xref: /petsc/src/ts/impls/implicit/sundials/sundials.c (revision 214bc6a2d8e2ea6a1f725944c2fd032dc3e2c3e7)
17cb94ee6SHong Zhang /*
2db268bfaSHong Zhang     Provides a PETSc interface to SUNDIALS/CVODE solver.
37cb94ee6SHong Zhang     The interface to PVODE (old version of CVODE) was originally contributed
47cb94ee6SHong Zhang     by Liyang Xu. It has been redone by Hong Zhang and Dinesh Kaushik.
528adb3f7SHong Zhang 
628adb3f7SHong Zhang     Reference: sundials-2.4.0/examples/cvode/parallel/cvDiurnal_kry_p.c
77cb94ee6SHong Zhang */
856a740aaSHong Zhang #include "sundials.h"  /*I "petscts.h" I*/
97cb94ee6SHong Zhang 
107cb94ee6SHong Zhang /*
117cb94ee6SHong Zhang       TSPrecond_Sundials - function that we provide to SUNDIALS to
127cb94ee6SHong Zhang                         evaluate the preconditioner.
137cb94ee6SHong Zhang */
147cb94ee6SHong Zhang #undef __FUNCT__
157cb94ee6SHong Zhang #define __FUNCT__ "TSPrecond_Sundials"
167cb94ee6SHong Zhang PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,
177cb94ee6SHong Zhang                     booleantype jok,booleantype *jcurPtr,
187cb94ee6SHong Zhang                     realtype _gamma,void *P_data,
197cb94ee6SHong Zhang                     N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3)
207cb94ee6SHong Zhang {
217cb94ee6SHong Zhang   TS             ts = (TS) P_data;
227cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
237cb94ee6SHong Zhang   PC             pc = cvode->pc;
247cb94ee6SHong Zhang   PetscErrorCode ierr;
25089b2837SJed Brown   Mat            Jac;
267cb94ee6SHong Zhang   Vec            yy = cvode->w1;
277cb94ee6SHong Zhang   PetscScalar    one = 1.0,gm;
287cb94ee6SHong Zhang   MatStructure   str = DIFFERENT_NONZERO_PATTERN;
297cb94ee6SHong Zhang   PetscScalar    *y_data;
307cb94ee6SHong Zhang 
317cb94ee6SHong Zhang   PetscFunctionBegin;
32089b2837SJed Brown   ierr = TSGetRHSJacobian(ts,PETSC_NULL,&Jac,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr);
337cb94ee6SHong Zhang   /* This allows us to construct preconditioners in-place if we like */
347cb94ee6SHong Zhang   ierr = MatSetUnfactored(Jac);CHKERRQ(ierr);
357cb94ee6SHong Zhang 
367cb94ee6SHong Zhang   /* jok - TRUE means reuse current Jacobian else recompute Jacobian */
377cb94ee6SHong Zhang   if (jok) {
387cb94ee6SHong Zhang     ierr     = MatCopy(cvode->pmat,Jac,str);CHKERRQ(ierr);
397cb94ee6SHong Zhang     *jcurPtr = FALSE;
407cb94ee6SHong Zhang   } else {
417cb94ee6SHong Zhang     /* make PETSc vector yy point to SUNDIALS vector y */
427cb94ee6SHong Zhang     y_data = (PetscScalar *) N_VGetArrayPointer(y);
437cb94ee6SHong Zhang     ierr   = VecPlaceArray(yy,y_data); CHKERRQ(ierr);
444ac7836bSHong Zhang 
457cb94ee6SHong Zhang     /* compute the Jacobian */
467cb94ee6SHong Zhang     ierr = TSComputeRHSJacobian(ts,ts->ptime,yy,&Jac,&Jac,&str);CHKERRQ(ierr);
477cb94ee6SHong Zhang     ierr = VecResetArray(yy); CHKERRQ(ierr);
484ac7836bSHong Zhang 
497cb94ee6SHong Zhang     /* copy the Jacobian matrix */
507cb94ee6SHong Zhang     if (!cvode->pmat) {
517cb94ee6SHong Zhang       ierr = MatDuplicate(Jac,MAT_COPY_VALUES,&cvode->pmat);CHKERRQ(ierr);
527cb94ee6SHong Zhang       ierr = PetscLogObjectParent(ts,cvode->pmat);CHKERRQ(ierr);
532c823083SHong Zhang     } else {
547cb94ee6SHong Zhang       ierr = MatCopy(Jac,cvode->pmat,str);CHKERRQ(ierr);
557cb94ee6SHong Zhang     }
567cb94ee6SHong Zhang     *jcurPtr = TRUE;
577cb94ee6SHong Zhang   }
587cb94ee6SHong Zhang 
597cb94ee6SHong Zhang   /* construct I-gamma*Jac  */
607cb94ee6SHong Zhang   gm   = -_gamma;
617cb94ee6SHong Zhang   ierr = MatScale(Jac,gm);CHKERRQ(ierr);
627cb94ee6SHong Zhang   ierr = MatShift(Jac,one);CHKERRQ(ierr);
637cb94ee6SHong Zhang 
647cb94ee6SHong Zhang   ierr = PCSetOperators(pc,Jac,Jac,str);CHKERRQ(ierr);
657cb94ee6SHong Zhang   PetscFunctionReturn(0);
667cb94ee6SHong Zhang }
677cb94ee6SHong Zhang 
687cb94ee6SHong Zhang /*
697cb94ee6SHong Zhang      TSPSolve_Sundials -  routine that we provide to Sundials that applies the preconditioner.
707cb94ee6SHong Zhang */
717cb94ee6SHong Zhang #undef __FUNCT__
727cb94ee6SHong Zhang #define __FUNCT__ "TSPSolve_Sundials"
734ac7836bSHong Zhang PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z,
744ac7836bSHong Zhang                                  realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp)
757cb94ee6SHong Zhang {
767cb94ee6SHong Zhang   TS              ts = (TS) P_data;
777cb94ee6SHong Zhang   TS_Sundials     *cvode = (TS_Sundials*)ts->data;
787cb94ee6SHong Zhang   PC              pc = cvode->pc;
797cb94ee6SHong Zhang   Vec             rr = cvode->w1,zz = cvode->w2;
807cb94ee6SHong Zhang   PetscErrorCode  ierr;
817cb94ee6SHong Zhang   PetscScalar     *r_data,*z_data;
827cb94ee6SHong Zhang 
837cb94ee6SHong Zhang   PetscFunctionBegin;
847cb94ee6SHong Zhang   /* Make the PETSc work vectors rr and zz point to the arrays in the SUNDIALS vectors r and z respectively*/
857cb94ee6SHong Zhang   r_data  = (PetscScalar *) N_VGetArrayPointer(r);
867cb94ee6SHong Zhang   z_data  = (PetscScalar *) N_VGetArrayPointer(z);
877cb94ee6SHong Zhang   ierr = VecPlaceArray(rr,r_data); CHKERRQ(ierr);
887cb94ee6SHong Zhang   ierr = VecPlaceArray(zz,z_data); CHKERRQ(ierr);
894ac7836bSHong Zhang 
907cb94ee6SHong Zhang   /* Solve the Px=r and put the result in zz */
917cb94ee6SHong Zhang   ierr = PCApply(pc,rr,zz); CHKERRQ(ierr);
927cb94ee6SHong Zhang   ierr = VecResetArray(rr); CHKERRQ(ierr);
937cb94ee6SHong Zhang   ierr = VecResetArray(zz); CHKERRQ(ierr);
947cb94ee6SHong Zhang   PetscFunctionReturn(0);
957cb94ee6SHong Zhang }
967cb94ee6SHong Zhang 
977cb94ee6SHong Zhang /*
987cb94ee6SHong Zhang         TSFunction_Sundials - routine that we provide to Sundials that applies the right hand side.
997cb94ee6SHong Zhang */
1007cb94ee6SHong Zhang #undef __FUNCT__
1017cb94ee6SHong Zhang #define __FUNCT__ "TSFunction_Sundials"
1024ac7836bSHong Zhang int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx)
1037cb94ee6SHong Zhang {
1047cb94ee6SHong Zhang   TS              ts = (TS) ctx;
1057adad957SLisandro Dalcin   MPI_Comm        comm = ((PetscObject)ts)->comm;
1067cb94ee6SHong Zhang   TS_Sundials     *cvode = (TS_Sundials*)ts->data;
1077cb94ee6SHong Zhang   Vec             yy = cvode->w1,yyd = cvode->w2;
1087cb94ee6SHong Zhang   PetscScalar     *y_data,*ydot_data;
1097cb94ee6SHong Zhang   PetscErrorCode  ierr;
1107cb94ee6SHong Zhang 
1117cb94ee6SHong Zhang   PetscFunctionBegin;
1125ff03cf7SDinesh Kaushik   /* Make the PETSc work vectors yy and yyd point to the arrays in the SUNDIALS vectors y and ydot respectively*/
1137cb94ee6SHong Zhang   y_data     = (PetscScalar *) N_VGetArrayPointer(y);
1147cb94ee6SHong Zhang   ydot_data  = (PetscScalar *) N_VGetArrayPointer(ydot);
1154ac7836bSHong Zhang   ierr = VecPlaceArray(yy,y_data);CHKERRABORT(comm,ierr);
1164ac7836bSHong Zhang   ierr = VecPlaceArray(yyd,ydot_data); CHKERRABORT(comm,ierr);
1174ac7836bSHong Zhang 
1187cb94ee6SHong Zhang   /* now compute the right hand side function */
1197cb94ee6SHong Zhang   ierr = TSComputeRHSFunction(ts,t,yy,yyd); CHKERRABORT(comm,ierr);
1207cb94ee6SHong Zhang   ierr = VecResetArray(yy); CHKERRABORT(comm,ierr);
1217cb94ee6SHong Zhang   ierr = VecResetArray(yyd); CHKERRABORT(comm,ierr);
1224ac7836bSHong Zhang   PetscFunctionReturn(0);
1237cb94ee6SHong Zhang }
1247cb94ee6SHong Zhang 
1257cb94ee6SHong Zhang /*
126*214bc6a2SJed Brown        TSStep_Sundials - Calls Sundials to integrate the ODE.
