17cb94ee6SHong Zhang /* 2db268bfaSHong Zhang Provides a PETSc interface to SUNDIALS/CVODE solver. 37cb94ee6SHong Zhang The interface to PVODE (old version of CVODE) was originally contributed 47cb94ee6SHong Zhang by Liyang Xu. It has been redone by Hong Zhang and Dinesh Kaushik. 528adb3f7SHong Zhang 628adb3f7SHong Zhang Reference: sundials-2.4.0/examples/cvode/parallel/cvDiurnal_kry_p.c 77cb94ee6SHong Zhang */ 856a740aaSHong Zhang #include "sundials.h" /*I "petscts.h" I*/ 97cb94ee6SHong Zhang 107cb94ee6SHong Zhang /* 117cb94ee6SHong Zhang TSPrecond_Sundials - function that we provide to SUNDIALS to 127cb94ee6SHong Zhang evaluate the preconditioner. 137cb94ee6SHong Zhang */ 147cb94ee6SHong Zhang #undef __FUNCT__ 157cb94ee6SHong Zhang #define __FUNCT__ "TSPrecond_Sundials" 167cb94ee6SHong Zhang PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy, 177cb94ee6SHong Zhang booleantype jok,booleantype *jcurPtr, 187cb94ee6SHong Zhang realtype _gamma,void *P_data, 197cb94ee6SHong Zhang N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) 207cb94ee6SHong Zhang { 217cb94ee6SHong Zhang TS ts = (TS) P_data; 227cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 237cb94ee6SHong Zhang PC pc = cvode->pc; 247cb94ee6SHong Zhang PetscErrorCode ierr; 25089b2837SJed Brown Mat Jac; 267cb94ee6SHong Zhang Vec yy = cvode->w1; 277cb94ee6SHong Zhang PetscScalar one = 1.0,gm; 287cb94ee6SHong Zhang MatStructure str = DIFFERENT_NONZERO_PATTERN; 297cb94ee6SHong Zhang PetscScalar *y_data; 307cb94ee6SHong Zhang 317cb94ee6SHong Zhang PetscFunctionBegin; 32089b2837SJed Brown ierr = TSGetRHSJacobian(ts,PETSC_NULL,&Jac,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr); 337cb94ee6SHong Zhang /* This allows us to construct preconditioners in-place if we like */ 347cb94ee6SHong Zhang ierr = MatSetUnfactored(Jac);CHKERRQ(ierr); 357cb94ee6SHong Zhang 367cb94ee6SHong Zhang /* jok - TRUE means reuse current Jacobian else recompute Jacobian */ 377cb94ee6SHong Zhang if (jok) { 387cb94ee6SHong Zhang ierr = MatCopy(cvode->pmat,Jac,str);CHKERRQ(ierr); 397cb94ee6SHong Zhang *jcurPtr = FALSE; 407cb94ee6SHong Zhang } else { 417cb94ee6SHong Zhang /* make PETSc vector yy point to SUNDIALS vector y */ 427cb94ee6SHong Zhang y_data = (PetscScalar *) N_VGetArrayPointer(y); 437cb94ee6SHong Zhang ierr = VecPlaceArray(yy,y_data); CHKERRQ(ierr); 444ac7836bSHong Zhang 457cb94ee6SHong Zhang /* compute the Jacobian */ 467cb94ee6SHong Zhang ierr = TSComputeRHSJacobian(ts,ts->ptime,yy,&Jac,&Jac,&str);CHKERRQ(ierr); 477cb94ee6SHong Zhang ierr = VecResetArray(yy); CHKERRQ(ierr); 484ac7836bSHong Zhang 497cb94ee6SHong Zhang /* copy the Jacobian matrix */ 507cb94ee6SHong Zhang if (!cvode->pmat) { 517cb94ee6SHong Zhang ierr = MatDuplicate(Jac,MAT_COPY_VALUES,&cvode->pmat);CHKERRQ(ierr); 527cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->pmat);CHKERRQ(ierr); 532c823083SHong Zhang } else { 547cb94ee6SHong Zhang ierr = MatCopy(Jac,cvode->pmat,str);CHKERRQ(ierr); 557cb94ee6SHong Zhang } 567cb94ee6SHong Zhang *jcurPtr = TRUE; 577cb94ee6SHong Zhang } 587cb94ee6SHong Zhang 597cb94ee6SHong Zhang /* construct I-gamma*Jac */ 607cb94ee6SHong Zhang gm = -_gamma; 617cb94ee6SHong Zhang ierr = MatScale(Jac,gm);CHKERRQ(ierr); 627cb94ee6SHong Zhang ierr = MatShift(Jac,one);CHKERRQ(ierr); 637cb94ee6SHong Zhang 647cb94ee6SHong Zhang ierr = PCSetOperators(pc,Jac,Jac,str);CHKERRQ(ierr); 657cb94ee6SHong Zhang PetscFunctionReturn(0); 667cb94ee6SHong Zhang } 677cb94ee6SHong Zhang 687cb94ee6SHong Zhang /* 697cb94ee6SHong Zhang TSPSolve_Sundials - routine that we provide to Sundials that applies the preconditioner. 707cb94ee6SHong Zhang */ 717cb94ee6SHong Zhang #undef __FUNCT__ 727cb94ee6SHong Zhang #define __FUNCT__ "TSPSolve_Sundials" 734ac7836bSHong Zhang PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, 744ac7836bSHong Zhang realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp) 757cb94ee6SHong Zhang { 767cb94ee6SHong Zhang TS ts = (TS) P_data; 777cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 787cb94ee6SHong Zhang PC pc = cvode->pc; 797cb94ee6SHong Zhang Vec rr = cvode->w1,zz = cvode->w2; 807cb94ee6SHong Zhang PetscErrorCode ierr; 817cb94ee6SHong Zhang PetscScalar *r_data,*z_data; 827cb94ee6SHong Zhang 837cb94ee6SHong Zhang PetscFunctionBegin; 847cb94ee6SHong Zhang /* Make the PETSc work vectors rr and zz point to the arrays in the SUNDIALS vectors r and z respectively*/ 857cb94ee6SHong Zhang r_data = (PetscScalar *) N_VGetArrayPointer(r); 867cb94ee6SHong Zhang z_data = (PetscScalar *) N_VGetArrayPointer(z); 877cb94ee6SHong Zhang ierr = VecPlaceArray(rr,r_data); CHKERRQ(ierr); 887cb94ee6SHong Zhang ierr = VecPlaceArray(zz,z_data); CHKERRQ(ierr); 894ac7836bSHong Zhang 907cb94ee6SHong Zhang /* Solve the Px=r and put the result in zz */ 917cb94ee6SHong Zhang ierr = PCApply(pc,rr,zz); CHKERRQ(ierr); 927cb94ee6SHong Zhang ierr = VecResetArray(rr); CHKERRQ(ierr); 937cb94ee6SHong Zhang ierr = VecResetArray(zz); CHKERRQ(ierr); 947cb94ee6SHong Zhang PetscFunctionReturn(0); 957cb94ee6SHong Zhang } 967cb94ee6SHong Zhang 977cb94ee6SHong Zhang /* 987cb94ee6SHong Zhang TSFunction_Sundials - routine that we provide to Sundials that applies the right hand side. 997cb94ee6SHong Zhang */ 1007cb94ee6SHong Zhang #undef __FUNCT__ 1017cb94ee6SHong Zhang #define __FUNCT__ "TSFunction_Sundials" 1024ac7836bSHong Zhang int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx) 1037cb94ee6SHong Zhang { 1047cb94ee6SHong Zhang TS ts = (TS) ctx; 1057adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)ts)->comm; 1067cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 1077cb94ee6SHong Zhang Vec yy = cvode->w1,yyd = cvode->w2; 1087cb94ee6SHong Zhang PetscScalar *y_data,*ydot_data; 1097cb94ee6SHong Zhang PetscErrorCode ierr; 1107cb94ee6SHong Zhang 1117cb94ee6SHong Zhang PetscFunctionBegin; 1125ff03cf7SDinesh Kaushik /* Make the PETSc work vectors yy and yyd point to the arrays in the SUNDIALS vectors y and ydot respectively*/ 1137cb94ee6SHong Zhang y_data = (PetscScalar *) N_VGetArrayPointer(y); 1147cb94ee6SHong Zhang ydot_data = (PetscScalar *) N_VGetArrayPointer(ydot); 1154ac7836bSHong Zhang ierr = VecPlaceArray(yy,y_data);CHKERRABORT(comm,ierr); 1164ac7836bSHong Zhang ierr = VecPlaceArray(yyd,ydot_data); CHKERRABORT(comm,ierr); 1174ac7836bSHong Zhang 1187cb94ee6SHong Zhang /* now compute the right hand side function */ 1197cb94ee6SHong Zhang ierr = TSComputeRHSFunction(ts,t,yy,yyd); CHKERRABORT(comm,ierr); 1207cb94ee6SHong Zhang ierr = VecResetArray(yy); CHKERRABORT(comm,ierr); 1217cb94ee6SHong Zhang ierr = VecResetArray(yyd); CHKERRABORT(comm,ierr); 1224ac7836bSHong Zhang PetscFunctionReturn(0); 1237cb94ee6SHong Zhang } 1247cb94ee6SHong Zhang 1257cb94ee6SHong Zhang /* 126*214bc6a2SJed Brown TSStep_Sundials - Calls Sundials to integrate the ODE. 1277cb94ee6SHong Zhang */ 1287cb94ee6SHong Zhang #undef __FUNCT__ 129*214bc6a2SJed Brown #define __FUNCT__ "TSStep_Sundials" 130*214bc6a2SJed Brown PetscErrorCode TSStep_Sundials(TS ts,int *steps,double *time) 1317cb94ee6SHong Zhang { 1327cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 1337cb94ee6SHong Zhang Vec sol = ts->vec_sol; 1347cb94ee6SHong Zhang PetscErrorCode ierr; 135186e87acSLisandro Dalcin PetscInt i,flag; 1369f94935aSHong Zhang long int its,nsteps; 1377cb94ee6SHong Zhang realtype t,tout; 1387cb94ee6SHong Zhang PetscScalar *y_data; 1397cb94ee6SHong Zhang void *mem; 