1af0996ceSBarry Smith #include <petsc/private/tsimpl.h> /*I "petscts.h" I*/
24042b796SJed Brown #include <petscdm.h>
37d5697caSHong Zhang
47d5697caSHong Zhang static const PetscInt TSEIMEXDefault = 3;
57d5697caSHong Zhang
67d5697caSHong Zhang typedef struct {
77d5697caSHong Zhang PetscInt row_ind; /* Return the term T[row_ind][col_ind] */
87d5697caSHong Zhang PetscInt col_ind; /* Return the term T[row_ind][col_ind] */
97d5697caSHong Zhang PetscInt nstages; /* Numbers of stages in current scheme */
107d5697caSHong Zhang PetscInt max_rows; /* Maximum number of rows */
117d5697caSHong Zhang PetscInt *N; /* Harmonic sequence N[max_rows] */
127d5697caSHong Zhang Vec Y; /* States computed during the step, used to complete the step */
137d5697caSHong Zhang Vec Z; /* For shift*(Y-Z) */
147d5697caSHong Zhang Vec *T; /* Working table, size determined by nstages */
15f432b948SHong Zhang Vec YdotRHS; /* g(x) Work vector holding YdotRHS during residual evaluation */
16f432b948SHong Zhang Vec YdotI; /* xdot-f(x) Work vector holding YdotI = F(t,x,xdot) when xdot =0 */
177d5697caSHong Zhang Vec Ydot; /* f(x)+g(x) Work vector */
187d5697caSHong Zhang Vec VecSolPrev; /* Work vector holding the solution from the previous step (used for interpolation) */
197d5697caSHong Zhang PetscReal shift;
207d5697caSHong Zhang PetscReal ctime;
217d5697caSHong Zhang PetscBool recompute_jacobian; /* Recompute the Jacobian at each stage, default is to freeze the Jacobian at the start of each step */
227d5697caSHong Zhang PetscBool ord_adapt; /* order adapativity */
237d5697caSHong Zhang TSStepStatus status;
247d5697caSHong Zhang } TS_EIMEX;
257d5697caSHong Zhang
267d5697caSHong Zhang /* This function is pure */
Map(PetscInt i,PetscInt j,PetscInt s)27d71ae5a4SJacob Faibussowitsch static PetscInt Map(PetscInt i, PetscInt j, PetscInt s)
28d71ae5a4SJacob Faibussowitsch {
294ad8454bSPierre Jolivet return (2 * s - j + 1) * j / 2 + i - j;
307d5697caSHong Zhang }
317d5697caSHong Zhang
TSEvaluateStep_EIMEX(TS ts,PetscInt order,Vec X,PetscBool * done)32d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEvaluateStep_EIMEX(TS ts, PetscInt order, Vec X, PetscBool *done)
33d71ae5a4SJacob Faibussowitsch {
347d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
357d5697caSHong Zhang const PetscInt ns = ext->nstages;
364d86920dSPierre Jolivet
377d5697caSHong Zhang PetscFunctionBegin;
389566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->T[Map(ext->row_ind, ext->col_ind, ns)], X));
393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
407d5697caSHong Zhang }
417d5697caSHong Zhang
TSStage_EIMEX(TS ts,PetscInt istage)42d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSStage_EIMEX(TS ts, PetscInt istage)
43d71ae5a4SJacob Faibussowitsch {
447d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
457d5697caSHong Zhang PetscReal h;
467d5697caSHong Zhang Vec Y = ext->Y, Z = ext->Z;
477d5697caSHong Zhang SNES snes;
487d5697caSHong Zhang TSAdapt adapt;
497d5697caSHong Zhang PetscInt i, its, lits;
507d5697caSHong Zhang PetscBool accept;
517d5697caSHong Zhang
527d5697caSHong Zhang PetscFunctionBegin;
539566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts, &snes));
547d5697caSHong Zhang h = ts->time_step / ext->N[istage]; /* step size for the istage-th stage */
557d5697caSHong Zhang ext->shift = 1. / h;
569566063dSJacob Faibussowitsch PetscCall(SNESSetLagJacobian(snes, -2)); /* Recompute the Jacobian on this solve, but not again */
579566063dSJacob Faibussowitsch PetscCall(VecCopy(ext->VecSolPrev, Y)); /* Take the previous solution as initial step */
587d5697caSHong Zhang
597d5697caSHong Zhang for (i = 0; i < ext->N[istage]; i++) {
607d5697caSHong Zhang ext->ctime = ts->ptime + h * i;
619566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, Z)); /* Save the solution of the previous substep */
629566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, NULL, Y));
639566063dSJacob Faibussowitsch PetscCall(SNESGetIterationNumber(snes, &its));
649566063dSJacob Faibussowitsch PetscCall(SNESGetLinearSolveIterations(snes, &lits));
659371c9d4SSatish Balay ts->snes_its += its;
669371c9d4SSatish Balay ts->ksp_its += lits;
679566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts, &adapt));
