1 2 /* 3 This file defines the initialization of PETSc, including PetscInitialize() 4 */ 5 #include <petsc/private/petscimpl.h> /*I "petscsys.h" I*/ 6 #include <petscvalgrind.h> 7 #include <petscviewer.h> 8 9 #if defined(PETSC_USE_LOG) 10 PETSC_INTERN PetscErrorCode PetscLogInitialize(void); 11 PETSC_INTERN PetscErrorCode PetscLogFinalize(void); 12 #endif 13 14 #if defined(PETSC_SERIALIZE_FUNCTIONS) 15 PETSC_INTERN PetscFPT PetscFPTData; 16 PetscFPT PetscFPTData = 0; 17 #endif 18 19 #if defined(PETSC_HAVE_SAWS) 20 #include <petscviewersaws.h> 21 #endif 22 /* -----------------------------------------------------------------------------------------*/ 23 24 PETSC_INTERN FILE *petsc_history; 25 26 PETSC_INTERN PetscErrorCode PetscInitialize_DynamicLibraries(void); 27 PETSC_INTERN PetscErrorCode PetscFinalize_DynamicLibraries(void); 28 PETSC_INTERN PetscErrorCode PetscFunctionListPrintAll(void); 29 PETSC_INTERN PetscErrorCode PetscSequentialPhaseBegin_Private(MPI_Comm,int); 30 PETSC_INTERN PetscErrorCode PetscSequentialPhaseEnd_Private(MPI_Comm,int); 31 PETSC_INTERN PetscErrorCode PetscCloseHistoryFile(FILE**); 32 33 /* user may set this BEFORE calling PetscInitialize() */ 34 MPI_Comm PETSC_COMM_WORLD = MPI_COMM_NULL; 35 36 PetscMPIInt Petsc_Counter_keyval = MPI_KEYVAL_INVALID; 37 PetscMPIInt Petsc_InnerComm_keyval = MPI_KEYVAL_INVALID; 38 PetscMPIInt Petsc_OuterComm_keyval = MPI_KEYVAL_INVALID; 39 PetscMPIInt Petsc_ShmComm_keyval = MPI_KEYVAL_INVALID; 40 41 /* 42 Declare and set all the string names of the PETSc enums 43 */ 44 const char *const PetscBools[] = {"FALSE","TRUE","PetscBool","PETSC_",0}; 45 const char *const PetscCopyModes[] = {"COPY_VALUES","OWN_POINTER","USE_POINTER","PetscCopyMode","PETSC_",0}; 46 const char *const PetscDataTypes[] = {"INT","DOUBLE","COMPLEX","LONG","SHORT","FLOAT", 47 "CHAR","LOGICAL","ENUM","BOOL","LONGDOUBLE","OBJECT","FUNCTION","PetscDataType","PETSC_",0}; 48 49 PetscBool PetscPreLoadingUsed = PETSC_FALSE; 50 PetscBool PetscPreLoadingOn = PETSC_FALSE; 51 52 PetscInt PetscHotRegionDepth; 53 54 #if defined(PETSC_HAVE_THREADSAFETY) 55 PetscSpinlock PetscViewerASCIISpinLockOpen; 56 PetscSpinlock PetscViewerASCIISpinLockStdout; 57 PetscSpinlock PetscViewerASCIISpinLockStderr; 58 PetscSpinlock PetscCommSpinLock; 59 #endif 60 61 /* 62 Checks the options database for initializations related to the 63 PETSc components 64 */ 65 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Components(void) 66 { 67 PetscBool flg; 68 PetscErrorCode ierr; 69 70 PetscFunctionBegin; 71 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 72 if (flg) { 73 #if defined(PETSC_USE_LOG) 74 MPI_Comm comm = PETSC_COMM_WORLD; 75 ierr = (*PetscHelpPrintf)(comm,"------Additional PETSc component options--------\n");CHKERRQ(ierr); 76 ierr = (*PetscHelpPrintf)(comm," -log_exclude: <vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 77 ierr = (*PetscHelpPrintf)(comm," -info_exclude: <null,vec,mat,pc,ksp,snes,tao,ts>\n");CHKERRQ(ierr); 78 ierr = (*PetscHelpPrintf)(comm,"-----------------------------------------------\n");CHKERRQ(ierr); 79 #endif 80 } 81 PetscFunctionReturn(0); 82 } 83 84 /* 85 PetscInitializeNoPointers - Calls PetscInitialize() from C/C++ without the pointers to argc and args 86 87 Collective 88 89 Level: advanced 90 91 Notes: 92 this is called only by the PETSc Julia interface. Even though it might start MPI it sets the flag to 93 indicate that it did NOT start MPI so that the PetscFinalize() does not end MPI, thus allowing PetscInitialize() to 94 be called multiple times from Julia without the problem of trying to initialize MPI more than once. 95 96 Developer Note: Turns off PETSc signal handling to allow Julia to manage signals 97 98 .seealso: PetscInitialize(), PetscInitializeFortran(), PetscInitializeNoArguments() 99 */ 100 PetscErrorCode PetscInitializeNoPointers(int argc,char **args,const char *filename,const char *help) 101 { 102 PetscErrorCode ierr; 103 int myargc = argc; 104 char **myargs = args; 105 106 PetscFunctionBegin; 107 ierr = PetscInitialize(&myargc,&myargs,filename,help);CHKERRQ(ierr); 108 ierr = PetscPopSignalHandler();CHKERRQ(ierr); 109 PetscBeganMPI = PETSC_FALSE; 110 PetscFunctionReturn(ierr); 111 } 112 113 /* 114 Used by Julia interface to get communicator 115 */ 116 PetscErrorCode PetscGetPETSC_COMM_SELF(MPI_Comm *comm) 117 { 118 PetscFunctionBegin; 119 *comm = PETSC_COMM_SELF; 120 PetscFunctionReturn(0); 121 } 122 123 /*@C 124 PetscInitializeNoArguments - Calls PetscInitialize() from C/C++ without 125 the command line arguments. 126 127 Collective 128 129 Level: advanced 130 131 .seealso: PetscInitialize(), PetscInitializeFortran() 132 @*/ 133 PetscErrorCode PetscInitializeNoArguments(void) 134 { 135 PetscErrorCode ierr; 136 int argc = 0; 137 char **args = 0; 138 139 PetscFunctionBegin; 140 ierr = PetscInitialize(&argc,&args,NULL,NULL); 141 PetscFunctionReturn(ierr); 142 } 143 144 /*@ 145 PetscInitialized - Determine whether PETSc is initialized. 146 147 Level: beginner 148 149 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 150 @*/ 151 PetscErrorCode PetscInitialized(PetscBool *isInitialized) 152 { 153 *isInitialized = PetscInitializeCalled; 154 return 0; 155 } 156 157 /*@ 158 PetscFinalized - Determine whether PetscFinalize() has been called yet 159 160 Level: developer 161 162 .seealso: PetscInitialize(), PetscInitializeNoArguments(), PetscInitializeFortran() 163 @*/ 164 PetscErrorCode PetscFinalized(PetscBool *isFinalized) 165 { 166 *isFinalized = PetscFinalizeCalled; 167 return 0; 168 } 169 170 PETSC_INTERN PetscErrorCode PetscOptionsCheckInitial_Private(void); 171 172 /* 173 This function is the MPI reduction operation used to compute the sum of the 174 first half of the datatype and the max of the second half. 175 */ 176 MPI_Op MPIU_MAXSUM_OP = 0; 177 178 PETSC_INTERN void MPIAPI MPIU_MaxSum_Local(void *in,void *out,int *cnt,MPI_Datatype *datatype) 179 { 180 PetscInt *xin = (PetscInt*)in,*xout = (PetscInt*)out,i,count = *cnt; 181 182 PetscFunctionBegin; 183 if (*datatype != MPIU_2INT) { 184 (*PetscErrorPrintf)("Can only handle MPIU_2INT data types"); 185 MPI_Abort(MPI_COMM_WORLD,1); 186 } 187 188 for (i=0; i<count; i++) { 189 xout[2*i] = PetscMax(xout[2*i],xin[2*i]); 190 xout[2*i+1] += xin[2*i+1]; 191 } 192 PetscFunctionReturnVoid(); 193 } 194 195 /* 196 Returns the max of the first entry owned by this processor and the 197 sum of the second entry. 198 199 The reason sizes[2*i] contains lengths sizes[2*i+1] contains flag of 1 if length is nonzero 200 is so that the MPIU_MAXSUM_OP() can set TWO values, if we passed in only sizes[i] with lengths 201 there would be no place to store the both needed results. 202 */ 203 PetscErrorCode PetscMaxSum(MPI_Comm comm,const PetscInt sizes[],PetscInt *max,PetscInt *sum) 204 { 205 PetscErrorCode ierr; 206 207 PetscFunctionBegin; 208 #if defined(PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK) 209 { 210 struct {PetscInt max,sum;} work; 211 ierr = MPI_Reduce_scatter_block((void*)sizes,&work,1,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 212 *max = work.max; 213 *sum = work.sum; 214 } 215 #else 216 { 217 PetscMPIInt size,rank; 218 struct {PetscInt max,sum;} *work; 219 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 220 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 221 ierr = PetscMalloc1(size,&work);CHKERRQ(ierr); 222 ierr = MPIU_Allreduce((void*)sizes,work,size,MPIU_2INT,MPIU_MAXSUM_OP,comm);CHKERRQ(ierr); 223 *max = work[rank].max; 224 *sum = work[rank].sum; 225 ierr = PetscFree(work);CHKERRQ(ierr); 226 } 227 #endif 228 PetscFunctionReturn(0); 229 } 230 231 /* ----------------------------------------------------------------------------*/ 232 233 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 234 MPI_Op MPIU_SUM = 0; 235 236 PETSC_EXTERN void PetscSum_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 237 { 238 PetscInt i,count = *cnt; 239 240 PetscFunctionBegin; 241 if (*datatype == MPIU_REAL) { 242 