xref: /petsc/src/ts/impls/eimex/eimex.c (revision fe998a80077c9ee0917a39496df43fc256e1b478)
1 /*
2  * eimex.c
3  *
4  *  Created on: Jun 21, 2012
5  *      Written by Hong Zhang (zhang@vt.edu), Virginia Tech
6  *                 Emil Constantinescu (emconsta@mcs.anl.gov), Argonne National Laboratory
7  */
8 /*MC
9       EIMEX - Time stepping with Extrapolated IMEX methods.
10 
11   Notes:
12   The general system is written as
13 
14   G(t,X,Xdot) = F(t,X)
15 
16   where G represents the stiff part and F represents the non-stiff part. The user should provide the stiff part
17   of the equation using TSSetIFunction() and the non-stiff part with TSSetRHSFunction().
18   This method is designed to be linearly implicit on G and can use an approximate and lagged Jacobian.
19 
20   Another common form for the system is
21 
22   y'=f(x)+g(x)
23 
24   The relationship between F,G and f,g is
25 
26   G = y'-g(x), F = f(x)
27 
28  References
29   E. Constantinescu and A. Sandu, Extrapolated implicit-explicit time stepping, SIAM Journal on Scientific
30 Computing, 31 (2010), pp. 4452-4477.
31 
32       Level: beginner
33 
34 .seealso:  TSCreate(), TS, TSSetType(), TSEIMEXSetMaxRows(), TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt()
35 
36  M*/
37 #include <petsc-private/tsimpl.h>                /*I   "petscts.h"   I*/
38 #include <petscdm.h>
39 
40 static const PetscInt TSEIMEXDefault = 3;
41 
42 typedef struct {
43   PetscInt     row_ind;         /* Return the term T[row_ind][col_ind] */
44   PetscInt     col_ind;         /* Return the term T[row_ind][col_ind] */
45   PetscInt     nstages;         /* Numbers of stages in current scheme */
46   PetscInt     max_rows;        /* Maximum number of rows */
47   PetscInt     *N;              /* Harmonic sequence N[max_rows] */
48   Vec          Y;               /* States computed during the step, used to complete the step */
49   Vec          Z;               /* For shift*(Y-Z) */
50   Vec          *T;              /* Working table, size determined by nstages */
51   Vec          YdotRHS;         /* f(x) Work vector holding YdotRHS during residual evaluation */
52   Vec          YdotI;           /* xdot-g(x) Work vector holding YdotI = G(t,x,xdot) when xdot =0 */
53   Vec          Ydot;            /* f(x)+g(x) Work vector */
54   Vec          VecSolPrev;      /* Work vector holding the solution from the previous step (used for interpolation) */
55   PetscReal    shift;
56   PetscReal    ctime;
57   PetscBool    recompute_jacobian; /* Recompute the Jacobian at each stage, default is to freeze the Jacobian at the start of each step */
58   PetscBool    ord_adapt;       /* order adapativity */
59   TSStepStatus status;
60 } TS_EIMEX;
61 
62 /* This function is pure */
63 static PetscInt Map(PetscInt i, PetscInt j, PetscInt s)
64 {
65   return ((2*s-j+1)*j/2+i-j);
66 }
67 
68 
69 #undef __FUNCT__
70 #define __FUNCT__ "TSEvaluateStep_EIMEX"
71 static PetscErrorCode TSEvaluateStep_EIMEX(TS ts,PetscInt order,Vec X,PetscBool *done)
72 {
73   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
74   const PetscInt  ns = ext->nstages;
75   PetscErrorCode ierr;
76   PetscFunctionBegin;
77   ierr = VecCopy(ext->T[Map(ext->row_ind,ext->col_ind,ns)],X);CHKERRQ(ierr);