1277cb94ee6SHong Zhang */
1287cb94ee6SHong Zhang #undef __FUNCT__
129*214bc6a2SJed Brown #define __FUNCT__ "TSStep_Sundials"
130*214bc6a2SJed Brown PetscErrorCode TSStep_Sundials(TS ts,int *steps,double *time)
1317cb94ee6SHong Zhang {
1327cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
1337cb94ee6SHong Zhang   Vec            sol = ts->vec_sol;
1347cb94ee6SHong Zhang   PetscErrorCode ierr;
135186e87acSLisandro Dalcin   PetscInt       i,flag;
1369f94935aSHong Zhang   long int       its,nsteps;
1377cb94ee6SHong Zhang   realtype       t,tout;
1387cb94ee6SHong Zhang   PetscScalar    *y_data;
1397cb94ee6SHong Zhang   void           *mem;
1407cb94ee6SHong Zhang 
1417cb94ee6SHong Zhang   PetscFunctionBegin;
14216016685SHong Zhang   mem  = cvode->mem;
1437cb94ee6SHong Zhang   tout = ts->max_time;
1447cb94ee6SHong Zhang   ierr = VecGetArray(ts->vec_sol,&y_data);CHKERRQ(ierr);
1457cb94ee6SHong Zhang   N_VSetArrayPointer((realtype *)y_data,cvode->y);
1467cb94ee6SHong Zhang   ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr);
147186e87acSLisandro Dalcin 
148186e87acSLisandro Dalcin   for (i = 0; i < ts->max_steps; i++) {
1497cb94ee6SHong Zhang     if (ts->ptime >= ts->max_time) break;
1503f2090d5SJed Brown     ierr = TSPreStep(ts);CHKERRQ(ierr);
151186e87acSLisandro Dalcin 
1522bfc04deSHong Zhang     if (cvode->monitorstep) {
15328adb3f7SHong Zhang       flag = CVode(mem,tout,cvode->y,&t,CV_ONE_STEP);
1542bfc04deSHong Zhang     } else {
1552bfc04deSHong Zhang       flag = CVode(mem,tout,cvode->y,&t,CV_NORMAL);
1562bfc04deSHong Zhang     }
1579f94935aSHong Zhang 
1589f94935aSHong Zhang     if (flag){ /* display error message */
1599f94935aSHong Zhang       switch (flag){
1609f94935aSHong Zhang       case CV_ILL_INPUT:
1619f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ILL_INPUT");
1629f94935aSHong Zhang         break;
1639f94935aSHong Zhang       case CV_TOO_CLOSE:
1649f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_CLOSE");
1659f94935aSHong Zhang         break;
1663c7fefeeSJed Brown       case CV_TOO_MUCH_WORK: {
1679f94935aSHong Zhang         PetscReal      tcur;
1689f94935aSHong Zhang         ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr);
1699f94935aSHong Zhang         ierr = CVodeGetCurrentTime(mem,&tcur);CHKERRQ(ierr);
1709f94935aSHong Zhang         SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_WORK. At t=%G, nsteps %D exceeds mxstep %D. Increase '-ts_max_steps <>' or modify TSSetDuration()",tcur,nsteps,ts->max_steps);
1713c7fefeeSJed Brown       } break;
1729f94935aSHong Zhang       case CV_TOO_MUCH_ACC:
1739f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_TOO_MUCH_ACC");
1749f94935aSHong Zhang         break;
1759f94935aSHong Zhang       case CV_ERR_FAILURE:
1769f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_ERR_FAILURE");
1779f94935aSHong Zhang         break;
1789f94935aSHong Zhang       case CV_CONV_FAILURE:
1799f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_CONV_FAILURE");
1809f94935aSHong Zhang         break;
1819f94935aSHong Zhang       case CV_LINIT_FAIL:
1829f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LINIT_FAIL");
1839f94935aSHong Zhang         break;
1849f94935aSHong Zhang       case CV_LSETUP_FAIL:
1859f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSETUP_FAIL");
1869f94935aSHong Zhang         break;
1879f94935aSHong Zhang       case CV_LSOLVE_FAIL:
1889f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_LSOLVE_FAIL");
1899f94935aSHong Zhang         break;
1909f94935aSHong Zhang       case CV_RHSFUNC_FAIL:
1919f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RHSFUNC_FAIL");
1929f94935aSHong Zhang         break;
1939f94935aSHong Zhang       case CV_FIRST_RHSFUNC_ERR:
1949f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_FIRST_RHSFUNC_ERR");
1959f94935aSHong Zhang         break;
1969f94935aSHong Zhang       case CV_REPTD_RHSFUNC_ERR:
1979f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_REPTD_RHSFUNC_ERR");
1989f94935aSHong Zhang         break;
1999f94935aSHong Zhang       case CV_UNREC_RHSFUNC_ERR:
2009f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_UNREC_RHSFUNC_ERR");
2019f94935aSHong Zhang         break;
2029f94935aSHong Zhang       case CV_RTFUNC_FAIL:
2039f94935aSHong Zhang         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, CV_RTFUNC_FAIL");
2049f94935aSHong Zhang         break;
2059f94935aSHong Zhang       default:
2069f94935aSHong Zhang         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVode() fails, flag %d",flag);
2079f94935aSHong Zhang       }
2089f94935aSHong Zhang     }
2099f94935aSHong Zhang 
2107cb94ee6SHong Zhang     if (t > ts->max_time && cvode->exact_final_time) {
2117cb94ee6SHong Zhang       /* interpolate to final requested time */
2127cb94ee6SHong Zhang       ierr = CVodeGetDky(mem,tout,0,cvode->y);CHKERRQ(ierr);
2137cb94ee6SHong Zhang       t = tout;
2147cb94ee6SHong Zhang     }
2157cb94ee6SHong Zhang 
2167cb94ee6SHong Zhang     /* copy the solution from cvode->y to cvode->update and sol */
2177cb94ee6SHong Zhang     ierr = VecPlaceArray(cvode->w1,y_data); CHKERRQ(ierr);
2187cb94ee6SHong Zhang     ierr = VecCopy(cvode->w1,cvode->update);CHKERRQ(ierr);
2197cb94ee6SHong Zhang     ierr = VecResetArray(cvode->w1); CHKERRQ(ierr);
2207cb94ee6SHong Zhang     ierr = VecCopy(cvode->update,sol);CHKERRQ(ierr);
2217cb94ee6SHong Zhang     ierr = CVodeGetNumNonlinSolvIters(mem,&its);CHKERRQ(ierr);
2224ac7836bSHong Zhang     ierr = CVSpilsGetNumLinIters(mem, &its);
223186e87acSLisandro Dalcin     ts->nonlinear_its = its; ts->linear_its = its;
224186e87acSLisandro Dalcin 
225186e87acSLisandro Dalcin     ts->time_step = t - ts->ptime;
226186e87acSLisandro Dalcin     ts->ptime     = t;
2277cb94ee6SHong Zhang     ts->steps++;
228186e87acSLisandro Dalcin 
2293f2090d5SJed Brown     ierr = TSPostStep(ts);CHKERRQ(ierr);
2307cb94ee6SHong Zhang     ierr = TSMonitor(ts,ts->steps,t,sol);CHKERRQ(ierr);
2317cb94ee6SHong Zhang   }
2329f94935aSHong Zhang   ierr = CVodeGetNumSteps(mem,&nsteps);CHKERRQ(ierr);
233186e87acSLisandro Dalcin 
2349f94935aSHong Zhang   *steps = nsteps;
2357cb94ee6SHong Zhang   *time  = t;
2367cb94ee6SHong Zhang   PetscFunctionReturn(0);
2377cb94ee6SHong Zhang }
2387cb94ee6SHong Zhang 
2397cb94ee6SHong Zhang #undef __FUNCT__
240277b19d0SLisandro Dalcin #define __FUNCT__ "TSReset_Sundials"
241277b19d0SLisandro Dalcin PetscErrorCode TSReset_Sundials(TS ts)
242277b19d0SLisandro Dalcin {
243277b19d0SLisandro Dalcin   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
244277b19d0SLisandro Dalcin   PetscErrorCode ierr;
245277b19d0SLisandro Dalcin 
246277b19d0SLisandro Dalcin   PetscFunctionBegin;
247277b19d0SLisandro Dalcin   if (cvode->pc)     {ierr = PCReset(cvode->pc);CHKERRQ(ierr);}
248d155d410SJed Brown   ierr = MatDestroy(&cvode->pmat);
249d155d410SJed Brown   ierr = VecDestroy(&cvode->update);
250d155d410SJed Brown   ierr = VecDestroy(&cvode->func);
251d155d410SJed Brown   ierr = VecDestroy(&cvode->rhs);
252d155d410SJed Brown   ierr = VecDestroy(&cvode->w1);
253d155d410SJed Brown   ierr = VecDestroy(&cvode->w2);
254277b19d0SLisandro Dalcin   if (cvode->mem)    {CVodeFree(&cvode->mem);}
255277b19d0SLisandro Dalcin   PetscFunctionReturn(0);
256277b19d0SLisandro Dalcin }
257277b19d0SLisandro Dalcin 
258277b19d0SLisandro Dalcin #undef __FUNCT__
2597cb94ee6SHong Zhang #define __FUNCT__ "TSDestroy_Sundials"
2607cb94ee6SHong Zhang PetscErrorCode TSDestroy_Sundials(TS ts)
2617cb94ee6SHong Zhang {
2627cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
2637cb94ee6SHong Zhang   PetscErrorCode ierr;
2647cb94ee6SHong Zhang 
2657cb94ee6SHong Zhang   PetscFunctionBegin;
266277b19d0SLisandro Dalcin   ierr = TSReset_Sundials(ts);CHKERRQ(ierr);
267d155d410SJed Brown   ierr = PCDestroy(&cvode->pc);CHKERRQ(ierr);
268a07356b8SSatish Balay   ierr = MPI_Comm_free(&(cvode->comm_sundials));CHKERRQ(ierr);
269277b19d0SLisandro Dalcin   ierr = PetscFree(ts->data);CHKERRQ(ierr);
2707cb94ee6SHong Zhang   PetscFunctionReturn(0);
2717cb94ee6SHong Zhang }
2727cb94ee6SHong Zhang 