689566063dSJacob Faibussowitsch PetscCall(TSAdaptCheckStage(adapt, ts, ext->ctime, Y, &accept));
697d5697caSHong Zhang }
703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
717d5697caSHong Zhang }
727d5697caSHong Zhang
TSStep_EIMEX(TS ts)73d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSStep_EIMEX(TS ts)
74d71ae5a4SJacob Faibussowitsch {
757d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
767d5697caSHong Zhang const PetscInt ns = ext->nstages;
777d5697caSHong Zhang Vec *T = ext->T, Y = ext->Y;
787d5697caSHong Zhang SNES snes;
797d5697caSHong Zhang PetscInt i, j;
807d5697caSHong Zhang PetscBool accept = PETSC_FALSE;
817453f775SEmil Constantinescu PetscReal alpha, local_error, local_error_a, local_error_r;
827d5697caSHong Zhang
83d0609cedSBarry Smith PetscFunctionBegin;
849566063dSJacob Faibussowitsch PetscCall(TSGetSNES(ts, &snes));
859566063dSJacob Faibussowitsch PetscCall(SNESSetType(snes, "ksponly"));
867d5697caSHong Zhang ext->status = TS_STEP_INCOMPLETE;
877d5697caSHong Zhang
889566063dSJacob Faibussowitsch PetscCall(VecCopy(ts->vec_sol, ext->VecSolPrev));
897d5697caSHong Zhang
907d5697caSHong Zhang /* Apply n_j steps of the base method to obtain solutions of T(j,1),1<=j<=s */
917d5697caSHong Zhang for (j = 0; j < ns; j++) {
929566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts, j));
939566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, T[j]));
947d5697caSHong Zhang }
957d5697caSHong Zhang
967d5697caSHong Zhang for (i = 1; i < ns; i++) {
977d5697caSHong Zhang for (j = i; j < ns; j++) {
987d5697caSHong Zhang alpha = -(PetscReal)ext->N[j] / ext->N[j - i];
99d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(j, i, ns)], alpha, 1.0, 0, T[Map(j, i - 1, ns)], T[Map(j - 1, i - 1, ns)])); /* T[j][i]=alpha*T[j][i-1]+T[j-1][i-1] */
1007d5697caSHong Zhang alpha = 1.0 / (1.0 + alpha);
1019566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(j, i, ns)], alpha));
1027d5697caSHong Zhang }
1037d5697caSHong Zhang }
1047d5697caSHong Zhang
1059566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts, ns, ts->vec_sol, NULL)); /*update ts solution */
1067d5697caSHong Zhang
1077d5697caSHong Zhang if (ext->ord_adapt && ext->nstages < ext->max_rows) {
1087d5697caSHong Zhang accept = PETSC_FALSE;
1097d5697caSHong Zhang while (!accept && ext->nstages < ext->max_rows) {
1109566063dSJacob Faibussowitsch PetscCall(TSErrorWeightedNorm(ts, ts->vec_sol, T[Map(ext->nstages - 1, ext->nstages - 2, ext->nstages)], ts->adapt->wnormtype, &local_error, &local_error_a, &local_error_r));
1117d5697caSHong Zhang accept = (local_error < 1.0) ? PETSC_TRUE : PETSC_FALSE;
1127d5697caSHong Zhang
1137d5697caSHong Zhang if (!accept) { /* add one more stage*/
1149566063dSJacob Faibussowitsch PetscCall(TSStage_EIMEX(ts, ext->nstages));
1159371c9d4SSatish Balay ext->nstages++;
1169371c9d4SSatish Balay ext->row_ind++;
1179371c9d4SSatish Balay ext->col_ind++;
1187d5697caSHong Zhang /*T table need to be recycled*/
1199566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol, (1 + ext->nstages) * ext->nstages / 2, &ext->T));
1207d5697caSHong Zhang for (i = 0; i < ext->nstages - 1; i++) {
12148a46eb9SPierre Jolivet for (j = 0; j <= i; j++) PetscCall(VecCopy(T[Map(i, j, ext->nstages - 1)], ext->T[Map(i, j, ext->nstages)]));
1227d5697caSHong Zhang }
1239566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs(ext->nstages * (ext->nstages - 1) / 2, &T));
1247d5697caSHong Zhang T = ext->T; /*reset the pointer*/
1257d5697caSHong Zhang /*recycling finished, store the new solution*/
1269566063dSJacob Faibussowitsch PetscCall(VecCopy(Y, T[ext->nstages - 1]));
1277d5697caSHong Zhang /*extrapolation for the newly added stage*/
1287d5697caSHong Zhang for (i = 1; i < ext->nstages; i++) {
1297d5697caSHong Zhang alpha = -(PetscReal)ext->N[ext->nstages - 1] / ext->N[ext->nstages - 1 - i];
130d0609cedSBarry Smith PetscCall(VecAXPBYPCZ(T[Map(ext->nstages - 1, i, ext->nstages)], alpha, 1.0, 0, T[Map(ext->nstages - 1, i - 1, ext->nstages)], T[Map(ext->nstages - 1 - 1, i - 1, ext->nstages)])); /*T[ext->nstages-1][i]=alpha*T[ext->nstages-1][i-1]+T[ext->nstages-1-1][i-1]*/
1317d5697caSHong Zhang alpha = 1.0 / (1.0 + alpha);