1407cb94ee6SHong Zhang 1417cb94ee6SHong Zhang PetscFunctionBegin; 14216016685SHong Zhang mem = cvode->mem; 1437cb94ee6SHong Zhang tout = ts->max_time; 1447cb94ee6SHong Zhang ierr = VecGetArray(ts->vec_sol,&y_data);CHKERRQ(ierr); 1457cb94ee6SHong Zhang N_VSetArrayPointer((realtype *)y_data,cvode->y); 1467cb94ee6SHong Zhang ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr); 147186e87acSLisandro Dalcin 148186e87acSLisandro Dalcin for (i = 0; i < ts->max_steps; i++) { 1497cb94ee6SHong Zhang if (ts->ptime >= ts->max_time) break; 1503f2090d5SJed Brown ierr = TSPreStep(ts);CHKERRQ(ierr); 151186e87acSLisandro Dalcin 1522bfc04deSHong Zhang if (cvode->monitorstep) { 15328adb3f7SHong Zhang flag = CVode(mem,tout,cvode->y,&t,CV_ONE_STEP); 1542bfc04deSHong Zhang } else { 1552bfc04deSHong Zhang flag = CVode(mem,tout,cvode->y,&t,CV_NORMAL); 1562bfc04deSHong Zhang } 1579f94935aSHong Zhang 1589f94935aSHong Zhang if (flag){ /* display error message */ 1599f94935aSHong Zhang switch (flag){ 1609f94935aSHong Zhang case CV_ILL_INPUT: 1619f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ILL_INPUT"); 1629f94935aSHong Zhang break; 1639f94935aSHong Zhang case CV_TOO_CLOSE: 1649f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_CLOSE"); 1659f94935aSHong Zhang break; 1663c7fefeeSJed Brown case CV_TOO_MUCH_WORK: { 1679f94935aSHong Zhang PetscReal tcur; 1689f94935aSHong Zhang ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr); 1699f94935aSHong Zhang ierr = CVodeGetCurrentTime(mem,&tcur);CHKERRQ(ierr); 1709f94935aSHong Zhang SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_WORK. At t=%G, nsteps %D exceeds mxstep %D. Increase '-ts_max_steps <>' or modify TSSetDuration()",tcur,nsteps,ts->max_steps); 1713c7fefeeSJed Brown } break; 1729f94935aSHong Zhang case CV_TOO_MUCH_ACC: 1739f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_ACC"); 1749f94935aSHong Zhang break; 1759f94935aSHong Zhang case CV_ERR_FAILURE: 1769f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ERR_FAILURE"); 1779f94935aSHong Zhang break; 1789f94935aSHong Zhang case CV_CONV_FAILURE: 1799f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_CONV_FAILURE"); 1809f94935aSHong Zhang break; 1819f94935aSHong Zhang case CV_LINIT_FAIL: 1829f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LINIT_FAIL"); 1839f94935aSHong Zhang break; 1849f94935aSHong Zhang case CV_LSETUP_FAIL: 1859f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSETUP_FAIL"); 1869f94935aSHong Zhang break; 1879f94935aSHong Zhang case CV_LSOLVE_FAIL: 1889f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSOLVE_FAIL"); 1899f94935aSHong Zhang break; 1909f94935aSHong Zhang case CV_RHSFUNC_FAIL: 1919f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RHSFUNC_FAIL"); 1929f94935aSHong Zhang break; 1939f94935aSHong Zhang case CV_FIRST_RHSFUNC_ERR: 1949f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_FIRST_RHSFUNC_ERR"); 1959f94935aSHong Zhang break; 1969f94935aSHong Zhang case CV_REPTD_RHSFUNC_ERR: 1979f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_REPTD_RHSFUNC_ERR"); 1989f94935aSHong Zhang break; 1999f94935aSHong Zhang case CV_UNREC_RHSFUNC_ERR: 2009f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_UNREC_RHSFUNC_ERR"); 2019f94935aSHong Zhang break; 2029f94935aSHong Zhang case CV_RTFUNC_FAIL: 2039f94935aSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RTFUNC_FAIL"); 2049f94935aSHong Zhang break; 2059f94935aSHong Zhang default: 2069f94935aSHong Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, flag %d",flag); 2079f94935aSHong Zhang } 2089f94935aSHong Zhang } 2099f94935aSHong Zhang 2107cb94ee6SHong Zhang if (t > ts->max_time && cvode->exact_final_time) { 2117cb94ee6SHong Zhang /* interpolate to final requested time */ 2127cb94ee6SHong Zhang ierr = CVodeGetDky(mem,tout,0,cvode->y);CHKERRQ(ierr); 2137cb94ee6SHong Zhang t = tout; 2147cb94ee6SHong Zhang } 2157cb94ee6SHong Zhang 2167cb94ee6SHong Zhang /* copy the solution from cvode->y to cvode->update and sol */ 2177cb94ee6SHong Zhang ierr = VecPlaceArray(cvode->w1,y_data); CHKERRQ(ierr); 2187cb94ee6SHong Zhang ierr = VecCopy(cvode->w1,cvode->update);CHKERRQ(ierr); 2197cb94ee6SHong Zhang ierr = VecResetArray(cvode->w1); CHKERRQ(ierr); 2207cb94ee6SHong Zhang ierr = VecCopy(cvode->update,sol);CHKERRQ(ierr); 2217cb94ee6SHong Zhang ierr = CVodeGetNumNonlinSolvIters(mem,&its);CHKERRQ(ierr); 2224ac7836bSHong Zhang ierr = CVSpilsGetNumLinIters(mem, &its); 223186e87acSLisandro Dalcin ts->nonlinear_its = its; ts->linear_its = its; 224186e87acSLisandro Dalcin 225186e87acSLisandro Dalcin ts->time_step = t - ts->ptime; 226186e87acSLisandro Dalcin ts->ptime = t; 2277cb94ee6SHong Zhang ts->steps++; 228186e87acSLisandro Dalcin 2293f2090d5SJed Brown ierr = TSPostStep(ts);CHKERRQ(ierr); 2307cb94ee6SHong Zhang ierr = TSMonitor(ts,ts->steps,t,sol);CHKERRQ(ierr); 2317cb94ee6SHong Zhang } 2329f94935aSHong Zhang ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr); 233186e87acSLisandro Dalcin 2349f94935aSHong Zhang *steps = nsteps; 2357cb94ee6SHong Zhang *time = t; 2367cb94ee6SHong Zhang PetscFunctionReturn(0); 2377cb94ee6SHong Zhang } 2387cb94ee6SHong Zhang 2397cb94ee6SHong Zhang #undef __FUNCT__ 240277b19d0SLisandro Dalcin #define __FUNCT__ "TSReset_Sundials" 241277b19d0SLisandro Dalcin PetscErrorCode TSReset_Sundials(TS ts) 242277b19d0SLisandro Dalcin { 243277b19d0SLisandro Dalcin TS_Sundials *cvode = (TS_Sundials*)ts->data; 244277b19d0SLisandro Dalcin PetscErrorCode ierr; 245277b19d0SLisandro Dalcin 246277b19d0SLisandro Dalcin PetscFunctionBegin; 247277b19d0SLisandro Dalcin if (cvode->pc) {ierr = PCReset(cvode->pc);CHKERRQ(ierr);} 248d155d410SJed Brown ierr = MatDestroy(&cvode->pmat); 249d155d410SJed Brown ierr = VecDestroy(&cvode->update); 250d155d410SJed Brown ierr = VecDestroy(&cvode->func); 251d155d410SJed Brown ierr = VecDestroy(&cvode->rhs); 252d155d410SJed Brown ierr = VecDestroy(&cvode->w1); 253d155d410SJed Brown ierr = VecDestroy(&cvode->w2); 254277b19d0SLisandro Dalcin if (cvode->mem) {CVodeFree(&cvode->mem);} 255277b19d0SLisandro Dalcin PetscFunctionReturn(0); 256277b19d0SLisandro Dalcin } 257277b19d0SLisandro Dalcin 258277b19d0SLisandro Dalcin #undef __FUNCT__ 2597cb94ee6SHong Zhang #define __FUNCT__ "TSDestroy_Sundials" 2607cb94ee6SHong Zhang PetscErrorCode TSDestroy_Sundials(TS ts) 2617cb94ee6SHong Zhang { 2627cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 2637cb94ee6SHong Zhang PetscErrorCode ierr; 2647cb94ee6SHong Zhang 2657cb94ee6SHong Zhang PetscFunctionBegin; 266277b19d0SLisandro Dalcin ierr = TSReset_Sundials(ts);CHKERRQ(ierr); 267d155d410SJed Brown ierr = PCDestroy(&cvode->pc);CHKERRQ(ierr); 268a07356b8SSatish Balay ierr = MPI_Comm_free(&(cvode->comm_sundials));CHKERRQ(ierr); 269277b19d0SLisandro Dalcin ierr = PetscFree(ts->data);CHKERRQ(ierr); 2707cb94ee6SHong Zhang PetscFunctionReturn(0); 2717cb94ee6SHong Zhang } 2727cb94ee6SHong Zhang 2737cb94ee6SHong Zhang #undef __FUNCT__ 274*214bc6a2SJed Brown #define __FUNCT__ "TSSetUp_Sundials" 275*214bc6a2SJed Brown PetscErrorCode TSSetUp_Sundials(TS ts) 2767cb94ee6SHong Zhang { 2777cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 2787cb94ee6SHong Zhang PetscErrorCode ierr; 27916016685SHong Zhang PetscInt glosize,locsize,i,flag; 2807cb94ee6SHong Zhang PetscScalar *y_data,*parray; 28116016685SHong Zhang void *mem; 28216016685SHong Zhang const PCType pctype; 283ace3abfcSBarry Smith PetscBool pcnone; 