1 static char help[] = "Hybrid Finite Element-Finite Volume Example.\n"; 2 /*F 3 Here we are advecting a passive tracer in a harmonic velocity field, defined by 4 a forcing function $f$: 5 \begin{align} 6 -\Delta \mathbf{u} + f &= 0 \\ 7 \frac{\partial\phi}{\partial t} + \nabla\cdot \phi \mathbf{u} &= 0 8 \end{align} 9 F*/ 10 11 #include <petscdmplex.h> 12 #include <petscds.h> 13 #include <petscts.h> 14 15 #include <petsc/private/dmpleximpl.h> /* For DotD */ 16 17 typedef enum { 18 VEL_ZERO, 19 VEL_CONSTANT, 20 VEL_HARMONIC, 21 VEL_SHEAR 22 } VelocityDistribution; 23 24 typedef enum { 25 ZERO, 26 CONSTANT, 27 GAUSSIAN, 28 TILTED, 29 DELTA 30 } PorosityDistribution; 31 32 static PetscErrorCode constant_u_2d(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 33 34 /* 35 FunctionalFunc - Calculates the value of a functional of the solution at a point 36 37 Input Parameters: 38 + dm - The DM 39 . time - The TS time 40 . x - The coordinates of the evaluation point 41 . u - The field values at point x 42 - ctx - A user context, or NULL 43 44 Output Parameter: 45 . f - The value of the functional at point x 46 47 */ 48 typedef PetscErrorCode (*FunctionalFunc)(DM, PetscReal, const PetscReal *, const PetscScalar *, PetscReal *, void *); 49 50 typedef struct _n_Functional *Functional; 51 struct _n_Functional { 52 char *name; 53 FunctionalFunc func; 54 void *ctx; 55 PetscInt offset; 56 Functional next; 57 }; 58 59 typedef struct { 60 /* Problem definition */ 61 PetscBool useFV; /* Use a finite volume scheme for advection */ 62 PetscErrorCode (*initialGuess[2])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx); 63 VelocityDistribution velocityDist; 64 PorosityDistribution porosityDist; 65 PetscReal inflowState; 66 PetscReal source[3]; 67 /* Monitoring */ 68 PetscInt numMonitorFuncs, maxMonitorFunc; 69 Functional *monitorFuncs; 70 PetscInt errorFunctional; 71 Functional functionalRegistry; 72 } AppCtx; 73 74 static AppCtx *globalUser; 75 76 static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) 77 { 78 const char *velocityDist[4] = {"zero", "constant", "harmonic", "shear"}; 79 const char *porosityDist[5] = {"zero", "constant", "gaussian", "tilted", "delta"}; 80 PetscInt vd, pd, d; 81 PetscBool flg; 82 83 PetscFunctionBeginUser; 84 options->useFV = PETSC_FALSE; 85 options->velocityDist = VEL_HARMONIC; 86 options->porosityDist = ZERO; 87 options->inflowState = -2.0; 88 options->numMonitorFuncs = 0; 89 options->source[0] = 0.5; 90 options->source[1] = 0.5; 91 options->source[2] = 0.5; 92 93 PetscOptionsBegin(comm, "", "Magma Dynamics Options", "DMPLEX"); 94 PetscCall(PetscOptionsBool("-use_fv", "Use the finite volume method for advection", "ex18.c", options->useFV, &options->useFV, NULL)); 95 vd = options->velocityDist; 96 PetscCall(PetscOptionsEList("-velocity_dist", "Velocity distribution type", "ex18.c", velocityDist, 4, velocityDist[options->velocityDist], &vd, NULL)); 97 options->velocityDist = (VelocityDistribution)vd; 98 pd = options->porosityDist; 99 PetscCall(PetscOptionsEList("-porosity_dist", "Initial porosity distribution type", "ex18.c", porosityDist, 5, porosityDist[options->porosityDist], &pd, NULL)); 100 options->porosityDist = (PorosityDistribution)pd; 101 