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 243 for (i=0; i<count; i++) xout[i] += xin[i]; 244 } 245 #if defined(PETSC_HAVE_COMPLEX) 246 else if (*datatype == MPIU_COMPLEX) { 247 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 248 for (i=0; i<count; i++) xout[i] += xin[i]; 249 } 250 #endif 251 else { 252 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 253 MPI_Abort(MPI_COMM_WORLD,1); 254 } 255 PetscFunctionReturnVoid(); 256 } 257 #endif 258 259 #if defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 260 MPI_Op MPIU_MAX = 0; 261 MPI_Op MPIU_MIN = 0; 262 263 PETSC_EXTERN void PetscMax_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 264 { 265 PetscInt i,count = *cnt; 266 267 PetscFunctionBegin; 268 if (*datatype == MPIU_REAL) { 269 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 270 for (i=0; i<count; i++) xout[i] = PetscMax(xout[i],xin[i]); 271 } 272 #if defined(PETSC_HAVE_COMPLEX) 273 else if (*datatype == MPIU_COMPLEX) { 274 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 275 for (i=0; i<count; i++) { 276 xout[i] = PetscRealPartComplex(xout[i])<PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 277 } 278 } 279 #endif 280 else { 281 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_COMPLEX data types"); 282 MPI_Abort(MPI_COMM_WORLD,1); 283 } 284 PetscFunctionReturnVoid(); 285 } 286 287 PETSC_EXTERN void PetscMin_Local(void *in,void *out,PetscMPIInt *cnt,MPI_Datatype *datatype) 288 { 289 PetscInt i,count = *cnt; 290 291 PetscFunctionBegin; 292 if (*datatype == MPIU_REAL) { 293 PetscReal *xin = (PetscReal*)in,*xout = (PetscReal*)out; 294 for (i=0; i<count; i++) xout[i] = PetscMin(xout[i],xin[i]); 295 } 296 #if defined(PETSC_HAVE_COMPLEX) 297 else if (*datatype == MPIU_COMPLEX) { 298 PetscComplex *xin = (PetscComplex*)in,*xout = (PetscComplex*)out; 299 for (i=0; i<count; i++) { 300 xout[i] = PetscRealPartComplex(xout[i])>PetscRealPartComplex(xin[i]) ? xin[i] : xout[i]; 301 } 302 } 303 #endif 304 else { 305 (*PetscErrorPrintf)("Can only handle MPIU_REAL or MPIU_SCALAR data (i.e. double or complex) types"); 306 MPI_Abort(MPI_COMM_WORLD,1); 307 } 308 PetscFunctionReturnVoid(); 309 } 310 #endif 311 312 /* 313 Private routine to delete internal tag/name counter storage when a communicator is freed. 314 315 This is called by MPI, not by users. This is called by MPI_Comm_free() when the communicator that has this data as an attribute is freed. 316 317 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 318 319 */ 320 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelCounter(MPI_Comm comm,PetscMPIInt keyval,void *count_val,void *extra_state) 321 { 322 PetscErrorCode ierr; 323 324 PetscFunctionBegin; 325 ierr = PetscInfo1(0,"Deleting counter data in an MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 326 ierr = PetscFree(count_val);CHKERRMPI(ierr); 327 PetscFunctionReturn(MPI_SUCCESS); 328 } 329 330 /* 331 This is invoked on the outer comm as a result of either PetscCommDestroy() (via MPI_Comm_delete_attr) or when the user 332 calls MPI_Comm_free(). 333 334 This is the only entry point for breaking the links between inner and outer comms. 335 336 This is called by MPI, not by users. This is called when MPI_Comm_free() is called on the communicator. 337 338 Note: this is declared extern "C" because it is passed to MPI_Comm_create_keyval() 339 340 */ 341 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Outer(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 342 { 343 PetscErrorCode ierr; 344 PetscMPIInt flg; 345 union {MPI_Comm comm; void *ptr;} icomm,ocomm; 346 347 PetscFunctionBegin; 348 if (keyval != Petsc_InnerComm_keyval) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Unexpected keyval"); 349 icomm.ptr = attr_val; 350 351 ierr = MPI_Comm_get_attr(icomm.comm,Petsc_OuterComm_keyval,&ocomm,&flg);CHKERRMPI(ierr); 352 if (!flg) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected reference to outer comm"); 353 if (ocomm.comm != comm) SETERRMPI(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm has reference to non-matching outer comm"); 354 ierr = MPI_Comm_delete_attr(icomm.comm,Petsc_OuterComm_keyval);CHKERRMPI(ierr); 355 ierr = PetscInfo1(0,"User MPI_Comm %ld is being freed after removing reference from inner PETSc comm to this outer comm\n",(long)comm);CHKERRMPI(ierr); 356 PetscFunctionReturn(MPI_SUCCESS); 357 } 358 359 /* 360 * This is invoked on the inner comm when Petsc_DelComm_Outer calls MPI_Comm_delete_attr. It should not be reached any other way. 361 */ 362 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Inner(MPI_Comm comm,PetscMPIInt keyval,void *attr_val,void *extra_state) 363 { 364 PetscErrorCode ierr; 365 366 PetscFunctionBegin; 367 ierr = PetscInfo1(0,"Removing reference to PETSc communicator embedded in a user MPI_Comm %ld\n",(long)comm);CHKERRMPI(ierr); 368 PetscFunctionReturn(MPI_SUCCESS); 369 } 370 371 PETSC_EXTERN PetscMPIInt MPIAPI Petsc_DelComm_Shm(MPI_Comm,PetscMPIInt,void *,void *); 372 373 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 374 #if !defined(PETSC_WORDS_BIGENDIAN) 375 PETSC_EXTERN PetscMPIInt PetscDataRep_extent_fn(MPI_Datatype,MPI_Aint*,void*); 376 PETSC_EXTERN PetscMPIInt PetscDataRep_read_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 377 PETSC_EXTERN PetscMPIInt PetscDataRep_write_conv_fn(void*, MPI_Datatype,PetscMPIInt,void*,MPI_Offset,void*); 378 #endif 379 #endif 380 381 PetscMPIInt PETSC_MPI_ERROR_CLASS,PETSC_MPI_ERROR_CODE; 382 383 PETSC_INTERN int PetscGlobalArgc; 384 PETSC_INTERN char **PetscGlobalArgs; 385 int PetscGlobalArgc = 0; 386 char **PetscGlobalArgs = 0; 387 PetscSegBuffer PetscCitationsList; 388 389 PetscErrorCode PetscCitationsInitialize(void) 390 { 391 PetscErrorCode ierr; 392 393 PetscFunctionBegin; 394 ierr = PetscSegBufferCreate(1,10000,&PetscCitationsList);CHKERRQ(ierr); 395 ierr = PetscCitationsRegister("@TechReport{petsc-user-ref,\n Author = {Satish Balay and Shrirang Abhyankar and Mark F. Adams and Jed Brown and Peter Brune\n and Kris Buschelman and Lisandro Dalcin and Victor Eijkhout and William D. Gropp\n and Dinesh Kaushik and Matthew G. Knepley and Dave A. May and Lois Curfman McInnes\n and Richard Tran Mills and Todd Munson and Karl Rupp and Patrick Sanan\n and Barry F. Smith and Stefano Zampini and Hong Zhang and Hong Zhang},\n Title = {{PETS}c Users Manual},\n Number = {ANL-95/11 - Revision 3.9},\n Institution = {Argonne National Laboratory},\n Year = {2018}\n}\n",NULL);CHKERRQ(ierr); 396 ierr = PetscCitationsRegister("@InProceedings{petsc-efficient,\n Author = {Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith},\n Title = {Efficient Management of Parallelism in Object Oriented Numerical Software Libraries},\n Booktitle = {Modern Software Tools in Scientific Computing},\n Editor = {E. Arge and A. M. Bruaset and H. P. Langtangen},\n Pages = {163--202},\n Publisher = {Birkh{\\\"{a}}user Press},\n Year = {1997}\n}\n",NULL);CHKERRQ(ierr); 397 PetscFunctionReturn(0); 398 } 399 400 static char programname[PETSC_MAX_PATH_LEN] = ""; /* HP includes entire path in name */ 401 402 PetscErrorCode PetscSetProgramName(const char name[]) 403 { 404 PetscErrorCode ierr; 405 406 PetscFunctionBegin; 407 ierr = PetscStrncpy(programname,name,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 408 PetscFunctionReturn(0); 409 } 410 411 /*@C 412 PetscGetProgramName - Gets the name of the running program. 413 414 Not Collective 415 416 Input Parameter: 417 . len - length of the string name 418 419 Output Parameter: 420 . name - the name of the running program 421 422 Level: advanced 423 424 Notes: 425 The name of the program is copied into the user-provided character 426 array of length len. On some machines the program name includes 427 its entire path, so one should generally set len >= PETSC_MAX_PATH_LEN. 428 @*/ 429 PetscErrorCode PetscGetProgramName(char name[],size_t len) 430 { 431 PetscErrorCode ierr; 432 433 PetscFunctionBegin; 434 ierr = PetscStrncpy(name,programname,len);CHKERRQ(ierr); 435 PetscFunctionReturn(0); 436 } 437 438 /*@C 439 PetscGetArgs - Allows you to access the raw command line arguments anywhere 440 after PetscInitialize() is called but before PetscFinalize(). 