1329566063dSJacob Faibussowitsch PetscCall(VecScale(T[Map(ext->nstages - 1, i, ext->nstages)], alpha));
1337d5697caSHong Zhang }
1347d5697caSHong Zhang /*update ts solution */
1359566063dSJacob Faibussowitsch PetscCall(TSEvaluateStep(ts, ext->nstages, ts->vec_sol, NULL));
1367d5697caSHong Zhang } /*end if !accept*/
1377d5697caSHong Zhang } /*end while*/
1387d5697caSHong Zhang
13948a46eb9SPierre Jolivet if (ext->nstages == ext->max_rows) PetscCall(PetscInfo(ts, "Max number of rows has been used\n"));
1407d5697caSHong Zhang } /*end if ext->ord_adapt*/
1417d5697caSHong Zhang ts->ptime += ts->time_step;
1427d5697caSHong Zhang ext->status = TS_STEP_COMPLETE;
1437d5697caSHong Zhang
1447d5697caSHong Zhang if (ext->status != TS_STEP_COMPLETE && !ts->reason) ts->reason = TS_DIVERGED_STEP_REJECTED;
1453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1467d5697caSHong Zhang }
1477d5697caSHong Zhang
1487d5697caSHong Zhang /* cubic Hermit spline */
TSInterpolate_EIMEX(TS ts,PetscReal itime,Vec X)149d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSInterpolate_EIMEX(TS ts, PetscReal itime, Vec X)
150d71ae5a4SJacob Faibussowitsch {
1517d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
1527d5697caSHong Zhang PetscReal t, a, b;
153be5899b3SLisandro Dalcin Vec Y0 = ext->VecSolPrev, Y1 = ext->Y, Ydot = ext->Ydot, YdotI = ext->YdotI;
154be5899b3SLisandro Dalcin const PetscReal h = ts->ptime - ts->ptime_prev;
1554d86920dSPierre Jolivet
1567d5697caSHong Zhang PetscFunctionBegin;
1577d5697caSHong Zhang t = (itime - ts->ptime + h) / h;
1587d5697caSHong Zhang /* YdotI = -f(x)-g(x) */
1597d5697caSHong Zhang
1609566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot));
1619566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ts->ptime - h, Y0, Ydot, YdotI, PETSC_FALSE));
1627d5697caSHong Zhang
16316dc5bacSEmil Constantinescu a = 2.0 * t * t * t - 3.0 * t * t + 1.0;
16416dc5bacSEmil Constantinescu b = -(t * t * t - 2.0 * t * t + t) * h;
1659566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X, a, b, 0.0, Y0, YdotI));
1667d5697caSHong Zhang
1679566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ts->ptime, Y1, Ydot, YdotI, PETSC_FALSE));
16816dc5bacSEmil Constantinescu a = -2.0 * t * t * t + 3.0 * t * t;
16916dc5bacSEmil Constantinescu b = -(t * t * t - t * t) * h;
1709566063dSJacob Faibussowitsch PetscCall(VecAXPBYPCZ(X, a, b, 1.0, Y1, YdotI));
1713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1727d5697caSHong Zhang }
1737d5697caSHong Zhang
TSReset_EIMEX(TS ts)174d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSReset_EIMEX(TS ts)
175d71ae5a4SJacob Faibussowitsch {
1767d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
1777d5697caSHong Zhang PetscInt ns;
1787d5697caSHong Zhang
1797d5697caSHong Zhang PetscFunctionBegin;
1807d5697caSHong Zhang ns = ext->nstages;
1819566063dSJacob Faibussowitsch PetscCall(VecDestroyVecs((1 + ns) * ns / 2, &ext->T));
1829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Y));
1839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Z));
1849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotRHS));
1859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->YdotI));
1869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->Ydot));
1879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ext->VecSolPrev));
1889566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N));
1893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1907d5697caSHong Zhang }
1917d5697caSHong Zhang
TSDestroy_EIMEX(TS ts)192d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSDestroy_EIMEX(TS ts)
193d71ae5a4SJacob Faibussowitsch {
1947d5697caSHong Zhang PetscFunctionBegin;
1959566063dSJacob Faibussowitsch PetscCall(TSReset_EIMEX(ts));
1969566063dSJacob Faibussowitsch PetscCall(PetscFree(ts->data));
1979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetMaxRows_C", NULL));
1989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetRowCol_C", NULL));
1999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetOrdAdapt_C", NULL));
2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2017d5697caSHong Zhang }
2027d5697caSHong Zhang
TSEIMEXGetVecs(TS ts,DM dm,Vec * Z,Vec * Ydot,Vec * YdotI,Vec * YdotRHS)203d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXGetVecs(TS ts, DM dm, Vec *Z, Vec *Ydot, Vec *YdotI, Vec *YdotRHS)