28416016685SHong Zhang Vec sol = ts->vec_sol; 2857cb94ee6SHong Zhang 2867cb94ee6SHong Zhang PetscFunctionBegin; 2877cb94ee6SHong Zhang ierr = PCSetFromOptions(cvode->pc);CHKERRQ(ierr); 2889f94935aSHong Zhang 2897cb94ee6SHong Zhang /* get the vector size */ 2907cb94ee6SHong Zhang ierr = VecGetSize(ts->vec_sol,&glosize);CHKERRQ(ierr); 2917cb94ee6SHong Zhang ierr = VecGetLocalSize(ts->vec_sol,&locsize);CHKERRQ(ierr); 2927cb94ee6SHong Zhang 2937cb94ee6SHong Zhang /* allocate the memory for N_Vec y */ 294a07356b8SSatish Balay cvode->y = N_VNew_Parallel(cvode->comm_sundials,locsize,glosize); 295e32f2f54SBarry Smith if (!cvode->y) SETERRQ(PETSC_COMM_SELF,1,"cvode->y is not allocated"); 2967cb94ee6SHong Zhang 29728adb3f7SHong Zhang /* initialize N_Vec y: copy ts->vec_sol to cvode->y */ 2987cb94ee6SHong Zhang ierr = VecGetArray(ts->vec_sol,&parray);CHKERRQ(ierr); 2997cb94ee6SHong Zhang y_data = (PetscScalar *) N_VGetArrayPointer(cvode->y); 3007cb94ee6SHong Zhang for (i = 0; i < locsize; i++) y_data[i] = parray[i]; 3017cb94ee6SHong Zhang /*ierr = PetscMemcpy(y_data,parray,locsize*sizeof(PETSC_SCALAR)); CHKERRQ(ierr);*/ 3027cb94ee6SHong Zhang ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr); 3037cb94ee6SHong Zhang ierr = VecDuplicate(ts->vec_sol,&cvode->update);CHKERRQ(ierr); 3047cb94ee6SHong Zhang ierr = VecDuplicate(ts->vec_sol,&cvode->func);CHKERRQ(ierr); 3057cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->update);CHKERRQ(ierr); 3067cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->func);CHKERRQ(ierr); 3077cb94ee6SHong Zhang 3087cb94ee6SHong Zhang /* 3097cb94ee6SHong Zhang Create work vectors for the TSPSolve_Sundials() routine. Note these are 3107cb94ee6SHong Zhang allocated with zero space arrays because the actual array space is provided 3117cb94ee6SHong Zhang by Sundials and set using VecPlaceArray(). 3127cb94ee6SHong Zhang */ 3137adad957SLisandro Dalcin ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w1);CHKERRQ(ierr); 3147adad957SLisandro Dalcin ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w2);CHKERRQ(ierr); 3157cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->w1);CHKERRQ(ierr); 3167cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->w2);CHKERRQ(ierr); 31716016685SHong Zhang 31816016685SHong Zhang /* Call CVodeCreate to create the solver memory and the use of a Newton iteration */ 31916016685SHong Zhang mem = CVodeCreate(cvode->cvode_type, CV_NEWTON); 320e32f2f54SBarry Smith if (!mem) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"CVodeCreate() fails"); 32116016685SHong Zhang cvode->mem = mem; 32216016685SHong Zhang 32316016685SHong Zhang /* Set the pointer to user-defined data */ 32416016685SHong Zhang flag = CVodeSetUserData(mem, ts); 325e32f2f54SBarry Smith if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSetUserData() fails"); 32616016685SHong Zhang 327fc6b9e64SJed Brown /* Sundials may choose to use a smaller initial step, but will never use a larger step. */ 328fc6b9e64SJed Brown flag = CVodeSetInitStep(mem,(realtype)ts->initial_time_step); 329fc6b9e64SJed Brown if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetInitStep() failed"); 330f1cd61daSJed Brown if (cvode->mindt > 0) { 331f1cd61daSJed Brown flag = CVodeSetMinStep(mem,(realtype)cvode->mindt); 3329f94935aSHong Zhang if (flag){ 3339f94935aSHong Zhang if (flag == CV_MEM_NULL){ 3349f94935aSHong Zhang SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, cvode_mem pointer is NULL"); 3359f94935aSHong Zhang } else if (flag == CV_ILL_INPUT){ 3369f94935aSHong Zhang SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, hmin is nonpositive or it exceeds the maximum allowable step size"); 3379f94935aSHong Zhang } else { 3389f94935aSHong Zhang SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed"); 3399f94935aSHong Zhang } 3409f94935aSHong Zhang } 341f1cd61daSJed Brown } 342f1cd61daSJed Brown if (cvode->maxdt > 0) { 343f1cd61daSJed Brown flag = CVodeSetMaxStep(mem,(realtype)cvode->maxdt); 344f1cd61daSJed Brown if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMaxStep() failed"); 345f1cd61daSJed Brown } 346f1cd61daSJed Brown 34716016685SHong Zhang /* Call CVodeInit to initialize the integrator memory and specify the 34816016685SHong Zhang * user's right hand side function in u'=f(t,u), the inital time T0, and 34916016685SHong Zhang * the initial dependent variable vector cvode->y */ 35016016685SHong Zhang flag = CVodeInit(mem,TSFunction_Sundials,ts->ptime,cvode->y); 35116016685SHong Zhang if (flag){ 352e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeInit() fails, flag %d",flag); 35316016685SHong Zhang } 35416016685SHong Zhang 3559f94935aSHong Zhang /* specifies scalar relative and absolute tolerances */ 35616016685SHong Zhang flag = CVodeSStolerances(mem,cvode->reltol,cvode->abstol); 35716016685SHong Zhang if (flag){ 358e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSStolerances() fails, flag %d",flag); 35916016685SHong Zhang } 36016016685SHong Zhang 3619f94935aSHong Zhang /* Specify max num of steps to be taken by cvode in its attempt to reach the next output time */ 3629f94935aSHong Zhang flag = CVodeSetMaxNumSteps(mem,ts->max_steps); 36316016685SHong Zhang ierr = TSMonitor(ts,ts->steps,ts->ptime,sol);CHKERRQ(ierr); 36416016685SHong Zhang 36516016685SHong Zhang /* call CVSpgmr to use GMRES as the linear solver. */ 36616016685SHong Zhang /* setup the ode integrator with the given preconditioner */ 36716016685SHong Zhang ierr = PCGetType(cvode->pc,&pctype);CHKERRQ(ierr); 36816016685SHong Zhang ierr = PetscTypeCompare((PetscObject)cvode->pc,PCNONE,&pcnone);CHKERRQ(ierr); 36916016685SHong Zhang if (pcnone){ 37016016685SHong Zhang flag = CVSpgmr(mem,PREC_NONE,0); 371e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag); 37216016685SHong Zhang } else { 37316016685SHong Zhang flag = CVSpgmr(mem,PREC_LEFT,0); 374e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag); 37516016685SHong Zhang 37616016685SHong Zhang /* Set preconditioner and solve routines Precond and PSolve, 37716016685SHong Zhang and the pointer to the user-defined block data */ 37816016685SHong Zhang flag = CVSpilsSetPreconditioner(mem,TSPrecond_Sundials,TSPSolve_Sundials); 379e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpilsSetPreconditioner() fails, flag %d", flag); 38016016685SHong Zhang } 38116016685SHong Zhang 38216016685SHong Zhang flag = CVSpilsSetGSType(mem, MODIFIED_GS); 383e32f2f54SBarry Smith if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmrSetGSType() fails, flag %d",flag); 3847cb94ee6SHong Zhang PetscFunctionReturn(0); 3857cb94ee6SHong Zhang } 3867cb94ee6SHong Zhang 3876fadb2cdSHong Zhang /* type of CVODE linear multistep method */ 388dfcd32c8SHong Zhang const char *TSSundialsLmmTypes[] = {"","adams","bdf","TSSundialsLmmType","SUNDIALS_",0}; 3896fadb2cdSHong Zhang /* type of G-S orthogonalization used by CVODE linear solver */ 390dfcd32c8SHong Zhang const char *TSSundialsGramSchmidtTypes[] = {"","modified","classical","TSSundialsGramSchmidtType","SUNDIALS_",0}; 391a04cf4d8SBarry Smith 3927cb94ee6SHong Zhang #undef __FUNCT__ 393*214bc6a2SJed Brown #define __FUNCT__ "TSSetFromOptions_Sundials" 394*214bc6a2SJed Brown PetscErrorCode TSSetFromOptions_Sundials(TS ts) 3957cb94ee6SHong Zhang { 3967cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 3977cb94ee6SHong Zhang PetscErrorCode ierr; 3987cb94ee6SHong Zhang int indx; 399ace3abfcSBarry