78   PetscFunctionReturn(0);
79 }
80 
81 
82 #undef __FUNCT__
83 #define __FUNCT__ "TSStage_EIMEX"
84 static PetscErrorCode TSStage_EIMEX(TS ts,PetscInt istage)
85 {
86   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
87   PetscReal       h;
88   Vec             Y=ext->Y, Z=ext->Z;
89   SNES            snes;
90   TSAdapt         adapt;
91   PetscInt        i,its,lits;
92   PetscBool       accept;
93   PetscErrorCode  ierr;
94 
95   PetscFunctionBegin;
96   ierr = TSGetSNES(ts,&snes);CHKERRQ(ierr);
97   h = ts->time_step/ext->N[istage];/* step size for the istage-th stage */
98   ext->shift = 1./h;
99   ierr = SNESSetLagJacobian(snes,-2);CHKERRQ(ierr); /* Recompute the Jacobian on this solve, but not again */
100   ierr = VecCopy(ext->VecSolPrev,Y);CHKERRQ(ierr); /* Take the previous solution as intial step */
101 
102   for(i=0; i<ext->N[istage]; i++){
103     ext->ctime = ts->ptime + h*i;
104     ierr = VecCopy(Y,Z);CHKERRQ(ierr);/* Save the solution of the previous substep */
105     ierr = SNESSolve(snes,NULL,Y);CHKERRQ(ierr);
106     ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr);
107     ierr = SNESGetLinearSolveIterations(snes,&lits);CHKERRQ(ierr);
108     ts->snes_its += its; ts->ksp_its += lits;
109     ierr = TSGetAdapt(ts,&adapt);CHKERRQ(ierr);
110     ierr = TSAdaptCheckStage(adapt,ts,&accept);CHKERRQ(ierr);
111   }
112 
113   PetscFunctionReturn(0);
114 }
115 
116 
117 #undef __FUNCT__
118 #define __FUNCT__ "TSStep_EIMEX"
119 static PetscErrorCode TSStep_EIMEX(TS ts)
120 {
121   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
122   const PetscInt  ns = ext->nstages;
123   Vec             *T=ext->T, Y=ext->Y;
124 
125   SNES            snes;
126   PetscInt        i,j;
127   PetscBool       accept = PETSC_FALSE;
128   PetscErrorCode  ierr;
129   PetscReal       alpha,local_error;
130   PetscFunctionBegin;
131 
132   ierr = TSGetSNES(ts,&snes);CHKERRQ(ierr);
133   ierr = SNESSetType(snes,"ksponly"); CHKERRQ(ierr);
134   ext->status = TS_STEP_INCOMPLETE;
135 
136   ierr = VecCopy(ts->vec_sol,ext->VecSolPrev);CHKERRQ(ierr);
137 
138   /* Apply n_j steps of the base method to obtain solutions of T(j,1),1<=j<=s */
139   for(j=0; j<ns; j++){
140         ierr = TSStage_EIMEX(ts,j);CHKERRQ(ierr);
141         ierr = VecCopy(Y,T[j]); CHKERRQ(ierr);
142   }
143 
144   for(i=1;i<ns;i++){
145     for(j=i;j<ns;j++){
146       alpha = -(PetscReal)ext->N[j]/ext->N[j-i];
147       ierr  = VecAXPBYPCZ(T[Map(j,i,ns)],alpha,1.0,0,T[Map(j,i-1,ns)],T[Map(j-1,i-1,ns)]);/* T[j][i]=alpha*T[j][i-1]+T[j-1][i-1] */
148       alpha = 1.0/(1.0 + alpha);
149       ierr  = VecScale(T[Map(j,i,ns)],alpha);CHKERRQ(ierr);
150     }
151   }
152 
153   ierr = TSEvaluateStep(ts,ns,ts->vec_sol,NULL);CHKERRQ(ierr);/* update ts solution */
154 
155   if (ext->ord_adapt && ext->nstages < ext->max_rows){
156     accept = PETSC_FALSE;
157     while(!accept && ext->nstages < ext->max_rows){
158       ierr = TSErrorNormWRMS(ts,T[Map(ext->nstages-1,ext->nstages-2,ext->nstages)],&local_error);CHKERRQ(ierr);
159       accept = (local_error < 1.0)? PETSC_TRUE : PETSC_FALSE;
160 
161       if (!accept){/* add one more stage */