204d71ae5a4SJacob Faibussowitsch {
2057d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
2067d5697caSHong Zhang
2077d5697caSHong Zhang PetscFunctionBegin;
2087d5697caSHong Zhang if (Z) {
209ac530a7eSPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_Z", Z));
210ac530a7eSPierre Jolivet else *Z = ext->Z;
2117d5697caSHong Zhang }
2127d5697caSHong Zhang if (Ydot) {
213ac530a7eSPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_Ydot", Ydot));
214ac530a7eSPierre Jolivet else *Ydot = ext->Ydot;
2157d5697caSHong Zhang }
2167d5697caSHong Zhang if (YdotI) {
217ac530a7eSPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_YdotI", YdotI));
218ac530a7eSPierre Jolivet else *YdotI = ext->YdotI;
2197d5697caSHong Zhang }
2207d5697caSHong Zhang if (YdotRHS) {
221ac530a7eSPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMGetNamedGlobalVector(dm, "TSEIMEX_YdotRHS", YdotRHS));
222ac530a7eSPierre Jolivet else *YdotRHS = ext->YdotRHS;
2237d5697caSHong Zhang }
2243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2257d5697caSHong Zhang }
2267d5697caSHong Zhang
TSEIMEXRestoreVecs(TS ts,DM dm,Vec * Z,Vec * Ydot,Vec * YdotI,Vec * YdotRHS)227d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXRestoreVecs(TS ts, DM dm, Vec *Z, Vec *Ydot, Vec *YdotI, Vec *YdotRHS)
228d71ae5a4SJacob Faibussowitsch {
2297d5697caSHong Zhang PetscFunctionBegin;
2307d5697caSHong Zhang if (Z) {
23148a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_Z", Z));
2327d5697caSHong Zhang }
2337d5697caSHong Zhang if (Ydot) {
23448a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_Ydot", Ydot));
2357d5697caSHong Zhang }
2367d5697caSHong Zhang if (YdotI) {
23748a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_YdotI", YdotI));
2387d5697caSHong Zhang }
2397d5697caSHong Zhang if (YdotRHS) {
24048a46eb9SPierre Jolivet if (dm && dm != ts->dm) PetscCall(DMRestoreNamedGlobalVector(dm, "TSEIMEX_YdotRHS", YdotRHS));
2417d5697caSHong Zhang }
2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2437d5697caSHong Zhang }
2447d5697caSHong Zhang
2457d5697caSHong Zhang /*
2467d5697caSHong Zhang This defines the nonlinear equation that is to be solved with SNES
2477d5697caSHong Zhang Fn[t0+Theta*dt, U, (U-U0)*shift] = 0
2487d5697caSHong Zhang In the case of Backward Euler, Fn = (U-U0)/h-g(t1,U))
2497d5697caSHong Zhang Since FormIFunction calculates G = ydot - g(t,y), ydot will be set to (U-U0)/h
2507d5697caSHong Zhang */
SNESTSFormFunction_EIMEX(SNES snes,Vec X,Vec G,TS ts)251d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESTSFormFunction_EIMEX(SNES snes, Vec X, Vec G, TS ts)
252d71ae5a4SJacob Faibussowitsch {
2537d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
2547d5697caSHong Zhang Vec Ydot, Z;
2557d5697caSHong Zhang DM dm, dmsave;
2567d5697caSHong Zhang
2577d5697caSHong Zhang PetscFunctionBegin;
2589566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(G));
2597d5697caSHong Zhang
2609566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm));
2619566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, dm, &Z, &Ydot, NULL, NULL));
2629566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(Ydot));
2637d5697caSHong Zhang dmsave = ts->dm;
2647d5697caSHong Zhang ts->dm = dm;
2659566063dSJacob Faibussowitsch PetscCall(TSComputeIFunction(ts, ext->ctime, X, Ydot, G, PETSC_FALSE));
2667d5697caSHong Zhang /* PETSC_FALSE indicates non-imex, adding explicit RHS to the implicit I function. */
2679566063dSJacob Faibussowitsch PetscCall(VecCopy(G, Ydot));
2687d5697caSHong Zhang ts->dm = dmsave;
2699566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, dm, &Z, &Ydot, NULL, NULL));
2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2717d5697caSHong Zhang }
2727d5697caSHong Zhang
2737d5697caSHong Zhang /*
2747d5697caSHong Zhang This defined the Jacobian matrix for SNES. Jn = (I/h-g'(t,y))
2757d5697caSHong Zhang */
SNESTSFormJacobian_EIMEX(SNES snes,Vec X,Mat A,Mat B,TS ts)276d71ae5a4SJacob Faibussowitsch static PetscErrorCode SNESTSFormJacobian_EIMEX(SNES snes, Vec X, Mat A, Mat B, TS ts)
277d71ae5a4SJacob Faibussowitsch {
2787d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
2797d5697caSHong Zhang Vec Ydot;
