1 2 /* 3 Provides utility routines for split MPI communicator. 4 */ 5 #include <petscsys.h> /*I "petscsys.h" I*/ 6 7 extern PetscErrorCode PetscSubcommCreate_contiguous(PetscSubcomm); 8 extern PetscErrorCode PetscSubcommCreate_interlaced(PetscSubcomm); 9 10 #undef __FUNCT__ 11 #define __FUNCT__ "PetscSubcommSetNumber" 12 /*@C 13 PetscSubcommSetNumber - Set total number of subcommunicators. 14 15 Collective on MPI_Comm 16 17 Input Parameter: 18 + psubcomm - PetscSubcomm context 19 - nsubcomm - the total number of subcommunicators in psubcomm 20 21 Level: advanced 22 23 .keywords: communicator 24 25 .seealso: PetscSubcommCreate(),PetscSubcommDestroy(),PetscSubcommSetType(),PetscSubcommSetTypeGeneral() 26 @*/ 27 PetscErrorCode PetscSubcommSetNumber(PetscSubcomm psubcomm,PetscInt nsubcomm) 28 { 29 PetscErrorCode ierr; 30 MPI_Comm comm=psubcomm->parent; 31 PetscMPIInt rank,size; 32 33 PetscFunctionBegin; 34 if (!psubcomm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"PetscSubcomm is not created. Call PetscSubcommCreate() first"); 35 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 36 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 37 if (nsubcomm < 1 || nsubcomm > size) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Num of subcommunicators %D cannot be < 1 or > input comm size %D",nsubcomm,size); 38 39 psubcomm->n = nsubcomm; 40 PetscFunctionReturn(0); 41 } 42 43 #undef __FUNCT__ 44 #define __FUNCT__ "PetscSubcommSetType" 45 /*@C 46 PetscSubcommSetType - Set type of subcommunicators. 47 48 Collective on MPI_Comm 49 50 Input Parameter: 51 + psubcomm - PetscSubcomm context 52 - subcommtype - subcommunicator type, PETSC_SUBCOMM_CONTIGUOUS,PETSC_SUBCOMM_INTERLACED 53 54 Level: advanced 55 56 .keywords: communicator 57 58 .seealso: PetscSubcommCreate(),PetscSubcommDestroy(),PetscSubcommSetNumber(),PetscSubcommSetTypeGeneral() 59 @*/ 60 PetscErrorCode PetscSubcommSetType(PetscSubcomm psubcomm,const PetscSubcommType subcommtype) 61 { 62 PetscErrorCode ierr; 63 64 PetscFunctionBegin; 65 if (!psubcomm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"PetscSubcomm is not created. Call PetscSubcommCreate()"); 66 if (psubcomm->n < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"number of subcommunicators %D is incorrect. Call PetscSubcommSetNumber()",psubcomm->n); 67 68 if (subcommtype == PETSC_SUBCOMM_CONTIGUOUS){ 69 ierr = PetscSubcommCreate_contiguous(psubcomm);CHKERRQ(ierr); 70 } else if (subcommtype == PETSC_SUBCOMM_INTERLACED){ 71 ierr = PetscSubcommCreate_interlaced(psubcomm);CHKERRQ(ierr); 72 } else { 73 SETERRQ1(psubcomm->parent,PETSC_ERR_SUP,"PetscSubcommType %D is not supported yet",subcommtype); 74 } 75 PetscFunctionReturn(0); 76 } 77 78 #undef __FUNCT__ 79 #define __FUNCT__ "PetscSubcommSetTypeGeneral" 80 /*@C 81 PetscSubcommSetTypeGeneral - Set type of subcommunicators from user's specifications 82 83 Collective on MPI_Comm 84 85 Input Parameter: 86 + psubcomm - PetscSubcomm context 87 . color - control of subset assignment (nonnegative integer). Processes with the same color are in the same subcommunicator. 