2737cb94ee6SHong Zhang #undef __FUNCT__
274*214bc6a2SJed Brown #define __FUNCT__ "TSSetUp_Sundials"
275*214bc6a2SJed Brown PetscErrorCode TSSetUp_Sundials(TS ts)
2767cb94ee6SHong Zhang {
2777cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
2787cb94ee6SHong Zhang   PetscErrorCode ierr;
27916016685SHong Zhang   PetscInt       glosize,locsize,i,flag;
2807cb94ee6SHong Zhang   PetscScalar    *y_data,*parray;
28116016685SHong Zhang   void           *mem;
28216016685SHong Zhang   const PCType   pctype;
283ace3abfcSBarry Smith   PetscBool      pcnone;
28416016685SHong Zhang   Vec            sol = ts->vec_sol;
2857cb94ee6SHong Zhang 
2867cb94ee6SHong Zhang   PetscFunctionBegin;
2877cb94ee6SHong Zhang   ierr = PCSetFromOptions(cvode->pc);CHKERRQ(ierr);
2889f94935aSHong Zhang 
2897cb94ee6SHong Zhang   /* get the vector size */
2907cb94ee6SHong Zhang   ierr = VecGetSize(ts->vec_sol,&glosize);CHKERRQ(ierr);
2917cb94ee6SHong Zhang   ierr = VecGetLocalSize(ts->vec_sol,&locsize);CHKERRQ(ierr);
2927cb94ee6SHong Zhang 
2937cb94ee6SHong Zhang   /* allocate the memory for N_Vec y */
294a07356b8SSatish Balay   cvode->y = N_VNew_Parallel(cvode->comm_sundials,locsize,glosize);
295e32f2f54SBarry Smith   if (!cvode->y) SETERRQ(PETSC_COMM_SELF,1,"cvode->y is not allocated");
2967cb94ee6SHong Zhang 
29728adb3f7SHong Zhang   /* initialize N_Vec y: copy ts->vec_sol to cvode->y */
2987cb94ee6SHong Zhang   ierr = VecGetArray(ts->vec_sol,&parray);CHKERRQ(ierr);
2997cb94ee6SHong Zhang   y_data = (PetscScalar *) N_VGetArrayPointer(cvode->y);
3007cb94ee6SHong Zhang   for (i = 0; i < locsize; i++) y_data[i] = parray[i];
3017cb94ee6SHong Zhang   /*ierr = PetscMemcpy(y_data,parray,locsize*sizeof(PETSC_SCALAR)); CHKERRQ(ierr);*/
3027cb94ee6SHong Zhang   ierr = VecRestoreArray(ts->vec_sol,PETSC_NULL);CHKERRQ(ierr);
3037cb94ee6SHong Zhang   ierr = VecDuplicate(ts->vec_sol,&cvode->update);CHKERRQ(ierr);
3047cb94ee6SHong Zhang   ierr = VecDuplicate(ts->vec_sol,&cvode->func);CHKERRQ(ierr);
3057cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->update);CHKERRQ(ierr);
3067cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->func);CHKERRQ(ierr);
3077cb94ee6SHong Zhang 
3087cb94ee6SHong Zhang   /*
3097cb94ee6SHong Zhang     Create work vectors for the TSPSolve_Sundials() routine. Note these are
3107cb94ee6SHong Zhang     allocated with zero space arrays because the actual array space is provided
3117cb94ee6SHong Zhang     by Sundials and set using VecPlaceArray().
3127cb94ee6SHong Zhang   */
3137adad957SLisandro Dalcin   ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w1);CHKERRQ(ierr);
3147adad957SLisandro Dalcin   ierr = VecCreateMPIWithArray(((PetscObject)ts)->comm,locsize,PETSC_DECIDE,0,&cvode->w2);CHKERRQ(ierr);
3157cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->w1);CHKERRQ(ierr);
3167cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->w2);CHKERRQ(ierr);
31716016685SHong Zhang 
31816016685SHong Zhang   /* Call CVodeCreate to create the solver memory and the use of a Newton iteration */
31916016685SHong Zhang   mem = CVodeCreate(cvode->cvode_type, CV_NEWTON);
320e32f2f54SBarry Smith   if (!mem) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MEM,"CVodeCreate() fails");
32116016685SHong Zhang   cvode->mem = mem;
32216016685SHong Zhang 
32316016685SHong Zhang   /* Set the pointer to user-defined data */
32416016685SHong Zhang   flag = CVodeSetUserData(mem, ts);
325e32f2f54SBarry Smith   if (flag) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSetUserData() fails");
32616016685SHong Zhang 
327fc6b9e64SJed Brown   /* Sundials may choose to use a smaller initial step, but will never use a larger step. */
328fc6b9e64SJed Brown   flag = CVodeSetInitStep(mem,(realtype)ts->initial_time_step);
329fc6b9e64SJed Brown   if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetInitStep() failed");
330f1cd61daSJed Brown   if (cvode->mindt > 0) {
331f1cd61daSJed Brown     flag = CVodeSetMinStep(mem,(realtype)cvode->mindt);
3329f94935aSHong Zhang     if (flag){
3339f94935aSHong Zhang       if (flag == CV_MEM_NULL){
3349f94935aSHong Zhang         SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, cvode_mem pointer is NULL");
3359f94935aSHong Zhang       } else if (flag == CV_ILL_INPUT){
3369f94935aSHong Zhang         SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed, hmin is nonpositive or it exceeds the maximum allowable step size");
3379f94935aSHong Zhang       } else {
3389f94935aSHong Zhang         SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMinStep() failed");
3399f94935aSHong Zhang       }
3409f94935aSHong Zhang     }
341f1cd61daSJed Brown   }
342f1cd61daSJed Brown   if (cvode->maxdt > 0) {
343f1cd61daSJed Brown     flag = CVodeSetMaxStep(mem,(realtype)cvode->maxdt);
344f1cd61daSJed Brown     if (flag) SETERRQ(((PetscObject)ts)->comm,PETSC_ERR_LIB,"CVodeSetMaxStep() failed");
345f1cd61daSJed Brown   }
346f1cd61daSJed Brown 
34716016685SHong Zhang   /* Call CVodeInit to initialize the integrator memory and specify the
34816016685SHong Zhang    * user's right hand side function in u'=f(t,u), the inital time T0, and
34916016685SHong Zhang    * the initial dependent variable vector cvode->y */
35016016685SHong Zhang   flag = CVodeInit(mem,TSFunction_Sundials,ts->ptime,cvode->y);
35116016685SHong Zhang   if (flag){
352e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeInit() fails, flag %d",flag);
35316016685SHong Zhang   }
35416016685SHong Zhang 
3559f94935aSHong Zhang   /* specifies scalar relative and absolute tolerances */
35616016685SHong Zhang   flag = CVodeSStolerances(mem,cvode->reltol,cvode->abstol);
35716016685SHong Zhang   if (flag){
358e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVodeSStolerances() fails, flag %d",flag);
35916016685SHong Zhang   }
36016016685SHong Zhang 
3619f94935aSHong Zhang   /* Specify max num of steps to be taken by cvode in its attempt to reach the next output time */
3629f94935aSHong Zhang   flag = CVodeSetMaxNumSteps(mem,ts->max_steps);
36316016685SHong Zhang   ierr = TSMonitor(ts,ts->steps,ts->ptime,sol);CHKERRQ(ierr);
36416016685SHong Zhang 
36516016685SHong Zhang   /* call CVSpgmr to use GMRES as the linear solver.        */
36616016685SHong Zhang   /* setup the ode integrator with the given preconditioner */
36716016685SHong Zhang   ierr = PCGetType(cvode->pc,&pctype);CHKERRQ(ierr);
36816016685SHong Zhang   ierr = PetscTypeCompare((PetscObject)cvode->pc,PCNONE,&pcnone);CHKERRQ(ierr);
36916016685SHong Zhang   if (pcnone){
37016016685SHong Zhang     flag  = CVSpgmr(mem,PREC_NONE,0);
371e32f2f54SBarry Smith     if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag);
37216016685SHong Zhang   } else {
37316016685SHong Zhang     flag  = CVSpgmr(mem,PREC_LEFT,0);
374e32f2f54SBarry Smith     if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmr() fails, flag %d",flag);
37516016685SHong Zhang 
37616016685SHong Zhang     /* Set preconditioner and solve routines Precond and PSolve,
37716016685SHong Zhang      and the pointer to the user-defined block data */
37816016685SHong Zhang     flag = CVSpilsSetPreconditioner(mem,TSPrecond_Sundials,TSPSolve_Sundials);
379e32f2f54SBarry Smith     if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpilsSetPreconditioner() fails, flag %d", flag);
38016016685SHong Zhang   }
38116016685SHong Zhang 
38216016685SHong Zhang   flag = CVSpilsSetGSType(mem, MODIFIED_GS);
383e32f2f54SBarry Smith   if (flag) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"CVSpgmrSetGSType() fails, flag %d",flag);
3847cb94ee6SHong Zhang   PetscFunctionReturn(0);
3857cb94ee6SHong Zhang }
3867cb94ee6SHong Zhang 
3876fadb2cdSHong Zhang /* type of CVODE linear multistep method */
388dfcd32c8SHong Zhang const char *TSSundialsLmmTypes[] = {"","adams","bdf","TSSundialsLmmType","SUNDIALS_",0};
3896fadb2cdSHong Zhang /* type of G-S orthogonalization used by CVODE linear solver */
390dfcd32c8SHong Zhang const char *TSSundialsGramSchmidtTypes[] = {"","modified","classical","TSSundialsGramSchmidtType","SUNDIALS_",0};