Smith PetscBool flag; 4007cb94ee6SHong Zhang 4017cb94ee6SHong Zhang PetscFunctionBegin; 4027cb94ee6SHong Zhang ierr = PetscOptionsHead("SUNDIALS ODE solver options");CHKERRQ(ierr); 4036fadb2cdSHong Zhang ierr = PetscOptionsEList("-ts_sundials_type","Scheme","TSSundialsSetType",TSSundialsLmmTypes,3,TSSundialsLmmTypes[cvode->cvode_type],&indx,&flag);CHKERRQ(ierr); 4047cb94ee6SHong Zhang if (flag) { 4056fadb2cdSHong Zhang ierr = TSSundialsSetType(ts,(TSSundialsLmmType)indx);CHKERRQ(ierr); 4067cb94ee6SHong Zhang } 4076fadb2cdSHong Zhang ierr = PetscOptionsEList("-ts_sundials_gramschmidt_type","Type of orthogonalization","TSSundialsSetGramSchmidtType",TSSundialsGramSchmidtTypes,3,TSSundialsGramSchmidtTypes[cvode->gtype],&indx,&flag);CHKERRQ(ierr); 4087cb94ee6SHong Zhang if (flag) { 4097cb94ee6SHong Zhang ierr = TSSundialsSetGramSchmidtType(ts,(TSSundialsGramSchmidtType)indx);CHKERRQ(ierr); 4107cb94ee6SHong Zhang } 4117cb94ee6SHong Zhang ierr = PetscOptionsReal("-ts_sundials_atol","Absolute tolerance for convergence","TSSundialsSetTolerance",cvode->abstol,&cvode->abstol,PETSC_NULL);CHKERRQ(ierr); 4127cb94ee6SHong Zhang ierr = PetscOptionsReal("-ts_sundials_rtol","Relative tolerance for convergence","TSSundialsSetTolerance",cvode->reltol,&cvode->reltol,PETSC_NULL);CHKERRQ(ierr); 413f1cd61daSJed Brown ierr = PetscOptionsReal("-ts_sundials_mindt","Minimum step size","TSSundialsSetMinTimeStep",cvode->mindt,&cvode->mindt,PETSC_NULL);CHKERRQ(ierr); 414f1cd61daSJed Brown ierr = PetscOptionsReal("-ts_sundials_maxdt","Maximum step size","TSSundialsSetMaxTimeStep",cvode->maxdt,&cvode->maxdt,PETSC_NULL);CHKERRQ(ierr); 4157cb94ee6SHong Zhang ierr = PetscOptionsReal("-ts_sundials_linear_tolerance","Convergence tolerance for linear solve","TSSundialsSetLinearTolerance",cvode->linear_tol,&cvode->linear_tol,&flag);CHKERRQ(ierr); 4167cb94ee6SHong Zhang ierr = PetscOptionsInt("-ts_sundials_gmres_restart","Number of GMRES orthogonalization directions","TSSundialsSetGMRESRestart",cvode->restart,&cvode->restart,&flag);CHKERRQ(ierr); 417acfcf0e5SJed Brown ierr = PetscOptionsBool("-ts_sundials_exact_final_time","Interpolate output to stop exactly at the final time","TSSundialsSetExactFinalTime",cvode->exact_final_time,&cvode->exact_final_time,PETSC_NULL);CHKERRQ(ierr); 418acfcf0e5SJed Brown ierr = PetscOptionsBool("-ts_sundials_monitor_steps","Monitor SUNDIALS internel steps","TSSundialsMonitorInternalSteps",cvode->monitorstep,&cvode->monitorstep,PETSC_NULL);CHKERRQ(ierr); 4197cb94ee6SHong Zhang ierr = PetscOptionsTail();CHKERRQ(ierr); 4207cb94ee6SHong Zhang PetscFunctionReturn(0); 4217cb94ee6SHong Zhang } 4227cb94ee6SHong Zhang 4237cb94ee6SHong Zhang #undef __FUNCT__ 4247cb94ee6SHong Zhang #define __FUNCT__ "TSView_Sundials" 4257cb94ee6SHong Zhang PetscErrorCode TSView_Sundials(TS ts,PetscViewer viewer) 4267cb94ee6SHong Zhang { 4277cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 4287cb94ee6SHong Zhang PetscErrorCode ierr; 4297cb94ee6SHong Zhang char *type; 4307cb94ee6SHong Zhang char atype[] = "Adams"; 4317cb94ee6SHong Zhang char btype[] = "BDF: backward differentiation formula"; 432ace3abfcSBarry Smith PetscBool iascii,isstring; 4332c823083SHong Zhang long int nsteps,its,nfevals,nlinsetups,nfails,itmp; 4342c823083SHong Zhang PetscInt qlast,qcur; 4355d47aee6SHong Zhang PetscReal hinused,hlast,hcur,tcur,tolsfac; 4367cb94ee6SHong Zhang 4377cb94ee6SHong Zhang PetscFunctionBegin; 4387cb94ee6SHong Zhang if (cvode->cvode_type == SUNDIALS_ADAMS) {type = atype;} 4397cb94ee6SHong Zhang else {type = btype;} 4407cb94ee6SHong Zhang 4412692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 4422692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr); 4437cb94ee6SHong Zhang if (iascii) { 4447cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater does not use SNES!\n");CHKERRQ(ierr); 4457cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater type %s\n",type);CHKERRQ(ierr); 4467cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials abs tol %g rel tol %g\n",cvode->abstol,cvode->reltol);CHKERRQ(ierr); 4477cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials linear solver tolerance factor %g\n",cvode->linear_tol);CHKERRQ(ierr); 4487cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials GMRES max iterations (same as restart in SUNDIALS) %D\n",cvode->restart);CHKERRQ(ierr); 4497cb94ee6SHong Zhang if (cvode->gtype == SUNDIALS_MODIFIED_GS) { 4507cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials using modified Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr); 4517cb94ee6SHong Zhang } else { 4527cb94ee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials using unmodified (classical) Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr); 4537cb94ee6SHong Zhang } 454f1cd61daSJed Brown if (cvode->mindt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials minimum time step %g\n",cvode->mindt);CHKERRQ(ierr);} 455f1cd61daSJed Brown if (cvode->maxdt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials maximum time step %g\n",cvode->maxdt);CHKERRQ(ierr);} 4562c823083SHong Zhang 4575d47aee6SHong Zhang /* Outputs from CVODE, CVSPILS */ 4585d47aee6SHong Zhang ierr = CVodeGetTolScaleFactor(cvode->mem,&tolsfac);CHKERRQ(ierr); 4595d47aee6SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials suggested factor for tolerance scaling %g\n",tolsfac);CHKERRQ(ierr); 4602c823083SHong Zhang ierr = CVodeGetIntegratorStats(cvode->mem,&nsteps,&nfevals, 4612c823083SHong Zhang &nlinsetups,&nfails,&qlast,&qcur, 4622c823083SHong Zhang &hinused,&hlast,&hcur,&tcur);CHKERRQ(ierr); 4632c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials cumulative number of internal steps %D\n",nsteps);CHKERRQ(ierr); 4642c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to rhs function %D\n",nfevals);CHKERRQ(ierr); 4652c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to linear solver setup function %D\n",nlinsetups);CHKERRQ(ierr); 4662c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of error test failures %D\n",nfails);CHKERRQ(ierr); 4672c823083SHong Zhang 4682c823083SHong Zhang ierr = CVodeGetNonlinSolvStats(cvode->mem,&its,&nfails);CHKERRQ(ierr); 4692c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear solver iterations %D\n",its);CHKERRQ(ierr); 4702c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear convergence failure %D\n",nfails);CHKERRQ(ierr); 4712c823083SHong Zhang 4722c823083SHong Zhang ierr = CVSpilsGetNumLinIters(cvode->mem, &its);CHKERRQ(ierr); /* its = no. of calls to TSPrecond_Sundials() */ 4732c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear iterations %D\n",its);CHKERRQ(ierr); 4742c823083SHong Zhang ierr = CVSpilsGetNumConvFails(cvode->mem,&itmp);CHKERRQ(ierr); 4752c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear convergence failures %D\n",itmp);CHKERRQ(ierr); 4762c823083SHong Zhang ierr = CVSpilsGetNumPrecEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4772c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner evaluations %D\n",itmp);CHKERRQ(ierr); 4782c823083SHong Zhang ierr = CVSpilsGetNumPrecSolves(cvode->mem,&itmp);CHKERRQ(ierr); 4792c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner solves %D\n",itmp);CHKERRQ(ierr); 4802c823083SHong Zhang ierr = CVSpilsGetNumJtimesEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4812c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of Jacobian-vector product