162         ierr = TSStage_EIMEX(ts,ext->nstages);CHKERRQ(ierr);
163         ext->nstages++; ext->row_ind++; ext->col_ind++;
164         /* T table need to be recycled */
165         ierr = VecDuplicateVecs(ts->vec_sol,(1+ext->nstages)*ext->nstages/2,&ext->T);CHKERRQ(ierr);
166         for(i=0; i<ext->nstages-1; i++){
167           for(j=0; j<=i; j++){
168             ierr = VecCopy(T[Map(i,j,ext->nstages-1)],ext->T[Map(i,j,ext->nstages)]);CHKERRQ(ierr);
169           }
170         }
171         ierr = VecDestroyVecs(ext->nstages*(ext->nstages-1)/2,&T);CHKERRQ(ierr);
172         T = ext->T; /* reset the pointer */
173         /* recycling finished, store the new solution */
174         ierr = VecCopy(Y,T[ext->nstages-1]); CHKERRQ(ierr);
175         /* extrapolation for the newly added stage */
176         for(i=1;i<ext->nstages;i++){
177           alpha = -(PetscReal)ext->N[ext->nstages-1]/ext->N[ext->nstages-1-i];
178           ierr  = VecAXPBYPCZ(T[Map(ext->nstages-1,i,ext->nstages)],alpha,1.0,0,T[Map(ext->nstages-1,i-1,ext->nstages)],T[Map(ext->nstages-1-1,i-1,ext->nstages)]);/* T[ext->nstages-1][i]=alpha*T[ext->nstages-1][i-1]+T[ext->nstages-1-1][i-1] */
179           alpha = 1.0/(1.0 + alpha);
180           ierr  = VecScale(T[Map(ext->nstages-1,i,ext->nstages)],alpha);CHKERRQ(ierr);
181         }
182         /* update ts solution */
183         ierr = TSEvaluateStep(ts,ext->nstages,ts->vec_sol,NULL);CHKERRQ(ierr);
184       }/* end if !accept */
185     }/* end while */
186 
187     if (ext->nstages == ext->max_rows){
188       ierr = PetscInfo(ts,"Max number of rows has been used\n");CHKERRQ(ierr);
189     }
190   }/* end if ext->ord_adapt */
191 
192   ts->ptime += ts->time_step;
193   ts->steps++;
194   ext->status = TS_STEP_COMPLETE;
195 
196   if (ext->status != TS_STEP_COMPLETE && !ts->reason) ts->reason = TS_DIVERGED_STEP_REJECTED;
197   PetscFunctionReturn(0);
198 }
199 
200 /* cubic Hermit spline */
201 #undef __FUNCT__
202 #define __FUNCT__ "TSInterpolate_EIMEX"
203 static PetscErrorCode TSInterpolate_EIMEX(TS ts,PetscReal itime,Vec X)
204 {
205   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
206   PetscReal      t,a,b;
207   Vec            Y0=ext->VecSolPrev,Y1=ext->Y,
208                          Ydot=ext->Ydot,YdotI=ext->YdotI;
209   const PetscReal h = ts->time_step_prev;
210   PetscErrorCode ierr;
211   PetscFunctionBegin;
212   t = (itime -ts->ptime + h)/h;
213   /* YdotI = -f(x)-g(x) */
214 
215   ierr = VecZeroEntries(Ydot);CHKERRQ(ierr);
216   ierr = TSComputeIFunction(ts,ts->ptime-h,Y0,Ydot,YdotI,PETSC_FALSE);CHKERRQ(ierr);
217 
218   a    = 2.0*t*t*t - 3.0*t*t + 1.0;
219   b    = -(t*t*t - 2.0*t*t + t)*h;
220   ierr = VecAXPBYPCZ(X,a,b,0.0,Y0,YdotI);CHKERRQ(ierr);
221 
222   ierr = TSComputeIFunction(ts,ts->ptime,Y1,Ydot,YdotI,PETSC_FALSE);CHKERRQ(ierr);
223   a    = -2.0*t*t*t+3.0*t*t;
224   b    = -(t*t*t - t*t)*h;
225   ierr = VecAXPBYPCZ(X,a,b,1.0,Y1,YdotI);CHKERRQ(ierr);
226 
227   PetscFunctionReturn(0);
228 }
229 
230 
231 #undef __FUNCT__
232 #define __FUNCT__ "TSReset_EIMEX"
233 static PetscErrorCode TSReset_EIMEX(TS ts)
234 {
235   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
236   PetscInt        ns;
237   PetscErrorCode  ierr;