2807d5697caSHong Zhang DM dm, dmsave;
2814d86920dSPierre Jolivet
2827d5697caSHong Zhang PetscFunctionBegin;
2839566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm));
2849566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, dm, NULL, &Ydot, NULL, NULL));
2859566063dSJacob Faibussowitsch /* PetscCall(VecZeroEntries(Ydot)); */
2867d5697caSHong Zhang /* ext->Ydot have already been computed in SNESTSFormFunction_EIMEX (SNES guarantees this) */
2877d5697caSHong Zhang dmsave = ts->dm;
2887d5697caSHong Zhang ts->dm = dm;
2899566063dSJacob Faibussowitsch PetscCall(TSComputeIJacobian(ts, ts->ptime, X, Ydot, ext->shift, A, B, PETSC_TRUE));
2907d5697caSHong Zhang ts->dm = dmsave;
2919566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, dm, NULL, &Ydot, NULL, NULL));
2923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2937d5697caSHong Zhang }
2947d5697caSHong Zhang
DMCoarsenHook_TSEIMEX(DM fine,DM coarse,PetscCtx ctx)295*2a8381b2SBarry Smith static PetscErrorCode DMCoarsenHook_TSEIMEX(DM fine, DM coarse, PetscCtx ctx)
296d71ae5a4SJacob Faibussowitsch {
2977d5697caSHong Zhang PetscFunctionBegin;
2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2997d5697caSHong Zhang }
3007d5697caSHong Zhang
DMRestrictHook_TSEIMEX(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,PetscCtx ctx)301*2a8381b2SBarry Smith static PetscErrorCode DMRestrictHook_TSEIMEX(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse, PetscCtx ctx)
302d71ae5a4SJacob Faibussowitsch {
3037d5697caSHong Zhang TS ts = (TS)ctx;
3047d5697caSHong Zhang Vec Z, Z_c;
3057d5697caSHong Zhang
3067d5697caSHong Zhang PetscFunctionBegin;
3079566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, fine, &Z, NULL, NULL, NULL));
3089566063dSJacob Faibussowitsch PetscCall(TSEIMEXGetVecs(ts, coarse, &Z_c, NULL, NULL, NULL));
3099566063dSJacob Faibussowitsch PetscCall(MatRestrict(restrct, Z, Z_c));
3109566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(Z_c, rscale, Z_c));
3119566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, fine, &Z, NULL, NULL, NULL));
3129566063dSJacob Faibussowitsch PetscCall(TSEIMEXRestoreVecs(ts, coarse, &Z_c, NULL, NULL, NULL));
3133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3147d5697caSHong Zhang }
3157d5697caSHong Zhang
TSSetUp_EIMEX(TS ts)316d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSSetUp_EIMEX(TS ts)
317d71ae5a4SJacob Faibussowitsch {
3187d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
3197d5697caSHong Zhang DM dm;
3207d5697caSHong Zhang
321955c1f14SBarry Smith PetscFunctionBegin;
3227d5697caSHong Zhang if (!ext->N) { /* ext->max_rows not set */
3239566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetMaxRows(ts, TSEIMEXDefault));
3247d5697caSHong Zhang }
3257d5697caSHong Zhang if (-1 == ext->row_ind && -1 == ext->col_ind) {
3269566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts, ext->max_rows, ext->max_rows));
3277d5697caSHong Zhang } else { /* ext->row_ind and col_ind already set */
32848a46eb9SPierre Jolivet if (ext->ord_adapt) PetscCall(PetscInfo(ts, "Order adaptivity is enabled and TSEIMEXSetRowCol or -ts_eimex_row_col option will take no effect\n"));
3297d5697caSHong Zhang }
3307d5697caSHong Zhang
3317d5697caSHong Zhang if (ext->ord_adapt) {
3327d5697caSHong Zhang ext->nstages = 2; /* Start with the 2-stage scheme */
3339566063dSJacob Faibussowitsch PetscCall(TSEIMEXSetRowCol(ts, ext->nstages, ext->nstages));
3347d5697caSHong Zhang } else {
3357d5697caSHong Zhang ext->nstages = ext->max_rows; /* by default nstages is the same as max_rows, this can be changed by setting order adaptivity */
3367d5697caSHong Zhang }
3377d5697caSHong Zhang
3389566063dSJacob Faibussowitsch PetscCall(TSGetAdapt(ts, &ts->adapt));
3392ffb9264SLisandro Dalcin
3409566063dSJacob Faibussowitsch PetscCall(VecDuplicateVecs(ts->vec_sol, (1 + ext->nstages) * ext->nstages / 2, &ext->T)); /* full T table */
3419566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->YdotI));
3429566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->YdotRHS));
3439566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Ydot));
3449566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->VecSolPrev));