PetscCall(PetscOptionsReal("-inflow_state", "The inflow state", "ex18.c", options->inflowState, &options->inflowState, NULL)); 102 d = 2; 103 PetscCall(PetscOptionsRealArray("-source_loc", "The source location", "ex18.c", options->source, &d, &flg)); 104 PetscCheck(!flg || d == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Must give dim coordinates for the source location, not %" PetscInt_FMT, d); 105 PetscOptionsEnd(); 106 107 PetscFunctionReturn(PETSC_SUCCESS); 108 } 109 110 static PetscErrorCode ProcessMonitorOptions(MPI_Comm comm, AppCtx *options) 111 { 112 Functional func; 113 char *names[256]; 114 PetscInt f; 115 116 PetscFunctionBeginUser; 117 PetscOptionsBegin(comm, "", "Simulation Monitor Options", "DMPLEX"); 118 options->numMonitorFuncs = PETSC_STATIC_ARRAY_LENGTH(names); 119 PetscCall(PetscOptionsStringArray("-monitor", "List of functionals to monitor", "", names, &options->numMonitorFuncs, NULL)); 120 PetscCall(PetscMalloc1(options->numMonitorFuncs, &options->monitorFuncs)); 121 for (f = 0; f < options->numMonitorFuncs; ++f) { 122 for (func = options->functionalRegistry; func; func = func->next) { 123 PetscBool match; 124 125 PetscCall(PetscStrcasecmp(names[f], func->name, &match)); 126 if (match) break; 127 } 128 PetscCheck(func, comm, PETSC_ERR_USER, "No known functional '%s'", names[f]); 129 options->monitorFuncs[f] = func; 130 /* Jed inserts a de-duplication of functionals here */ 131 PetscCall(PetscFree(names[f])); 132 } 133 /* Find out the maximum index of any functional computed by a function we will be calling (even if we are not using it) */ 134 options->maxMonitorFunc = -1; 135 for (func = options->functionalRegistry; func; func = func->next) { 136 for (f = 0; f < options->numMonitorFuncs; ++f) { 137 Functional call = options->monitorFuncs[f]; 138 139 if (func->func == call->func && func->ctx == call->ctx) options->maxMonitorFunc = PetscMax(options->maxMonitorFunc, func->offset); 140 } 141 } 142 PetscOptionsEnd(); 143 PetscFunctionReturn(PETSC_SUCCESS); 144 } 145 146 static PetscErrorCode FunctionalRegister(Functional *functionalRegistry, const char name[], PetscInt *offset, FunctionalFunc func, void *ctx) 147 { 148 Functional *ptr, f; 149 PetscInt lastoffset = -1; 150 151 PetscFunctionBeginUser; 152 for (ptr = functionalRegistry; *ptr; ptr = &(*ptr)->next) lastoffset = (*ptr)->offset; 153 PetscCall(PetscNew(&f)); 154 PetscCall(PetscStrallocpy(name, &f->name)); 155 f->offset = lastoffset + 1; 156 f->func = func; 157 f->ctx = ctx; 158 f->next = NULL; 159 *ptr = f; 160 *offset = f->offset; 161 PetscFunctionReturn(PETSC_SUCCESS); 162 } 163 164 static PetscErrorCode FunctionalDestroy(Functional *link) 165 { 166 Functional next, l; 167 168 PetscFunctionBeginUser; 169 if (!link) PetscFunctionReturn(PETSC_SUCCESS); 170 l = *link; 171 *link = NULL; 172 for (; l; l = next) { 173 next = l->next; 174 PetscCall(PetscFree(l->name)); 175 PetscCall(PetscFree(l)); 176 } 177 PetscFunctionReturn(PETSC_SUCCESS); 178 } 179 180 static void f0_zero_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 181 { 182 PetscInt comp; 183 for (comp = 0; comp < dim; ++comp) f0[comp] = u[comp]; 184 } 185 186 static void f0_constant_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 187 { 188 PetscScalar