238 
239   PetscFunctionBegin;
240   ns = ext->nstages;
241   ierr = VecDestroyVecs((1+ns)*ns/2,&ext->T);CHKERRQ(ierr);
242   ierr = VecDestroy(&ext->Y);CHKERRQ(ierr);
243   ierr = VecDestroy(&ext->Z);CHKERRQ(ierr);
244   ierr = VecDestroy(&ext->YdotRHS);CHKERRQ(ierr);
245   ierr = VecDestroy(&ext->YdotI);CHKERRQ(ierr);
246   ierr = VecDestroy(&ext->Ydot);CHKERRQ(ierr);
247   ierr = VecDestroy(&ext->VecSolPrev);CHKERRQ(ierr);
248   ierr = PetscFree(ext->N);CHKERRQ(ierr);
249   PetscFunctionReturn(0);
250 }
251 
252 #undef __FUNCT__
253 #define __FUNCT__ "TSDestroy_EIMEX"
254 static PetscErrorCode TSDestroy_EIMEX(TS ts)
255 {
256   PetscErrorCode  ierr;
257 
258   PetscFunctionBegin;
259   ierr = TSReset_EIMEX(ts);CHKERRQ(ierr);
260   ierr = PetscFree(ts->data);CHKERRQ(ierr);
261   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetMaxRows_C",NULL);CHKERRQ(ierr);
262   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetRowCol_C",NULL);CHKERRQ(ierr);
263   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetOrdAdapt_C",NULL);CHKERRQ(ierr);
264 
265   PetscFunctionReturn(0);
266 }
267 
268 
269 #undef __FUNCT__
270 #define __FUNCT__ "TSEIMEXGetVecs"
271 static PetscErrorCode TSEIMEXGetVecs(TS ts,DM dm,Vec *Z,Vec *Ydot,Vec *YdotI, Vec *YdotRHS)
272 {
273   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
274   PetscErrorCode ierr;
275 
276   PetscFunctionBegin;
277   if (Z) {
278     if (dm && dm != ts->dm) {
279       ierr = DMGetNamedGlobalVector(dm,"TSEIMEX_Z",Z);CHKERRQ(ierr);
280     } else *Z = ext->Z;
281   }
282   if (Ydot) {
283     if (dm && dm != ts->dm) {
284       ierr = DMGetNamedGlobalVector(dm,"TSEIMEX_Ydot",Ydot);CHKERRQ(ierr);
285     } else *Ydot = ext->Ydot;
286   }
287   if (YdotI) {
288     if (dm && dm != ts->dm) {
289       ierr = DMGetNamedGlobalVector(dm,"TSEIMEX_YdotI",YdotI);CHKERRQ(ierr);
290     } else *YdotI = ext->YdotI;
291   }
292   if (YdotRHS) {
293     if (dm && dm != ts->dm) {
294       ierr = DMGetNamedGlobalVector(dm,"TSEIMEX_YdotRHS",YdotRHS);CHKERRQ(ierr);
295     } else *YdotRHS = ext->YdotRHS;
296   }
297   PetscFunctionReturn(0);
298 }
299 
300 
301 #undef __FUNCT__
302 #define __FUNCT__ "TSEIMEXRestoreVecs"
303 static PetscErrorCode TSEIMEXRestoreVecs(TS ts,DM dm,Vec *Z,Vec *Ydot,Vec *YdotI,Vec *YdotRHS)
304 {
305   PetscErrorCode ierr;
306 
307   PetscFunctionBegin;
308   if (Z) {
309     if (dm && dm != ts->dm) {
310       ierr = DMRestoreNamedGlobalVector(dm,"TSEIMEX_Z",Z);CHKERRQ(ierr);
311     }
312   }
313   if (Ydot) {
314     if (dm && dm != ts->dm) {
315       ierr = DMRestoreNamedGlobalVector(dm,"TSEIMEX_Ydot",Ydot);CHKERRQ(ierr);
316     }
317   }
318   if (YdotI) {
319     if (dm && dm != ts->dm) {
320       ierr = DMRestoreNamedGlobalVector(dm,"TSEIMEX_YdotI",YdotI);CHKERRQ(ierr);
321     }
322   }
323   if (YdotRHS) {
324     if (dm && dm != ts->dm) {
325       ierr = DMRestoreNamedGlobalVector(dm,"TSEIMEX_YdotRHS",YdotRHS);CHKERRQ(ierr);
326     }
327   }
328   PetscFunctionReturn(0);
329 }
330 
331 
332 /*
333   This defines the nonlinear equation that is to be solved with SNES
334   Fn[t0+Theta*dt, U, (U-U0)*shift] = 0
335   In the case of Backward Euler, Fn = (U-U0)/h-g(t1,U))
