[2*i]);
198     xout[2*i+1] += xin[2*i+1];
199   }
200   PetscFunctionReturnVoid();
201 }
202 
203 /*
204     Returns the max of the first entry owned by this processor and the
205 sum of the second entry.
206 
207     The reason nprocs[2*i] contains lengths nprocs[2*i+1] contains flag of 1 if length is nonzero
208 is so that the PetscMaxSum_Op() can set TWO values, if we passed in only nprocs[i] with lengths
209 there would be no place to store the both needed results.
210 */
211 #undef __FUNCT__
212 #define __FUNCT__ "PetscMaxSum"
213 PetscErrorCode  PetscMaxSum(MPI_Comm comm,const PetscInt nprocs[],PetscInt *max,PetscInt *sum)
214 {
215   PetscMPIInt    size,rank;
216   struct {PetscInt max,sum;} *work;
217   PetscErrorCode ierr;
218 
219   PetscFunctionBegin;
220   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
221   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
222   ierr = PetscMalloc(size*sizeof(*work),&work);CHKERRQ(ierr);
223   ierr = MPI_Allreduce((void*)nprocs,work,size,MPIU_2INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
224   *max = work[rank].max;
225   *sum = work[rank].sum;
226   ierr = PetscFree(work);CHKERRQ(ierr);
227   PetscFunctionReturn(0);
228 }
229 
230 /* ----------------------------------------------------------------------------*/
231 MPI_Op  PetscADMax_Op = 0;
232 
233 #undef __FUNCT__
234 #define __FUNCT__ "PetscADMax_Local"
235 PETSC_EXTERN void MPIAPI PetscADMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype)
236 {
237   PetscScalar *xin = (PetscScalar*)in,*xout = (PetscScalar*)out;
238   PetscInt    i,count = *cnt;
239 
240   PetscFunctionBegin;
241   if (*datatype != MPIU_2SCALAR) {
242     (*PetscErrorPrintf)("Can only handle MPIU_2SCALAR data (i.e. double or complex) types");
243     MPI_Abort(MPI_COMM_WORLD,1);
244   }
245 
246   for (i=0; i<count; i++) {
247     if (PetscRealPart(xout[2*i]) < PetscRealPart(xin[2*i])) {
248       xout[2*i]   = xin[2*i];
249       xout[2*i+1] = xin[2*i+1];
250     }
251   }
252   PetscFunctionReturnVoid();
253 }
254 
255 MPI_Op PetscADMin_Op = 0;
256 
257 #undef __FUNCT__
258 #define __FUNCT__ "PetscADMin_Local"
259 PETSC_EXTERN void MPIAPI PetscADMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype)
260 {
261   PetscScalar *xin = (PetscScalar*)in,*xout = (PetscScalar*)out;
262   PetscInt    i,count = *cnt;
263 
264   PetscFunctionBegin;
265   if (*datatype != MPIU_2SCALAR) {
266     (*PetscErrorPrintf)("Can only handle MPIU_2SCALAR data (i.e. double or complex) types");
267     MPI_Abort(MPI_COMM_WORLD,1);
268   }
269 
270   for (i=0; i<count; i++) {
271     if (PetscRealPart(xout[2*i]) > PetscRealPart(xin[2*i])) {
272       xout[2*i]   = xin[2*i];
273       xout[2*i+1] = xin[2*i+1];
274     }
275   }
276   PetscFunctionReturnVoid();
277 }
278 /* ---------------------------------------------------------------------------------------*/
279 
280 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128)
281 MPI_Op MPIU_SUM = 0;
282 
283 #undef __FUNCT__
284 #define __FUNCT__ "PetscSum_Local"
285 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype)
286 {
287   PetscInt i,count = *cnt;
288 
289   PetscFunctionBegin;
290   if (*datatype == MPIU_REAL) {
291     PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out;
292     for (i=0; i<count; i++) xout[i] += xin[i];
293   }
294 #if defined(PETSC_HAVE_COMPLEX)
295   else if (*datatype == MPIU_COMPLEX) {
296     PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out;
297     for (i=0; i<count; i++) xout[i] += xin[i];
298   }
299 #endif
300   else {
301     (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types");
302     MPI_Abort(MPI_COMM_WORLD,1);
303   }
304   PetscFunctionReturnVoid();
305 }
306 #endif
307 
308 #if defined(PETSC_USE_REAL___FLOAT128)
309 MPI_Op MPIU_MAX = 0;
310 MPI_Op MPIU_MIN = 0;
311 
312 #undef __FUNCT__
313 #define __FUNCT__ "PetscMax_Local"
314 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype)
315 {
316   PetscInt i,count = *cnt;
317 
318   PetscFunctionBegin;
319   if (*datatype == MPIU_REAL) {
320     PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out;
321     for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]);
322   }
323 #if defined(PETSC_HAVE_COMPLEX)
324   else if (*datatype == MPIU_COMPLEX) {
325     PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out;
326     for (i=0; i<count; i++) {
327       xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i];
328     }
329   }
330 #endif
331   else {
332     (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types");
333     MPI_Abort(MPI_COMM_WORLD,1);
334   }
335   PetscFunctionReturnVoid();
336 }
337 
338 #undef __FUNCT__
339 #define __FUNCT__ "PetscMin_Local"
340 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype)
341 {
342   PetscInt    i,count = *cnt;
343 
344   PetscFunctionBegin;
345   if (*datatype == MPIU_REAL) {
346     PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out;
347     for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]);
348   }
349 #if defined(PETSC_HAVE_COMPLEX)
350   else if (*datatype == MPIU_COMPLEX) {
351     PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out;
352     for (i=0; i<count; i++) {
353       xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i];
354     }
355   }
356 #endif
357   else {
358     (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types");
359     MPI_Abort(MPI_COMM_WORLD,1);
360   }
361   PetscFunctionReturnVoid();
362 }
363 #endif
364 
365 #undef __FUNCT__
366 #define __FUNCT__ "Petsc_DelCounter"