391a04cf4d8SBarry Smith 
3927cb94ee6SHong Zhang #undef __FUNCT__
393*214bc6a2SJed Brown #define __FUNCT__ "TSSetFromOptions_Sundials"
394*214bc6a2SJed Brown PetscErrorCode TSSetFromOptions_Sundials(TS ts)
3957cb94ee6SHong Zhang {
3967cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
3977cb94ee6SHong Zhang   PetscErrorCode ierr;
3987cb94ee6SHong Zhang   int            indx;
399ace3abfcSBarry Smith   PetscBool      flag;
4007cb94ee6SHong Zhang 
4017cb94ee6SHong Zhang   PetscFunctionBegin;
4027cb94ee6SHong Zhang   ierr = PetscOptionsHead("SUNDIALS ODE solver options");CHKERRQ(ierr);
4036fadb2cdSHong Zhang     ierr = PetscOptionsEList("-ts_sundials_type","Scheme","TSSundialsSetType",TSSundialsLmmTypes,3,TSSundialsLmmTypes[cvode->cvode_type],&indx,&flag);CHKERRQ(ierr);
4047cb94ee6SHong Zhang     if (flag) {
4056fadb2cdSHong Zhang       ierr = TSSundialsSetType(ts,(TSSundialsLmmType)indx);CHKERRQ(ierr);
4067cb94ee6SHong Zhang     }
4076fadb2cdSHong Zhang     ierr = PetscOptionsEList("-ts_sundials_gramschmidt_type","Type of orthogonalization","TSSundialsSetGramSchmidtType",TSSundialsGramSchmidtTypes,3,TSSundialsGramSchmidtTypes[cvode->gtype],&indx,&flag);CHKERRQ(ierr);
4087cb94ee6SHong Zhang     if (flag) {
4097cb94ee6SHong Zhang       ierr = TSSundialsSetGramSchmidtType(ts,(TSSundialsGramSchmidtType)indx);CHKERRQ(ierr);
4107cb94ee6SHong Zhang     }
4117cb94ee6SHong Zhang     ierr = PetscOptionsReal("-ts_sundials_atol","Absolute tolerance for convergence","TSSundialsSetTolerance",cvode->abstol,&cvode->abstol,PETSC_NULL);CHKERRQ(ierr);
4127cb94ee6SHong Zhang     ierr = PetscOptionsReal("-ts_sundials_rtol","Relative tolerance for convergence","TSSundialsSetTolerance",cvode->reltol,&cvode->reltol,PETSC_NULL);CHKERRQ(ierr);
413f1cd61daSJed Brown     ierr = PetscOptionsReal("-ts_sundials_mindt","Minimum step size","TSSundialsSetMinTimeStep",cvode->mindt,&cvode->mindt,PETSC_NULL);CHKERRQ(ierr);
414f1cd61daSJed Brown     ierr = PetscOptionsReal("-ts_sundials_maxdt","Maximum step size","TSSundialsSetMaxTimeStep",cvode->maxdt,&cvode->maxdt,PETSC_NULL);CHKERRQ(ierr);
4157cb94ee6SHong Zhang     ierr = PetscOptionsReal("-ts_sundials_linear_tolerance","Convergence tolerance for linear solve","TSSundialsSetLinearTolerance",cvode->linear_tol,&cvode->linear_tol,&flag);CHKERRQ(ierr);
4167cb94ee6SHong Zhang     ierr = PetscOptionsInt("-ts_sundials_gmres_restart","Number of GMRES orthogonalization directions","TSSundialsSetGMRESRestart",cvode->restart,&cvode->restart,&flag);CHKERRQ(ierr);
417acfcf0e5SJed Brown     ierr = PetscOptionsBool("-ts_sundials_exact_final_time","Interpolate output to stop exactly at the final time","TSSundialsSetExactFinalTime",cvode->exact_final_time,&cvode->exact_final_time,PETSC_NULL);CHKERRQ(ierr);
418acfcf0e5SJed Brown     ierr = PetscOptionsBool("-ts_sundials_monitor_steps","Monitor SUNDIALS internel steps","TSSundialsMonitorInternalSteps",cvode->monitorstep,&cvode->monitorstep,PETSC_NULL);CHKERRQ(ierr);
4197cb94ee6SHong Zhang   ierr = PetscOptionsTail();CHKERRQ(ierr);
4207cb94ee6SHong Zhang   PetscFunctionReturn(0);
4217cb94ee6SHong Zhang }
4227cb94ee6SHong Zhang 
4237cb94ee6SHong Zhang #undef __FUNCT__
4247cb94ee6SHong Zhang #define __FUNCT__ "TSView_Sundials"
4257cb94ee6SHong Zhang PetscErrorCode TSView_Sundials(TS ts,PetscViewer viewer)
4267cb94ee6SHong Zhang {
4277cb94ee6SHong Zhang   TS_Sundials    *cvode = (TS_Sundials*)ts->data;
4287cb94ee6SHong Zhang   PetscErrorCode ierr;
4297cb94ee6SHong Zhang   char           *type;
4307cb94ee6SHong Zhang   char           atype[] = "Adams";
4317cb94ee6SHong Zhang   char           btype[] = "BDF: backward differentiation formula";
432ace3abfcSBarry Smith   PetscBool      iascii,isstring;
4332c823083SHong Zhang   long int       nsteps,its,nfevals,nlinsetups,nfails,itmp;
4342c823083SHong Zhang   PetscInt       qlast,qcur;
4355d47aee6SHong Zhang   PetscReal      hinused,hlast,hcur,tcur,tolsfac;
4367cb94ee6SHong Zhang 
4377cb94ee6SHong Zhang   PetscFunctionBegin;
4387cb94ee6SHong Zhang   if (cvode->cvode_type == SUNDIALS_ADAMS) {type = atype;}
4397cb94ee6SHong Zhang   else                                     {type = btype;}
4407cb94ee6SHong Zhang 
4412692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
4422692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr);
4437cb94ee6SHong Zhang   if (iascii) {
4447cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater does not use SNES!\n");CHKERRQ(ierr);
4457cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials integrater type %s\n",type);CHKERRQ(ierr);
4467cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials abs tol %g rel tol %g\n",cvode->abstol,cvode->reltol);CHKERRQ(ierr);
4477cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials linear solver tolerance factor %g\n",cvode->linear_tol);CHKERRQ(ierr);
4487cb94ee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials GMRES max iterations (same as restart in SUNDIALS) %D\n",cvode->restart);CHKERRQ(ierr);
4497cb94ee6SHong Zhang     if (cvode->gtype == SUNDIALS_MODIFIED_GS) {
4507cb94ee6SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Sundials using modified Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr);
4517cb94ee6SHong Zhang     } else {
4527cb94ee6SHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"Sundials using unmodified (classical) Gram-Schmidt for orthogonalization in GMRES\n");CHKERRQ(ierr);
4537cb94ee6SHong Zhang     }
454f1cd61daSJed Brown     if (cvode->mindt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials minimum time step %g\n",cvode->mindt);CHKERRQ(ierr);}
455f1cd61daSJed Brown     if (cvode->maxdt > 0) {ierr = PetscViewerASCIIPrintf(viewer,"Sundials maximum time step %g\n",cvode->maxdt);CHKERRQ(ierr);}
4562c823083SHong Zhang 
4575d47aee6SHong Zhang     /* Outputs from CVODE, CVSPILS */
4585d47aee6SHong Zhang     ierr = CVodeGetTolScaleFactor(cvode->mem,&tolsfac);CHKERRQ(ierr);
4595d47aee6SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials suggested factor for tolerance scaling %g\n",tolsfac);CHKERRQ(ierr);
4602c823083SHong Zhang     ierr = CVodeGetIntegratorStats(cvode->mem,&nsteps,&nfevals,
4612c823083SHong Zhang                                    &nlinsetups,&nfails,&qlast,&qcur,
4622c823083SHong Zhang                                    &hinused,&hlast,&hcur,&tcur);CHKERRQ(ierr);
4632c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials cumulative number of internal steps %D\n",nsteps);CHKERRQ(ierr);
4642c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to rhs function %D\n",nfevals);CHKERRQ(ierr);
4652c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of calls to linear solver setup function %D\n",nlinsetups);CHKERRQ(ierr);
4662c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of error test failures %D\n",nfails);CHKERRQ(ierr);
4672c823083SHong Zhang 
4682c823083SHong Zhang     ierr = CVodeGetNonlinSolvStats(cvode->mem,&its,&nfails);CHKERRQ(ierr);
4692c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear solver iterations %D\n",its);CHKERRQ(ierr);
4702c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of nonlinear convergence failure %D\n",nfails);CHKERRQ(ierr);
4712c823083SHong Zhang 
4722c823083SHong Zhang     ierr = CVSpilsGetNumLinIters(cvode->mem, &its);CHKERRQ(ierr); /* its = no. of calls to TSPrecond_Sundials() */
4732c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear iterations %D\n",its);CHKERRQ(ierr);
4742c823083SHong Zhang     ierr = CVSpilsGetNumConvFails(cvode->mem,&itmp);CHKERRQ(ierr);
4752c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of linear convergence failures %D\n",itmp);CHKERRQ(ierr);
4762c823083SHong Zhang     ierr = CVSpilsGetNumPrecEvals(cvode->mem,&itmp);CHKERRQ(ierr);
4772c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner evaluations %D\n",itmp);CHKERRQ(ierr);
4782c823083SHong Zhang     ierr = CVSpilsGetNumPrecSolves(cvode->mem,&itmp);CHKERRQ(ierr);
4792c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of preconditioner solves %D\n",itmp);CHKERRQ(ierr);
4802c823083SHong Zhang     ierr = CVSpilsGetNumJtimesEvals(cvode->mem,&itmp);CHKERRQ(ierr);