evaluations %D\n",itmp);CHKERRQ(ierr); 4822c823083SHong Zhang ierr = CVSpilsGetNumRhsEvals(cvode->mem,&itmp);CHKERRQ(ierr); 4832c823083SHong Zhang ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of rhs calls for finite diff. Jacobian-vector evals %D\n",itmp);CHKERRQ(ierr); 4847cb94ee6SHong Zhang } else if (isstring) { 4857cb94ee6SHong Zhang ierr = PetscViewerStringSPrintf(viewer,"Sundials type %s",type);CHKERRQ(ierr); 4867cb94ee6SHong Zhang } else { 487e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by TS Sundials",((PetscObject)viewer)->type_name); 4887cb94ee6SHong Zhang } 4897cb94ee6SHong Zhang ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 4907cb94ee6SHong Zhang ierr = PCView(cvode->pc,viewer);CHKERRQ(ierr); 4917cb94ee6SHong Zhang ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 4927cb94ee6SHong Zhang PetscFunctionReturn(0); 4937cb94ee6SHong Zhang } 4947cb94ee6SHong Zhang 4957cb94ee6SHong Zhang 4967cb94ee6SHong Zhang /* --------------------------------------------------------------------------*/ 4977cb94ee6SHong Zhang EXTERN_C_BEGIN 4987cb94ee6SHong Zhang #undef __FUNCT__ 4997cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType_Sundials" 5007087cfbeSBarry Smith PetscErrorCode TSSundialsSetType_Sundials(TS ts,TSSundialsLmmType type) 5017cb94ee6SHong Zhang { 5027cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5037cb94ee6SHong Zhang 5047cb94ee6SHong Zhang PetscFunctionBegin; 5057cb94ee6SHong Zhang cvode->cvode_type = type; 5067cb94ee6SHong Zhang PetscFunctionReturn(0); 5077cb94ee6SHong Zhang } 5087cb94ee6SHong Zhang EXTERN_C_END 5097cb94ee6SHong Zhang 5107cb94ee6SHong Zhang EXTERN_C_BEGIN 5117cb94ee6SHong Zhang #undef __FUNCT__ 5127cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart_Sundials" 5137087cfbeSBarry Smith PetscErrorCode TSSundialsSetGMRESRestart_Sundials(TS ts,int restart) 5147cb94ee6SHong Zhang { 5157cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5167cb94ee6SHong Zhang 5177cb94ee6SHong Zhang PetscFunctionBegin; 5187cb94ee6SHong Zhang cvode->restart = restart; 5197cb94ee6SHong Zhang PetscFunctionReturn(0); 5207cb94ee6SHong Zhang } 5217cb94ee6SHong Zhang EXTERN_C_END 5227cb94ee6SHong Zhang 5237cb94ee6SHong Zhang EXTERN_C_BEGIN 5247cb94ee6SHong Zhang #undef __FUNCT__ 5257cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance_Sundials" 5267087cfbeSBarry Smith PetscErrorCode TSSundialsSetLinearTolerance_Sundials(TS ts,double tol) 5277cb94ee6SHong Zhang { 5287cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5297cb94ee6SHong Zhang 5307cb94ee6SHong Zhang PetscFunctionBegin; 5317cb94ee6SHong Zhang cvode->linear_tol = tol; 5327cb94ee6SHong Zhang PetscFunctionReturn(0); 5337cb94ee6SHong Zhang } 5347cb94ee6SHong Zhang EXTERN_C_END 5357cb94ee6SHong Zhang 5367cb94ee6SHong Zhang EXTERN_C_BEGIN 5377cb94ee6SHong Zhang #undef __FUNCT__ 5387cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType_Sundials" 5397087cfbeSBarry Smith PetscErrorCode TSSundialsSetGramSchmidtType_Sundials(TS ts,TSSundialsGramSchmidtType type) 5407cb94ee6SHong Zhang { 5417cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5427cb94ee6SHong Zhang 5437cb94ee6SHong Zhang PetscFunctionBegin; 5447cb94ee6SHong Zhang cvode->gtype = type; 5457cb94ee6SHong Zhang PetscFunctionReturn(0); 5467cb94ee6SHong Zhang } 5477cb94ee6SHong Zhang EXTERN_C_END 5487cb94ee6SHong Zhang 5497cb94ee6SHong Zhang EXTERN_C_BEGIN 5507cb94ee6SHong Zhang #undef __FUNCT__ 5517cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance_Sundials" 5527087cfbeSBarry Smith PetscErrorCode TSSundialsSetTolerance_Sundials(TS ts,double aabs,double rel) 5537cb94ee6SHong Zhang { 5547cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5557cb94ee6SHong Zhang 5567cb94ee6SHong Zhang PetscFunctionBegin; 5577cb94ee6SHong Zhang if (aabs != PETSC_DECIDE) cvode->abstol = aabs; 5587cb94ee6SHong Zhang if (rel != PETSC_DECIDE) cvode->reltol = rel; 5597cb94ee6SHong Zhang PetscFunctionReturn(0); 5607cb94ee6SHong Zhang } 5617cb94ee6SHong Zhang EXTERN_C_END 5627cb94ee6SHong Zhang 5637cb94ee6SHong Zhang EXTERN_C_BEGIN 5647cb94ee6SHong Zhang #undef __FUNCT__ 565f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep_Sundials" 5667087cfbeSBarry Smith PetscErrorCode TSSundialsSetMinTimeStep_Sundials(TS ts,PetscReal mindt) 567f1cd61daSJed Brown { 568f1cd61daSJed Brown TS_Sundials *cvode = (TS_Sundials*)ts->data; 569f1cd61daSJed Brown 570f1cd61daSJed Brown PetscFunctionBegin; 571f1cd61daSJed Brown cvode->mindt = mindt; 572f1cd61daSJed Brown PetscFunctionReturn(0); 573f1cd61daSJed Brown } 574f1cd61daSJed Brown EXTERN_C_END 575f1cd61daSJed Brown 576f1cd61daSJed Brown EXTERN_C_BEGIN 577f1cd61daSJed Brown #undef __FUNCT__ 578f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep_Sundials" 5797087cfbeSBarry Smith PetscErrorCode TSSundialsSetMaxTimeStep_Sundials(TS ts,PetscReal maxdt) 580f1cd61daSJed Brown { 581f1cd61daSJed Brown TS_Sundials *cvode = (TS_Sundials*)ts->data; 582f1cd61daSJed Brown 583f1cd61daSJed Brown PetscFunctionBegin; 584f1cd61daSJed Brown cvode->maxdt = maxdt; 585f1cd61daSJed Brown PetscFunctionReturn(0); 586f1cd61daSJed Brown } 587f1cd61daSJed Brown EXTERN_C_END 588f1cd61daSJed Brown 589f1cd61daSJed Brown EXTERN_C_BEGIN 590f1cd61daSJed Brown #undef __FUNCT__ 5917cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC_Sundials" 5927087cfbeSBarry Smith PetscErrorCode TSSundialsGetPC_Sundials(TS ts,PC *pc) 5937cb94ee6SHong Zhang { 5947cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 5957cb94ee6SHong Zhang 5967cb94ee6SHong Zhang PetscFunctionBegin; 5977cb94ee6SHong Zhang *pc = cvode->pc; 5987cb94ee6SHong Zhang PetscFunctionReturn(0); 5997cb94ee6SHong Zhang } 6007cb94ee6SHong Zhang EXTERN_C_END 6017cb94ee6SHong Zhang 6027cb94ee6SHong Zhang EXTERN_C_BEGIN 6037cb94ee6SHong Zhang #undef __FUNCT__ 6047cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations_Sundials" 6057087cfbeSBarry Smith PetscErrorCode TSSundialsGetIterations_Sundials(TS ts,int *nonlin,int *lin) 6067cb94ee6SHong Zhang { 6077cb94ee6SHong Zhang PetscFunctionBegin; 6082c823083SHong Zhang if (nonlin) *nonlin = ts->nonlinear_its; 6092c823083SHong Zhang if (lin) *lin = ts->linear_its; 6107cb94ee6SHong Zhang PetscFunctionReturn(0); 6117cb94ee6SHong Zhang } 6127cb94ee6SHong Zhang EXTERN_C_END 6137cb94ee6SHong Zhang 6147cb94ee6SHong Zhang EXTERN_C_BEGIN 6157cb94ee6SHong Zhang #undef __FUNCT__ 6167cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime_Sundials" 6177087cfbeSBarry Smith PetscErrorCode TSSundialsSetExactFinalTime_Sundials(TS ts,PetscBool s) 6187cb94ee6SHong Zhang { 6197cb94ee6SHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 6207cb94ee6SHong Zhang 6217cb94ee6SHong Zhang PetscFunctionBegin; 6227cb94ee6SHong Zhang cvode->exact_final_time = s; 6237cb94ee6SHong Zhang PetscFunctionReturn(0); 6247cb94ee6SHong Zhang } 6257cb94ee6SHong Zhang EXTERN_C_END 6262bfc04deSHong Zhang 6272bfc04deSHong Zhang EXTERN_C_BEGIN 6282bfc04deSHong Zhang #undef __FUNCT__ 6292bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps_Sundials" 6307087cfbeSBarry Smith PetscErrorCode TSSundialsMonitorInternalSteps_Sundials(TS ts,PetscBool s) 6312bfc04deSHong Zhang { 6322bfc04deSHong Zhang TS_Sundials *cvode = (TS_Sundials*)ts->data; 6332bfc04deSHong Zhang 6342bfc04deSHong Zhang PetscFunctionBegin; 6352bfc04deSHong Zhang cvode->monitorstep = s; 6362bfc04deSHong Zhang PetscFunctionReturn(0); 6372bfc04deSHong Zhang } 6382bfc04deSHong Zhang EXTERN_C_END 6397cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/ 6407cb94ee6SHong Zhang 6417cb94ee6SHong Zhang #undef __FUNCT__ 6427cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations" 6437cb94ee6SHong Zhang /*@C 6447cb94ee6SHong Zhang TSSundialsGetIterations - Gets the number of nonlinear and linear iterations used so far by Sundials. 