367 /*
368    Private routine to delete internal tag/name counter storage when a communicator is freed.
369 
370    This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this  data as an attribute is freed.
371 
372    Note: this is declared extern "C" because it is passed to MPI_Keyval_create()
373 
374 */
375 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelCounter(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state)
376 {
377   PetscErrorCode ierr;
378 
379   PetscFunctionBegin;
380   ierr = PetscInfo1(0,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);if (ierr) PetscFunctionReturn((PetscMPIInt)ierr);
381   ierr = PetscFree(count_val);if (ierr) PetscFunctionReturn((PetscMPIInt)ierr);
382   PetscFunctionReturn(MPI_SUCCESS);
383 }
384 
385 #undef __FUNCT__
386 #define __FUNCT__ "Petsc_DelComm_Outer"
387 /*
388   This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Attr_delete) or when the user
389   calls MPI_Comm_free().
390 
391   This is the only entry point for breaking the links between inner and outer comms.
392 
393   This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator.
394 
395   Note: this is declared extern "C" because it is passed to MPI_Keyval_create()
396 
397 */
398 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Outer(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state)
399 {
400   PetscErrorCode ierr;
401   PetscMPIInt    flg;
402   union {MPI_Comm comm; void *ptr;} icomm,ocomm;
403 
404   PetscFunctionBegin;
405   if (keyval != Petsc_InnerComm_keyval) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval");
406   icomm.ptr = attr_val;
407 
408   ierr = MPI_Attr_get(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRQ(ierr);
409   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected reference to outer comm");
410   if (ocomm.comm != comm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm has reference to non-matching outer comm");
411   ierr = MPI_Attr_delete(icomm.comm,Petsc_OuterComm_keyval);CHKERRQ(ierr); /* Calls Petsc_DelComm_Inner */
412   ierr = PetscInfo1(0,"User MPI_Comm %ld is being freed after removing reference from inner PETSc comm to this outer comm\n",(long)comm);if (ierr) PetscFunctionReturn((PetscMPIInt)ierr);
413   PetscFunctionReturn(MPI_SUCCESS);
414 }
415 
416 #undef __FUNCT__
417 #define __FUNCT__ "Petsc_DelComm_Inner"
418 /*
419  * This is invoked on the inner comm when Petsc_DelComm_Outer calls MPI_Attr_delete.  It should not be reached any other way.
420  */
421 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Inner(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state)
422 {
423   PetscErrorCode ierr;
424 
425   PetscFunctionBegin;
426   ierr = PetscInfo1(0,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);if (ierr) PetscFunctionReturn((PetscMPIInt)ierr);
427   PetscFunctionReturn(MPI_SUCCESS);
428 }
429 
430 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32)
431 #if !defined(PETSC_WORDS_BIGENDIAN)
432 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*);
433 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*);
434 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*);
435 #endif
436 #endif
437 
438 int  PetscGlobalArgc   = 0;
439 char **PetscGlobalArgs = 0;
440 PetscSegBuffer PetscCitationsList;
441 
442 #undef __FUNCT__
443 #define __FUNCT__ "PetscCitationsInitialize"
444 PetscErrorCode PetscCitationsInitialize()
445 {
446   PetscErrorCode ierr;
447 
448   PetscFunctionBegin;
449   ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr);
450   ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n  Author = {Satish Balay and Jed Brown and and Kris Buschelman and Victor Eijkhout\n            and William D.  Gropp and Dinesh Kaushik and Matthew G. Knepley\n            and Lois Curfman McInnes and Barry F. Smith and Hong Zhang},\n  Title = {{PETS}c Users Manual},\n  Number = {ANL-95/11 - Revision 3.4},\n  Institution = {Argonne National Laboratory},\n  Year = {2013}\n}\n",NULL);CHKERRQ(ierr);
451   ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n  Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n  Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n  Booktitle = {Modern Software Tools in Scientific Computing},\n  Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n  Pages = {163--202},\n  Publisher = {Birkh{\\\"{a}}user Press},\n  Year = {1997}\n}\n",NULL);CHKERRQ(ierr);
452   PetscFunctionReturn(0);
453 }
454 
455 #undef __FUNCT__
456 #define __FUNCT__ "PetscGetArgs"
457 /*@C
458    PetscGetArgs - Allows you to access the raw command line arguments anywhere
459      after PetscInitialize() is called but before PetscFinalize().
460 
461    Not Collective
462 
463    Output Parameters:
464 +  argc - count of number of command line arguments
465 -  args - the command line arguments
466 
467    Level: intermediate
468 
469    Notes:
470       This is usually used to pass the command line arguments into other libraries
471    that are called internally deep in PETSc or the application.
472 
473       The first argument contains the program name as is normal for C arguments.
474 
475    Concepts: command line arguments
476 
477 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments()
478 
479 @*/
480 PetscErrorCode  PetscGetArgs(int *argc,char ***args)
481 {
482   PetscFunctionBegin;
483   if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()");
484   *argc = PetscGlobalArgc;
485   *args = PetscGlobalArgs;
486   PetscFunctionReturn(0);
487 }
488 
489 #undef __FUNCT__
490 #define __FUNCT__ "PetscGetArguments"
491 /*@C
492    PetscGetArguments - Allows you to access the  command line arguments anywhere
493      after PetscInitialize() is called but before PetscFinalize().