336   Since FormIFunction calculates G = ydot - g(t,y), ydot will be set to (U-U0)/h
337 */
338 #undef __FUNCT__
339 #define __FUNCT__ "SNESTSFormFunction_EIMEX"
340 static PetscErrorCode SNESTSFormFunction_EIMEX(SNES snes,Vec X,Vec G,TS ts)
341 {
342   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
343   PetscErrorCode  ierr;
344   Vec             Ydot,Z;
345   DM              dm,dmsave;
346 
347   PetscFunctionBegin;
348   ierr = VecZeroEntries(G);CHKERRQ(ierr);
349 
350   ierr = SNESGetDM(snes,&dm);CHKERRQ(ierr);
351   ierr = TSEIMEXGetVecs(ts,dm,&Z,&Ydot,NULL,NULL);CHKERRQ(ierr);
352   ierr = VecZeroEntries(Ydot);CHKERRQ(ierr);
353   dmsave = ts->dm;
354   ts->dm = dm;
355   ierr = TSComputeIFunction(ts,ext->ctime,X,Ydot,G,PETSC_FALSE);CHKERRQ(ierr);
356   /* PETSC_FALSE indicates non-imex, adding explicit RHS to the implicit I function.  */
357   ierr = VecCopy(G,Ydot);CHKERRQ(ierr);
358   ts->dm = dmsave;
359   ierr = TSEIMEXRestoreVecs(ts,dm,&Z,&Ydot,NULL,NULL);CHKERRQ(ierr);
360 
361   PetscFunctionReturn(0);
362 }
363 
364 /*
365  This defined the Jacobian matrix for SNES. Jn = (I/h-g'(t,y))
366  */
367 #undef __FUNCT__
368 #define __FUNCT__ "SNESTSFormJacobian_EIMEX"
369 static PetscErrorCode SNESTSFormJacobian_EIMEX(SNES snes,Vec X,Mat A,Mat B,TS ts)
370 {
371   TS_EIMEX        *ext = (TS_EIMEX*)ts->data;
372   Vec             Ydot;
373   PetscErrorCode  ierr;
374   DM              dm,dmsave;
375   PetscFunctionBegin;
376   ierr = SNESGetDM(snes,&dm);CHKERRQ(ierr);
377   ierr = TSEIMEXGetVecs(ts,dm,NULL,&Ydot,NULL,NULL);CHKERRQ(ierr);
378   /*  ierr = VecZeroEntries(Ydot);CHKERRQ(ierr); */
379   /* ext->Ydot have already been computed in SNESTSFormFunction_EIMEX (SNES guarantees this) */
380   dmsave = ts->dm;
381   ts->dm = dm;
382   ierr = TSComputeIJacobian(ts,ts->ptime,X,Ydot,ext->shift,A,B,PETSC_TRUE);CHKERRQ(ierr);
383   ts->dm = dmsave;
384   ierr = TSEIMEXRestoreVecs(ts,dm,NULL,&Ydot,NULL,NULL);CHKERRQ(ierr);
385   PetscFunctionReturn(0);
386 }
387 
388 #undef __FUNCT__
389 #define __FUNCT__ "DMCoarsenHook_TSEIMEX"
390 static PetscErrorCode DMCoarsenHook_TSEIMEX(DM fine,DM coarse,void *ctx)
391 {
392 
393   PetscFunctionBegin;
394   PetscFunctionReturn(0);
395 }
396 
397 #undef __FUNCT__
398 #define __FUNCT__ "DMRestrictHook_TSEIMEX"
399 static PetscErrorCode DMRestrictHook_TSEIMEX(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse,void *ctx)
400 {
401   TS ts = (TS)ctx;
402   PetscErrorCode ierr;
403   Vec Z,Z_c;
404 
405   PetscFunctionBegin;
406   ierr = TSEIMEXGetVecs(ts,fine,&Z,NULL,NULL,NULL);CHKERRQ(ierr);
407   ierr = TSEIMEXGetVecs(ts,coarse,&Z_c,NULL,NULL,NULL);CHKERRQ(ierr);
408   ierr = MatRestrict(restrct,Z,Z_c);CHKERRQ(ierr);
409   ierr = VecPointwiseMult(Z_c,rscale,Z_c);CHKERRQ(ierr);
410   ierr = TSEIMEXRestoreVecs(ts,fine,&Z,NULL,NULL,NULL);CHKERRQ(ierr);
411   ierr = TSEIMEXRestoreVecs(ts,coarse,&Z_c,NULL,NULL,NULL);CHKERRQ(ierr);
412   PetscFunctionReturn(0);
413 }
414 
415 
416 #undef __FUNCT__
417 #define __FUNCT__ "TSSetUp_EIMEX"
418 static PetscErrorCode TSSetUp_EIMEX(TS ts)
419 {
420   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
421   PetscErrorCode ierr;
422   DM             dm;
423 
424   PetscFunctionBegin;