4812c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of Jacobian-vector product evaluations %D\n",itmp);CHKERRQ(ierr);
4822c823083SHong Zhang     ierr = CVSpilsGetNumRhsEvals(cvode->mem,&itmp);CHKERRQ(ierr);
4832c823083SHong Zhang     ierr = PetscViewerASCIIPrintf(viewer,"Sundials no. of rhs calls for finite diff. Jacobian-vector evals %D\n",itmp);CHKERRQ(ierr);
4847cb94ee6SHong Zhang   } else if (isstring) {
4857cb94ee6SHong Zhang     ierr = PetscViewerStringSPrintf(viewer,"Sundials type %s",type);CHKERRQ(ierr);
4867cb94ee6SHong Zhang   } else {
487e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported by TS Sundials",((PetscObject)viewer)->type_name);
4887cb94ee6SHong Zhang   }
4897cb94ee6SHong Zhang   ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
4907cb94ee6SHong Zhang   ierr = PCView(cvode->pc,viewer);CHKERRQ(ierr);
4917cb94ee6SHong Zhang   ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
4927cb94ee6SHong Zhang   PetscFunctionReturn(0);
4937cb94ee6SHong Zhang }
4947cb94ee6SHong Zhang 
4957cb94ee6SHong Zhang 
4967cb94ee6SHong Zhang /* --------------------------------------------------------------------------*/
4977cb94ee6SHong Zhang EXTERN_C_BEGIN
4987cb94ee6SHong Zhang #undef __FUNCT__
4997cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType_Sundials"
5007087cfbeSBarry Smith PetscErrorCode  TSSundialsSetType_Sundials(TS ts,TSSundialsLmmType type)
5017cb94ee6SHong Zhang {
5027cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5037cb94ee6SHong Zhang 
5047cb94ee6SHong Zhang   PetscFunctionBegin;
5057cb94ee6SHong Zhang   cvode->cvode_type = type;
5067cb94ee6SHong Zhang   PetscFunctionReturn(0);
5077cb94ee6SHong Zhang }
5087cb94ee6SHong Zhang EXTERN_C_END
5097cb94ee6SHong Zhang 
5107cb94ee6SHong Zhang EXTERN_C_BEGIN
5117cb94ee6SHong Zhang #undef __FUNCT__
5127cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart_Sundials"
5137087cfbeSBarry Smith PetscErrorCode  TSSundialsSetGMRESRestart_Sundials(TS ts,int restart)
5147cb94ee6SHong Zhang {
5157cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5167cb94ee6SHong Zhang 
5177cb94ee6SHong Zhang   PetscFunctionBegin;
5187cb94ee6SHong Zhang   cvode->restart = restart;
5197cb94ee6SHong Zhang   PetscFunctionReturn(0);
5207cb94ee6SHong Zhang }
5217cb94ee6SHong Zhang EXTERN_C_END
5227cb94ee6SHong Zhang 
5237cb94ee6SHong Zhang EXTERN_C_BEGIN
5247cb94ee6SHong Zhang #undef __FUNCT__
5257cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance_Sundials"
5267087cfbeSBarry Smith PetscErrorCode  TSSundialsSetLinearTolerance_Sundials(TS ts,double tol)
5277cb94ee6SHong Zhang {
5287cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5297cb94ee6SHong Zhang 
5307cb94ee6SHong Zhang   PetscFunctionBegin;
5317cb94ee6SHong Zhang   cvode->linear_tol = tol;
5327cb94ee6SHong Zhang   PetscFunctionReturn(0);
5337cb94ee6SHong Zhang }
5347cb94ee6SHong Zhang EXTERN_C_END
5357cb94ee6SHong Zhang 
5367cb94ee6SHong Zhang EXTERN_C_BEGIN
5377cb94ee6SHong Zhang #undef __FUNCT__
5387cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType_Sundials"
5397087cfbeSBarry Smith PetscErrorCode  TSSundialsSetGramSchmidtType_Sundials(TS ts,TSSundialsGramSchmidtType type)
5407cb94ee6SHong Zhang {
5417cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5427cb94ee6SHong Zhang 
5437cb94ee6SHong Zhang   PetscFunctionBegin;
5447cb94ee6SHong Zhang   cvode->gtype = type;
5457cb94ee6SHong Zhang   PetscFunctionReturn(0);
5467cb94ee6SHong Zhang }
5477cb94ee6SHong Zhang EXTERN_C_END
5487cb94ee6SHong Zhang 
5497cb94ee6SHong Zhang EXTERN_C_BEGIN
5507cb94ee6SHong Zhang #undef __FUNCT__
5517cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance_Sundials"
5527087cfbeSBarry Smith PetscErrorCode  TSSundialsSetTolerance_Sundials(TS ts,double aabs,double rel)
5537cb94ee6SHong Zhang {
5547cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5557cb94ee6SHong Zhang 
5567cb94ee6SHong Zhang   PetscFunctionBegin;
5577cb94ee6SHong Zhang   if (aabs != PETSC_DECIDE) cvode->abstol = aabs;
5587cb94ee6SHong Zhang   if (rel != PETSC_DECIDE)  cvode->reltol = rel;
5597cb94ee6SHong Zhang   PetscFunctionReturn(0);
5607cb94ee6SHong Zhang }
5617cb94ee6SHong Zhang EXTERN_C_END
5627cb94ee6SHong Zhang 
5637cb94ee6SHong Zhang EXTERN_C_BEGIN
5647cb94ee6SHong Zhang #undef __FUNCT__
565f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep_Sundials"
5667087cfbeSBarry Smith PetscErrorCode  TSSundialsSetMinTimeStep_Sundials(TS ts,PetscReal mindt)
567f1cd61daSJed Brown {
568f1cd61daSJed Brown   TS_Sundials *cvode = (TS_Sundials*)ts->data;
569f1cd61daSJed Brown 
570f1cd61daSJed Brown   PetscFunctionBegin;
571f1cd61daSJed Brown   cvode->mindt = mindt;
572f1cd61daSJed Brown   PetscFunctionReturn(0);
573f1cd61daSJed Brown }
574f1cd61daSJed Brown EXTERN_C_END
575f1cd61daSJed Brown 
576f1cd61daSJed Brown EXTERN_C_BEGIN
577f1cd61daSJed Brown #undef __FUNCT__
578f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep_Sundials"
5797087cfbeSBarry Smith PetscErrorCode  TSSundialsSetMaxTimeStep_Sundials(TS ts,PetscReal maxdt)
580f1cd61daSJed Brown {
581f1cd61daSJed Brown   TS_Sundials *cvode = (TS_Sundials*)ts->data;
582f1cd61daSJed Brown 
583f1cd61daSJed Brown   PetscFunctionBegin;
584f1cd61daSJed Brown   cvode->maxdt = maxdt;
585f1cd61daSJed Brown   PetscFunctionReturn(0);
586f1cd61daSJed Brown }
587f1cd61daSJed Brown EXTERN_C_END
588f1cd61daSJed Brown 
589f1cd61daSJed Brown EXTERN_C_BEGIN
590f1cd61daSJed Brown #undef __FUNCT__
5917cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC_Sundials"
5927087cfbeSBarry Smith PetscErrorCode  TSSundialsGetPC_Sundials(TS ts,PC *pc)
5937cb94ee6SHong Zhang {
5947cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
5957cb94ee6SHong Zhang 
5967cb94ee6SHong Zhang   PetscFunctionBegin;
5977cb94ee6SHong Zhang   *pc = cvode->pc;
5987cb94ee6SHong Zhang   PetscFunctionReturn(0);
5997cb94ee6SHong Zhang }
6007cb94ee6SHong Zhang EXTERN_C_END
6017cb94ee6SHong Zhang 
6027cb94ee6SHong Zhang EXTERN_C_BEGIN
6037cb94ee6SHong Zhang #undef __FUNCT__
6047cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations_Sundials"
6057087cfbeSBarry Smith PetscErrorCode  TSSundialsGetIterations_Sundials(TS ts,int *nonlin,int *lin)
6067cb94ee6SHong Zhang {
6077cb94ee6SHong Zhang   PetscFunctionBegin;
6082c823083SHong Zhang   if (nonlin) *nonlin = ts->nonlinear_its;
6092c823083SHong Zhang   if (lin)    *lin    = ts->linear_its;
6107cb94ee6SHong Zhang   PetscFunctionReturn(0);
6117cb94ee6SHong Zhang }
6127cb94ee6SHong Zhang EXTERN_C_END
6137cb94ee6SHong Zhang 
6147cb94ee6SHong Zhang EXTERN_C_BEGIN
6157cb94ee6SHong Zhang #undef __FUNCT__
6167cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime_Sundials"
6177087cfbeSBarry Smith PetscErrorCode  TSSundialsSetExactFinalTime_Sundials(TS ts,PetscBool  s)
6187cb94ee6SHong Zhang {
6197cb94ee6SHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
6207cb94ee6SHong Zhang 
6217cb94ee6SHong Zhang   PetscFunctionBegin;
6227cb94ee6SHong Zhang   cvode->exact_final_time = s;
6237cb94ee6SHong Zhang   PetscFunctionReturn(0);
6247cb94ee6SHong Zhang }
6257cb94ee6SHong Zhang EXTERN_C_END
6262bfc04deSHong Zhang 
6272bfc04deSHong Zhang EXTERN_C_BEGIN
6282bfc04deSHong Zhang #undef __FUNCT__
6292bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps_Sundials"
6307087cfbeSBarry Smith PetscErrorCode  TSSundialsMonitorInternalSteps_Sundials(TS ts,PetscBool  s)
6312bfc04deSHong Zhang {
6322bfc04deSHong Zhang   TS_Sundials *cvode = (TS_Sundials*)ts->data;
6332bfc04deSHong Zhang 
6342bfc04deSHong Zhang   PetscFunctionBegin;
6352bfc04deSHong Zhang   cvode->monitorstep = s;
6362bfc04deSHong Zhang   PetscFunctionReturn(0);
6372bfc04deSHong Zhang }
6382bfc04deSHong Zhang EXTERN_C_END
6397cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/
6407cb94ee6SHong Zhang 
6417cb94ee6SHong Zhang #undef __FUNCT__
6427cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetIterations"
6437cb94ee6SHong Zhang /*@C
6447cb94ee6SHong Zhang    TSSundialsGetIterations - Gets the number of nonlinear and linear iterations used so far by Sundials.