494 
495    Not Collective
496 
497    Output Parameters:
498 .  args - the command line arguments
499 
500    Level: intermediate
501 
502    Notes:
503       This does NOT start with the program name and IS null terminated (final arg is void)
504 
505    Concepts: command line arguments
506 
507 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments()
508 
509 @*/
510 PetscErrorCode  PetscGetArguments(char ***args)
511 {
512   PetscInt       i,argc = PetscGlobalArgc;
513   PetscErrorCode ierr;
514 
515   PetscFunctionBegin;
516   if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()");
517   if (!argc) {*args = 0; PetscFunctionReturn(0);}
518   ierr = PetscMalloc(argc*sizeof(char*),args);CHKERRQ(ierr);
519   for (i=0; i<argc-1; i++) {
520     ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr);
521   }
522   (*args)[argc-1] = 0;
523   PetscFunctionReturn(0);
524 }
525 
526 #undef __FUNCT__
527 #define __FUNCT__ "PetscFreeArguments"
528 /*@C
529    PetscFreeArguments - Frees the memory obtained with PetscGetArguments()
530 
531    Not Collective
532 
533    Output Parameters:
534 .  args - the command line arguments
535 
536    Level: intermediate
537 
538    Concepts: command line arguments
539 
540 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments()
541 
542 @*/
543 PetscErrorCode  PetscFreeArguments(char **args)
544 {
545   PetscInt       i = 0;
546   PetscErrorCode ierr;
547 
548   PetscFunctionBegin;
549   if (!args) PetscFunctionReturn(0);
550   while (args[i]) {
551     ierr = PetscFree(args[i]);CHKERRQ(ierr);
552     i++;
553   }
554   ierr = PetscFree(args);CHKERRQ(ierr);
555   PetscFunctionReturn(0);
556 }
557 
558 #undef __FUNCT__
559 #define __FUNCT__ "PetscInitialize"
560 /*@C
561    PetscInitialize - Initializes the PETSc database and MPI.
562    PetscInitialize() calls MPI_Init() if that has yet to be called,
563    so this routine should always be called near the beginning of
564    your program -- usually the very first line!
565 
566    Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set
567 
568    Input Parameters:
569 +  argc - count of number of command line arguments
570 .  args - the command line arguments
571 .  file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for
572           code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files
573 -  help - [optional] Help message to print, use NULL for no message
574 
575    If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that
576    communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a
577    four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not,
578    then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even
579    if different subcommunicators of the job are doing different things with PETSc.
580 
581    Options Database Keys:
582 +  -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger
583 .  -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected
584 .  -on_error_emacs <machinename> causes emacsclient to jump to error file
585 .  -on_error_abort calls abort() when error detected (no traceback)
586 .  -on_error_mpiabort calls MPI_abort() when error detected
587 .  -error_output_stderr prints error messages to stderr instead of the default stdout
588 .  -error_output_none does not print the error messages (but handles errors in the same way as if this was not called)
589 .  -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger
590 .  -debugger_pause [sleeptime] (in seconds) - Pauses debugger
591 .  -stop_for_debugger - Print message on how to attach debugger manually to
592                         process and wait (-debugger_pause) seconds for attachment
593 .  -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries)
594 .  -malloc no - Indicates not to use error-checking malloc
595 .  -malloc_debug - check for memory corruption at EVERY malloc or free
596 .  -malloc_dump - prints a list of all unfreed memory at the end of the run
597 .  -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds
598 .  -fp_trap - Stops on floating point exceptions (Note that on the
599               IBM RS6000 this slows code by at least a factor of 10.)
600 .  -no_signal_handler - Indicates not to trap error signals
601 .  -shared_tmp - indicates /tmp directory is shared by all processors
602 .  -not_shared_tmp - each processor has own /tmp
603 .  -tmp - alternative name of /tmp directory
604 .  -get_total_flops - returns total flops done by all processors
605 .  -memory_info - Print memory usage at end of run
606 -  -server <port> - start PETSc webserver (default port is 8080)
607 
608    Options Database Keys for Profiling:
609    See the <a href="../../docs/manual.pdf#nameddest=ch_profiling">profiling chapter of the users manual</a> for details.
610 +  -info <optional filename> - Prints verbose information to the screen
611 .  -info_exclude <null,vec,mat,pc,ksp,snes,ts> - Excludes some of the verbose messages
612 .  -log_sync - Log the synchronization in scatters, inner products and norms
613 .  -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program
614         hangs without running in the debugger).  See PetscLogTraceBegin().
615 .  -log_summary [filename] - Prints summary of flop and timing information to screen. If the filename is specified the
616         summary is written to the file.  See PetscLogView().
617 .  -log_summary_python [filename] - Prints data on of flop and timing usage to a file or screen. See PetscLogPrintSViewPython().
618 .  -log_all [filename] - Logs extensive profiling information  See PetscLogDump().
619 .  -log [filename] - Logs basic profiline information  See PetscLogDump().
620 -  -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution)
621 
622     Only one of -log_trace, -log_summary, -log_all, -log, or -log_mpe may be used at a time
623 
624    Environmental Variables:
625 +   PETSC_TMP - alternative tmp directory
626 .   PETSC_SHARED_TMP - tmp is shared by all processes
627 .   PETSC_NOT_SHARED_TMP - each process has its own private tmp
628 .   PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer
629 -   PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to
630 
631 
632    Level: beginner
633 
634    Notes:
635    If for some reason you must call MPI_Init() separately, call
636    it before PetscInitialize().
637 
638    Fortran Version:
639    In Fortran this routine has the format
640 $       call PetscInitialize(file,ierr)
641 
642 +   ierr - error return code
643 -  file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL_CHARACTER to not check for
644           code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files
645 
646    Important Fortran Note:
647    In Fortran, you MUST use NULL_CHARACTER to indicate a
648    null character string; you CANNOT just use NULL as
649    in the C version. See the <a href="../../docs/manual.pdf">users manual</a> for details.
650 
651    If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after
652    calling PetscInitialize().