3459566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Y));
3469566063dSJacob Faibussowitsch PetscCall(VecDuplicate(ts->vec_sol, &ext->Z));
3479566063dSJacob Faibussowitsch PetscCall(TSGetDM(ts, &dm));
3481baa6e33SBarry Smith if (dm) PetscCall(DMCoarsenHookAdd(dm, DMCoarsenHook_TSEIMEX, DMRestrictHook_TSEIMEX, ts));
3493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3507d5697caSHong Zhang }
3517d5697caSHong Zhang
TSSetFromOptions_EIMEX(TS ts,PetscOptionItems PetscOptionsObject)352ce78bad3SBarry Smith static PetscErrorCode TSSetFromOptions_EIMEX(TS ts, PetscOptionItems PetscOptionsObject)
353d71ae5a4SJacob Faibussowitsch {
3547d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
3559200755eSBarry Smith PetscInt tindex[2];
3567d5697caSHong Zhang PetscInt np = 2, nrows = TSEIMEXDefault;
3579200755eSBarry Smith
3587d5697caSHong Zhang PetscFunctionBegin;
3599200755eSBarry Smith tindex[0] = TSEIMEXDefault;
3609200755eSBarry Smith tindex[1] = TSEIMEXDefault;
361d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "EIMEX ODE solver options");
3627d5697caSHong Zhang {
3637d5697caSHong Zhang PetscBool flg;
3649566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-ts_eimex_max_rows", "Define the maximum number of rows used", "TSEIMEXSetMaxRows", nrows, &nrows, &flg)); /* default value 3 */
3651baa6e33SBarry Smith if (flg) PetscCall(TSEIMEXSetMaxRows(ts, nrows));
3669566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-ts_eimex_row_col", "Return the specific term in the T table", "TSEIMEXSetRowCol", tindex, &np, &flg));
36748a46eb9SPierre Jolivet if (flg) PetscCall(TSEIMEXSetRowCol(ts, tindex[0], tindex[1]));
3689566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-ts_eimex_order_adapt", "Solve the problem with adaptive order", "TSEIMEXSetOrdAdapt", ext->ord_adapt, &ext->ord_adapt, NULL));
3697d5697caSHong Zhang }
370d0609cedSBarry Smith PetscOptionsHeadEnd();
3713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3727d5697caSHong Zhang }
3737d5697caSHong Zhang
TSView_EIMEX(TS ts,PetscViewer viewer)374d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSView_EIMEX(TS ts, PetscViewer viewer)
375d71ae5a4SJacob Faibussowitsch {
3767d5697caSHong Zhang PetscFunctionBegin;
3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3787d5697caSHong Zhang }
3797d5697caSHong Zhang
380cc4c1da9SBarry Smith /*@
381bcf0153eSBarry Smith TSEIMEXSetMaxRows - Set the maximum number of rows for `TSEIMEX` schemes
3827d5697caSHong Zhang
38320f4b53cSBarry Smith Logically Collective
3847d5697caSHong Zhang
385d8d19677SJose E. Roman Input Parameters:
3867d5697caSHong Zhang + ts - timestepping context
3877d5697caSHong Zhang - nrows - maximum number of rows
3887d5697caSHong Zhang
3897d5697caSHong Zhang Level: intermediate
3907d5697caSHong Zhang
3911cc06b55SBarry Smith .seealso: [](ch_ts), `TSEIMEXSetRowCol()`, `TSEIMEXSetOrdAdapt()`, `TSEIMEX`
3927d5697caSHong Zhang @*/
TSEIMEXSetMaxRows(TS ts,PetscInt nrows)393d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetMaxRows(TS ts, PetscInt nrows)
394d71ae5a4SJacob Faibussowitsch {
3957d5697caSHong Zhang PetscFunctionBegin;
3967d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1);
397cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetMaxRows_C", (TS, PetscInt), (ts, nrows));
3983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3997d5697caSHong Zhang }
4007d5697caSHong Zhang
401cc4c1da9SBarry Smith /*@
4022fe279fdSBarry Smith TSEIMEXSetRowCol - Set the number of rows and the number of columns for the tableau that represents the T solution in the `TSEIMEX` scheme
4037d5697caSHong Zhang
40420f4b53cSBarry Smith Logically Collective
4057d5697caSHong Zhang
406d8d19677SJose E. Roman Input Parameters:
4077d5697caSHong Zhang + ts - timestepping context
4082fe279fdSBarry Smith . row - the row
4092fe279fdSBarry Smith - col - the column
4107d5697caSHong Zhang
4117d5697caSHong Zhang Level: intermediate
4127d5697caSHong Zhang
4131cc06b55SBarry Smith .seealso: [](ch_ts), `TSEIMEXSetMaxRows()`, `TSEIMEXSetOrdAdapt()`, `TSEIMEX`
4147d5697caSHong Zhang @*/
TSEIMEXSetRowCol(TS ts,PetscInt row,PetscInt col)415d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetRowCol(TS ts, PetscInt row, PetscInt col)
416d71ae5a4SJacob Faibussowitsch {