441 442 Not Collective 443 444 Output Parameters: 445 + argc - count of number of command line arguments 446 - args - the command line arguments 447 448 Level: intermediate 449 450 Notes: 451 This is usually used to pass the command line arguments into other libraries 452 that are called internally deep in PETSc or the application. 453 454 The first argument contains the program name as is normal for C arguments. 455 456 Concepts: command line arguments 457 458 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArguments() 459 460 @*/ 461 PetscErrorCode PetscGetArgs(int *argc,char ***args) 462 { 463 PetscFunctionBegin; 464 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 465 *argc = PetscGlobalArgc; 466 *args = PetscGlobalArgs; 467 PetscFunctionReturn(0); 468 } 469 470 /*@C 471 PetscGetArguments - Allows you to access the command line arguments anywhere 472 after PetscInitialize() is called but before PetscFinalize(). 473 474 Not Collective 475 476 Output Parameters: 477 . args - the command line arguments 478 479 Level: intermediate 480 481 Notes: 482 This does NOT start with the program name and IS null terminated (final arg is void) 483 484 Concepts: command line arguments 485 486 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscFreeArguments() 487 488 @*/ 489 PetscErrorCode PetscGetArguments(char ***args) 490 { 491 PetscInt i,argc = PetscGlobalArgc; 492 PetscErrorCode ierr; 493 494 PetscFunctionBegin; 495 if (!PetscInitializeCalled && PetscFinalizeCalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"You must call after PetscInitialize() but before PetscFinalize()"); 496 if (!argc) {*args = NULL; PetscFunctionReturn(0);} 497 ierr = PetscMalloc1(argc,args);CHKERRQ(ierr); 498 for (i=0; i<argc-1; i++) { 499 ierr = PetscStrallocpy(PetscGlobalArgs[i+1],&(*args)[i]);CHKERRQ(ierr); 500 } 501 (*args)[argc-1] = NULL; 502 PetscFunctionReturn(0); 503 } 504 505 /*@C 506 PetscFreeArguments - Frees the memory obtained with PetscGetArguments() 507 508 Not Collective 509 510 Output Parameters: 511 . args - the command line arguments 512 513 Level: intermediate 514 515 Concepts: command line arguments 516 517 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscGetArguments() 518 519 @*/ 520 PetscErrorCode PetscFreeArguments(char **args) 521 { 522 PetscInt i = 0; 523 PetscErrorCode ierr; 524 525 PetscFunctionBegin; 526 if (!args) PetscFunctionReturn(0); 527 while (args[i]) { 528 ierr = PetscFree(args[i]);CHKERRQ(ierr); 529 i++; 530 } 531 ierr = PetscFree(args);CHKERRQ(ierr); 532 PetscFunctionReturn(0); 533 } 534 535 #if defined(PETSC_HAVE_SAWS) 536 #include <petscconfiginfo.h> 537 538 PETSC_INTERN PetscErrorCode PetscInitializeSAWs(const char help[]) 539 { 540 if (!PetscGlobalRank) { 541 char cert[PETSC_MAX_PATH_LEN],root[PETSC_MAX_PATH_LEN],*intro,programname[64],*appline,*options,version[64]; 542 int port; 543 PetscBool flg,rootlocal = PETSC_FALSE,flg2,selectport = PETSC_FALSE; 544 size_t applinelen,introlen; 545 PetscErrorCode ierr; 546 char sawsurl[256]; 547 548 ierr = PetscOptionsHasName(NULL,NULL,"-saws_log",&flg);CHKERRQ(ierr); 549 if (flg) { 550 char sawslog[PETSC_MAX_PATH_LEN]; 551 552 ierr = PetscOptionsGetString(NULL,NULL,"-saws_log",sawslog,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 553 if (sawslog[0]) { 554 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(sawslog)); 555 } else { 556 PetscStackCallSAWs(SAWs_Set_Use_Logfile,(NULL)); 557 } 558 } 559 ierr = PetscOptionsGetString(NULL,NULL,"-saws_https",cert,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 560 if (flg) { 561 PetscStackCallSAWs(SAWs_Set_Use_HTTPS,(cert)); 562 } 563 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select",&selectport,NULL);CHKERRQ(ierr); 564 if (selectport) { 565 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 566 PetscStackCallSAWs(SAWs_Set_Port,(port)); 567 } else { 568 ierr = PetscOptionsGetInt(NULL,NULL,"-saws_port",&port,&flg);CHKERRQ(ierr); 569 if (flg) { 570 PetscStackCallSAWs(SAWs_Set_Port,(port)); 571 } 572 } 573 ierr = PetscOptionsGetString(NULL,NULL,"-saws_root",root,PETSC_MAX_PATH_LEN,&flg);CHKERRQ(ierr); 574 if (flg) { 575 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 576 ierr = PetscStrcmp(root,".",&rootlocal);CHKERRQ(ierr); 577 } else { 578 ierr = PetscOptionsHasName(NULL,NULL,"-saws_options",&flg);CHKERRQ(ierr); 579 if (flg) { 580 ierr = PetscStrreplace(PETSC_COMM_WORLD,"${PETSC_DIR}/share/petsc/saws",root,PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 581 PetscStackCallSAWs(SAWs_Set_Document_Root,(root));CHKERRQ(ierr); 582 } 583 } 584 ierr = PetscOptionsHasName(NULL,NULL,"-saws_local",&flg2);CHKERRQ(ierr); 585 if (flg2) { 586 char jsdir[PETSC_MAX_PATH_LEN]; 587 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"-saws_local option requires -saws_root option"); 588 ierr = PetscSNPrintf(jsdir,PETSC_MAX_PATH_LEN,"%s/js",root);CHKERRQ(ierr); 589 ierr = PetscTestDirectory(jsdir,'r',&flg);CHKERRQ(ierr); 590 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_READ,"-saws_local option requires js directory in root directory"); 591 PetscStackCallSAWs(SAWs_Push_Local_Header,());CHKERRQ(ierr); 592 } 593 ierr = PetscGetProgramName(programname,64);CHKERRQ(ierr); 594 ierr = PetscStrlen(help,&applinelen);CHKERRQ(ierr); 595 introlen = 4096 + applinelen; 596 applinelen += 1024; 597 ierr = PetscMalloc(applinelen,&appline);CHKERRQ(ierr); 598 ierr = PetscMalloc(introlen,&intro);CHKERRQ(ierr); 599 600 if (rootlocal) { 601 ierr = PetscSNPrintf(appline,applinelen,"%s.c.html",programname);CHKERRQ(ierr); 602 ierr = PetscTestFile(appline,'r',&rootlocal);CHKERRQ(ierr); 603 } 604 ierr = PetscOptionsGetAll(NULL,&options);CHKERRQ(ierr); 605 if (rootlocal && help) { 606 ierr = PetscSNPrintf(appline,applinelen,"<center> Running <a href=\"%s.c.html\">%s</a> %s</center><br><center><pre>%s</pre></center><br>\n",programname,programname,options,help); 607 } else if (help) { 608 ierr = PetscSNPrintf(appline,applinelen,"<center>Running %s %s</center><br><center><pre>%s</pre></center><br>",programname,options,help); 609 } else { 610 ierr = PetscSNPrintf(appline,applinelen,"<center> Running %s %s</center><br>\n",programname,options); 611 } 612 ierr = PetscFree(options);CHKERRQ(ierr); 613 ierr = PetscGetVersion(version,sizeof(version));CHKERRQ(ierr); 614 ierr = PetscSNPrintf(intro,introlen,"<body>\n" 615 "<center><h2> <a href=\"http://www.mcs.anl.gov/petsc\">PETSc</a> Application Web server powered by <a href=\"https://bitbucket.org/saws/saws\">SAWs</a> </h2></center>\n" 616 "<center>This is the default PETSc application dashboard, from it you can access any published PETSc objects or logging data</center><br><center>%s configured with %s</center><br>\n" 617 "%s",version,petscconfigureoptions,appline); 618 PetscStackCallSAWs(SAWs_Push_Body,("index.html",0,intro)); 619 ierr = PetscFree(intro);CHKERRQ(ierr); 620 ierr = PetscFree(appline);CHKERRQ(ierr); 621 if (selectport) { 622 PetscBool silent; 623 624 ierr = SAWs_Initialize(); 625 /* another process may have grabbed the port so keep trying */ 626 while (ierr) { 627 PetscStackCallSAWs(SAWs_Get_Available_Port,(&port)); 628 PetscStackCallSAWs(SAWs_Set_Port,(port)); 629 ierr = SAWs_Initialize(); 630 } 631 632 ierr = PetscOptionsGetBool(NULL,NULL,"-saws_port_auto_select_silent",&silent,NULL);CHKERRQ(ierr); 633 if (!silent) { 634 PetscStackCallSAWs(SAWs_Get_FullURL,(sizeof(sawsurl),sawsurl)); 635 ierr = PetscPrintf(PETSC_COMM_WORLD,"Point your browser to %s for SAWs\n",sawsurl);CHKERRQ(ierr); 636 } 637 } else { 638 PetscStackCallSAWs(SAWs_Initialize,()); 639 } 640 ierr = PetscCitationsRegister("@TechReport{ saws,\n" 641 " Author = {Matt Otten and Jed Brown and Barry Smith},\n" 642 " Title = {Scientific Application Web Server (SAWs) Users Manual},\n" 643 " Institution = {Argonne