6457cb94ee6SHong Zhang 
6467cb94ee6SHong Zhang    Not Collective
6477cb94ee6SHong Zhang 
6487cb94ee6SHong Zhang    Input parameters:
6497cb94ee6SHong Zhang .    ts     - the time-step context
6507cb94ee6SHong Zhang 
6517cb94ee6SHong Zhang    Output Parameters:
6527cb94ee6SHong Zhang +   nonlin - number of nonlinear iterations
6537cb94ee6SHong Zhang -   lin    - number of linear iterations
6547cb94ee6SHong Zhang 
6557cb94ee6SHong Zhang    Level: advanced
6567cb94ee6SHong Zhang 
6577cb94ee6SHong Zhang    Notes:
6587cb94ee6SHong Zhang     These return the number since the creation of the TS object
6597cb94ee6SHong Zhang 
6607cb94ee6SHong Zhang .keywords: non-linear iterations, linear iterations
6617cb94ee6SHong Zhang 
6627cb94ee6SHong Zhang .seealso: TSSundialsSetType(), TSSundialsSetGMRESRestart(),
6637cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
6647cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
665f1cd61daSJed Brown           TSSundialsSetLinearTolerance(), TSSundialsGetPC(), TSSundialsSetExactFinalTime()
6667cb94ee6SHong Zhang 
6677cb94ee6SHong Zhang @*/
6687087cfbeSBarry Smith PetscErrorCode  TSSundialsGetIterations(TS ts,int *nonlin,int *lin)
6697cb94ee6SHong Zhang {
6704ac538c5SBarry Smith   PetscErrorCode ierr;
6717cb94ee6SHong Zhang 
6727cb94ee6SHong Zhang   PetscFunctionBegin;
6734ac538c5SBarry Smith   ierr = PetscUseMethod(ts,"TSSundialsGetIterations_C",(TS,int*,int*),(ts,nonlin,lin));CHKERRQ(ierr);
6747cb94ee6SHong Zhang   PetscFunctionReturn(0);
6757cb94ee6SHong Zhang }
6767cb94ee6SHong Zhang 
6777cb94ee6SHong Zhang #undef __FUNCT__
6787cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetType"
6797cb94ee6SHong Zhang /*@
6807cb94ee6SHong Zhang    TSSundialsSetType - Sets the method that Sundials will use for integration.
6817cb94ee6SHong Zhang 
6823f9fe445SBarry Smith    Logically Collective on TS
6837cb94ee6SHong Zhang 
6847cb94ee6SHong Zhang    Input parameters:
6857cb94ee6SHong Zhang +    ts     - the time-step context
6867cb94ee6SHong Zhang -    type   - one of  SUNDIALS_ADAMS or SUNDIALS_BDF
6877cb94ee6SHong Zhang 
6887cb94ee6SHong Zhang    Level: intermediate
6897cb94ee6SHong Zhang 
6907cb94ee6SHong Zhang .keywords: Adams, backward differentiation formula
6917cb94ee6SHong Zhang 
6927cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(),  TSSundialsSetGMRESRestart(),
6937cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
6947cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
6957cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
6967cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
6977cb94ee6SHong Zhang @*/
6987087cfbeSBarry Smith PetscErrorCode  TSSundialsSetType(TS ts,TSSundialsLmmType type)
6997cb94ee6SHong Zhang {
7004ac538c5SBarry Smith   PetscErrorCode ierr;
7017cb94ee6SHong Zhang 
7027cb94ee6SHong Zhang   PetscFunctionBegin;
7034ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetType_C",(TS,TSSundialsLmmType),(ts,type));CHKERRQ(ierr);
7047cb94ee6SHong Zhang   PetscFunctionReturn(0);
7057cb94ee6SHong Zhang }
7067cb94ee6SHong Zhang 
7077cb94ee6SHong Zhang #undef __FUNCT__
7087cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGMRESRestart"
7097cb94ee6SHong Zhang /*@
7107cb94ee6SHong Zhang    TSSundialsSetGMRESRestart - Sets the dimension of the Krylov space used by
7117cb94ee6SHong Zhang        GMRES in the linear solver in SUNDIALS. SUNDIALS DOES NOT use restarted GMRES so
7127cb94ee6SHong Zhang        this is ALSO the maximum number of GMRES steps that will be used.
7137cb94ee6SHong Zhang 
7143f9fe445SBarry Smith    Logically Collective on TS
7157cb94ee6SHong Zhang 
7167cb94ee6SHong Zhang    Input parameters:
7177cb94ee6SHong Zhang +    ts      - the time-step context
7187cb94ee6SHong Zhang -    restart - number of direction vectors (the restart size).
7197cb94ee6SHong Zhang 
7207cb94ee6SHong Zhang    Level: advanced
7217cb94ee6SHong Zhang 
7227cb94ee6SHong Zhang .keywords: GMRES, restart
7237cb94ee6SHong Zhang 
7247cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(),
7257cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
7267cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7277cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
7287cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
7297cb94ee6SHong Zhang 
7307cb94ee6SHong Zhang @*/
7317087cfbeSBarry Smith PetscErrorCode  TSSundialsSetGMRESRestart(TS ts,int restart)
7327cb94ee6SHong Zhang {
7334ac538c5SBarry Smith   PetscErrorCode ierr;
7347cb94ee6SHong Zhang 
7357cb94ee6SHong Zhang   PetscFunctionBegin;
736c5eb9154SBarry Smith   PetscValidLogicalCollectiveInt(ts,restart,2);
7374ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetGMRESRestart_C",(TS,int),(ts,restart));CHKERRQ(ierr);
7387cb94ee6SHong Zhang   PetscFunctionReturn(0);
7397cb94ee6SHong Zhang }
7407cb94ee6SHong Zhang 
7417cb94ee6SHong Zhang #undef __FUNCT__
7427cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetLinearTolerance"
7437cb94ee6SHong Zhang /*@
7447cb94ee6SHong Zhang    TSSundialsSetLinearTolerance - Sets the tolerance used to solve the linear
7457cb94ee6SHong Zhang        system by SUNDIALS.
7467cb94ee6SHong Zhang 
7473f9fe445SBarry Smith    Logically Collective on TS
7487cb94ee6SHong Zhang 
7497cb94ee6SHong Zhang    Input parameters:
7507cb94ee6SHong Zhang +    ts     - the time-step context
7517cb94ee6SHong Zhang -    tol    - the factor by which the tolerance on the nonlinear solver is
7527cb94ee6SHong Zhang              multiplied to get the tolerance on the linear solver, .05 by default.
7537cb94ee6SHong Zhang 
7547cb94ee6SHong Zhang    Level: advanced
7557cb94ee6SHong Zhang 
7567cb94ee6SHong Zhang .keywords: GMRES, linear convergence tolerance, SUNDIALS
7577cb94ee6SHong Zhang 
7587cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7597cb94ee6SHong Zhang           TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
7607cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7617cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
7627cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
7637cb94ee6SHong Zhang 
7647cb94ee6SHong Zhang @*/
7657087cfbeSBarry Smith PetscErrorCode  TSSundialsSetLinearTolerance(TS ts,double tol)
7667cb94ee6SHong Zhang {
7674ac538c5SBarry Smith   PetscErrorCode ierr;
7687cb94ee6SHong Zhang 
7697cb94ee6SHong Zhang   PetscFunctionBegin;
770c5eb9154SBarry Smith   PetscValidLogicalCollectiveReal(ts,tol,2);
7714ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetLinearTolerance_C",(TS,double),(ts,tol));CHKERRQ(ierr);
7727cb94ee6SHong Zhang   PetscFunctionReturn(0);
7737cb94ee6SHong Zhang }
7747cb94ee6SHong Zhang 
7757cb94ee6SHong Zhang #undef __FUNCT__
7767cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetGramSchmidtType"
7777cb94ee6SHong Zhang /*@
7787cb94ee6SHong Zhang    TSSundialsSetGramSchmidtType - Sets type of orthogonalization used
7797cb94ee6SHong Zhang         in GMRES method by SUNDIALS linear solver.