425   if (!ext->N){ /* ext->max_rows not set */
426     ierr = TSEIMEXSetMaxRows(ts,TSEIMEXDefault);CHKERRQ(ierr);
427   }
428   if(-1 == ext->row_ind && -1 == ext->col_ind){
429         ierr = TSEIMEXSetRowCol(ts,ext->max_rows,ext->max_rows);CHKERRQ(ierr);
430   } else{/* ext->row_ind and col_ind already set */
431     if (ext->ord_adapt){
432       ierr = PetscInfo(ts,"Order adaptivity is enabled and TSEIMEXSetRowCol or -ts_eimex_row_col option will take no effect\n");CHKERRQ(ierr);
433     }
434   }
435 
436   if(ext->ord_adapt){
437     ext->nstages = 2; /* Start with the 2-stage scheme */
438     ierr = TSEIMEXSetRowCol(ts,ext->nstages,ext->nstages);CHKERRQ(ierr);
439   } else{
440     ext->nstages = ext->max_rows; /* by default nstages is the same as max_rows, this can be changed by setting order adaptivity */
441   }
442 
443   ierr = VecDuplicateVecs(ts->vec_sol,(1+ext->nstages)*ext->nstages/2,&ext->T);CHKERRQ(ierr);/* full T table */
444   ierr = VecDuplicate(ts->vec_sol,&ext->YdotI);CHKERRQ(ierr);
445   ierr = VecDuplicate(ts->vec_sol,&ext->YdotRHS);CHKERRQ(ierr);
446   ierr = VecDuplicate(ts->vec_sol,&ext->Ydot);CHKERRQ(ierr);
447   ierr = VecDuplicate(ts->vec_sol,&ext->VecSolPrev);CHKERRQ(ierr);
448   ierr = VecDuplicate(ts->vec_sol,&ext->Y);CHKERRQ(ierr);
449   ierr = VecDuplicate(ts->vec_sol,&ext->Z);CHKERRQ(ierr);
450   ierr = TSGetDM(ts,&dm);CHKERRQ(ierr);
451   if (dm) {
452     ierr = DMCoarsenHookAdd(dm,DMCoarsenHook_TSEIMEX,DMRestrictHook_TSEIMEX,ts);CHKERRQ(ierr);
453   }
454   PetscFunctionReturn(0);
455 }
456 
457 #undef __FUNCT__
458 #define __FUNCT__ "TSSetFromOptions_EIMEX"
459 static PetscErrorCode TSSetFromOptions_EIMEX(TS ts)
460 {
461   TS_EIMEX       *ext = (TS_EIMEX*)ts->data;
462   PetscErrorCode ierr;
463   PetscInt       tindex[2];
464   PetscInt       np = 2, nrows=TSEIMEXDefault;
465 
466   PetscFunctionBegin;
467   tindex[0] = TSEIMEXDefault;
468   tindex[1] = TSEIMEXDefault;
469   ierr = PetscOptionsHead("EIMEX ODE solver options");CHKERRQ(ierr);
470   {
471     PetscBool flg;
472     ierr = PetscOptionsInt("-ts_eimex_max_rows","Define the maximum number of rows used","TSEIMEXSetMaxRows",nrows,&nrows,&flg);CHKERRQ(ierr); /* default value 3 */
473     if(flg){
474       ierr = TSEIMEXSetMaxRows(ts,nrows);CHKERRQ(ierr);
475     }
476     ierr = PetscOptionsIntArray("-ts_eimex_row_col","Return the specific term in the T table","TSEIMEXSetRowCol",tindex,&np,&flg);CHKERRQ(ierr);
477     if(flg){
478       ierr = TSEIMEXSetRowCol(ts,tindex[0],tindex[1]);CHKERRQ(ierr);
479     }
480     ierr = PetscOptionsBool("-ts_eimex_order_adapt","Solve the problem with adaptive order","TSEIMEXSetOrdAdapt",ext->ord_adapt,&ext->ord_adapt,NULL);CHKERRQ(ierr);
481     ierr = SNESSetFromOptions(ts->snes);CHKERRQ(ierr);
482   }
483   ierr = PetscOptionsTail();CHKERRQ(ierr);
484   PetscFunctionReturn(0);
485 }
486 
487 #undef __FUNCT__
488 #define __FUNCT__ "TSView_EIMEX"
489 static PetscErrorCode TSView_EIMEX(TS ts,PetscViewer viewer)
490 {
491   /*  TS_EIMEX         *ext = (TS_EIMEX*)ts->data; */
492   PetscBool        iascii;
493   PetscErrorCode   ierr;
494 
495   PetscFunctionBegin;
496   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