National Laboratory},\n" 644 " Year = 2013\n}\n",NULL);CHKERRQ(ierr); 645 } 646 PetscFunctionReturn(0); 647 } 648 #endif 649 650 #if defined(PETSC_HAVE_ADIOS) 651 #include <adios.h> 652 #include <adios_read.h> 653 int64_t Petsc_adios_group; 654 #endif 655 #if defined(PETSC_HAVE_ADIOS2) 656 #include <adios2_c.h> 657 #endif 658 659 /*@C 660 PetscInitialize - Initializes the PETSc database and MPI. 661 PetscInitialize() calls MPI_Init() if that has yet to be called, 662 so this routine should always be called near the beginning of 663 your program -- usually the very first line! 664 665 Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set 666 667 Input Parameters: 668 + argc - count of number of command line arguments 669 . args - the command line arguments 670 . file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use NULL to not check for 671 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 672 - help - [optional] Help message to print, use NULL for no message 673 674 If you wish PETSc code to run ONLY on a subcommunicator of MPI_COMM_WORLD, create that 675 communicator first and assign it to PETSC_COMM_WORLD BEFORE calling PetscInitialize(). Thus if you are running a 676 four process job and two processes will run PETSc and have PetscInitialize() and PetscFinalize() and two process will not, 677 then do this. If ALL processes in the job are using PetscInitialize() and PetscFinalize() then you don't need to do this, even 678 if different subcommunicators of the job are doing different things with PETSc. 679 680 Options Database Keys: 681 + -help [intro] - prints help method for each option; if intro is given the program stops after printing the introductory help message 682 . -start_in_debugger [noxterm,dbx,xdb,gdb,...] - Starts program in debugger 683 . -on_error_attach_debugger [noxterm,dbx,xdb,gdb,...] - Starts debugger when error detected 684 . -on_error_emacs <machinename> causes emacsclient to jump to error file 685 . -on_error_abort calls abort() when error detected (no traceback) 686 . -on_error_mpiabort calls MPI_abort() when error detected 687 . -error_output_stderr prints error messages to stderr instead of the default stdout 688 . -error_output_none does not print the error messages (but handles errors in the same way as if this was not called) 689 . -debugger_nodes [node1,node2,...] - Indicates nodes to start in debugger 690 . -debugger_pause [sleeptime] (in seconds) - Pauses debugger 691 . -stop_for_debugger - Print message on how to attach debugger manually to 692 process and wait (-debugger_pause) seconds for attachment 693 . -malloc - Indicates use of PETSc error-checking malloc (on by default for debug version of libraries) 694 . -malloc no - Indicates not to use error-checking malloc 695 . -malloc_debug - check for memory corruption at EVERY malloc or free 696 . -malloc_dump - prints a list of all unfreed memory at the end of the run 697 . -malloc_test - like -malloc_dump -malloc_debug, but only active for debugging builds 698 . -fp_trap - Stops on floating point exceptions (Note that on the 699 IBM RS6000 this slows code by at least a factor of 10.) 700 . -no_signal_handler - Indicates not to trap error signals 701 . -shared_tmp - indicates /tmp directory is shared by all processors 702 . -not_shared_tmp - each processor has own /tmp 703 . -tmp - alternative name of /tmp directory 704 . -get_total_flops - returns total flops done by all processors 705 - -memory_view - Print memory usage at end of run 706 707 Options Database Keys for Profiling: 708 See Users-Manual: ch_profiling for details. 709 + -info <optional filename> - Prints verbose information to the screen 710 . -info_exclude <null,vec,mat,pc,ksp,snes,ts> - Excludes some of the verbose messages 711 . -log_sync - Enable barrier synchronization for all events. This option is useful to debug imbalance within each event, 712 however it slows things down and gives a distorted view of the overall runtime. 713 . -log_trace [filename] - Print traces of all PETSc calls to the screen (useful to determine where a program 714 hangs without running in the debugger). See PetscLogTraceBegin(). 715 . -log_view [:filename:format] - Prints summary of flop and timing information to screen or file, see PetscLogView(). 716 . -log_summary [filename] - (Deprecated, use -log_view) Prints summary of flop and timing information to screen. If the filename is specified the 717 summary is written to the file. See PetscLogView(). 718 . -log_exclude: <vec,mat,pc,ksp,snes> - excludes subset of object classes from logging 719 . -log_all [filename] - Logs extensive profiling information See PetscLogDump(). 720 . -log [filename] - Logs basic profiline information See PetscLogDump(). 721 . -log_mpe [filename] - Creates a logfile viewable by the utility Jumpshot (in MPICH distribution) 722 . -viewfromoptions on,off - Enable or disable XXXSetFromOptions() calls, for applications with many small solves turn this off 723 - -check_pointer_intensity 0,1,2 - if pointers are checked for validity (debug version only), using 0 will result in faster code 724 725 Only one of -log_trace, -log_view, -log_view, -log_all, -log, or -log_mpe may be used at a time 726 727 Options Database Keys for SAWs: 728 + -saws_port <portnumber> - port number to publish SAWs data, default is 8080 729 . -saws_port_auto_select - have SAWs select a new unique port number where it publishes the data, the URL is printed to the screen 730 this is useful when you are running many jobs that utilize SAWs at the same time 731 . -saws_log <filename> - save a log of all SAWs communication 732 . -saws_https <certificate file> - have SAWs use HTTPS instead of HTTP 733 - -saws_root <directory> - allow SAWs to have access to the given directory to search for requested resources and files 734 735 Environmental Variables: 736 + PETSC_TMP - alternative tmp directory 737 . PETSC_SHARED_TMP - tmp is shared by all processes 738 . PETSC_NOT_SHARED_TMP - each process has its own private tmp 739 . PETSC_VIEWER_SOCKET_PORT - socket number to use for socket viewer 740 - PETSC_VIEWER_SOCKET_MACHINE - machine to use for socket viewer to connect to 741 742 743 Level: beginner 744 745 Notes: 746 If for some reason you must call MPI_Init() separately, call 747 it before PetscInitialize(). 748 749 Fortran Version: 750 In Fortran this routine has the format 751 $ call PetscInitialize(file,ierr) 752 753 + ierr - error return code 754 - file - [optional] PETSc database file, also checks ~username/.petscrc and .petscrc use PETSC_NULL_CHARACTER to not check for 755 code specific file. Use -skip_petscrc in the code specific file to skip the .petscrc files 756 757 Important Fortran Note: 758 In Fortran, you MUST use PETSC_NULL_CHARACTER to indicate a 759 null character string; you CANNOT just use NULL as 760 in the C version. See Users-Manual: ch_fortran for details. 761 762 If your main program is C but you call Fortran code that also uses PETSc you need to call PetscInitializeFortran() soon after 763 calling PetscInitialize(). 764 765 Concepts: initializing PETSc 766 767 .seealso: PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscInitializeNoArguments() 768 769 @*/ 770 PetscErrorCode PetscInitialize(int *argc,char ***args,const char file[],const char help[]) 771 { 772 PetscErrorCode ierr; 773 PetscMPIInt flag, size; 774 PetscBool flg = PETSC_TRUE; 775 char hostname[256]; 776 777 PetscFunctionBegin; 778 if (PetscInitializeCalled) PetscFunctionReturn(0); 779 /* 780 The checking over compatible runtime libraries is complicated by the MPI ABI initiative 781 https://wiki.mpich.org/mpich/index.php/ABI_Compatibility_Initiative which started with 782 MPICH v3.1 (Released Feburary 2014) 783 IBM MPI v2.1 (December 2014) 784 Intel® MPI Library v5.0 (2014) 785 Cray MPT v7.0.0 (June 2014) 786 As of July 31, 2017 the ABI number still appears to be 12, that is all of the versions 787 listed above and since that time are compatible. 