wind[3] = {0.0, 0.0, 0.0}; 189 PetscInt comp; 190 191 PetscCallAbort(PETSC_COMM_SELF, constant_u_2d(dim, t, x, Nf, wind, NULL)); 192 for (comp = 0; comp < dim && comp < 3; ++comp) f0[comp] = u[comp] - wind[comp]; 193 } 194 195 static void f1_constant_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 196 { 197 PetscInt comp; 198 for (comp = 0; comp < dim * dim; ++comp) f1[comp] = 0.0; 199 } 200 201 static void g0_constant_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 202 { 203 PetscInt d; 204 for (d = 0; d < dim; ++d) g0[d * dim + d] = 1.0; 205 } 206 207 static void g0_constant_pp(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 208 { 209 g0[0] = 1.0; 210 } 211 212 static void f0_lap_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 213 { 214 PetscInt comp; 215 for (comp = 0; comp < dim; ++comp) f0[comp] = 4.0; 216 } 217 218 static void f1_lap_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 219 { 220 PetscInt comp, d; 221 for (comp = 0; comp < dim; ++comp) { 222 for (d = 0; d < dim; ++d) f1[comp * dim + d] = u_x[comp * dim + d]; 223 } 224 } 225 226 static void f0_lap_periodic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 227 { 228 f0[0] = -PetscSinReal(2.0 * PETSC_PI * x[0]); 229 f0[1] = 2.0 * PETSC_PI * x[1] * PetscCosReal(2.0 * PETSC_PI * x[0]); 230 } 231 232 static void f0_lap_doubly_periodic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 233 { 234 f0[0] = -2.0 * PetscSinReal(2.0 * PETSC_PI * x[0]) * PetscCosReal(2.0 * PETSC_PI * x[1]); 235 f0[1] = 2.0 * PetscSinReal(2.0 * PETSC_PI * x[1]) * PetscCosReal(2.0 * PETSC_PI * x[0]); 236 } 237 238 void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 239 { 240 const PetscInt Ncomp = dim; 241 PetscInt compI, d; 242 243 for (compI = 0; compI < Ncomp; ++compI) { 244 for (d = 0; d < dim; ++d) g3[((compI * Ncomp + compI) * dim + d) * dim + d] = 1.0; 245 } 246 } 247 248 /* \frac{\partial\phi}{\partial t} + \nabla\phi \cdot \mathbf{u} + \phi \nabla \cdot \mathbf{u} = 0 */ 249 static void f0_advection(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 250 { 251 PetscInt d; 252 f0[0] = u_t[dim]; 253 for (d = 0; d < dim; ++d) f0[0] += u[dim] * u_x[d * dim + d] + u_x[dim * dim + d] * u[d]; 254 } 255 256 static void f1_advection(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 257 { 258 PetscInt d; 259 for (d = 0; d < dim; ++d) f1[0] = 0.0; 260 } 261 262 void g0_adv_pp(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 263 { 264 PetscInt d; 265 g0[0] = u_tShift; 266 for (d = 0; d < dim; ++d) g0[0] += u_x[d * dim + d]; 267 } 268 269 void g1_adv_pp(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g1[]) 270 { 271 PetscInt d; 272 for (d = 0; d < dim; ++d) g1[d] = u[d]; 273 } 274 275 void g0_adv_pu(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 276 { 277 PetscInt d; 278 for (d = 0; d < dim; ++d) g0[0] += u_x[dim * dim + d]; 279 } 280 281 void g1_adv_pu(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g1[]) 282 { 283 PetscInt d; 284 for (d = 0; d < dim; ++d) g1[d * dim + d] = u[dim]; 285 } 286 287 static void riemann_advection(PetscInt dim, PetscInt Nf, const PetscReal *qp, const PetscReal *n, const PetscScalar *uL, const PetscScalar *uR, PetscInt numConstants, const PetscScalar constants[], PetscScalar *flux, void *ctx) 288 { 289 PetscReal wind[3] = {0.0, 1.0, 0.0}; 290 PetscReal wn = DMPlex_DotRealD_Internal(PetscMin(dim, 3), wind, n); 291 292 flux[0] = (wn > 0 ? uL[dim] : uR[dim]) * wn; 293 } 294 295 static void riemann_coupled_advection(PetscInt dim, PetscInt Nf, const PetscReal *qp, const PetscReal *n, const PetscScalar *uL, const PetscScalar *uR, PetscInt numConstants, const PetscScalar constants[], PetscScalar *flux, void *ctx) 296 { 297 PetscReal wn = DMPlex_DotD_Internal(dim, uL, n); 298 299 #if 1 300 flux[0] = (wn > 0 ? uL[dim] : uR[dim]) * wn; 301 #else 302 /* if (fabs(uL[0] - wind[0]) > 1.0e-7 || fabs(uL[1] - wind[1]) > 1.0e-7) PetscPrintf(PETSC_COMM_SELF, "wind (%g, %g) uL (%g, %g) uR (%g, %g)\n", wind[0], wind[1], uL[0], uL[1], uR[0], uR[1]); */ 303 /* Smear it out */ 304 flux[0] = 0.5 * ((uL[dim] + uR[dim]) + (uL[dim] - uR[dim]) * tanh(1.0e5 * wn)) * wn; 305 #endif 306 } 307 308 static PetscErrorCode zero_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 309 { 310 u[0] = 0.0; 311 u[1] = 0.0; 312 return PETSC_SUCCESS; 313 } 314 315 static PetscErrorCode constant_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 316 { 317 u[0] = 0.0; 318 u[1] = 1.0; 319 return PETSC_SUCCESS; 320 } 321 322 /* Coordinates of the point which was at x at t = 0 */ 323 static PetscErrorCode constant_x_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 324 { 325 const PetscReal t = *((PetscReal *)ctx); 326 u[0] = x[0]; 327 u[1] = x[1] + t; 328 #if 0 329 PetscCall(DMLocalizeCoordinate(globalUser->dm, u, PETSC_FALSE, u)); 330 #else 331 u[1] = u[1] - (int)PetscRealPart(u[1]); 332 #endif 333 return PETSC_SUCCESS; 334 } 335 336 /* 337 In 2D we use the exact solution: 338 339 u = x^2 + y^2 340 v = 2 x^2 - 2xy 341 phi = h(x + y + (u + v) t) 342 f_x = f_y = 4 343 344 so that 345 346 -\Delta u + f = <-4, -4> + <4, 4> = 0 347 {\partial\phi}{\partial t} - \nabla\cdot \phi u = 0 348 h_t(x + y + (u + v) t) - u . grad phi - phi div u 349 = u h' + v h' - u h_x - v h_y 350 = 0 351 352 We will conserve phi since 353 354 \nabla \cdot u = 2x - 2x = 0 355 356 Also try h((x + ut)^2 + (y + vt)^2), so that 357 358 h_t((x + ut)^2 + (y + vt)^2) - u . grad phi - phi div u 359 = 2 h' (u (x + ut) + v (y + vt)) - u h_x - v h_y 360 = 2 h' (u (x + ut) + v (y + vt)) - u h' 2 (x + u t) - v h' 2 (y + vt) 361 = 2 h' (u (x + ut) + v (y + vt) - u (x + u t) - v (y + vt)) 362 = 0 363 364 */ 365 static PetscErrorCode quadratic_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 366 { 367 u[0] = x[0] * x[0] + x[1] * x[1]; 368 u[1] = 2.0 * x[0] * x[0] - 2.0 * x[0] * x[1]; 369 return PETSC_SUCCESS; 370 } 371 372 /* 373 In 2D we use the exact, periodic solution: 374 375 u = sin(2 pi x)/4 pi^2 376 v = -y cos(2 pi x)/2 pi 377 phi = h(x + y + (u + v) t) 378 f_x = -sin(2 pi x) 379 f_y = 2 pi y cos(2 pi x) 380 381 so that 382 383 -\Delta u + f = <sin(2pi x), -2pi y cos(2pi x)> + <-sin(2pi x), 2pi y cos(2pi x)> = 0 384 385 We will conserve phi since 386 387 \nabla \cdot u = cos(2pi x)/2pi - cos(2pi x)/2pi = 0 388 */ 389 static PetscErrorCode periodic_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 390 { 391 u[0] = PetscSinReal(2.0 * PETSC_PI * x[0]) / PetscSqr(2.0 * PETSC_PI); 392 u[1] = -x[1] * PetscCosReal(2.0 * PETSC_PI * x[0]) / (2.0 * PETSC_PI); 393 return PETSC_SUCCESS; 394 } 395 396 /* 397 In 2D we use the exact, doubly periodic solution: 398 399 u = sin(2 pi x) cos(2 pi y)/4 pi^2 400 v = -sin(2 pi y) cos(2 pi x)/4 pi^2 401 phi = h(x + y + (u + v) t) 402 f_x = -2sin(2 pi x) cos(2 pi y) 403 f_y = 2sin(2 pi y) cos(2 pi x) 404 405 so that 406 407 -\Delta u + f = <2 sin(2pi x) cos(2pi y), -2 sin(2pi y) cos(2pi x)> + <-2 sin(2pi x) cos(2pi y), 2 sin(2pi y) cos(2pi x)> = 0 408 409 We will conserve phi since 410 411 \nabla \cdot u = cos(2pi x) cos(2pi y)/2pi - cos(2pi y) cos(2pi x)/2pi = 0 412 */ 413 static PetscErrorCode doubly_periodic_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 414 { 415 u[0] = PetscSinReal(2.0 * PETSC_PI * x[0]) * PetscCosReal(2.0 * PETSC_PI * x[1]) / PetscSqr(2.0 * PETSC_PI); 416 u[1] = -PetscSinReal(2.0 * PETSC_PI * x[1]) * PetscCosReal(2.0 * PETSC_PI * x[0]) / PetscSqr(2.0 * PETSC_PI); 417 return PETSC_SUCCESS; 418 } 419 420 static PetscErrorCode shear_bc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 421 { 422 u[0] = x[1] - 0.5; 423 u[1] = 0.0; 424 return PETSC_SUCCESS; 425 } 426 427 static PetscErrorCode initialVelocity(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 428 { 429 PetscInt d; 430 for (d = 0; d < dim; ++d) u[d] = 0.0; 431 return PETSC_SUCCESS; 432 } 433 434 static PetscErrorCode zero_phi(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 435 { 436 u[0] = 0.0; 437 return PETSC_SUCCESS; 438 } 439 440 static PetscErrorCode constant_phi(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 441 { 442 u[0] = 1.0; 443 return PETSC_SUCCESS; 444 } 445 446 static PetscErrorCode delta_phi_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 447 { 448 PetscReal x0[2]; 449 PetscScalar xn[2]; 450 451 x0[0] = globalUser->source[0]; 452 x0[1] = globalUser->source[1]; 453 PetscCall(constant_x_2d(dim, time, x0, Nf, xn, ctx)); 454 { 455 const PetscReal xi = x[0] - PetscRealPart(xn[0]); 456 const PetscReal eta = x[1] - PetscRealPart(xn[1]); 457 const PetscReal r2 = xi * xi + eta * eta; 458 459 u[0] = r2 < 1.0e-7 ? 1.0 : 0.0; 460 } 461 return PETSC_SUCCESS; 462 } 463 464 /* 465 Gaussian blob, initially centered on (0.5, 0.5) 466 467 xi = x(t) - x0, eta = y(t) - y0 468 469 where x(t), y(t) are the integral curves of v(t), 470 471 dx/dt . grad f = v . f 472 473 Check: constant v(t) = {v0, w0}, x(t) = {x0 + v0 t, y0 + w0 t} 474 475 v0 f_x + w0 f_y = v . f 476 */ 477 static PetscErrorCode gaussian_phi_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 478 { 479 const PetscReal x0[2] = {0.5, 0.5}; 480 const PetscReal sigma = 1.0 / 6.0; 481 PetscScalar xn[2]; 482 483 PetscCall(constant_x_2d(dim, time, x0, Nf, xn, ctx)); 484 { 485 /* const PetscReal xi = x[0] + (sin(2.0*PETSC_PI*x[0])/(4.0*PETSC_PI*PETSC_PI))*t - x0[0]; */ 486 /* const PetscReal eta = x[1] + (-x[1]*cos(2.0*PETSC_PI*x[0])/(2.0*PETSC_PI))*t - x0[1]; */ 487 const PetscReal xi = x[0] - PetscRealPart(xn[0]); 488 const PetscReal eta = x[1] - PetscRealPart(xn[1]); 489 const PetscReal r2 = xi * xi + eta * eta; 490 491 u[0] = PetscExpReal(-r2 / (2.0 * sigma * sigma)) / (sigma * PetscSqrtReal(2.0 * PETSC_PI)); 492 } 493 return PETSC_SUCCESS; 494 } 495 496 static PetscErrorCode tilted_phi_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 