653 
654    Concepts: initializing PETSc
655 
656 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments()
657 
658 @*/
659 PetscErrorCode  PetscInitialize(int *argc,char ***args,const char file[],const char help[])
660 {
661   PetscErrorCode ierr;
662   PetscMPIInt    flag, size;
663   PetscInt       nodesize;
664   PetscBool      flg;
665   char           hostname[256];
666 
667   PetscFunctionBegin;
668   if (PetscInitializeCalled) PetscFunctionReturn(0);
669 
670   /* these must be initialized in a routine, not as a constant declaration*/
671   PETSC_STDOUT = stdout;
672   PETSC_STDERR = stderr;
673 
674   ierr = PetscOptionsCreate();CHKERRQ(ierr);
675 
676   /*
677      We initialize the program name here (before MPI_Init()) because MPICH has a bug in
678      it that it sets args[0] on all processors to be args[0] on the first processor.
679   */
680   if (argc && *argc) {
681     ierr = PetscSetProgramName(**args);CHKERRQ(ierr);
682   } else {
683     ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr);
684   }
685 
686   ierr = MPI_Initialized(&flag);CHKERRQ(ierr);
687   if (!flag) {
688     if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first");
689 #if defined(PETSC_HAVE_MPI_INIT_THREAD)
690     {
691       PetscMPIInt provided;
692       ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr);
693     }
694 #else
695     ierr = MPI_Init(argc,args);CHKERRQ(ierr);
696 #endif
697     PetscBeganMPI = PETSC_TRUE;
698   }
699   if (argc && args) {
700     PetscGlobalArgc = *argc;
701     PetscGlobalArgs = *args;
702   }
703   PetscFinalizeCalled = PETSC_FALSE;
704 
705   if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD;
706   ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr);
707 
708   /* Done after init due to a bug in MPICH-GM? */
709   ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr);
710 
711   ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr);
712   ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr);
713 
714   MPIU_BOOL = MPI_INT;
715   MPIU_ENUM = MPI_INT;
716 
717   /*
718      Initialized the global complex variable; this is because with
719      shared libraries the constructors for global variables
720      are not called; at least on IRIX.
721   */
722 #if defined(PETSC_HAVE_COMPLEX)
723   {
724 #if defined(PETSC_CLANGUAGE_CXX)
725     PetscComplex ic(0.0,1.0);
726     PETSC_i = ic;
727 #elif defined(PETSC_CLANGUAGE_C)
728     PETSC_i = _Complex_I;
729 #endif
730   }
731 
732 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)
733   ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr);
734   ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr);
735   ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr);
736   ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr);
737 #endif
738 #endif /* PETSC_HAVE_COMPLEX */
739 
740   /*
741      Create the PETSc MPI reduction operator that sums of the first
742      half of the entries and maxes the second half.
743   */
744   ierr = MPI_Op_create(PetscMaxSum_Local,1,&PetscMaxSum_Op);CHKERRQ(ierr);
745 
746 #if defined(PETSC_USE_REAL___FLOAT128)
747   ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr);
748   ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr);
749 #if defined(PETSC_HAVE_COMPLEX)
750   ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr);
751   ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr);
752 #endif
753   ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr);
754   ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr);
755 #endif
756 
757 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128)
758   ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr);
759 #endif
760 
761   ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr);
762   ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr);
763   ierr = MPI_Op_create(PetscADMax_Local,1,&PetscADMax_Op);CHKERRQ(ierr);
764   ierr = MPI_Op_create(PetscADMin_Local,1,&PetscADMin_Op);CHKERRQ(ierr);
765 
766 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT)
767   ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr);
768   ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr);
769 #endif
770 
771 
772   /*
773      Attributes to be set on PETSc communicators
774   */
775   ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,Petsc_DelCounter,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr);
776   ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,Petsc_DelComm_Outer,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr);
777   ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,Petsc_DelComm_Inner,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr);
778 
779   /*
780      Build the options database
781   */
782   ierr = PetscOptionsInsert(argc,args,file);CHKERRQ(ierr);
783 
784 
785   /*
786      Print main application help message
787   */
788   ierr = PetscOptionsHasName(NULL,"-help",&flg);CHKERRQ(ierr);
789   if (help && flg) {
790     ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr);
791   }
792   ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr);
793 
794   ierr = PetscCitationsInitialize();CHKERRQ(ierr);
795 
796 #if defined(PETSC_HAVE_SAWS)
797   if (!PetscGlobalRank) {
798     char        cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],intro[4024],programname[64],appline[256];
799     int         port;
800     PetscBool   rootlocal = PETSC_FALSE,flg2;
801 
802     ierr = PetscOptionsHasName(NULL,"-saws_log",&flg);CHKERRQ(ierr);
803     if (flg) {
804       char  sawslog[PETSC_MAX_PATH_LEN];
805 
806       ierr = PetscOptionsGetString(NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr);
807       if (sawslog[0]) {
808         PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog));
809       } else {
810         PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL));
811       }
812     }
813     ierr = PetscOptionsGetString(NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr);
814     if (flg) {
815       PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert));
816     }