7807cb94ee6SHong Zhang 
7813f9fe445SBarry Smith    Logically Collective on TS
7827cb94ee6SHong Zhang 
7837cb94ee6SHong Zhang    Input parameters:
7847cb94ee6SHong Zhang +    ts  - the time-step context
7857cb94ee6SHong Zhang -    type - either SUNDIALS_MODIFIED_GS or SUNDIALS_CLASSICAL_GS
7867cb94ee6SHong Zhang 
7877cb94ee6SHong Zhang    Level: advanced
7887cb94ee6SHong Zhang 
7897cb94ee6SHong Zhang .keywords: Sundials, orthogonalization
7907cb94ee6SHong Zhang 
7917cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7927cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(),  TSSundialsSetTolerance(),
7937cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
7947cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
7957cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
7967cb94ee6SHong Zhang 
7977cb94ee6SHong Zhang @*/
7987087cfbeSBarry Smith PetscErrorCode  TSSundialsSetGramSchmidtType(TS ts,TSSundialsGramSchmidtType type)
7997cb94ee6SHong Zhang {
8004ac538c5SBarry Smith   PetscErrorCode ierr;
8017cb94ee6SHong Zhang 
8027cb94ee6SHong Zhang   PetscFunctionBegin;
8034ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetGramSchmidtType_C",(TS,TSSundialsGramSchmidtType),(ts,type));CHKERRQ(ierr);
8047cb94ee6SHong Zhang   PetscFunctionReturn(0);
8057cb94ee6SHong Zhang }
8067cb94ee6SHong Zhang 
8077cb94ee6SHong Zhang #undef __FUNCT__
8087cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetTolerance"
8097cb94ee6SHong Zhang /*@
8107cb94ee6SHong Zhang    TSSundialsSetTolerance - Sets the absolute and relative tolerance used by
8117cb94ee6SHong Zhang                          Sundials for error control.
8127cb94ee6SHong Zhang 
8133f9fe445SBarry Smith    Logically Collective on TS
8147cb94ee6SHong Zhang 
8157cb94ee6SHong Zhang    Input parameters:
8167cb94ee6SHong Zhang +    ts  - the time-step context
8177cb94ee6SHong Zhang .    aabs - the absolute tolerance
8187cb94ee6SHong Zhang -    rel - the relative tolerance
8197cb94ee6SHong Zhang 
8207cb94ee6SHong Zhang      See the Cvode/Sundials users manual for exact details on these parameters. Essentially
8217cb94ee6SHong Zhang     these regulate the size of the error for a SINGLE timestep.
8227cb94ee6SHong Zhang 
8237cb94ee6SHong Zhang    Level: intermediate
8247cb94ee6SHong Zhang 
8257cb94ee6SHong Zhang .keywords: Sundials, tolerance
8267cb94ee6SHong Zhang 
8277cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8287cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(),
8297cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8307cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC(),
8317cb94ee6SHong Zhang           TSSundialsSetExactFinalTime()
8327cb94ee6SHong Zhang 
8337cb94ee6SHong Zhang @*/
8347087cfbeSBarry Smith PetscErrorCode  TSSundialsSetTolerance(TS ts,double aabs,double rel)
8357cb94ee6SHong Zhang {
8364ac538c5SBarry Smith   PetscErrorCode ierr;
8377cb94ee6SHong Zhang 
8387cb94ee6SHong Zhang   PetscFunctionBegin;
8394ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetTolerance_C",(TS,double,double),(ts,aabs,rel));CHKERRQ(ierr);
8407cb94ee6SHong Zhang   PetscFunctionReturn(0);
8417cb94ee6SHong Zhang }
8427cb94ee6SHong Zhang 
8437cb94ee6SHong Zhang #undef __FUNCT__
8447cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsGetPC"
8457cb94ee6SHong Zhang /*@
8467cb94ee6SHong Zhang    TSSundialsGetPC - Extract the PC context from a time-step context for Sundials.
8477cb94ee6SHong Zhang 
8487cb94ee6SHong Zhang    Input Parameter:
8497cb94ee6SHong Zhang .    ts - the time-step context
8507cb94ee6SHong Zhang 
8517cb94ee6SHong Zhang    Output Parameter:
8527cb94ee6SHong Zhang .    pc - the preconditioner context
8537cb94ee6SHong Zhang 
8547cb94ee6SHong Zhang    Level: advanced
8557cb94ee6SHong Zhang 
8567cb94ee6SHong Zhang .seealso: TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8577cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
8587cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8597cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance()
8607cb94ee6SHong Zhang @*/
8617087cfbeSBarry Smith PetscErrorCode  TSSundialsGetPC(TS ts,PC *pc)
8627cb94ee6SHong Zhang {
8634ac538c5SBarry Smith   PetscErrorCode ierr;
8647cb94ee6SHong Zhang 
8657cb94ee6SHong Zhang   PetscFunctionBegin;
8664ac538c5SBarry Smith   ierr = PetscUseMethod(ts,"TSSundialsGetPC_C",(TS,PC *),(ts,pc));CHKERRQ(ierr);
8677cb94ee6SHong Zhang   PetscFunctionReturn(0);
8687cb94ee6SHong Zhang }
8697cb94ee6SHong Zhang 
8707cb94ee6SHong Zhang #undef __FUNCT__
8717cb94ee6SHong Zhang #define __FUNCT__ "TSSundialsSetExactFinalTime"
8727cb94ee6SHong Zhang /*@
8737cb94ee6SHong Zhang    TSSundialsSetExactFinalTime - Determines if Sundials interpolates solution to the
8747cb94ee6SHong Zhang       exact final time requested by the user or just returns it at the final time
8757cb94ee6SHong Zhang       it computed. (Defaults to true).
8767cb94ee6SHong Zhang 
8777cb94ee6SHong Zhang    Input Parameter:
8787cb94ee6SHong Zhang +   ts - the time-step context
8797cb94ee6SHong Zhang -   ft - PETSC_TRUE if interpolates, else PETSC_FALSE
8807cb94ee6SHong Zhang 
8817cb94ee6SHong Zhang    Level: beginner
8827cb94ee6SHong Zhang 
8837cb94ee6SHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8847cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
8857cb94ee6SHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
8867cb94ee6SHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC()
8877cb94ee6SHong Zhang @*/
8887087cfbeSBarry Smith PetscErrorCode  TSSundialsSetExactFinalTime(TS ts,PetscBool  ft)
8897cb94ee6SHong Zhang {
8904ac538c5SBarry Smith   PetscErrorCode ierr;
8917cb94ee6SHong Zhang 
8927cb94ee6SHong Zhang   PetscFunctionBegin;
8934ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetExactFinalTime_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr);
8947cb94ee6SHong Zhang   PetscFunctionReturn(0);
8957cb94ee6SHong Zhang }
8967cb94ee6SHong Zhang 
8972bfc04deSHong Zhang #undef __FUNCT__
898f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMinTimeStep"
899f1cd61daSJed Brown /*@
900f1cd61daSJed Brown    TSSundialsSetMinTimeStep - Smallest time step to be chosen by the adaptive controller.
901f1cd61daSJed Brown 
902f1cd61daSJed Brown    Input Parameter:
903f1cd61daSJed Brown +   ts - the time-step context
904f1cd61daSJed Brown -   mindt - lowest time step if positive, negative to deactivate
905f1cd61daSJed Brown 
906fc6b9e64SJed Brown    Note:
907fc6b9e64SJed Brown    Sundials will error if it is not possible to keep the estimated truncation error below
908fc6b9e64SJed Brown    the tolerance set with TSSundialsSetTolerance() without going below this step size.
909fc6b9e64SJed Brown 
910f1cd61daSJed Brown    Level: beginner
911f1cd61daSJed Brown 
912f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(),
913f1cd61daSJed Brown @*/
9147087cfbeSBarry Smith PetscErrorCode  TSSundialsSetMinTimeStep(TS ts,PetscReal mindt)
915f1cd61daSJed Brown {
9164ac538c5SBarry Smith   PetscErrorCode ierr;
917f1cd61daSJed Brown 
918f1cd61daSJed Brown   PetscFunctionBegin;
9194ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetMinTimeStep_C",(TS,PetscReal),(ts,mindt));CHKERRQ(ierr);
920f1cd61daSJed Brown   PetscFunctionReturn(0);
921f1cd61daSJed Brown }
922f1cd61daSJed Brown 
923f1cd61daSJed Brown #undef __FUNCT__
924f1cd61daSJed Brown #define __FUNCT__ "TSSundialsSetMaxTimeStep"
925f1cd61daSJed Brown /*@
926f1cd61daSJed Brown    TSSundialsSetMaxTimeStep - Largest time step to be chosen by the adaptive controller.
927f1cd61daSJed Brown 
928f1cd61daSJed Brown    Input Parameter:
929f1cd61daSJed Brown +   ts - the time-step context
930f1cd61daSJed Brown -   maxdt - lowest time step if positive, negative to deactivate
931f1cd61daSJed Brown 
932f1cd61daSJed Brown    Level: beginner
933f1cd61daSJed Brown 
934f1cd61daSJed Brown .seealso: TSSundialsSetType(), TSSundialsSetTolerance(),
935f1cd61daSJed Brown @*/
9367087cfbeSBarry Smith PetscErrorCode  TSSundialsSetMaxTimeStep(TS ts,PetscReal maxdt)
937f1cd61daSJed Brown {
9384ac538c5SBarry Smith   PetscErrorCode ierr;
939f1cd61daSJed Brown 
940f1cd61daSJed Brown   PetscFunctionBegin;
9414ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsSetMaxTimeStep_C",(TS,PetscReal),(ts,maxdt));CHKERRQ(ierr);
942f1cd61daSJed Brown   PetscFunctionReturn(0);
943f1cd61daSJed Brown }
944f1cd61daSJed Brown 
945f1cd61daSJed Brown #undef __FUNCT__
9462bfc04deSHong Zhang #define __FUNCT__ "TSSundialsMonitorInternalSteps"
9472bfc04deSHong Zhang /*@
9482bfc04deSHong Zhang    TSSundialsMonitorInternalSteps - Monitor Sundials internal steps (Defaults to false).