497   if (iascii) {
498     ierr = PetscViewerASCIIPrintf(viewer,"  EIMEX\n");CHKERRQ(ierr);
499   }
500   ierr = SNESView(ts->snes,viewer);CHKERRQ(ierr);
501   PetscFunctionReturn(0);
502 }
503 
504 
505 #undef __FUNCT__
506 #define __FUNCT__ "TSEIMEXSetMaxRows"
507 /*@C
508   TSEIMEXSetMaxRows - Set the maximum number of rows for EIMEX schemes
509 
510   Logically collective
511 
512   Input Parameter:
513 +  ts - timestepping context
514 -  nrows - maximum number of rows
515 
516   Level: intermediate
517 
518 .seealso: TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt(), TSEIMEX
519 @*/
520 PetscErrorCode TSEIMEXSetMaxRows(TS ts, PetscInt nrows)
521 {
522   PetscErrorCode ierr;
523   PetscFunctionBegin;
524   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
525   ierr = PetscTryMethod(ts,"TSEIMEXSetMaxRows_C",(TS,PetscInt),(ts,nrows));CHKERRQ(ierr);
526   PetscFunctionReturn(0);
527 }
528 
529 
530 #undef __FUNCT__
531 #define __FUNCT__ "TSEIMEXSetRowCol"
532 /*@C
533   TSEIMEXSetRowCol - Set the type index in the T table for the return value
534 
535   Logically collective
536 
537   Input Parameter:
538 +  ts - timestepping context
539 -  tindex - index in the T table
540 
541   Level: intermediate
542 
543 .seealso: TSEIMEXSetMaxRows(), TSEIMEXSetOrdAdapt(), TSEIMEX
544 @*/
545 PetscErrorCode TSEIMEXSetRowCol(TS ts, PetscInt row, PetscInt col)
546 {
547   PetscErrorCode ierr;
548   PetscFunctionBegin;
549   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
550   ierr = PetscTryMethod(ts,"TSEIMEXSetRowCol_C",(TS,PetscInt, PetscInt),(ts,row,col));CHKERRQ(ierr);
551   PetscFunctionReturn(0);
552 }
553 
554 
555 #undef __FUNCT__
556 #define __FUNCT__ "TSEIMEXSetOrdAdapt"
557 /*@C
558   TSEIMEXSetOrdAdapt - Set the order adaptativity
559 
560   Logically collective
561 
562   Input Parameter:
563 +  ts - timestepping context
564 -  tindex - index in the T table
565 
566   Level: intermediate
567 
568 .seealso: TSEIMEXSetRowCol(), TSEIMEXSetOrdAdapt(), TSEIMEX
569 @*/
570 PetscErrorCode TSEIMEXSetOrdAdapt(TS ts, PetscBool flg)
571 {
572   PetscErrorCode ierr;
573   PetscFunctionBegin;
574   PetscValidHeaderSpecific(ts,TS_CLASSID,1);
575   ierr = PetscTryMethod(ts,"TSEIMEXSetOrdAdapt_C",(TS,PetscBool),(ts,flg));CHKERRQ(ierr);
576   PetscFunctionReturn(0);
577 }
578 
579 
580 #undef __FUNCT__
581 #define __FUNCT__ "TSEIMEXSetMaxRows_EIMEX"
582 static PetscErrorCode TSEIMEXSetMaxRows_EIMEX(TS ts,PetscInt nrows)
583 {
584   TS_EIMEX *ext = (TS_EIMEX*)ts->data;
585   PetscErrorCode ierr;
586   PetscInt       i;
587 
588   PetscFunctionBegin;
589   if (nrows < 0 || nrows > 100) SETERRQ1(((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Max number of rows (current value %D) should be an integer number between 1 and 100\n",nrows);
590   ierr = PetscFree(ext->N);CHKERRQ(ierr);
591   ext->max_rows = nrows;
592   ierr = PetscMalloc1(nrows,&ext->N);CHKERRQ(ierr);
593   for(i=0;i<nrows;i++) ext->N[i]=i+1;
594   PetscFunctionReturn(0);
595 }
596 
597 #undef __FUNCT__
598 #define __FUNCT__ "TSEIMEXSetRowCol_EIMEX"
599 static PetscErrorCode TSEIMEXSetRowCol_EIMEX(TS ts,PetscInt row,PetscInt col)
600 {
601   TS_EIMEX *ext = (TS_EIMEX*)ts->data;