788 789 Unfortunately the MPI ABI initiative has not defined a way to determine the ABI number 790 at compile time or runtime. Thus we will need to systematically track the allowed versions 791 and how they are represented in the mpi.h and MPI_Get_library_version() output in order 792 to perform the checking. 793 794 Currently we only check for pre MPI ABI versions (and packages that do not follow the MPI ABI). 795 796 Questions: 797 798 Should the checks for ABI incompatibility be only on the major version number below? 799 Presumably the output to stderr will be removed before a release. 800 */ 801 802 #if defined(PETSC_HAVE_MPI_GET_LIBRARY_VERSION) 803 { 804 char mpilibraryversion[MPI_MAX_LIBRARY_VERSION_STRING]; 805 PetscMPIInt mpilibraryversionlength; 806 ierr = MPI_Get_library_version(mpilibraryversion,&mpilibraryversionlength);if (ierr) return ierr; 807 /* check for MPICH versions before MPI ABI initiative */ 808 #if defined(MPICH_VERSION) 809 #if MPICH_NUMVERSION < 30100000 810 { 811 char *ver,*lf; 812 flg = PETSC_FALSE; 813 ierr = PetscStrstr(mpilibraryversion,"MPICH Version:",&ver);if (ierr) return ierr; 814 if (ver) { 815 ierr = PetscStrchr(ver,'\n',&lf);if (ierr) return ierr; 816 if (lf) { 817 *lf = 0; 818 ierr = PetscStrendswith(ver,MPICH_VERSION,&flg);if (ierr) return ierr; 819 } 820 } 821 if (!flg) { 822 fprintf(stderr,"PETSc Error --- MPICH library version \n%s does not match what PETSc was compiled with %s, aborting\n",mpilibraryversion,MPICH_VERSION); 823 return PETSC_ERR_MPI_LIB_INCOMP; 824 } 825 } 826 #endif 827 /* check for OpenMPI version, it is not part of the MPI ABI initiative (is it part of another initiative that needs to be handled?) */ 828 #elif defined(OMPI_MAJOR_VERSION) 829 { 830 char *ver,bs[32],*bsf; 831 flg = PETSC_FALSE; 832 ierr = PetscStrstr(mpilibraryversion,"Open MPI",&ver);if (ierr) return ierr; 833 if (ver) { 834 PetscSNPrintf(bs,32,"v%d.%d",OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 835 ierr = PetscStrstr(ver,bs,&bsf);if (ierr) return ierr; 836 if (bsf) flg = PETSC_TRUE; 837 } 838 if (!flg) { 839 fprintf(stderr,"PETSc Error --- Open MPI library version \n%s does not match what PETSc was compiled with %d.%d, aborting\n",mpilibraryversion,OMPI_MAJOR_VERSION,OMPI_MINOR_VERSION); 840 return PETSC_ERR_MPI_LIB_INCOMP; 841 } 842 } 843 #endif 844 } 845 #endif 846 847 848 /* these must be initialized in a routine, not as a constant declaration*/ 849 PETSC_STDOUT = stdout; 850 PETSC_STDERR = stderr; 851 852 /* on Windows - set printf to default to printing 2 digit exponents */ 853 #if defined(PETSC_HAVE__SET_OUTPUT_FORMAT) 854 _set_output_format(_TWO_DIGIT_EXPONENT); 855 #endif 856 857 ierr = PetscOptionsCreateDefault();CHKERRQ(ierr); 858 859 /* 860 We initialize the program name here (before MPI_Init()) because MPICH has a bug in 861 it that it sets args[0] on all processors to be args[0] on the first processor. 862 */ 863 if (argc && *argc) { 864 ierr = PetscSetProgramName(**args);CHKERRQ(ierr); 865 } else { 866 ierr = PetscSetProgramName("Unknown Name");CHKERRQ(ierr); 867 } 868 869 ierr = MPI_Initialized(&flag);CHKERRQ(ierr); 870 if (!flag) { 871 if (PETSC_COMM_WORLD != MPI_COMM_NULL) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You cannot set PETSC_COMM_WORLD if you have not initialized MPI first"); 872 #if defined(PETSC_HAVE_MPI_INIT_THREAD) 873 { 874 PetscMPIInt provided; 875 ierr = MPI_Init_thread(argc,args,MPI_THREAD_FUNNELED,&provided);CHKERRQ(ierr); 876 } 877 #else 878 ierr = MPI_Init(argc,args);CHKERRQ(ierr); 879 #endif 880 PetscBeganMPI = PETSC_TRUE; 881 } 882 if (argc && args) { 883 PetscGlobalArgc = *argc; 884 PetscGlobalArgs = *args; 885 } 886 PetscFinalizeCalled = PETSC_FALSE; 887 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 888 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 889 ierr = PetscSpinlockCreate(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 890 ierr = PetscSpinlockCreate(&PetscCommSpinLock);CHKERRQ(ierr); 891 892 if (PETSC_COMM_WORLD == MPI_COMM_NULL) PETSC_COMM_WORLD = MPI_COMM_WORLD; 893 ierr = MPI_Comm_set_errhandler(PETSC_COMM_WORLD,MPI_ERRORS_RETURN);CHKERRQ(ierr); 894 895 ierr = MPI_Add_error_class(&PETSC_MPI_ERROR_CLASS);CHKERRQ(ierr); 896 ierr = MPI_Add_error_code(PETSC_MPI_ERROR_CLASS,&PETSC_MPI_ERROR_CODE);CHKERRQ(ierr); 897 898 /* Done after init due to a bug in MPICH-GM? */ 899 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 900 901 ierr = MPI_Comm_rank(MPI_COMM_WORLD,&PetscGlobalRank);CHKERRQ(ierr); 902 ierr = MPI_Comm_size(MPI_COMM_WORLD,&PetscGlobalSize);CHKERRQ(ierr); 903 904 MPIU_BOOL = MPI_INT; 905 MPIU_ENUM = MPI_INT; 906 907 /* 908 Initialized the global complex variable; this is because with 909 shared libraries the constructors for global variables 910 are not called; at least on IRIX. 911 */ 912 #if defined(PETSC_HAVE_COMPLEX) 913 { 914 #if defined(PETSC_CLANGUAGE_CXX) && !defined(PETSC_USE_REAL___FLOAT128) 915 PetscComplex ic(0.0,1.0); 916 PETSC_i = ic; 917 #else 918 PETSC_i = _Complex_I; 919 #endif 920 } 921 922 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 923 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 924 ierr = MPI_Type_commit(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 925 ierr = MPI_Type_contiguous(2,MPI_FLOAT,&MPIU_C_COMPLEX);CHKERRQ(ierr); 926 ierr = MPI_Type_commit(&MPIU_C_COMPLEX);CHKERRQ(ierr); 927 #endif 928 #endif /* PETSC_HAVE_COMPLEX */ 929 930 /* 931 Create the PETSc MPI reduction operator that sums of the first 932 half of the entries and maxes the second half. 933 */ 934 ierr = MPI_Op_create(MPIU_MaxSum_Local,1,&MPIU_MAXSUM_OP);CHKERRQ(ierr); 935 936 #if defined(PETSC_USE_REAL___FLOAT128) 937 ierr = MPI_Type_contiguous(2,MPI_DOUBLE,&MPIU___FLOAT128);CHKERRQ(ierr); 938 ierr = MPI_Type_commit(&MPIU___FLOAT128);CHKERRQ(ierr); 939 #if defined(PETSC_HAVE_COMPLEX) 940 ierr = MPI_Type_contiguous(4,MPI_DOUBLE,&MPIU___COMPLEX128);CHKERRQ(ierr); 941 ierr = MPI_Type_commit(&MPIU___COMPLEX128);CHKERRQ(ierr); 942 #endif 943 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 944 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 945 #elif defined(PETSC_USE_REAL___FP16) 946 ierr = MPI_Type_contiguous(2,MPI_CHAR,&MPIU___FP16);CHKERRQ(ierr); 947 ierr = MPI_Type_commit(&MPIU___FP16);CHKERRQ(ierr); 948 ierr = MPI_Op_create(PetscMax_Local,1,&MPIU_MAX);CHKERRQ(ierr); 949 ierr = MPI_Op_create(PetscMin_Local,1,&MPIU_MIN);CHKERRQ(ierr); 950 #endif 951 952 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 953 ierr = MPI_Op_create(PetscSum_Local,1,&MPIU_SUM);CHKERRQ(ierr); 954 #endif 955 956 ierr = MPI_Type_contiguous(2,MPIU_SCALAR,&MPIU_2SCALAR);CHKERRQ(ierr); 957 ierr = MPI_Type_commit(&MPIU_2SCALAR);CHKERRQ(ierr); 958 959 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT) 960 ierr = MPI_Type_contiguous(2,MPIU_INT,&MPIU_2INT);CHKERRQ(ierr); 961 ierr = MPI_Type_commit(&MPIU_2INT);CHKERRQ(ierr); 962 #endif 963 964 965 /* 966 Attributes to be set on PETSc communicators 967 */ 968 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelCounter,&Petsc_Counter_keyval,(void*)0);CHKERRQ(ierr); 969 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Outer,&Petsc_InnerComm_keyval,(void*)0);CHKERRQ(ierr); 970 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Inner,&Petsc_OuterComm_keyval,(void*)0);CHKERRQ(ierr); 971 ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,Petsc_DelComm_Shm,&Petsc_ShmComm_keyval,(void*)0);CHKERRQ(ierr); 972 973 /* 974 Build the options database 975 */ 976 ierr = PetscOptionsInsert(NULL,argc,args,file);CHKERRQ(ierr); 977 978 /* call a second time so it can look in the options database */ 979 ierr = PetscErrorPrintfInitialize();CHKERRQ(ierr); 980 981 /* 982 Print main application help message 983 */ 984 ierr = PetscOptionsHasHelp(NULL,&flg);CHKERRQ(ierr); 985 if (help && flg) { 986 ierr = PetscPrintf(PETSC_COMM_WORLD,help);CHKERRQ(ierr); 987 } 988 ierr = PetscOptionsCheckInitial_Private();CHKERRQ(ierr); 989 990 ierr = PetscCitationsInitialize();CHKERRQ(ierr); 991 992 #if