817     ierr = PetscOptionsGetInt(NULL,"-saws_port",&port,&flg);CHKERRQ(ierr);
818     if (flg) {
819       PetscStackCallSAWs(SAWs_Set_Port,(port));
820     }
821     ierr = PetscOptionsGetString(NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr);
822     if (flg) {
823       PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr);
824       ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr);
825     }
826     ierr = PetscOptionsHasName(NULL,"-saws_local",&flg2);CHKERRQ(ierr);
827     if (flg2) {
828       char jsdir[PETSC_MAX_PATH_LEN];
829       if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option");
830       ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr);
831       ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr);
832       if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory");
833       PetscStackCallSAWs(SAWs_Set_Local_JSHeader,());CHKERRQ(ierr);
834     }
835     ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr);
836     if (rootlocal) {
837       ierr = PetscSNPrintf(appline,256,"%s.c.html",programname);CHKERRQ(ierr);
838       ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr);
839     }
840     if (rootlocal && help) {
841       ierr = PetscSNPrintf(appline,256,"<center> Running <a href=\"%s.c.html\">%s</a> which %s </center><br>\n",programname,programname,help);
842     } else if (help) {
843       ierr = PetscSNPrintf(appline,256,"<center> Running %s which %s </center><br>\n",programname,help);
844     } else {
845       ierr = PetscSNPrintf(appline,256,"<center> Running %s</center><br>\n",programname);
846     }
847 
848     ierr = PetscSNPrintf(intro,4024,"<body>\n"
849                                     "<center><h2> <a href=\"http://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n"
850                                     "%s"
851                                     "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br>\n",appline);
852     PetscStackCallSAWs(SAWs_Set_Body,("index.html",0,intro));
853     PetscStackCallSAWs(SAWs_Initialize,());
854     ierr = PetscCitationsRegister("@TechReport{ saws,"
855                                   "Author = {Matt Otten and Jed Brown and Barry Smith},"
856                                   "Title  = {Scientific Application Web Server (SAWs) Users Manual},"
857                                   "Institution = {Argonne National Laboratory},"
858                                   "Year   = 2013}",NULL);CHKERRQ(ierr);
859   }
860 
861 #endif
862 
863   /* SHOULD PUT IN GUARDS: Make sure logging is initialized, even if we do not print it out */
864 #if defined(PETSC_USE_LOG)
865   ierr = PetscLogBegin_Private();CHKERRQ(ierr);
866 #endif
867 
868   /*
869      Load the dynamic libraries (on machines that support them), this registers all
870      the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes)
871   */
872   ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr);
873 
874   ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);
875   ierr = PetscInfo1(0,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr);
876   ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr);
877   ierr = PetscInfo1(0,"Running on machine: %s\n",hostname);CHKERRQ(ierr);
878 
879   ierr = PetscOptionsCheckInitial_Components();CHKERRQ(ierr);
880   /* Check the options database for options related to the options database itself */
881   ierr = PetscOptionsSetFromOptions();CHKERRQ(ierr);
882 
883 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32)
884   /*
885       Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI
886 
887       Currently not used because it is not supported by MPICH.
888   */
889 #if !defined(PETSC_WORDS_BIGENDIAN)
890   ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr);
891 #endif
892 #endif
893 
894   ierr = PetscOptionsGetInt(NULL,"-hmpi_spawn_size",&nodesize,&flg);CHKERRQ(ierr);
895   if (flg) {
896 #if defined(PETSC_HAVE_MPI_COMM_SPAWN)
897     ierr = PetscHMPISpawn((PetscMPIInt) nodesize);CHKERRQ(ierr); /* worker nodes never return from here; they go directly to PetscEnd() */
898 #else
899     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"PETSc built without MPI 2 (MPI_Comm_spawn) support, use -hmpi_merge_size instead");
900 #endif
901   } else {
902     ierr = PetscOptionsGetInt(NULL,"-hmpi_merge_size",&nodesize,&flg);CHKERRQ(ierr);
903     if (flg) {
904       ierr = PetscHMPIMerge((PetscMPIInt) nodesize,NULL,NULL);CHKERRQ(ierr);
905       if (PetscHMPIWorker) { /* if worker then never enter user code */
906         PetscInitializeCalled = PETSC_TRUE;
907         PetscEnd();
908       }
909     }
910   }
911 
912 #if defined(PETSC_HAVE_CUDA)
913   {
914     PetscMPIInt p;
915     for (p = 0; p < PetscGlobalSize; ++p) {
916       if (p == PetscGlobalRank) cublasInit();
917       ierr = MPI_Barrier(PETSC_COMM_WORLD);CHKERRQ(ierr);
918     }
919   }
920 #endif
921 
922   ierr = PetscOptionsHasName(NULL,"-python",&flg);CHKERRQ(ierr);
923   if (flg) {
924     PetscInitializeCalled = PETSC_TRUE;
925     ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr);
926   }
927 
928   ierr = PetscThreadCommInitializePackage();CHKERRQ(ierr);
929 
930   /*
931       Setup building of stack frames for all function calls
932   */
933   PetscThreadLocalRegister((PetscThreadKey*)&petscstack); /* Creates pthread_key */
934 #if defined(PETSC_USE_DEBUG)
935   ierr = PetscStackCreate();CHKERRQ(ierr);
936 #endif
937 
938 #if defined(PETSC_SERIALIZE_FUNCTIONS)
939   ierr = PetscFPTCreate(10000);CHKERRQ(ierr);
940 #endif
941 
942 
943   /*
944       Once we are completedly initialized then we can set this variables
945   */
946   PetscInitializeCalled = PETSC_TRUE;
947   PetscFunctionReturn(0);
948 }
949 
950 extern PetscObject *PetscObjects;
951 extern PetscInt    PetscObjectsCounts, PetscObjectsMaxCounts;
952 
953 #undef __FUNCT__
954 #define __FUNCT__ "PetscFinalize"
955 /*@C
956    PetscFinalize - Checks for options to be called at the conclusion
957    of the program. MPI_Finalize() is called only if the user had not
958    called MPI_Init() before calling PetscInitialize().