88 . subrank - rank in the subcommunicator 89 - duprank - rank in the dupparent (see PetscSubcomm) 90 91 Level: advanced 92 93 .keywords: communicator, create 94 95 .seealso: PetscSubcommCreate(),PetscSubcommDestroy(),PetscSubcommSetNumber(),PetscSubcommSetType() 96 @*/ 97 PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm psubcomm,PetscMPIInt color,PetscMPIInt subrank,PetscMPIInt duprank) 98 { 99 PetscErrorCode ierr; 100 MPI_Comm subcomm=0,dupcomm=0,comm=psubcomm->parent; 101 PetscMPIInt size; 102 103 PetscFunctionBegin; 104 if (!psubcomm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"PetscSubcomm is not created. Call PetscSubcommCreate()"); 105 if (psubcomm->n < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"number of subcommunicators %D is incorrect. Call PetscSubcommSetNumber()",psubcomm->n); 106 107 ierr = MPI_Comm_split(comm,color,subrank,&subcomm);CHKERRQ(ierr); 108 109 /* create dupcomm with same size as comm, but its rank, duprank, maps subcomm's contiguously into dupcomm 110 if duprank is not a valid number, then dupcomm is not created - not all applications require dupcomm! */ 111 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 112 if (duprank == PETSC_DECIDE){ 113 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"duprank==PETSC_DECIDE is not supported yet"); 114 } else if (duprank >= 0 && duprank < size){ 115 ierr = MPI_Comm_split(comm,0,duprank,&dupcomm);CHKERRQ(ierr); 116 } 117 118 psubcomm->dupparent = dupcomm; 119 psubcomm->comm = subcomm; 120 psubcomm->color = color; 121 PetscFunctionReturn(0); 122 } 123 124 #undef __FUNCT__ 125 #define __FUNCT__ "PetscSubcommDestroy" 126 PetscErrorCode PetscSubcommDestroy(PetscSubcomm *psubcomm) 127 { 128 PetscErrorCode ierr; 129 130 PetscFunctionBegin; 131 if (!*psubcomm) PetscFunctionReturn(0); 132 ierr = MPI_Comm_free(&(*psubcomm)->dupparent);CHKERRQ(ierr); 133 ierr = MPI_Comm_free(&(*psubcomm)->comm);CHKERRQ(ierr); 134 ierr = PetscFree((*psubcomm));CHKERRQ(ierr); 135 PetscFunctionReturn(0); 136 } 137 138 #undef __FUNCT__ 139 #define __FUNCT__ "PetscSubcommCreate" 140 /*@C 141 PetscSubcommCreate - Create a PetscSubcomm context. 142 143 Collective on MPI_Comm 144 145 Input Parameter: 146 + comm - MPI communicator 147 . nsubcomm - the number of subcommunicators to be created 148 - subcommtype - subcommunicator type 149 150 Output Parameter: 151 . psubcomm - location to store the PetscSubcomm context 152 153 Level: advanced 154 155 .keywords: communicator, create 156 157 .seealso: PetscSubcommDestroy() 158 @*/ 159 PetscErrorCode PetscSubcommCreate(MPI_Comm comm,PetscSubcomm *psubcomm) 160 { 161 PetscErrorCode ierr; 162 163 PetscFunctionBegin; 164 165 ierr = PetscNew(struct _n_PetscSubcomm,psubcomm);CHKERRQ(ierr); 166 (*psubcomm)->parent = comm; 167 PetscFunctionReturn(0); 168 } 169 170 #undef __FUNCT__ 171 #define __FUNCT__ "PetscSubcommCreate_contiguous" 172 PetscErrorCode PetscSubcommCreate_contiguous(PetscSubcomm psubcomm) 173 { 174 PetscErrorCode ierr; 175 PetscMPIInt rank,size,*subsize,duprank=-1,subrank=-1; 176 PetscInt np_subcomm,nleftover,i,color=-1,rankstart,nsubcomm=psubcomm->n; 177 MPI_Comm subcomm=0,dupcomm=0,comm=psubcomm->parent; 178 179 PetscFunctionBegin; 180 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 181 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 182 183 /* get size of each subcommunicator */ 184 ierr = PetscMalloc((1+nsubcomm)*sizeof(PetscMPIInt),&subsize);CHKERRQ(ierr); 