defined(PETSC_HAVE_SAWS) 993 ierr = PetscInitializeSAWs(help);CHKERRQ(ierr); 994 #endif 995 996 /* Creates the logging data structures; this is enabled even if logging is not turned on */ 997 #if defined(PETSC_USE_LOG) 998 ierr = PetscLogInitialize();CHKERRQ(ierr); 999 #endif 1000 1001 /* 1002 Load the dynamic libraries (on machines that support them), this registers all 1003 the solvers etc. (On non-dynamic machines this initializes the PetscDraw and PetscViewer classes) 1004 */ 1005 ierr = PetscInitialize_DynamicLibraries();CHKERRQ(ierr); 1006 1007 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr); 1008 ierr = PetscInfo1(0,"PETSc successfully started: number of processors = %d\n",size);CHKERRQ(ierr); 1009 ierr = PetscGetHostName(hostname,256);CHKERRQ(ierr); 1010 ierr = PetscInfo1(0,"Running on machine: %s\n",hostname);CHKERRQ(ierr); 1011 1012 ierr = PetscOptionsCheckInitial_Components();CHKERRQ(ierr); 1013 /* Check the options database for options related to the options database itself */ 1014 ierr = PetscOptionsSetFromOptions(NULL);CHKERRQ(ierr); 1015 1016 #if defined(PETSC_USE_PETSC_MPI_EXTERNAL32) 1017 /* 1018 Tell MPI about our own data representation converter, this would/should be used if extern32 is not supported by the MPI 1019 1020 Currently not used because it is not supported by MPICH. 1021 */ 1022 #if !defined(PETSC_WORDS_BIGENDIAN) 1023 ierr = MPI_Register_datarep((char*)"petsc",PetscDataRep_read_conv_fn,PetscDataRep_write_conv_fn,PetscDataRep_extent_fn,NULL);CHKERRQ(ierr); 1024 #endif 1025 #endif 1026 1027 /* 1028 Setup building of stack frames for all function calls 1029 */ 1030 #if defined(PETSC_USE_DEBUG) && !defined(PETSC_HAVE_THREADSAFETY) 1031 ierr = PetscStackCreate();CHKERRQ(ierr); 1032 #endif 1033 1034 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1035 ierr = PetscFPTCreate(10000);CHKERRQ(ierr); 1036 #endif 1037 1038 #if defined(PETSC_HAVE_HWLOC) 1039 { 1040 PetscViewer viewer; 1041 ierr = PetscOptionsGetViewer(PETSC_COMM_WORLD,NULL,"-process_view",&viewer,NULL,&flg);CHKERRQ(ierr); 1042 if (flg) { 1043 ierr = PetscProcessPlacementView(viewer);CHKERRQ(ierr); 1044 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1045 } 1046 } 1047 #endif 1048 1049 flg = PETSC_TRUE; 1050 ierr = PetscOptionsGetBool(NULL,NULL,"-viewfromoptions",&flg,NULL);CHKERRQ(ierr); 1051 if (!flg) {ierr = PetscOptionsPushGetViewerOff(PETSC_TRUE); CHKERRQ(ierr);} 1052 1053 #if defined(PETSC_HAVE_ADIOS) 1054 ierr = adios_init_noxml(PETSC_COMM_WORLD);CHKERRQ(ierr); 1055 ierr = adios_declare_group(&Petsc_adios_group,"PETSc","",adios_stat_default);CHKERRQ(ierr); 1056 ierr = adios_select_method(Petsc_adios_group,"MPI","","");CHKERRQ(ierr); 1057 ierr = adios_read_init_method(ADIOS_READ_METHOD_BP,PETSC_COMM_WORLD,"");CHKERRQ(ierr); 1058 #endif 1059 #if defined(PETSC_HAVE_ADIOS2) 1060 #endif 1061 1062 /* 1063 Once we are completedly initialized then we can set this variables 1064 */ 1065 PetscInitializeCalled = PETSC_TRUE; 1066 1067 ierr = PetscOptionsHasName(NULL,NULL,"-python",&flg);CHKERRQ(ierr); 1068 if (flg) {ierr = PetscPythonInitialize(NULL,NULL);CHKERRQ(ierr);} 1069 PetscFunctionReturn(0); 1070 } 1071 1072 #if defined(PETSC_USE_LOG) 1073 PETSC_INTERN PetscObject *PetscObjects; 1074 PETSC_INTERN PetscInt PetscObjectsCounts; 1075 PETSC_INTERN PetscInt PetscObjectsMaxCounts; 1076 PETSC_INTERN PetscBool PetscObjectsLog; 1077 #endif 1078 1079 /* 1080 Frees all the MPI types and operations that PETSc may have created 1081 */ 1082 PetscErrorCode PetscFreeMPIResources(void) 1083 { 1084 PetscErrorCode ierr; 1085 1086 PetscFunctionBegin; 1087 #if defined(PETSC_USE_REAL___FLOAT128) 1088 ierr = MPI_Type_free(&MPIU___FLOAT128);CHKERRQ(ierr); 1089 #if defined(PETSC_HAVE_COMPLEX) 1090 ierr = MPI_Type_free(&MPIU___COMPLEX128);CHKERRQ(ierr); 1091 #endif 1092 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1093 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1094 #elif defined(PETSC_USE_REAL___FP16) 1095 ierr = MPI_Type_free(&MPIU___FP16);CHKERRQ(ierr); 1096 ierr = MPI_Op_free(&MPIU_MAX);CHKERRQ(ierr); 1097 ierr = MPI_Op_free(&MPIU_MIN);CHKERRQ(ierr); 1098 #endif 1099 1100 #if defined(PETSC_HAVE_COMPLEX) 1101 #if !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX) 1102 ierr = MPI_Type_free(&MPIU_C_DOUBLE_COMPLEX);CHKERRQ(ierr); 1103 ierr = MPI_Type_free(&MPIU_C_COMPLEX);CHKERRQ(ierr); 1104 #endif 1105 #endif 1106 1107 #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) || defined(PETSC_USE_REAL___FP16) 1108 ierr = MPI_Op_free(&MPIU_SUM);CHKERRQ(ierr); 1109 #endif 1110 1111 ierr = MPI_Type_free(&MPIU_2SCALAR);CHKERRQ(ierr); 1112 #if defined(PETSC_USE_64BIT_INDICES) || !defined(MPI_2INT) 1113 ierr = MPI_Type_free(&MPIU_2INT);CHKERRQ(ierr); 1114 #endif 1115 ierr = MPI_Op_free(&MPIU_MAXSUM_OP);CHKERRQ(ierr); 1116 PetscFunctionReturn(0); 1117 } 1118 1119 /*@C 1120 PetscFinalize - Checks for options to be called at the conclusion 1121 of the program. MPI_Finalize() is called only if the user had not 1122 called MPI_Init() before calling PetscInitialize(). 1123 1124 Collective on PETSC_COMM_WORLD 1125 1126 Options Database Keys: 1127 + -options_view - Calls PetscOptionsView() 1128 . -options_left - Prints unused options that remain in the database 1129 . -objects_dump [all] - Prints list of objects allocated by the user that have not been freed, the option all cause all outstanding objects to be listed 1130 . -mpidump - Calls PetscMPIDump() 1131 . -malloc_dump - Calls PetscMallocDump() 1132 . -malloc_info - Prints total memory usage 1133 - -malloc_log - Prints summary of memory usage 1134 1135 Level: beginner 1136 1137 Note: 1138 See PetscInitialize() for more general runtime options. 1139 1140 .seealso: PetscInitialize(), PetscOptionsView(), PetscMallocDump(), PetscMPIDump(), PetscEnd() 1141 @*/ 1142 PetscErrorCode PetscFinalize(void) 1143 { 1144 PetscErrorCode ierr; 1145 PetscMPIInt rank; 1146 PetscInt nopt; 1147 PetscBool flg1 = PETSC_FALSE,flg2 = PETSC_FALSE,flg3 = PETSC_FALSE; 1148 PetscBool flg; 1149 #if defined(PETSC_USE_LOG) 1150 char mname[PETSC_MAX_PATH_LEN]; 1151 #endif 1152 1153 if (!PetscInitializeCalled) { 1154 printf("PetscInitialize() must be called before PetscFinalize()\n"); 1155 return(PETSC_ERR_ARG_WRONGSTATE); 1156 } 1157 PetscFunctionBegin; 1158 ierr = PetscInfo(NULL,"PetscFinalize() called\n");CHKERRQ(ierr); 1159 1160 ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr); 1161 #if defined(PETSC_HAVE_ADIOS) 1162 ierr = adios_read_finalize_method(ADIOS_READ_METHOD_BP_AGGREGATE);CHKERRQ(ierr); 1163 ierr = adios_finalize(rank);CHKERRQ(ierr); 1164 #endif 1165 #if defined(PETSC_HAVE_ADIOS2) 1166 #endif 1167 ierr = PetscOptionsHasName(NULL,NULL,"-citations",&flg);CHKERRQ(ierr); 1168 if (flg) { 1169 char *cits, filename[PETSC_MAX_PATH_LEN]; 1170 FILE *fd = PETSC_STDOUT; 1171 1172 ierr = PetscOptionsGetString(NULL,NULL,"-citations",filename,PETSC_MAX_PATH_LEN,NULL);CHKERRQ(ierr); 1173 if (filename[0]) { 1174 ierr = PetscFOpen(PETSC_COMM_WORLD,filename,"w",&fd);CHKERRQ(ierr); 1175 } 1176 ierr = PetscSegBufferGet(PetscCitationsList,1,&cits);CHKERRQ(ierr); 1177 cits[0] = 0; 1178 ierr = PetscSegBufferExtractAlloc(PetscCitationsList,&cits);CHKERRQ(ierr); 1179 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"If you publish results based on this computation please cite the following:\n");CHKERRQ(ierr); 1180 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1181 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"%s",cits);CHKERRQ(ierr); 1182 ierr = PetscFPrintf(PETSC_COMM_WORLD,fd,"===========================================================================\n");CHKERRQ(ierr); 1183 ierr = PetscFClose(PETSC_COMM_WORLD,fd);CHKERRQ(ierr); 1184 ierr = PetscFree(cits);CHKERRQ(ierr); 1185 } 1186 ierr = PetscSegBufferDestroy(&PetscCitationsList);CHKERRQ(ierr); 1187 1188 #if defined(PETSC_HAVE_SSL) && defined(PETSC_USE_SOCKET_VIEWER) 1189 /* TextBelt is run for testing purposes only, please do not use this feature often */ 1190 { 1191 