959 
960    Collective on PETSC_COMM_WORLD
961 
962    Options Database Keys:
963 +  -options_table - Calls PetscOptionsView()
964 .  -options_left - Prints unused options that remain in the database
965 .  -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed
966 .  -mpidump - Calls PetscMPIDump()
967 .  -malloc_dump - Calls PetscMallocDump()
968 .  -malloc_info - Prints total memory usage
969 -  -malloc_log - Prints summary of memory usage
970 
971    Level: beginner
972 
973    Note:
974    See PetscInitialize() for more general runtime options.
975 
976 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd()
977 @*/
978 PetscErrorCode  PetscFinalize(void)
979 {
980   PetscErrorCode ierr;
981   PetscMPIInt    rank;
982   PetscInt       nopt;
983   PetscBool      flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE;
984   PetscBool      flg;
985 #if defined(PETSC_USE_LOG)
986   char           mname[PETSC_MAX_PATH_LEN];
987 #endif
988 
989   PetscFunctionBegin;
990   if (!PetscInitializeCalled) {
991     printf("PetscInitialize() must be called before PetscFinalize()\n");
992     PetscFunctionReturn(PETSC_ERR_ARG_WRONGSTATE);
993   }
994   ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr);
995 
996   ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
997 
998   ierr = PetscOptionsHasName(NULL,"-citations",&flg);CHKERRQ(ierr);
999   if (flg) {
1000     char  *cits, filename[PETSC_MAX_PATH_LEN];
1001     FILE  *fd = PETSC_STDOUT;
1002 
1003     ierr = PetscOptionsGetString(NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr);
1004     if (filename[0]) {
1005       ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr);
1006     }
1007     ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr);
1008     cits[0] = 0;
1009     ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr);
1010     ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr);
1011     ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr);
1012     ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr);
1013     ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr);
1014     ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr);
1015     ierr = PetscFree(cits);CHKERRQ(ierr);
1016   }
1017   ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr);
1018 
1019 #if defined(PETSC_SERIALIZE_FUNCTIONS)
1020   ierr = PetscFPTDestroy();CHKERRQ(ierr);
1021 #endif
1022 
1023 
1024 #if defined(PETSC_HAVE_SAWS)
1025   flg = PETSC_FALSE;
1026   ierr = PetscOptionsGetBool(NULL,"-options_gui",&flg,NULL);CHKERRQ(ierr);
1027   if (flg) {
1028     ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr);
1029   }
1030 #endif
1031 
1032 #if defined(PETSC_HAVE_SERVER)
1033   flg1 = PETSC_FALSE;
1034   ierr = PetscOptionsGetBool(NULL,"-server",&flg1,NULL);CHKERRQ(ierr);
1035   if (flg1) {
1036     /*  this is a crude hack, but better than nothing */
1037     ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 petscwebserver","r",NULL);CHKERRQ(ierr);
1038   }
1039 #endif
1040 
1041 #if defined(PETSC_HAVE_X)
1042   flg1 = PETSC_FALSE;
1043   ierr = PetscOptionsGetBool(NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr);
1044   if (flg1) {
1045     /*  this is a crude hack, but better than nothing */
1046     ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr);
1047   }
1048 #endif
1049 
1050   ierr = PetscHMPIFinalize();CHKERRQ(ierr);
1051 
1052   ierr = PetscOptionsGetBool(NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr);
1053   if (!flg2) {
1054     flg2 = PETSC_FALSE;
1055     ierr = PetscOptionsGetBool(NULL,"-memory_info",&flg2,NULL);CHKERRQ(ierr);
1056   }
1057   if (flg2) {
1058     ierr = PetscMemoryShowUsage(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr);
1059   }
1060 
1061 #if defined(PETSC_USE_LOG)
1062   flg1 = PETSC_FALSE;
1063   ierr = PetscOptionsGetBool(NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr);
1064   if (flg1) {
1065     PetscLogDouble flops = 0;
1066     ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr);
1067     ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr);
1068   }
1069 #endif
1070 
1071 
1072 #if defined(PETSC_USE_LOG)
1073 #if defined(PETSC_HAVE_MPE)
1074   mname[0] = 0;
1075 
1076   ierr = PetscOptionsGetString(NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr);
1077   if (flg1) {
1078     if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);}
1079     else          {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);}
1080   }
1081 #endif
1082   mname[0] = 0;
1083 
1084   ierr = PetscOptionsGetString(NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr);
1085   if (flg1) {
1086     PetscViewer viewer;
1087     if (mname[0]) {
1088       ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr);
1089       ierr = PetscLogView(viewer);CHKERRQ(ierr);
1090       ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
1091     } else {
1092       viewer = PETSC_VIEWER_STDOUT_WORLD;
1093       ierr   = PetscLogView(viewer);CHKERRQ(ierr);
1094     }
1095   }
1096 
1097   mname[0] = 0;
1098 
1099   ierr = PetscOptionsGetString(NULL,"-log_summary_python",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr);
1100   if (flg1) {
1101     PetscViewer viewer;
1102     if (mname[0]) {
1103       ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr);
1104       ierr = PetscLogViewPython(viewer);CHKERRQ(ierr);
1105       ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
1106     } else {
1107       viewer = PETSC_VIEWER_STDOUT_WORLD;
1108       ierr   = PetscLogViewPython(viewer);CHKERRQ(ierr);
1109     }
1110   }
1111 
1112   ierr = PetscOptionsGetString(NULL,"-log_detailed",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr);
1113   if (flg1) {
1114     if (mname[0])  {ierr = PetscLogPrintDetailed(PETSC_COMM_WORLD,mname);CHKERRQ(ierr);}
1115     else           {ierr = PetscLogPrintDetailed(PETSC_COMM_WORLD,0);CHKERRQ(ierr);}
1116   }
1117 
1118   mname[0] = 0;
1119 
1120   ierr = PetscOptionsGetString(NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr);
1121   ierr = PetscOptionsGetString(NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr);
1122   if (flg1 || flg2) {
1123     if (mname[0]) PetscLogDump(mname);
1124     else          PetscLogDump(0);
1125   }
1126 #endif
1127 
1128   /*
1129      Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_().