9492bfc04deSHong Zhang 
9502bfc04deSHong Zhang    Input Parameter:
9512bfc04deSHong Zhang +   ts - the time-step context
9522bfc04deSHong Zhang -   ft - PETSC_TRUE if monitor, else PETSC_FALSE
9532bfc04deSHong Zhang 
9542bfc04deSHong Zhang    Level: beginner
9552bfc04deSHong Zhang 
9562bfc04deSHong Zhang .seealso:TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
9572bfc04deSHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(),
9582bfc04deSHong Zhang           TSSundialsGetIterations(), TSSundialsSetType(), TSSundialsSetGMRESRestart(),
9592bfc04deSHong Zhang           TSSundialsSetLinearTolerance(), TSSundialsSetTolerance(), TSSundialsGetPC()
9602bfc04deSHong Zhang @*/
9617087cfbeSBarry Smith PetscErrorCode  TSSundialsMonitorInternalSteps(TS ts,PetscBool  ft)
9622bfc04deSHong Zhang {
9634ac538c5SBarry Smith   PetscErrorCode ierr;
9642bfc04deSHong Zhang 
9652bfc04deSHong Zhang   PetscFunctionBegin;
9664ac538c5SBarry Smith   ierr = PetscTryMethod(ts,"TSSundialsMonitorInternalSteps_C",(TS,PetscBool),(ts,ft));CHKERRQ(ierr);
9672bfc04deSHong Zhang   PetscFunctionReturn(0);
9682bfc04deSHong Zhang }
9697cb94ee6SHong Zhang /* -------------------------------------------------------------------------------------------*/
9707cb94ee6SHong Zhang /*MC
97196f5712cSJed Brown       TSSUNDIALS - ODE solver using the LLNL CVODE/SUNDIALS package (now called SUNDIALS)
9727cb94ee6SHong Zhang 
9737cb94ee6SHong Zhang    Options Database:
9747cb94ee6SHong Zhang +    -ts_sundials_type <bdf,adams>
9757cb94ee6SHong Zhang .    -ts_sundials_gramschmidt_type <modified, classical> - type of orthogonalization inside GMRES
9767cb94ee6SHong Zhang .    -ts_sundials_atol <tol> - Absolute tolerance for convergence
9777cb94ee6SHong Zhang .    -ts_sundials_rtol <tol> - Relative tolerance for convergence
9787cb94ee6SHong Zhang .    -ts_sundials_linear_tolerance <tol>
9797cb94ee6SHong Zhang .    -ts_sundials_gmres_restart <restart> - Number of GMRES orthogonalization directions
98016016685SHong Zhang .    -ts_sundials_exact_final_time - Interpolate output to stop exactly at the final time
98116016685SHong Zhang -    -ts_sundials_monitor_steps - Monitor SUNDIALS internel steps
98216016685SHong Zhang 
9837cb94ee6SHong Zhang 
9847cb94ee6SHong Zhang     Notes: This uses its own nonlinear solver and Krylov method so PETSc SNES and KSP options do not apply
9857cb94ee6SHong Zhang            only PETSc PC options
9867cb94ee6SHong Zhang 
9877cb94ee6SHong Zhang     Level: beginner
9887cb94ee6SHong Zhang 
9897cb94ee6SHong Zhang .seealso:  TSCreate(), TS, TSSetType(), TSSundialsSetType(), TSSundialsSetGMRESRestart(), TSSundialsSetLinearTolerance(),
9907cb94ee6SHong Zhang            TSSundialsSetGramSchmidtType(), TSSundialsSetTolerance(), TSSundialsGetPC(), TSSundialsGetIterations(), TSSundialsSetExactFinalTime()
9917cb94ee6SHong Zhang 
9927cb94ee6SHong Zhang M*/
9937cb94ee6SHong Zhang EXTERN_C_BEGIN
9947cb94ee6SHong Zhang #undef __FUNCT__
9957cb94ee6SHong Zhang #define __FUNCT__ "TSCreate_Sundials"
9967087cfbeSBarry Smith PetscErrorCode  TSCreate_Sundials(TS ts)
9977cb94ee6SHong Zhang {
9987cb94ee6SHong Zhang   TS_Sundials *cvode;
9997cb94ee6SHong Zhang   PetscErrorCode ierr;
10007cb94ee6SHong Zhang 
10017cb94ee6SHong Zhang   PetscFunctionBegin;
1002277b19d0SLisandro Dalcin   ts->ops->reset          = TSReset_Sundials;
100328adb3f7SHong Zhang   ts->ops->destroy        = TSDestroy_Sundials;
100428adb3f7SHong Zhang   ts->ops->view           = TSView_Sundials;
1005*214bc6a2SJed Brown   ts->ops->setup          = TSSetUp_Sundials;
1006*214bc6a2SJed Brown   ts->ops->step           = TSStep_Sundials;
1007*214bc6a2SJed Brown   ts->ops->setfromoptions = TSSetFromOptions_Sundials;
10087cb94ee6SHong Zhang 
100938f2d2fdSLisandro Dalcin   ierr = PetscNewLog(ts,TS_Sundials,&cvode);CHKERRQ(ierr);
10107adad957SLisandro Dalcin   ierr = PCCreate(((PetscObject)ts)->comm,&cvode->pc);CHKERRQ(ierr);
10117cb94ee6SHong Zhang   ierr = PetscLogObjectParent(ts,cvode->pc);CHKERRQ(ierr);
10127cb94ee6SHong Zhang   ts->data          = (void*)cvode;
10136fadb2cdSHong Zhang   cvode->cvode_type = SUNDIALS_BDF;
10146fadb2cdSHong Zhang   cvode->gtype      = SUNDIALS_CLASSICAL_GS;
10157cb94ee6SHong Zhang   cvode->restart    = 5;
10167cb94ee6SHong Zhang   cvode->linear_tol = .05;
10177cb94ee6SHong Zhang 
10182bfc04deSHong Zhang   cvode->exact_final_time = PETSC_TRUE;
10192bfc04deSHong Zhang   cvode->monitorstep      = PETSC_FALSE;
10207cb94ee6SHong Zhang 
1021a07356b8SSatish Balay   ierr = MPI_Comm_dup(((PetscObject)ts)->comm,&(cvode->comm_sundials));CHKERRQ(ierr);
1022f1cd61daSJed Brown 
1023f1cd61daSJed Brown   cvode->mindt = -1.;
1024f1cd61daSJed Brown   cvode->maxdt = -1.;
1025f1cd61daSJed Brown 
10267cb94ee6SHong Zhang   /* set tolerance for Sundials */
10277cb94ee6SHong Zhang   cvode->reltol = 1e-6;
10282c823083SHong Zhang   cvode->abstol = 1e-6;
10297cb94ee6SHong Zhang 
10307cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetType_C","TSSundialsSetType_Sundials",
10317cb94ee6SHong Zhang                     TSSundialsSetType_Sundials);CHKERRQ(ierr);
10327cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGMRESRestart_C",
10337cb94ee6SHong Zhang                     "TSSundialsSetGMRESRestart_Sundials",
10347cb94ee6SHong Zhang                     TSSundialsSetGMRESRestart_Sundials);CHKERRQ(ierr);
10357cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetLinearTolerance_C",
10367cb94ee6SHong Zhang                     "TSSundialsSetLinearTolerance_Sundials",
10377cb94ee6SHong Zhang                      TSSundialsSetLinearTolerance_Sundials);CHKERRQ(ierr);
10387cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetGramSchmidtType_C",
10397cb94ee6SHong Zhang                     "TSSundialsSetGramSchmidtType_Sundials",
10407cb94ee6SHong Zhang                      TSSundialsSetGramSchmidtType_Sundials);CHKERRQ(ierr);
10417cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetTolerance_C",
10427cb94ee6SHong Zhang                     "TSSundialsSetTolerance_Sundials",
10437cb94ee6SHong Zhang                      TSSundialsSetTolerance_Sundials);CHKERRQ(ierr);
1044f1cd61daSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMinTimeStep_C",
1045f1cd61daSJed Brown                     "TSSundialsSetMinTimeStep_Sundials",
1046f1cd61daSJed Brown                      TSSundialsSetMinTimeStep_Sundials);CHKERRQ(ierr);
1047f1cd61daSJed Brown   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetMaxTimeStep_C",
1048f1cd61daSJed Brown                     "TSSundialsSetMaxTimeStep_Sundials",
1049f1cd61daSJed Brown                      TSSundialsSetMaxTimeStep_Sundials);CHKERRQ(ierr);
10507cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetPC_C",
10517cb94ee6SHong Zhang                     "TSSundialsGetPC_Sundials",
10527cb94ee6SHong Zhang                      TSSundialsGetPC_Sundials);CHKERRQ(ierr);
10537cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsGetIterations_C",
10547cb94ee6SHong Zhang                     "TSSundialsGetIterations_Sundials",
10557cb94ee6SHong Zhang                      TSSundialsGetIterations_Sundials);CHKERRQ(ierr);
10567cb94ee6SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsSetExactFinalTime_C",
10577cb94ee6SHong Zhang                     "TSSundialsSetExactFinalTime_Sundials",
10587cb94ee6SHong Zhang                      TSSundialsSetExactFinalTime_Sundials);CHKERRQ(ierr);
10592bfc04deSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)ts,"TSSundialsMonitorInternalSteps_C",
10602bfc04deSHong Zhang                     "TSSundialsMonitorInternalSteps_Sundials",
10612bfc04deSHong Zhang                      TSSundialsMonitorInternalSteps_Sundials);CHKERRQ(ierr);
10622bfc04deSHong Zhang 
10637cb94ee6SHong Zhang   PetscFunctionReturn(0);
10647cb94ee6SHong Zhang }
10657cb94ee6SHong Zhang EXTERN_C_END
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