PetscInt nmax = 2; 1192 char **buffs; 1193 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1194 ierr = PetscOptionsGetStringArray(NULL,NULL,"-textbelt",buffs,&nmax,&flg1);CHKERRQ(ierr); 1195 if (flg1) { 1196 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-textbelt requires either the phone number or number,\"message\""); 1197 if (nmax == 1) { 1198 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1199 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1200 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1201 } 1202 ierr = PetscTextBelt(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1203 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1204 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1205 } 1206 ierr = PetscFree(buffs);CHKERRQ(ierr); 1207 } 1208 { 1209 PetscInt nmax = 2; 1210 char **buffs; 1211 ierr = PetscMalloc1(2,&buffs);CHKERRQ(ierr); 1212 ierr = PetscOptionsGetStringArray(NULL,NULL,"-tellmycell",buffs,&nmax,&flg1);CHKERRQ(ierr); 1213 if (flg1) { 1214 if (!nmax) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_USER,"-tellmycell requires either the phone number or number,\"message\""); 1215 if (nmax == 1) { 1216 ierr = PetscMalloc1(128,&buffs[1]);CHKERRQ(ierr); 1217 ierr = PetscGetProgramName(buffs[1],32);CHKERRQ(ierr); 1218 ierr = PetscStrcat(buffs[1]," has completed");CHKERRQ(ierr); 1219 } 1220 ierr = PetscTellMyCell(PETSC_COMM_WORLD,buffs[0],buffs[1],NULL);CHKERRQ(ierr); 1221 ierr = PetscFree(buffs[0]);CHKERRQ(ierr); 1222 ierr = PetscFree(buffs[1]);CHKERRQ(ierr); 1223 } 1224 ierr = PetscFree(buffs);CHKERRQ(ierr); 1225 } 1226 #endif 1227 /* 1228 It should be safe to cancel the options monitors, since we don't expect to be setting options 1229 here (at least that are worth monitoring). Monitors ought to be released so that they release 1230 whatever memory was allocated there before -malloc_dump reports unfreed memory. 1231 */ 1232 ierr = PetscOptionsMonitorCancel();CHKERRQ(ierr); 1233 1234 #if defined(PETSC_SERIALIZE_FUNCTIONS) 1235 ierr = PetscFPTDestroy();CHKERRQ(ierr); 1236 #endif 1237 1238 1239 #if defined(PETSC_HAVE_SAWS) 1240 flg = PETSC_FALSE; 1241 ierr = PetscOptionsGetBool(NULL,NULL,"-saw_options",&flg,NULL);CHKERRQ(ierr); 1242 if (flg) { 1243 ierr = PetscOptionsSAWsDestroy();CHKERRQ(ierr); 1244 } 1245 #endif 1246 1247 #if defined(PETSC_HAVE_X) 1248 flg1 = PETSC_FALSE; 1249 ierr = PetscOptionsGetBool(NULL,NULL,"-x_virtual",&flg1,NULL);CHKERRQ(ierr); 1250 if (flg1) { 1251 /* this is a crude hack, but better than nothing */ 1252 ierr = PetscPOpen(PETSC_COMM_WORLD,NULL,"pkill -9 Xvfb","r",NULL);CHKERRQ(ierr); 1253 } 1254 #endif 1255 1256 #if !defined(PETSC_HAVE_THREADSAFETY) 1257 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_info",&flg2,NULL);CHKERRQ(ierr); 1258 if (!flg2) { 1259 flg2 = PETSC_FALSE; 1260 ierr = PetscOptionsGetBool(NULL,NULL,"-memory_view",&flg2,NULL);CHKERRQ(ierr); 1261 } 1262 if (flg2) { 1263 ierr = PetscMemoryView(PETSC_VIEWER_STDOUT_WORLD,"Summary of Memory Usage in PETSc\n");CHKERRQ(ierr); 1264 } 1265 #endif 1266 1267 #if defined(PETSC_USE_LOG) 1268 flg1 = PETSC_FALSE; 1269 ierr = PetscOptionsGetBool(NULL,NULL,"-get_total_flops",&flg1,NULL);CHKERRQ(ierr); 1270 if (flg1) { 1271 PetscLogDouble flops = 0; 1272 ierr = MPI_Reduce(&petsc_TotalFlops,&flops,1,MPI_DOUBLE,MPI_SUM,0,PETSC_COMM_WORLD);CHKERRQ(ierr); 1273 ierr = PetscPrintf(PETSC_COMM_WORLD,"Total flops over all processors %g\n",flops);CHKERRQ(ierr); 1274 } 1275 #endif 1276 1277 1278 #if defined(PETSC_USE_LOG) 1279 #if defined(PETSC_HAVE_MPE) 1280 mname[0] = 0; 1281 ierr = PetscOptionsGetString(NULL,NULL,"-log_mpe",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1282 if (flg1) { 1283 if (mname[0]) {ierr = PetscLogMPEDump(mname);CHKERRQ(ierr);} 1284 else {ierr = PetscLogMPEDump(0);CHKERRQ(ierr);} 1285 } 1286 #endif 1287 #endif 1288 1289 /* 1290 Free all objects registered with PetscObjectRegisterDestroy() such as PETSC_VIEWER_XXX_(). 1291 */ 1292 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1293 1294 #if defined(PETSC_USE_LOG) 1295 ierr = PetscOptionsPushGetViewerOff(PETSC_FALSE);CHKERRQ(ierr); 1296 ierr = PetscLogViewFromOptions();CHKERRQ(ierr); 1297 ierr = PetscOptionsPopGetViewerOff();CHKERRQ(ierr); 1298 1299 mname[0] = 0; 1300 ierr = PetscOptionsGetString(NULL,NULL,"-log_summary",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1301 if (flg1) { 1302 PetscViewer viewer; 1303 ierr = (*PetscHelpPrintf)(PETSC_COMM_WORLD,"\n\n WARNING: -log_summary is being deprecated; switch to -log_view\n\n\n");CHKERRQ(ierr); 1304 if (mname[0]) { 1305 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,mname,&viewer);CHKERRQ(ierr); 1306 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1307 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1308 } else { 1309 viewer = PETSC_VIEWER_STDOUT_WORLD; 1310 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_DEFAULT);CHKERRQ(ierr); 1311 ierr = PetscLogView(viewer);CHKERRQ(ierr); 1312 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 1313 } 1314 } 1315 1316 /* 1317 Free any objects created by the last block of code. 1318 */ 1319 ierr = PetscObjectRegisterDestroyAll();CHKERRQ(ierr); 1320 1321 mname[0] = 0; 1322 ierr = PetscOptionsGetString(NULL,NULL,"-log_all",mname,PETSC_MAX_PATH_LEN,&flg1);CHKERRQ(ierr); 1323 ierr = PetscOptionsGetString(NULL,NULL,"-log",mname,PETSC_MAX_PATH_LEN,&flg2);CHKERRQ(ierr); 1324 if (flg1 || flg2) {ierr = PetscLogDump(mname);CHKERRQ(ierr);} 1325 #endif 1326 1327 ierr = PetscStackDestroy();CHKERRQ(ierr); 1328 1329 flg1 = PETSC_FALSE; 1330 ierr = PetscOptionsGetBool(NULL,NULL,"-no_signal_handler",&flg1,NULL);CHKERRQ(ierr); 1331 if (!flg1) { ierr = PetscPopSignalHandler();CHKERRQ(ierr);} 1332 flg1 = PETSC_FALSE; 1333 ierr = PetscOptionsGetBool(NULL,NULL,"-mpidump",&flg1,NULL);CHKERRQ(ierr); 1334 if (flg1) { 1335 ierr = PetscMPIDump(stdout);CHKERRQ(ierr); 1336 } 1337 flg1 = PETSC_FALSE; 1338 flg2 = PETSC_FALSE; 1339 /* preemptive call to avoid listing this option in options table as unused */ 1340 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_dump",&flg1);CHKERRQ(ierr); 1341 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1342 ierr = PetscOptionsGetBool(NULL,NULL,"-options_view",&flg2,NULL);CHKERRQ(ierr); 1343 1344 if (flg2) { 1345 PetscViewer viewer; 1346 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1347 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1348 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1349 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1350 } 1351 1352 /* to prevent PETSc -options_left from warning */ 1353 ierr = PetscOptionsHasName(NULL,NULL,"-nox",&flg1);CHKERRQ(ierr); 1354 ierr = PetscOptionsHasName(NULL,NULL,"-nox_warning",&flg1);CHKERRQ(ierr); 1355 1356 flg3 = PETSC_FALSE; /* default value is required */ 1357 ierr = PetscOptionsGetBool(NULL,NULL,"-options_left",&flg3,&flg1);CHKERRQ(ierr); 1358 ierr = PetscOptionsAllUsed(NULL,&nopt);CHKERRQ(ierr); 1359 if (flg3) { 1360 if (!flg2) { /* have not yet printed the options */ 1361 PetscViewer viewer; 1362 ierr = PetscViewerCreate(PETSC_COMM_WORLD,&viewer);CHKERRQ(ierr); 1363 ierr = PetscViewerSetType(viewer,PETSCVIEWERASCII);CHKERRQ(ierr); 1364 ierr = PetscOptionsView(NULL,viewer);CHKERRQ(ierr); 1365 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1366 } 1367 if (!nopt) { 1368 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are no unused options.\n");CHKERRQ(ierr); 1369 } else if (nopt == 1) { 1370 ierr = PetscPrintf(PETSC_COMM_WORLD,"There is one unused database option. It is:\n");CHKERRQ(ierr); 1371 } else { 1372 ierr = PetscPrintf(PETSC_COMM_WORLD,"There are %D unused database options. They are:\n",nopt);CHKERRQ(ierr); 1373 } 1374 } 1375 #if defined(PETSC_USE_DEBUG) 1376 if (nopt && !flg3 && !flg1) { 1377 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! There are options you set that were not used!\n");CHKERRQ(ierr); 1378 ierr = PetscPrintf(PETSC_COMM_WORLD,"WARNING! could be spelling mistake, etc!