6457cb94ee6SHong Zhang 6467cb94ee6SHong Zhang Not Collective 6477cb94ee6SHong Zhang 6487cb94ee6SHong Zhang Input parameters: 6497cb94ee6SHong Zhang . ts - the time-step context 6507cb94ee6SHong Zhang 6517cb94ee6SHong Zhang Output Parameters: 6527cb94ee6SHong Zhang + nonlin - number of nonlinear iterations 6537cb94ee6SHong Zhang - lin - number of linear iterations 6547cb94ee6SHong Zhang 6557cb94ee6SHong Zhang Level: advanced 6567cb94ee6SHong Zhang 6577cb94ee6SHong Zhang Notes: 6587cb94ee6SHong Zhang These return the number since the creation of the TS object 6597cb94ee6SHong Zhang 6607cb94ee6SHong Zhang .keywords: non-linear iterations, linear iterations 6617cb94ee6SHong Zhang 6627cb94ee6SHong Zhang .seealso: TSSundialsSetType(), TSSundialsSetGMRESRestart(), 6637cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 6647cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 665f1cd61daSJed Brown TSSundialsSetLinearTolerance(), TSSundialsGetPC(), TSSundialsSetExactFinalTime() 6667cb94ee6SHong Zhang 6677cb94ee6SHong Zhang @*/ 6687087cfbeSBarry Smith PetscErrorCode TSSundialsGetIterations(TS ts,int *nonlin,int *lin) 6697cb94ee6SHong Zhang { 6704ac538c5SBarry Smith PetscErrorCode ierr; 6717cb94ee6SHong Zhang 6727cb94ee6SHong Zhang PetscFunctionBegin; 6734ac538c5SBarry Smith ierr = PetscUseMethod(ts,"TSSundialsGetIterations_C",(TS,int*,int*),(ts,nonlin,lin));CHKERRQ(ierr); 6747cb94ee6SHong Zhang PetscFunctionReturn(0); 6757cb94ee6SHong Zhang } 6767cb94ee6SHong Zhang 6777cb94ee6SHong Zhang #undef __FUNCT__ 6787cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType" 6797cb94ee6SHong Zhang /*@ 6807cb94ee6SHong Zhang TSSundialsSetType - Sets the method that Sundials will use for integration. 6817cb94ee6SHong Zhang 6823f9fe445SBarry Smith Logically Collective on TS 6837cb94ee6SHong Zhang 6847cb94ee6SHong Zhang Input parameters: 6857cb94ee6SHong Zhang + ts - the time-step context 6867cb94ee6SHong Zhang - type - one of SUNDIALS_ADAMS or SUNDIALS_BDF 6877cb94ee6SHong Zhang 6887cb94ee6SHong Zhang Level: intermediate 6897cb94ee6SHong Zhang 6907cb94ee6SHong Zhang .keywords: Adams, backward differentiation formula 6917cb94ee6SHong Zhang 6927cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetGMRESRestart(), 6937cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 6947cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 6957cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 6967cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 6977cb94ee6SHong Zhang @*/ 6987087cfbeSBarry Smith PetscErrorCode TSSundialsSetType(TS ts,TSSundialsLmmType type) 6997cb94ee6SHong Zhang { 7004ac538c5SBarry Smith PetscErrorCode ierr; 7017cb94ee6SHong Zhang 7027cb94ee6SHong Zhang PetscFunctionBegin; 7034ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetType_C",(TS,TSSundialsLmmType),(ts,type));CHKERRQ(ierr); 7047cb94ee6SHong Zhang PetscFunctionReturn(0); 7057cb94ee6SHong Zhang } 7067cb94ee6SHong Zhang 7077cb94ee6SHong Zhang #undef __FUNCT__ 7087cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart" 7097cb94ee6SHong Zhang /*@ 7107cb94ee6SHong Zhang TSSundialsSetGMRESRestart - Sets the dimension of the Krylov space used by 7117cb94ee6SHong Zhang GMRES in the linear solver in SUNDIALS. SUNDIALS DOES NOT use restarted GMRES so 7127cb94ee6SHong Zhang this is ALSO the maximum number of GMRES steps that will be used. 7137cb94ee6SHong Zhang 7143f9fe445SBarry Smith Logically Collective on TS 7157cb94ee6SHong Zhang 7167cb94ee6SHong Zhang Input parameters: 7177cb94ee6SHong Zhang + ts - the time-step context 7187cb94ee6SHong Zhang - restart - number of direction vectors (the restart size). 7197cb94ee6SHong Zhang 7207cb94ee6SHong Zhang Level: advanced 7217cb94ee6SHong Zhang 7227cb94ee6SHong Zhang .keywords: GMRES, restart 7237cb94ee6SHong Zhang 7247cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), 7257cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 7267cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7277cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 7287cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 7297cb94ee6SHong Zhang 7307cb94ee6SHong Zhang @*/ 7317087cfbeSBarry Smith PetscErrorCode TSSundialsSetGMRESRestart(TS ts,int restart) 7327cb94ee6SHong Zhang { 7334ac538c5SBarry Smith PetscErrorCode ierr; 7347cb94ee6SHong Zhang 7357cb94ee6SHong Zhang PetscFunctionBegin; 736c5eb9154SBarry Smith PetscValidLogicalCollectiveInt(ts,restart,2); 7374ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetGMRESRestart_C",(TS,int),(ts,restart));CHKERRQ(ierr); 7387cb94ee6SHong Zhang PetscFunctionReturn(0); 7397cb94ee6SHong Zhang } 7407cb94ee6SHong Zhang 7417cb94ee6SHong Zhang #undef __FUNCT__ 7427cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance" 7437cb94ee6SHong Zhang /*@ 7447cb94ee6SHong Zhang TSSundialsSetLinearTolerance - Sets the tolerance used to solve the linear 7457cb94ee6SHong Zhang system by SUNDIALS. 7467cb94ee6SHong Zhang 7473f9fe445SBarry Smith Logically Collective on TS 7487cb94ee6SHong Zhang 7497cb94ee6SHong Zhang Input parameters: 7507cb94ee6SHong Zhang + ts - the time-step context 7517cb94ee6SHong Zhang - tol - the factor by which the tolerance on the nonlinear solver is 7527cb94ee6SHong Zhang multiplied to get the tolerance on the linear solver, .05 by default. 7537cb94ee6SHong Zhang 7547cb94ee6SHong Zhang Level: advanced 7557cb94ee6SHong Zhang 7567cb94ee6SHong Zhang .keywords: GMRES, linear convergence tolerance, SUNDIALS 7577cb94ee6SHong Zhang 7587cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7597cb94ee6SHong Zhang TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 7607cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7617cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 7627cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 7637cb94ee6SHong Zhang 7647cb94ee6SHong Zhang @*/ 7657087cfbeSBarry Smith PetscErrorCode TSSundialsSetLinearTolerance(TS ts,double tol) 7667cb94ee6SHong Zhang { 7674ac538c5SBarry Smith PetscErrorCode ierr; 7687cb94ee6SHong Zhang 7697cb94ee6SHong Zhang PetscFunctionBegin; 770c5eb9154SBarry Smith PetscValidLogicalCollectiveReal(ts,tol,2); 7714ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetLinearTolerance_C",(TS,double),(ts,tol));CHKERRQ(ierr); 7727cb94ee6SHong Zhang PetscFunctionReturn(0); 7737cb94ee6SHong Zhang } 7747cb94ee6SHong Zhang 7757cb94ee6SHong Zhang #undef __FUNCT__ 7767cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType" 7777cb94ee6SHong Zhang /*@ 7787cb94ee6SHong Zhang TSSundialsSetGramSchmidtType - Sets type of orthogonalization used 7797cb94ee6SHong Zhang in GMRES method by SUNDIALS linear solver. 