4177d5697caSHong Zhang PetscFunctionBegin;
4187d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1);
419cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetRowCol_C", (TS, PetscInt, PetscInt), (ts, row, col));
4203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4217d5697caSHong Zhang }
4227d5697caSHong Zhang
423cc4c1da9SBarry Smith /*@
424bcf0153eSBarry Smith TSEIMEXSetOrdAdapt - Set the order adaptativity for the `TSEIMEX` schemes
4257d5697caSHong Zhang
42620f4b53cSBarry Smith Logically Collective
4277d5697caSHong Zhang
428d8d19677SJose E. Roman Input Parameters:
4297d5697caSHong Zhang + ts - timestepping context
430b43aa488SJacob Faibussowitsch - flg - index in the T table
4317d5697caSHong Zhang
4327d5697caSHong Zhang Level: intermediate
4337d5697caSHong Zhang
43442747ad1SJacob Faibussowitsch .seealso: [](ch_ts), `TSEIMEXSetRowCol()`, `TSEIMEX`
4357d5697caSHong Zhang @*/
TSEIMEXSetOrdAdapt(TS ts,PetscBool flg)436d71ae5a4SJacob Faibussowitsch PetscErrorCode TSEIMEXSetOrdAdapt(TS ts, PetscBool flg)
437d71ae5a4SJacob Faibussowitsch {
4387d5697caSHong Zhang PetscFunctionBegin;
4397d5697caSHong Zhang PetscValidHeaderSpecific(ts, TS_CLASSID, 1);
440cac4c232SBarry Smith PetscTryMethod(ts, "TSEIMEXSetOrdAdapt_C", (TS, PetscBool), (ts, flg));
4413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4427d5697caSHong Zhang }
4437d5697caSHong Zhang
TSEIMEXSetMaxRows_EIMEX(TS ts,PetscInt nrows)444d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetMaxRows_EIMEX(TS ts, PetscInt nrows)
445d71ae5a4SJacob Faibussowitsch {
4467d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
4477d5697caSHong Zhang PetscInt i;
4487d5697caSHong Zhang
4497d5697caSHong Zhang PetscFunctionBegin;
45063a3b9bcSJacob Faibussowitsch PetscCheck(nrows >= 0 && nrows <= 100, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "Max number of rows (current value %" PetscInt_FMT ") should be an integer number between 1 and 100", nrows);
4519566063dSJacob Faibussowitsch PetscCall(PetscFree(ext->N));
4527d5697caSHong Zhang ext->max_rows = nrows;
4539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nrows, &ext->N));
4547d5697caSHong Zhang for (i = 0; i < nrows; i++) ext->N[i] = i + 1;
4553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4567d5697caSHong Zhang }
4577d5697caSHong Zhang
TSEIMEXSetRowCol_EIMEX(TS ts,PetscInt row,PetscInt col)458d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetRowCol_EIMEX(TS ts, PetscInt row, PetscInt col)
459d71ae5a4SJacob Faibussowitsch {
4607d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
4617d5697caSHong Zhang
4627d5697caSHong Zhang PetscFunctionBegin;
46363a3b9bcSJacob Faibussowitsch PetscCheck(row >= 1 && col >= 1, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The row or column index (current value %" PetscInt_FMT ",%" PetscInt_FMT ") should not be less than 1 ", row, col);
4649371c9d4SSatish Balay PetscCheck(row <= ext->max_rows && col <= ext->max_rows, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The row or column index (current value %" PetscInt_FMT ",%" PetscInt_FMT ") exceeds the maximum number of rows %" PetscInt_FMT, row, col,
4659371c9d4SSatish Balay ext->max_rows);
46663a3b9bcSJacob Faibussowitsch PetscCheck(col <= row, ((PetscObject)ts)->comm, PETSC_ERR_ARG_OUTOFRANGE, "The column index (%" PetscInt_FMT ") exceeds the row index (%" PetscInt_FMT ")", col, row);
4677d5697caSHong Zhang
4687d5697caSHong Zhang ext->row_ind = row - 1;
4697d5697caSHong Zhang ext->col_ind = col - 1; /* Array index in C starts from 0 */
4703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4717d5697caSHong Zhang }
4727d5697caSHong Zhang
TSEIMEXSetOrdAdapt_EIMEX(TS ts,PetscBool flg)473d71ae5a4SJacob Faibussowitsch static PetscErrorCode TSEIMEXSetOrdAdapt_EIMEX(TS ts, PetscBool flg)
474d71ae5a4SJacob Faibussowitsch {
4757d5697caSHong Zhang TS_EIMEX *ext = (TS_EIMEX *)ts->data;
4764d86920dSPierre Jolivet
4777d5697caSHong Zhang PetscFunctionBegin;
4787d5697caSHong Zhang ext->ord_adapt = flg;
4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4807d5697caSHong Zhang }
4817d5697caSHong Zhang
4827d5697caSHong Zhang /*MC
483f432b948SHong Zhang TSEIMEX - Time stepping with Extrapolated W-IMEX methods {cite}`constantinescu_a2010a`.