\n");CHKERRQ(ierr); 1379 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1380 } else if (nopt && flg3) { 1381 #else 1382 if (nopt && flg3) { 1383 #endif 1384 ierr = PetscOptionsLeft(NULL);CHKERRQ(ierr); 1385 } 1386 1387 #if defined(PETSC_HAVE_SAWS) 1388 if (!PetscGlobalRank) { 1389 ierr = PetscStackSAWsViewOff();CHKERRQ(ierr); 1390 PetscStackCallSAWs(SAWs_Finalize,()); 1391 } 1392 #endif 1393 1394 #if defined(PETSC_USE_LOG) 1395 /* 1396 List all objects the user may have forgot to free 1397 */ 1398 if (PetscObjectsLog) { 1399 ierr = PetscOptionsHasName(NULL,NULL,"-objects_dump",&flg1);CHKERRQ(ierr); 1400 if (flg1) { 1401 MPI_Comm local_comm; 1402 char string[64]; 1403 1404 ierr = PetscOptionsGetString(NULL,NULL,"-objects_dump",string,64,NULL);CHKERRQ(ierr); 1405 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1406 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1407 ierr = PetscObjectsDump(stdout,(string[0] == 'a') ? PETSC_TRUE : PETSC_FALSE);CHKERRQ(ierr); 1408 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1409 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1410 } 1411 } 1412 #endif 1413 1414 #if defined(PETSC_USE_LOG) 1415 PetscObjectsCounts = 0; 1416 PetscObjectsMaxCounts = 0; 1417 ierr = PetscFree(PetscObjects);CHKERRQ(ierr); 1418 #endif 1419 1420 /* 1421 Destroy any packages that registered a finalize 1422 */ 1423 ierr = PetscRegisterFinalizeAll();CHKERRQ(ierr); 1424 1425 #if defined(PETSC_USE_LOG) 1426 ierr = PetscLogFinalize();CHKERRQ(ierr); 1427 #endif 1428 1429 /* 1430 Print PetscFunctionLists that have not been properly freed 1431 1432 ierr = PetscFunctionListPrintAll();CHKERRQ(ierr); 1433 */ 1434 1435 if (petsc_history) { 1436 ierr = PetscCloseHistoryFile(&petsc_history);CHKERRQ(ierr); 1437 petsc_history = 0; 1438 } 1439 ierr = PetscOptionsHelpPrintedDestroy(&PetscOptionsHelpPrintedSingleton);CHKERRQ(ierr); 1440 1441 ierr = PetscInfoAllow(PETSC_FALSE,NULL);CHKERRQ(ierr); 1442 1443 #if !defined(PETSC_HAVE_THREADSAFETY) 1444 { 1445 char fname[PETSC_MAX_PATH_LEN]; 1446 FILE *fd; 1447 int err; 1448 1449 fname[0] = 0; 1450 1451 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_dump",fname,250,&flg1);CHKERRQ(ierr); 1452 flg2 = PETSC_FALSE; 1453 ierr = PetscOptionsGetBool(NULL,NULL,"-malloc_test",&flg2,NULL);CHKERRQ(ierr); 1454 #if defined(PETSC_USE_DEBUG) 1455 if (PETSC_RUNNING_ON_VALGRIND) flg2 = PETSC_FALSE; 1456 #else 1457 flg2 = PETSC_FALSE; /* Skip reporting for optimized builds regardless of -malloc_test */ 1458 #endif 1459 if (flg1 && fname[0]) { 1460 char sname[PETSC_MAX_PATH_LEN]; 1461 1462 PetscSNPrintf(sname,PETSC_MAX_PATH_LEN,"%s_%d",fname,rank); 1463 fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); 1464 ierr = PetscMallocDump(fd);CHKERRQ(ierr); 1465 err = fclose(fd); 1466 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1467 } else if (flg1 || flg2) { 1468 MPI_Comm local_comm; 1469 1470 ierr = MPI_Comm_dup(MPI_COMM_WORLD,&local_comm);CHKERRQ(ierr); 1471 ierr = PetscSequentialPhaseBegin_Private(local_comm,1);CHKERRQ(ierr); 1472 ierr = PetscMallocDump(stdout);CHKERRQ(ierr); 1473 ierr = PetscSequentialPhaseEnd_Private(local_comm,1);CHKERRQ(ierr); 1474 ierr = MPI_Comm_free(&local_comm);CHKERRQ(ierr); 1475 } 1476 } 1477 1478 { 1479 char fname[PETSC_MAX_PATH_LEN]; 1480 FILE *fd = NULL; 1481 1482 fname[0] = 0; 1483 1484 ierr = PetscOptionsGetString(NULL,NULL,"-malloc_log",fname,250,&flg1);CHKERRQ(ierr); 1485 ierr = PetscOptionsHasName(NULL,NULL,"-malloc_log_threshold",&flg2);CHKERRQ(ierr); 1486 if (flg1 && fname[0]) { 1487 int err; 1488 1489 if (!rank) { 1490 fd = fopen(fname,"w"); 1491 if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",fname); 1492 } 1493 ierr = PetscMallocDumpLog(fd);CHKERRQ(ierr); 1494 if (fd) { 1495 err = fclose(fd); 1496 if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file"); 1497 } 1498 } else if (flg1 || flg2) { 1499 ierr = PetscMallocDumpLog(stdout);CHKERRQ(ierr); 1500 } 1501 } 1502 #endif 1503 1504 /* 1505 Close any open dynamic libraries 1506 */ 1507 ierr = PetscFinalize_DynamicLibraries();CHKERRQ(ierr); 1508 1509 /* Can be destroyed only after all the options are used */ 1510 ierr = PetscOptionsDestroyDefault();CHKERRQ(ierr); 1511 1512 PetscGlobalArgc = 0; 1513 PetscGlobalArgs = 0; 1514 1515 ierr = PetscFreeMPIResources();CHKERRQ(ierr); 1516 1517 /* 1518 Destroy any known inner MPI_Comm's and attributes pointing to them 1519 Note this will not destroy any new communicators the user has created. 1520 1521 If all PETSc objects were not destroyed those left over objects will have hanging references to 1522 the MPI_Comms that were freed; but that is ok because those PETSc objects will never be used again 1523 */ 1524 { 1525 PetscCommCounter *counter; 1526 PetscMPIInt flg; 1527 MPI_Comm icomm; 1528 union {MPI_Comm comm; void *ptr;} ucomm; 1529 ierr = MPI_Comm_get_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1530 if (flg) { 1531 icomm = ucomm.comm; 1532 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1533 if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1534 1535 ierr = MPI_Comm_delete_attr(PETSC_COMM_SELF,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1536 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1537 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1538 } 1539 ierr = MPI_Comm_get_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval,&ucomm,&flg);CHKERRQ(ierr); 1540 if (flg) { 1541 icomm = ucomm.comm; 1542 ierr = MPI_Comm_get_attr(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); 1543 if (!flg) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); 1544 1545 ierr = MPI_Comm_delete_attr(PETSC_COMM_WORLD,Petsc_InnerComm_keyval);CHKERRQ(ierr); 1546 ierr = MPI_Comm_delete_attr(icomm,Petsc_Counter_keyval);CHKERRQ(ierr); 1547 ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); 1548 } 1549 } 1550 1551 ierr = MPI_Comm_free_keyval(&Petsc_Counter_keyval);CHKERRQ(ierr); 1552 ierr = MPI_Comm_free_keyval(&Petsc_InnerComm_keyval);CHKERRQ(ierr); 1553 ierr = MPI_Comm_free_keyval(&Petsc_OuterComm_keyval);CHKERRQ(ierr); 1554 ierr = MPI_Comm_free_keyval(&Petsc_ShmComm_keyval);CHKERRQ(ierr); 1555 1556 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockOpen);CHKERRQ(ierr); 1557 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStdout);CHKERRQ(ierr); 1558 ierr = PetscSpinlockDestroy(&PetscViewerASCIISpinLockStderr);CHKERRQ(ierr); 1559 ierr = PetscSpinlockDestroy(&PetscCommSpinLock);CHKERRQ(ierr); 1560 1561 if (PetscBeganMPI) { 1562 #if defined(PETSC_HAVE_MPI_FINALIZED) 1563 PetscMPIInt flag; 1564 ierr = MPI_Finalized(&flag);CHKERRQ(ierr); 1565 if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI_Finalize() has already been called, even though MPI_Init() was called by PetscInitialize()"); 1566 #endif 1567 ierr = MPI_Finalize();CHKERRQ(ierr); 1568 } 1569 /* 1570 1571 Note: In certain cases PETSC_COMM_WORLD is never MPI_Comm_free()ed because 1572 the communicator has some outstanding requests on it. Specifically if the 1573 flag PETSC_HAVE_BROKEN_REQUEST_FREE is set (for IBM MPI implementation). See 1574 src/vec/utils/vpscat.c. Due to this the memory allocated in PetscCommDuplicate() 1575 is never freed as it should be. Thus one may obtain messages of the form 1576 [ 1] 8 bytes PetscCommDuplicate() line 645 in src/sys/mpiu.c indicating the 1577 memory was not freed. 1578 1579 */ 1580 ierr = PetscMallocClear();CHKERRQ(ierr); 1581 1582 PetscInitializeCalled = PETSC_FALSE; 1583 PetscFinalizeCalled = PETSC_TRUE; 1584 PetscFunctionReturn(0); 1585 } 1586 1587 #if defined(PETSC_MISSING_LAPACK_lsame_) 1588 PETSC_EXTERN int lsame_(char *a,char *b) 1589 { 1590 if (*a == *b) return 1; 1591 if (*a + 32 == *b) return 1; 1592 if (*a - 32 == *b) return 1; 1593 return 0; 1594 } 1595 #endif 1596 1597 #if defined(PETSC_MISSING_LAPACK_lsame) 1598 PETSC_EXTERN int lsame(char *a,char *b) 1599 { 1600 if (*a == *b) return 1; 1601 if (*a + 32 == *b) return 1; 1602 if (*a - 32 == *b) return 1; 1603 return 0; 1604 } 1605 #endif 1606