7807cb94ee6SHong Zhang 7813f9fe445SBarry Smith Logically Collective on TS 7827cb94ee6SHong Zhang 7837cb94ee6SHong Zhang Input parameters: 7847cb94ee6SHong Zhang + ts - the time-step context 7857cb94ee6SHong Zhang - type - either SUNDIALS_MODIFIED_GS or SUNDIALS_CLASSICAL_GS 7867cb94ee6SHong Zhang 7877cb94ee6SHong Zhang Level: advanced 7887cb94ee6SHong Zhang 7897cb94ee6SHong Zhang .keywords: Sundials, orthogonalization 7907cb94ee6SHong Zhang 7917cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7927cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), 7937cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 7947cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 7957cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 7967cb94ee6SHong Zhang 7977cb94ee6SHong Zhang @*/ 7987087cfbeSBarry Smith PetscErrorCode TSSundialsSetGramSchmidtType(TS ts,TSSundialsGramSchmidtType type) 7997cb94ee6SHong Zhang { 8004ac538c5SBarry Smith PetscErrorCode ierr; 8017cb94ee6SHong Zhang 8027cb94ee6SHong Zhang PetscFunctionBegin; 8034ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetGramSchmidtType_C",(TS,TSSundialsGramSchmidtType),(ts,type));CHKERRQ(ierr); 8047cb94ee6SHong Zhang PetscFunctionReturn(0); 8057cb94ee6SHong Zhang } 8067cb94ee6SHong Zhang 8077cb94ee6SHong Zhang #undef __FUNCT__ 8087cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance" 8097cb94ee6SHong Zhang /*@ 8107cb94ee6SHong Zhang TSSundialsSetTolerance - Sets the absolute and relative tolerance used by 8117cb94ee6SHong Zhang Sundials for error control. 8127cb94ee6SHong Zhang 8133f9fe445SBarry Smith Logically Collective on TS 8147cb94ee6SHong Zhang 8157cb94ee6SHong Zhang Input parameters: 8167cb94ee6SHong Zhang + ts - the time-step context 8177cb94ee6SHong Zhang . aabs - the absolute tolerance 8187cb94ee6SHong Zhang - rel - the relative tolerance 8197cb94ee6SHong Zhang 8207cb94ee6SHong Zhang See the Cvode/Sundials users manual for exact details on these parameters. Essentially 8217cb94ee6SHong Zhang these regulate the size of the error for a SINGLE timestep. 8227cb94ee6SHong Zhang 8237cb94ee6SHong Zhang Level: intermediate 8247cb94ee6SHong Zhang 8257cb94ee6SHong Zhang .keywords: Sundials, tolerance 8267cb94ee6SHong Zhang 8277cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8287cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), 8297cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8307cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(), 8317cb94ee6SHong Zhang TSSundialsSetExactFinalTime() 8327cb94ee6SHong Zhang 8337cb94ee6SHong Zhang @*/ 8347087cfbeSBarry Smith PetscErrorCode TSSundialsSetTolerance(TS ts,double aabs,double rel) 8357cb94ee6SHong Zhang { 8364ac538c5SBarry Smith PetscErrorCode ierr; 8377cb94ee6SHong Zhang 8387cb94ee6SHong Zhang PetscFunctionBegin; 8394ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetTolerance_C",(TS,double,double),(ts,aabs,rel));CHKERRQ(ierr); 8407cb94ee6SHong Zhang PetscFunctionReturn(0); 8417cb94ee6SHong Zhang } 8427cb94ee6SHong Zhang 8437cb94ee6SHong Zhang #undef __FUNCT__ 8447cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC" 8457cb94ee6SHong Zhang /*@ 8467cb94ee6SHong Zhang TSSundialsGetPC - Extract the PC context from a time-step context for Sundials. 8477cb94ee6SHong Zhang 8487cb94ee6SHong Zhang Input Parameter: 8497cb94ee6SHong Zhang . ts - the time-step context 8507cb94ee6SHong Zhang 8517cb94ee6SHong Zhang Output Parameter: 8527cb94ee6SHong Zhang . pc - the preconditioner context 8537cb94ee6SHong Zhang 8547cb94ee6SHong Zhang Level: advanced 8557cb94ee6SHong Zhang 8567cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8577cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 8587cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8597cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance() 8607cb94ee6SHong Zhang @*/ 8617087cfbeSBarry Smith PetscErrorCode TSSundialsGetPC(TS ts,PC *pc) 8627cb94ee6SHong Zhang { 8634ac538c5SBarry Smith PetscErrorCode ierr; 8647cb94ee6SHong Zhang 8657cb94ee6SHong Zhang PetscFunctionBegin; 8664ac538c5SBarry Smith ierr = PetscUseMethod(ts,"TSSundialsGetPC_C",(TS,PC *),(ts,pc));CHKERRQ(ierr); 8677cb94ee6SHong Zhang PetscFunctionReturn(0); 8687cb94ee6SHong Zhang } 8697cb94ee6SHong Zhang 8707cb94ee6SHong Zhang #undef __FUNCT__ 8717cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime" 8727cb94ee6SHong Zhang /*@ 8737cb94ee6SHong Zhang TSSundialsSetExactFinalTime - Determines if Sundials interpolates solution to the 8747cb94ee6SHong Zhang exact final time requested by the user or just returns it at the final time 8757cb94ee6SHong Zhang it computed. (Defaults to true). 8767cb94ee6SHong Zhang 8777cb94ee6SHong Zhang Input Parameter: 8787cb94ee6SHong Zhang + ts - the time-step context 8797cb94ee6SHong Zhang - ft - PETSC_TRUE if interpolates, else PETSC_FALSE 8807cb94ee6SHong Zhang 8817cb94ee6SHong Zhang Level: beginner 8827cb94ee6SHong Zhang 8837cb94ee6SHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8847cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 8857cb94ee6SHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 8867cb94ee6SHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC() 8877cb94ee6SHong Zhang @*/ 8887087cfbeSBarry Smith PetscErrorCode TSSundialsSetExactFinalTime(TS ts,PetscBool ft) 8897cb94ee6SHong Zhang { 8904ac538c5SBarry Smith PetscErrorCode ierr; 8917cb94ee6SHong Zhang 8927cb94ee6SHong Zhang PetscFunctionBegin; 8934ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetExactFinalTime_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr); 8947cb94ee6SHong Zhang PetscFunctionReturn(0); 8957cb94ee6SHong Zhang } 8967cb94ee6SHong Zhang 8972bfc04deSHong Zhang #undef __FUNCT__ 898f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep" 899f1cd61daSJed Brown /*@ 900f1cd61daSJed Brown TSSundialsSetMinTimeStep - Smallest time step to be chosen by the adaptive controller. 901f1cd61daSJed Brown 902f1cd61daSJed Brown Input Parameter: 903f1cd61daSJed Brown + ts - the time-step context 904f1cd61daSJed Brown - mindt - lowest time step if positive, negative to deactivate 905f1cd61daSJed Brown 906fc6b9e64SJed Brown Note: 907fc6b9e64SJed Brown Sundials will error if it is not possible to keep the estimated truncation error below 908fc6b9e64SJed Brown the tolerance set with TSSundialsSetTolerance() without going below this step size. 909fc6b9e64SJed Brown 910f1cd61daSJed Brown Level: beginner 911f1cd61daSJed Brown 912f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(), 913f1cd61daSJed Brown @*/ 9147087cfbeSBarry Smith PetscErrorCode TSSundialsSetMinTimeStep(TS ts,PetscReal mindt) 915f1cd61daSJed Brown { 9164ac538c5SBarry Smith PetscErrorCode ierr; 917f1cd61daSJed Brown 918f1cd61daSJed Brown PetscFunctionBegin; 9194ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetMinTimeStep_C",(TS,PetscReal),(ts,mindt));CHKERRQ(ierr); 920f1cd61daSJed Brown PetscFunctionReturn(0); 921f1cd61daSJed Brown } 922f1cd61daSJed Brown 923f1cd61daSJed Brown #undef __FUNCT__ 924f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep" 925f1cd61daSJed Brown /*@ 926f1cd61daSJed Brown TSSundialsSetMaxTimeStep - Largest time step to be chosen by the adaptive controller. 927f1cd61daSJed Brown 928f1cd61daSJed Brown Input Parameter: 929f1cd61daSJed Brown + ts - the time-step context 930f1cd61daSJed Brown - maxdt - lowest time step if positive, negative to deactivate 931f1cd61daSJed Brown 932f1cd61daSJed Brown Level: beginner 933f1cd61daSJed Brown 934f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(), 935f1cd61daSJed Brown @*/ 9367087cfbeSBarry Smith PetscErrorCode TSSundialsSetMaxTimeStep(TS ts,PetscReal maxdt) 937f1cd61daSJed Brown { 9384ac538c5SBarry Smith PetscErrorCode ierr; 939f1cd61daSJed Brown 940f1cd61daSJed Brown PetscFunctionBegin; 9414ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsSetMaxTimeStep_C",(TS,PetscReal),(ts,maxdt));CHKERRQ(ierr); 942f1cd61daSJed Brown PetscFunctionReturn(0); 943f1cd61daSJed Brown } 944f1cd61daSJed Brown 945f1cd61daSJed Brown #undef __FUNCT__ 9462bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps" 9472bfc04deSHong Zhang /*@ 9482bfc04deSHong Zhang TSSundialsMonitorInternalSteps - Monitor Sundials internal steps (Defaults to false). 