1130   */
1131   ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr);
1132 
1133   ierr = PetscStackDestroy();CHKERRQ(ierr);
1134   PetscThreadLocalDestroy((PetscThreadKey)petscstack); /* Deletes pthread_key */
1135 
1136   flg1 = PETSC_FALSE;
1137   ierr = PetscOptionsGetBool(NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr);
1138   if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);}
1139   flg1 = PETSC_FALSE;
1140   ierr = PetscOptionsGetBool(NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr);
1141   if (flg1) {
1142     ierr = PetscMPIDump(stdout);CHKERRQ(ierr);
1143   }
1144   flg1 = PETSC_FALSE;
1145   flg2 = PETSC_FALSE;
1146   /* preemptive call to avoid listing this option in options table as unused */
1147   ierr = PetscOptionsHasName(NULL,"-malloc_dump",&flg1);CHKERRQ(ierr);
1148   ierr = PetscOptionsHasName(NULL,"-objects_dump",&flg1);CHKERRQ(ierr);
1149   ierr = PetscOptionsGetBool(NULL,"-options_table",&flg2,NULL);CHKERRQ(ierr);
1150 
1151   if (flg2) {
1152     PetscViewer viewer;
1153     ierr = PetscViewerASCIIGetStdout(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr);
1154     ierr = PetscOptionsView(viewer);CHKERRQ(ierr);
1155     ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
1156   }
1157 
1158   /* to prevent PETSc -options_left from warning */
1159   ierr = PetscOptionsHasName(NULL,"-nox",&flg1);CHKERRQ(ierr);
1160   ierr = PetscOptionsHasName(NULL,"-nox_warning",&flg1);CHKERRQ(ierr);
1161 
1162   if (!PetscHMPIWorker) { /* worker processes skip this because they do not usually process options */
1163     flg3 = PETSC_FALSE; /* default value is required */
1164     ierr = PetscOptionsGetBool(NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr);
1165     ierr = PetscOptionsAllUsed(&nopt);CHKERRQ(ierr);
1166     if (flg3) {
1167       if (!flg2) { /* have not yet printed the options */
1168         PetscViewer viewer;
1169         ierr = PetscViewerASCIIGetStdout(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr);
1170         ierr = PetscOptionsView(viewer);CHKERRQ(ierr);
1171         ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
1172       }
1173       if (!nopt) {
1174         ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr);
1175       } else if (nopt == 1) {
1176         ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr);
1177       } else {
1178         ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr);
1179       }
1180     }
1181 #if defined(PETSC_USE_DEBUG)
1182     if (nopt && !flg3 && !flg1) {
1183       ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr);
1184       ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr);
1185       ierr = PetscOptionsLeft();CHKERRQ(ierr);
1186     } else if (nopt && flg3) {
1187 #else
1188     if (nopt && flg3) {
1189 #endif
1190       ierr = PetscOptionsLeft();CHKERRQ(ierr);
1191     }
1192   }
1193 
1194 #if defined(PETSC_HAVE_SAWS)
1195   if (!PetscGlobalRank) {
1196     ierr = PetscStackSAWsViewOff();CHKERRQ(ierr);
1197     PetscStackCallSAWs(SAWs_Finalize,());
1198   }
1199 #endif
1200 
1201   {
1202     PetscThreadComm tcomm_world;
1203     ierr = PetscGetThreadCommWorld(&tcomm_world);CHKERRQ(ierr);
1204     /* Free global thread communicator */
1205     ierr = PetscThreadCommDestroy(&tcomm_world);CHKERRQ(ierr);
1206   }
1207 
1208   /*
1209        List all objects the user may have forgot to free
1210   */
1211   ierr = PetscOptionsHasName(NULL,"-objects_dump",&flg1);CHKERRQ(ierr);
1212   if (flg1) {
1213     MPI_Comm local_comm;
1214     char     string[64];
1215 
1216     ierr = PetscOptionsGetString(NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr);
1217     ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr);
1218     ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr);
1219     ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr);
1220     ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr);
1221     ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr);
1222   }
1223   PetscObjectsCounts    = 0;
1224   PetscObjectsMaxCounts = 0;
1225 
1226   ierr = PetscFree(PetscObjects);CHKERRQ(ierr);
1227 
1228 #if defined(PETSC_USE_LOG)
1229   ierr = PetscLogDestroy();CHKERRQ(ierr);
1230 #endif
1231 
1232   /*
1233      Destroy any packages that registered a finalize
1234   */
1235   ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr);
1236 
1237   /*
1238      Destroy all the function registration lists created
1239   */
1240   ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr);
1241 
1242   /*
1243      Print PetscFunctionLists that have not been properly freed
1244 
1245   ierr = PetscFunctionListPrintAll();CHKERRQ(ierr);
1246   */
1247 
1248   if (petsc_history) {
1249     ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr);
1250     petsc_history = 0;
1251   }
1252 
1253   ierr = PetscInfoAllow(PETSC_FALSE,NULL);CHKERRQ(ierr);
1254 
1255   {
1256     char fname[PETSC_MAX_PATH_LEN];
1257     FILE *fd;
1258     int  err;
1259 
1260     fname[0] = 0;
1261 
1262     ierr = PetscOptionsGetString(NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr);
1263     flg2 = PETSC_FALSE;
1264     ierr = PetscOptionsGetBool(NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr);
1265 #if defined(PETSC_USE_DEBUG)
1266     if (PETSC_RUNNING_ON_VALGRIND) flg2 = PETSC_FALSE;
1267 #else
1268     flg2 = PETSC_FALSE;         /* Skip reporting for optimized builds regardless of -malloc_test */
1269 #endif
1270     if (flg1 && fname[0]) {
1271       char sname[PETSC_MAX_PATH_LEN];
1272 
1273       sprintf(sname,"%s_%d",fname,rank);
1274       fd   = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname);
1275       ierr = PetscMallocDump(fd);CHKERRQ(ierr);
1276       err  = fclose(fd);
1277       if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file");
1278     } else if (flg1 || flg2) {
1279       MPI_Comm local_comm;
1280 
1281       ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr);