602 
603   PetscFunctionBegin;
604   if (row < 1 || col < 1) SETERRQ2(((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The row or column index (current value %d,%d) should not be less than 1 \n",row,col);
605   if (row > ext->max_rows || col > ext->max_rows) SETERRQ3(((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The row or column index (current value %d,%d) exceeds the maximum number of rows %d\n",row,col,ext->max_rows);
606   if (col > row) SETERRQ2(((PetscObject)ts)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The column index (%d) exceeds the row index (%d)\n",col,row);
607 
608   ext->row_ind = row - 1;
609   ext->col_ind = col - 1; /* Array index in C starts from 0 */
610   PetscFunctionReturn(0);
611 }
612 
613 #undef __FUNCT__
614 #define __FUNCT__ "TSEIMEXSetOrdAdapt_EIMEX"
615 static PetscErrorCode TSEIMEXSetOrdAdapt_EIMEX(TS ts,PetscBool flg)
616 {
617   TS_EIMEX *ext = (TS_EIMEX*)ts->data;
618   PetscFunctionBegin;
619   ext->ord_adapt = flg;
620   PetscFunctionReturn(0);
621 }
622 
623 /* ------------------------------------------------------------ */
624 /*MC
625       TSEIMEX - ODE solver using extrapolated IMEX schemes
626   These methods are intended for problems with well-separated time scales, especially when a slow scale is strongly nonlinear such that it is expensive to solve with a fully implicit method. The user should provide the stiff part of the equation using TSSetIFunction() and the non-stiff part with TSSetRHSFunction().
627 
628    Notes:
629   The default is a 3-stage scheme, it can be changed with TSEIMEXSetMaxRows() or -ts_eimex_max_rows
630 
631   This method currently only works with ODE, for which the stiff part G(t,X,Xdot) has the form Xdot + Ghat(t,X).
632 
633   Level: beginner
634 
635 .seealso:  TSCreate(), TS
636 M*/
637 #undef __FUNCT__
638 #define __FUNCT__ "TSCreate_EIMEX"
639 PETSC_EXTERN PetscErrorCode TSCreate_EIMEX(TS ts)
640 {
641   TS_EIMEX       *ext;
642   PetscErrorCode ierr;
643 
644   PetscFunctionBegin;
645 
646   ts->ops->reset          = TSReset_EIMEX;
647   ts->ops->destroy        = TSDestroy_EIMEX;
648   ts->ops->view           = TSView_EIMEX;
649   ts->ops->setup          = TSSetUp_EIMEX;
650   ts->ops->step           = TSStep_EIMEX;
651   ts->ops->interpolate    = TSInterpolate_EIMEX;
652   ts->ops->evaluatestep   = TSEvaluateStep_EIMEX;
653   ts->ops->setfromoptions = TSSetFromOptions_EIMEX;
654   ts->ops->snesfunction   = SNESTSFormFunction_EIMEX;
655   ts->ops->snesjacobian   = SNESTSFormJacobian_EIMEX;
656 
657   ierr = PetscNewLog(ts,&ext);CHKERRQ(ierr);
658   ts->data = (void*)ext;
659 
660   ext->ord_adapt = PETSC_FALSE; /* By default, no order adapativity */
661   ext->row_ind   = -1;
662   ext->col_ind   = -1;
663   ext->max_rows  = TSEIMEXDefault;
664   ext->nstages   = TSEIMEXDefault;
665 
666   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetMaxRows_C", TSEIMEXSetMaxRows_EIMEX);CHKERRQ(ierr);
667   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetRowCol_C",  TSEIMEXSetRowCol_EIMEX);CHKERRQ(ierr);
668   ierr = PetscObjectComposeFunction((PetscObject)ts,"TSEIMEXSetOrdAdapt_C",TSEIMEXSetOrdAdapt_EIMEX);CHKERRQ(ierr);
669   PetscFunctionReturn(0);
670 }
671