9492bfc04deSHong Zhang 9502bfc04deSHong Zhang Input Parameter: 9512bfc04deSHong Zhang + ts - the time-step context 9522bfc04deSHong Zhang - ft - PETSC_TRUE if monitor, else PETSC_FALSE 9532bfc04deSHong Zhang 9542bfc04deSHong Zhang Level: beginner 9552bfc04deSHong Zhang 9562bfc04deSHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 9572bfc04deSHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), 9582bfc04deSHong Zhang TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), 9592bfc04deSHong Zhang TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC() 9602bfc04deSHong Zhang @*/ 9617087cfbeSBarry Smith PetscErrorCode TSSundialsMonitorInternalSteps(TS ts,PetscBool ft) 9622bfc04deSHong Zhang { 9634ac538c5SBarry Smith PetscErrorCode ierr; 9642bfc04deSHong Zhang 9652bfc04deSHong Zhang PetscFunctionBegin; 9664ac538c5SBarry Smith ierr = PetscTryMethod(ts,"TSSundialsMonitorInternalSteps_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr); 9672bfc04deSHong Zhang PetscFunctionReturn(0); 9682bfc04deSHong Zhang } 9697cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/ 9707cb94ee6SHong Zhang /*MC 97196f5712cSJed Brown TSSUNDIALS - ODE solver using the LLNL CVODE/SUNDIALS package (now called SUNDIALS) 9727cb94ee6SHong Zhang 9737cb94ee6SHong Zhang Options Database: 9747cb94ee6SHong Zhang + -ts_sundials_type <bdf,adams> 9757cb94ee6SHong Zhang . -ts_sundials_gramschmidt_type <modified, classical> - type of orthogonalization inside GMRES 9767cb94ee6SHong Zhang . -ts_sundials_atol <tol> - Absolute tolerance for convergence 9777cb94ee6SHong Zhang . -ts_sundials_rtol <tol> - Relative tolerance for convergence 9787cb94ee6SHong Zhang . -ts_sundials_linear_tolerance <tol> 9797cb94ee6SHong Zhang . -ts_sundials_gmres_restart <restart> - Number of GMRES orthogonalization directions 98016016685SHong Zhang . -ts_sundials_exact_final_time - Interpolate output to stop exactly at the final time 98116016685SHong Zhang - -ts_sundials_monitor_steps - Monitor SUNDIALS internel steps 98216016685SHong Zhang 9837cb94ee6SHong Zhang 9847cb94ee6SHong Zhang Notes: This uses its own nonlinear solver and Krylov method so PETSc SNES and KSP options do not apply 9857cb94ee6SHong Zhang only PETSc PC options 9867cb94ee6SHong Zhang 9877cb94ee6SHong Zhang Level: beginner 9887cb94ee6SHong Zhang 9897cb94ee6SHong Zhang .seealso: TSCreate(), TS, TSSetType(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), TSSundialsSetLinearTolerance(), 9907cb94ee6SHong Zhang TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), TSSundialsGetPC(), TSSundialsGetIterations(), TSSundialsSetExactFinalTime() 9917cb94ee6SHong Zhang 9927cb94ee6SHong Zhang M*/ 9937cb94ee6SHong Zhang EXTERN_C_BEGIN 9947cb94ee6SHong Zhang #undef __FUNCT__ 9957cb94ee6SHong Zhang #define __FUNCT__ "TSCreate_Sundials" 9967087cfbeSBarry Smith PetscErrorCode TSCreate_Sundials(TS ts) 9977cb94ee6SHong Zhang { 9987cb94ee6SHong Zhang TS_Sundials *cvode; 9997cb94ee6SHong Zhang PetscErrorCode ierr; 10007cb94ee6SHong Zhang 10017cb94ee6SHong Zhang PetscFunctionBegin; 1002277b19d0SLisandro Dalcin ts->ops->reset = TSReset_Sundials; 100328adb3f7SHong Zhang ts->ops->destroy = TSDestroy_Sundials; 100428adb3f7SHong Zhang ts->ops->view = TSView_Sundials; 1005*214bc6a2SJed Brown ts->ops->setup = TSSetUp_Sundials; 1006*214bc6a2SJed Brown ts->ops->step = TSStep_Sundials; 1007*214bc6a2SJed Brown ts->ops->setfromoptions = TSSetFromOptions_Sundials; 10087cb94ee6SHong Zhang 100938f2d2fdSLisandro Dalcin ierr = PetscNewLog(ts,TS_Sundials,&cvode);CHKERRQ(ierr); 10107adad957SLisandro Dalcin ierr = PCCreate(((PetscObject)ts)->comm,&cvode->pc);CHKERRQ(ierr); 10117cb94ee6SHong Zhang ierr = PetscLogObjectParent(ts,cvode->pc);CHKERRQ(ierr); 10127cb94ee6SHong Zhang ts->data = (void*)cvode; 10136fadb2cdSHong Zhang cvode->cvode_type = SUNDIALS_BDF; 10146fadb2cdSHong Zhang cvode->gtype = SUNDIALS_CLASSICAL_GS; 10157cb94ee6SHong Zhang cvode->restart = 5; 10167cb94ee6SHong Zhang cvode->linear_tol = .05; 10177cb94ee6SHong Zhang 10182bfc04deSHong Zhang cvode->exact_final_time = PETSC_TRUE; 10192bfc04deSHong Zhang cvode->monitorstep = PETSC_FALSE; 10207cb94ee6SHong Zhang 1021a07356b8SSatish Balay ierr = MPI_Comm_dup(((PetscObject)ts)->comm,&(cvode->comm_sundials));CHKERRQ(ierr); 1022f1cd61daSJed Brown 1023f1cd61daSJed Brown cvode->mindt = -1.; 1024f1cd61daSJed Brown cvode->maxdt = -1.; 1025f1cd61daSJed Brown 10267cb94ee6SHong Zhang /* set tolerance for Sundials */ 10277cb94ee6SHong Zhang cvode->reltol = 1e-6; 10282c823083SHong Zhang cvode->abstol = 1e-6; 10297cb94ee6SHong Zhang 10307cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetType_C","TSSundialsSetType_Sundials", 10317cb94ee6SHong Zhang TSSundialsSetType_Sundials);CHKERRQ(ierr); 10327cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGMRESRestart_C", 10337cb94ee6SHong Zhang "TSSundialsSetGMRESRestart_Sundials", 10347cb94ee6SHong Zhang TSSundialsSetGMRESRestart_Sundials);CHKERRQ(ierr); 10357cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetLinearTolerance_C", 10367cb94ee6SHong Zhang "TSSundialsSetLinearTolerance_Sundials", 10377cb94ee6SHong Zhang TSSundialsSetLinearTolerance_Sundials);CHKERRQ(ierr); 10387cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGramSchmidtType_C", 10397cb94ee6SHong Zhang "TSSundialsSetGramSchmidtType_Sundials", 10407cb94ee6SHong Zhang TSSundialsSetGramSchmidtType_Sundials);CHKERRQ(ierr); 10417cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetTolerance_C", 10427cb94ee6SHong Zhang "TSSundialsSetTolerance_Sundials", 10437cb94ee6SHong Zhang TSSundialsSetTolerance_Sundials);CHKERRQ(ierr); 1044f1cd61daSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMinTimeStep_C", 1045f1cd61daSJed Brown "TSSundialsSetMinTimeStep_Sundials", 1046f1cd61daSJed Brown TSSundialsSetMinTimeStep_Sundials);CHKERRQ(ierr); 1047f1cd61daSJed Brown ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMaxTimeStep_C", 1048f1cd61daSJed Brown "TSSundialsSetMaxTimeStep_Sundials", 1049f1cd61daSJed Brown TSSundialsSetMaxTimeStep_Sundials);CHKERRQ(ierr); 10507cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetPC_C", 10517cb94ee6SHong Zhang "TSSundialsGetPC_Sundials", 10527cb94ee6SHong Zhang TSSundialsGetPC_Sundials);CHKERRQ(ierr); 10537cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetIterations_C", 10547cb94ee6SHong Zhang "TSSundialsGetIterations_Sundials", 10557cb94ee6SHong Zhang TSSundialsGetIterations_Sundials);CHKERRQ(ierr); 10567cb94ee6SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetExactFinalTime_C", 10577cb94ee6SHong Zhang "TSSundialsSetExactFinalTime_Sundials", 10587cb94ee6SHong Zhang TSSundialsSetExactFinalTime_Sundials);CHKERRQ(ierr); 10592bfc04deSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsMonitorInternalSteps_C", 10602bfc04deSHong Zhang "TSSundialsMonitorInternalSteps_Sundials", 10612bfc04deSHong Zhang TSSundialsMonitorInternalSteps_Sundials);CHKERRQ(ierr); 10622bfc04deSHong Zhang 10637cb94ee6SHong Zhang PetscFunctionReturn(0); 10647cb94ee6SHong Zhang } 10657cb94ee6SHong Zhang EXTERN_C_END 1066