1282       ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr);
1283       ierr = PetscMallocDump(stdout);CHKERRQ(ierr);
1284       ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr);
1285       ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr);
1286     }
1287   }
1288 
1289   {
1290     char fname[PETSC_MAX_PATH_LEN];
1291     FILE *fd = NULL;
1292 
1293     fname[0] = 0;
1294 
1295     ierr = PetscOptionsGetString(NULL,"-malloc_log",fname,250,&flg1);CHKERRQ(ierr);
1296     ierr = PetscOptionsHasName(NULL,"-malloc_log_threshold",&flg2);CHKERRQ(ierr);
1297     if (flg1 && fname[0]) {
1298       int err;
1299 
1300       if (!rank) {
1301         fd = fopen(fname,"w");
1302         if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",fname);
1303       }
1304       ierr = PetscMallocDumpLog(fd);CHKERRQ(ierr);
1305       if (fd) {
1306         err = fclose(fd);
1307         if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file");
1308       }
1309     } else if (flg1 || flg2) {
1310       ierr = PetscMallocDumpLog(stdout);CHKERRQ(ierr);
1311     }
1312   }
1313   /* Can be destroyed only after all the options are used */
1314   ierr = PetscOptionsDestroy();CHKERRQ(ierr);
1315 
1316   PetscGlobalArgc = 0;
1317   PetscGlobalArgs = 0;
1318 
1319 #if defined(PETSC_USE_REAL___FLOAT128)
1320   ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr);
1321 #if defined(PETSC_HAVE_COMPLEX)
1322   ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr);
1323 #endif
1324   ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr);
1325   ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr);
1326 #endif
1327 
1328 #if defined(PETSC_HAVE_COMPLEX)
1329 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)
1330   ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr);
1331   ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr);
1332 #endif
1333 #endif
1334 
1335 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128)
1336   ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr);
1337 #endif
1338 
1339   ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr);
1340 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT)
1341   ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr);
1342 #endif
1343   ierr = MPI_Op_free(&PetscMaxSum_Op);CHKERRQ(ierr);
1344   ierr = MPI_Op_free(&PetscADMax_Op);CHKERRQ(ierr);
1345   ierr = MPI_Op_free(&PetscADMin_Op);CHKERRQ(ierr);
1346 
1347   /*
1348      Destroy any known inner MPI_Comm's and attributes pointing to them
1349      Note this will not destroy any new communicators the user has created.
1350 
1351      If all PETSc objects were not destroyed those left over objects will have hanging references to
1352      the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again
1353  */
1354   {
1355     PetscCommCounter *counter;
1356     PetscMPIInt      flg;
1357     MPI_Comm         icomm;
1358     union {MPI_Comm comm; void *ptr;} ucomm;
1359     ierr = MPI_Attr_get(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr);
1360     if (flg) {
1361       icomm = ucomm.comm;
1362       ierr = MPI_Attr_get(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr);
1363       if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory");
1364 
1365       ierr = MPI_Attr_delete(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr);
1366       ierr = MPI_Attr_delete(icomm,Petsc_Counter_keyval);CHKERRQ(ierr);
1367       ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr);
1368     }
1369     ierr = MPI_Attr_get(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr);
1370     if (flg) {
1371       icomm = ucomm.comm;
1372       ierr = MPI_Attr_get(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr);
1373       if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory");
1374 
1375       ierr = MPI_Attr_delete(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr);
1376       ierr = MPI_Attr_delete(icomm,Petsc_Counter_keyval);CHKERRQ(ierr);
1377       ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr);
1378     }
1379   }
1380 
1381   ierr = MPI_Keyval_free(&Petsc_Counter_keyval);CHKERRQ(ierr);
1382   ierr = MPI_Keyval_free(&Petsc_InnerComm_keyval);CHKERRQ(ierr);
1383   ierr = MPI_Keyval_free(&Petsc_OuterComm_keyval);CHKERRQ(ierr);
1384 
1385 #if defined(PETSC_HAVE_CUDA)
1386   {
1387     PetscInt p;
1388     for (p = 0; p < PetscGlobalSize; ++p) {
1389       if (p == PetscGlobalRank) cublasShutdown();
1390       ierr = MPI_Barrier(PETSC_COMM_WORLD);CHKERRQ(ierr);
1391     }
1392   }
1393 #endif
1394 
1395   if (PetscBeganMPI) {
1396 #if defined(PETSC_HAVE_MPI_FINALIZED)
1397     PetscMPIInt flag;
1398     ierr = MPI_Finalized(&flag);CHKERRQ(ierr);
1399     if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()");
1400 #endif
1401     ierr = MPI_Finalize();CHKERRQ(ierr);
1402   }
1403 /*
1404 
1405      Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because
1406    the communicator has some outstanding requests on it. Specifically if the
1407    flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See
1408    src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate()
1409    is never freed as it should be. Thus one may obtain messages of the form
1410    [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the
1411    memory was not freed.
1412 
1413 */
1414   ierr = PetscMallocClear();CHKERRQ(ierr);
1415 
1416   PetscInitializeCalled = PETSC_FALSE;
1417   PetscFinalizeCalled   = PETSC_TRUE;
1418   PetscFunctionReturn(ierr);
1419 }
1420 
1421 #if defined(PETSC_MISSING_LAPACK_lsame_)
1422 PETSC_EXTERN int lsame_(char *a,char *b)
1423 {
1424   if (*a == *b) return 1;
1425   if (*a + 32 == *b) return 1;
1426   if (*a - 32 == *b) return 1;
1427   return 0;
1428 }
1429 #endif
1430 
1431 #if defined(PETSC_MISSING_LAPACK_lsame)
1432 PETSC_EXTERN int lsame(char *a,char *b)
1433 {
1434   if (*a == *b) return 1;
1435   if (*a + 32 == *b) return 1;
1436   if (*a - 32 == *b) return 1;
1437   return 0;
1438 }
1439 #endif
1440