185 np_subcomm = size/nsubcomm; 186 nleftover = size - nsubcomm*np_subcomm; 187 for (i=0; i<nsubcomm; i++){ 188 subsize[i] = np_subcomm; 189 if (i<nleftover) subsize[i]++; 190 } 191 192 /* get color and subrank of this proc */ 193 rankstart = 0; 194 for (i=0; i<nsubcomm; i++){ 195 if ( rank >= rankstart && rank < rankstart+subsize[i]) { 196 color = i; 197 subrank = rank - rankstart; 198 duprank = rank; 199 break; 200 } else { 201 rankstart += subsize[i]; 202 } 203 } 204 ierr = PetscFree(subsize);CHKERRQ(ierr); 205 206 ierr = MPI_Comm_split(comm,color,subrank,&subcomm);CHKERRQ(ierr); 207 208 /* create dupcomm with same size as comm, but its rank, duprank, maps subcomm's contiguously into dupcomm */ 209 ierr = MPI_Comm_split(comm,0,duprank,&dupcomm);CHKERRQ(ierr); 210 211 psubcomm->dupparent = dupcomm; 212 psubcomm->comm = subcomm; 213 psubcomm->color = color; 214 PetscFunctionReturn(0); 215 } 216 217 #undef __FUNCT__ 218 #define __FUNCT__ "PetscSubcommCreate_interlaced" 219 /* 220 Note: 221 In PCREDUNDANT, to avoid data scattering from subcomm back to original comm, we create subcommunicators 222 by iteratively taking a process into a subcommunicator. 223 Example: size=4, nsubcomm=(*psubcomm)->n=3 224 comm=(*psubcomm)->parent: 225 rank: [0] [1] [2] [3] 226 color: 0 1 2 0 227 228 subcomm=(*psubcomm)->comm: 229 subrank: [0] [0] [0] [1] 230 231 dupcomm=(*psubcomm)->dupparent: 232 duprank: [0] [2] [3] [1] 233 234 Here, subcomm[color = 0] has subsize=2, owns process [0] and [3] 235 subcomm[color = 1] has subsize=1, owns process [1] 236 subcomm[color = 2] has subsize=1, owns process [2] 237 dupcomm has same number of processes as comm, and its duprank maps 238 processes in subcomm contiguously into a 1d array: 239 duprank: [0] [1] [2] [3] 240 rank: [0] [3] [1] [2] 241 subcomm[0] subcomm[1] subcomm[2] 242 */ 243 244 PetscErrorCode PetscSubcommCreate_interlaced(PetscSubcomm psubcomm) 245 { 246 PetscErrorCode ierr; 247 PetscMPIInt rank,size,*subsize,duprank,subrank; 248 PetscInt np_subcomm,nleftover,i,j,color,nsubcomm=psubcomm->n; 249 MPI_Comm subcomm=0,dupcomm=0,comm=psubcomm->parent; 250 251 PetscFunctionBegin; 252 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 253 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 254 255 /* get size of each subcommunicator */ 256 ierr = PetscMalloc((1+nsubcomm)*sizeof(PetscMPIInt),&subsize);CHKERRQ(ierr); 257 np_subcomm = size/nsubcomm; 258 nleftover = size - nsubcomm*np_subcomm; 259 for (i=0; i<nsubcomm; i++){ 260 subsize[i] = np_subcomm; 261 if (i<nleftover) subsize[i]++; 262 } 263 264 /* find color for this proc */ 265 color = rank%nsubcomm; 266 subrank = rank/nsubcomm; 267 268 ierr = MPI_Comm_split(comm,color,subrank,&subcomm);CHKERRQ(ierr); 269 270 j = 0; duprank = 0; 271 for (i=0; i<nsubcomm; i++){ 272 if (j == color){ 273 duprank += subrank; 274 break; 275 } 276 duprank += subsize[i]; j++; 277 } 278 ierr = PetscFree(subsize);CHKERRQ(ierr); 279 280 /* create dupcomm with same size as comm, but its rank, duprank, maps subcomm's contiguously into dupcomm */ 281 ierr = MPI_Comm_split(comm,0,duprank,&dupcomm);CHKERRQ(ierr); 282 283 psubcomm->dupparent = dupcomm; 284 psubcomm->comm = subcomm; 285 psubcomm->color = color; 286 PetscFunctionReturn(0); 287 } 288 289 290