484679f3ef1SBarry Smith
485679f3ef1SBarry Smith These methods are intended for problems with well-separated time scales, especially when a slow scale is strongly nonlinear such that it
486bcf0153eSBarry Smith is expensive to solve with a fully implicit method. The user should provide the stiff part of the equation using `TSSetIFunction()` and the
487bcf0153eSBarry Smith non-stiff part with `TSSetRHSFunction()`.
488bcf0153eSBarry Smith
489bcf0153eSBarry Smith Level: beginner
4907d5697caSHong Zhang
4917d5697caSHong Zhang Notes:
492bcf0153eSBarry Smith The default is a 3-stage scheme, it can be changed with `TSEIMEXSetMaxRows()` or -ts_eimex_max_rows
4937d5697caSHong Zhang
494f432b948SHong Zhang This method currently only works with ODEs, for which the stiff part $ F(t,X,Xdot) $ has the form $ Xdot + Fhat(t,X)$.
4957d5697caSHong Zhang
496679f3ef1SBarry Smith The general system is written as
497679f3ef1SBarry Smith
4981d27aa22SBarry Smith $$
499f432b948SHong Zhang F(t,X,Xdot) = G(t,X)
5001d27aa22SBarry Smith $$
501679f3ef1SBarry Smith
502f432b948SHong Zhang where F represents the stiff part and G represents the non-stiff part. The user should provide the stiff part
503bcf0153eSBarry Smith of the equation using TSSetIFunction() and the non-stiff part with `TSSetRHSFunction()`.
504679f3ef1SBarry Smith This method is designed to be linearly implicit on G and can use an approximate and lagged Jacobian.
505679f3ef1SBarry Smith
506679f3ef1SBarry Smith Another common form for the system is
507679f3ef1SBarry Smith
5081d27aa22SBarry Smith $$
509679f3ef1SBarry Smith y'=f(x)+g(x)
5101d27aa22SBarry Smith $$
511679f3ef1SBarry Smith
512679f3ef1SBarry Smith The relationship between F,G and f,g is
513679f3ef1SBarry Smith
5141d27aa22SBarry Smith $$
515f432b948SHong Zhang F = y'-f(x), G = g(x)
5161d27aa22SBarry Smith $$
517679f3ef1SBarry Smith
5181cc06b55SBarry Smith .seealso: [](ch_ts), `TSCreate()`, `TS`, `TSSetType()`, `TSEIMEXSetMaxRows()`, `TSEIMEXSetRowCol()`, `TSEIMEXSetOrdAdapt()`, `TSType`
5197d5697caSHong Zhang M*/
TSCreate_EIMEX(TS ts)520d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode TSCreate_EIMEX(TS ts)
521d71ae5a4SJacob Faibussowitsch {
5227d5697caSHong Zhang TS_EIMEX *ext;
5237d5697caSHong Zhang
5247d5697caSHong Zhang PetscFunctionBegin;
5257d5697caSHong Zhang ts->ops->reset = TSReset_EIMEX;
5267d5697caSHong Zhang ts->ops->destroy = TSDestroy_EIMEX;
5277d5697caSHong Zhang ts->ops->view = TSView_EIMEX;
5287d5697caSHong Zhang ts->ops->setup = TSSetUp_EIMEX;
5297d5697caSHong Zhang ts->ops->step = TSStep_EIMEX;
5307d5697caSHong Zhang ts->ops->interpolate = TSInterpolate_EIMEX;
5317d5697caSHong Zhang ts->ops->evaluatestep = TSEvaluateStep_EIMEX;
5327d5697caSHong Zhang ts->ops->setfromoptions = TSSetFromOptions_EIMEX;
5337d5697caSHong Zhang ts->ops->snesfunction = SNESTSFormFunction_EIMEX;
5347d5697caSHong Zhang ts->ops->snesjacobian = SNESTSFormJacobian_EIMEX;
5352ffb9264SLisandro Dalcin ts->default_adapt_type = TSADAPTNONE;
5367d5697caSHong Zhang
537efd4aadfSBarry Smith ts->usessnes = PETSC_TRUE;
538efd4aadfSBarry Smith
5394dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&ext));
5407d5697caSHong Zhang ts->data = (void *)ext;
5417d5697caSHong Zhang
5427d5697caSHong Zhang ext->ord_adapt = PETSC_FALSE; /* By default, no order adapativity */
5437d5697caSHong Zhang ext->row_ind = -1;
5447d5697caSHong Zhang ext->col_ind = -1;
5457d5697caSHong Zhang ext->max_rows = TSEIMEXDefault;
5467d5697caSHong Zhang ext->nstages = TSEIMEXDefault;
5477d5697caSHong Zhang
5489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetMaxRows_C", TSEIMEXSetMaxRows_EIMEX));
5499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetRowCol_C", TSEIMEXSetRowCol_EIMEX));
5509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)ts, "TSEIMEXSetOrdAdapt_C", TSEIMEXSetOrdAdapt_EIMEX));
5513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
5527d5697caSHong Zhang }
553