497 { 498 PetscReal x0[3]; 499 const PetscReal wind[3] = {0.0, 1.0, 0.0}; 500 const PetscReal t = *((PetscReal *)ctx); 501 502 DMPlex_WaxpyD_Internal(2, -t, wind, x, x0); 503 if (x0[1] > 0) u[0] = 1.0 * x[0] + 3.0 * x[1]; 504 else u[0] = -2.0; /* Inflow state */ 505 return PETSC_SUCCESS; 506 } 507 508 static PetscErrorCode tilted_phi_coupled_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx) 509 { 510 PetscReal ur[3]; 511 PetscReal x0[3]; 512 const PetscReal t = *((PetscReal *)ctx); 513 514 ur[0] = PetscRealPart(u[0]); 515 ur[1] = PetscRealPart(u[1]); 516 ur[2] = PetscRealPart(u[2]); 517 DMPlex_WaxpyD_Internal(2, -t, ur, x, x0); 518 if (x0[1] > 0) u[0] = 1.0 * x[0] + 3.0 * x[1]; 519 else u[0] = -2.0; /* Inflow state */ 520 return PETSC_SUCCESS; 521 } 522 523 static PetscErrorCode advect_inflow(PetscReal time, const PetscReal *c, const PetscReal *n, const PetscScalar *xI, PetscScalar *xG, void *ctx) 524 { 525 AppCtx *user = (AppCtx *)ctx; 526 527 PetscFunctionBeginUser; 528 xG[0] = user->inflowState; 529 PetscFunctionReturn(PETSC_SUCCESS); 530 } 531 532 static PetscErrorCode advect_outflow(PetscReal time, const PetscReal *c, const PetscReal *n, const PetscScalar *xI, PetscScalar *xG, void *ctx) 533 { 534 PetscFunctionBeginUser; 535 //xG[0] = xI[dim]; 536 xG[0] = xI[2]; 537 PetscFunctionReturn(PETSC_SUCCESS); 538 } 539 540 static PetscErrorCode ExactSolution(DM dm, PetscReal time, const PetscReal *x, PetscScalar *u, void *ctx) 541 { 542 AppCtx *user = (AppCtx *)ctx; 543 PetscInt dim; 544 545 PetscFunctionBeginUser; 546 PetscCall(DMGetDimension(dm, &dim)); 547 switch (user->porosityDist) { 548 case TILTED: 549 if (user->velocityDist == VEL_ZERO) PetscCall(tilted_phi_2d(dim, time, x, 2, u, (void *)&time)); 550 else PetscCall(tilted_phi_coupled_2d(dim, time, x, 2, u, (void *)&time)); 551 break; 552 case GAUSSIAN: 553 PetscCall(gaussian_phi_2d(dim, time, x, 2, u, (void *)&time)); 554 break; 555 case DELTA: 556 PetscCall(delta_phi_2d(dim, time, x, 2, u, (void *)&time)); 557 break; 558 default: 559 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unknown solution type"); 560 } 561 PetscFunctionReturn(PETSC_SUCCESS); 562 } 563 564 static PetscErrorCode Functional_Error(DM dm, PetscReal time, const PetscReal *x, const PetscScalar *y, PetscReal *f, void *ctx) 565 { 566 AppCtx *user = (AppCtx *)ctx; 567 PetscScalar yexact[3] = {0, 0, 0}; 568 569 PetscFunctionBeginUser; 570 PetscCall(ExactSolution(dm, time, x, yexact, ctx)); 571 f[user->errorFunctional] = PetscAbsScalar(y[0] - yexact[0]); 572 PetscFunctionReturn(PETSC_SUCCESS); 573 } 574 575 static PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm) 576 { 577 PetscFunctionBeginUser; 578 PetscCall(DMCreate(comm, dm)); 579 PetscCall(DMSetType(*dm, DMPLEX)); 580 PetscCall(DMSetFromOptions(*dm)); 581 PetscCall(DMViewFromOptions(*dm, NULL, "-orig_dm_view")); 582 PetscFunctionReturn(PETSC_SUCCESS); 583 } 584 585 static PetscErrorCode SetupBC(DM dm, AppCtx *user) 586 { 587 PetscErrorCode (*exactFuncs[2])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx); 588 DMBoundaryType bdt[3] = {DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE}; 589 PetscDS prob; 590 DMLabel label; 591 PetscBool check; 592 PetscInt dim, n = 3; 593 const char *prefix; 594 595 PetscFunctionBeginUser; 596 PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 597 PetscCall(PetscOptionsGetEnumArray(NULL, prefix, "-dm_plex_box_bd", DMBoundaryTypes, (PetscEnum *)bdt, &n, NULL)); 598 PetscCall(DMGetDimension(dm, &dim)); 599 /* Set initial guesses and exact solutions */ 600 switch (dim) { 601 case 2: 602 user->initialGuess[0] = initialVelocity; 603 switch (user->porosityDist) { 604 case ZERO: 605 user->initialGuess[1] = zero_phi; 606 break; 607 case CONSTANT: 608 user->initialGuess[1] = constant_phi; 609 break; 610 case GAUSSIAN: 611 user->initialGuess[1] = gaussian_phi_2d; 612 break; 613 case DELTA: 614 user->initialGuess[1] = delta_phi_2d; 615 break; 616 case TILTED: 617 if (user->velocityDist == VEL_ZERO) user->initialGuess[1] = tilted_phi_2d; 618 else user->initialGuess[1] = tilted_phi_coupled_2d; 619 break; 620 } 621 break; 622 default: 623 SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_SUP, "Dimension %" PetscInt_FMT " not supported", dim); 624 } 625 exactFuncs[0] = user->initialGuess[0]; 626 exactFuncs[1] = user->initialGuess[1]; 627 switch (dim) { 628 case 2: 629 switch (user->velocityDist) { 630 case VEL_ZERO: 631 exactFuncs[0] = zero_u_2d; 632 break; 633 case VEL_CONSTANT: 634 exactFuncs[0] = constant_u_2d; 635 break; 636 case VEL_HARMONIC: 637 switch (bdt[0]) { 638 case DM_BOUNDARY_PERIODIC: 639 switch (bdt[1]) { 640 case DM_BOUNDARY_PERIODIC: 641 exactFuncs[0] = doubly_periodic_u_2d; 642 break; 643 default: 644 exactFuncs[0] = periodic_u_2d; 645 break; 646 } 647 break; 648 default: 649 exactFuncs[0] = quadratic_u_2d; 650 break; 651 } 652 break; 653 case VEL_SHEAR: 654 exactFuncs[0] = shear_bc; 655 break; 656 default: 657 SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 658 } 659 break; 660 default: 661 SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_SUP, "Dimension %" PetscInt_FMT " not supported", dim); 662 } 663 { 664 PetscBool isImplicit = PETSC_FALSE; 665 666 PetscCall(PetscOptionsHasName(NULL, "", "-use_implicit", &isImplicit)); 667 if (user->velocityDist == VEL_CONSTANT && !isImplicit) user->initialGuess[0] = exactFuncs[0]; 668 } 669 PetscCall(PetscOptionsHasName(NULL, NULL, "-dmts_check", &check)); 670 if (check) { 671 user->initialGuess[0] = exactFuncs[0]; 672 user->initialGuess[1] = exactFuncs[1]; 673 } 674 /* Set BC */ 675 PetscCall(DMGetDS(dm, &prob)); 676 PetscCall(DMGetLabel(dm, "marker", &label)); 677 PetscCall(PetscDSSetExactSolution(prob, 0, exactFuncs[0], user)); 678 PetscCall(PetscDSSetExactSolution(prob, 1, exactFuncs[1], user)); 679 if (label) { 680 const PetscInt id = 1; 681 682 PetscCall(DMAddBoundary(dm, DM_BC_ESSENTIAL, "wall", label, 1, &id, 0, 0, NULL, (void (*)(void))exactFuncs[0], NULL, user, NULL)); 683 } 684 PetscCall(DMGetLabel(dm, "Face Sets", &label)); 685 if (label && user->useFV) { 686 const PetscInt inflowids[] = {100, 200, 300}, outflowids[] = {101}; 687 688 PetscCall(DMAddBoundary(dm, DM_BC_NATURAL_RIEMANN, "inflow", label, PETSC_STATIC_ARRAY_LENGTH(inflowids), inflowids, 1, 0, NULL, (void (*)(void))advect_inflow, NULL, user, NULL)); 689 PetscCall(DMAddBoundary(dm, DM_BC_NATURAL_RIEMANN, "outflow", label, PETSC_STATIC_ARRAY_LENGTH(outflowids), outflowids, 1, 0, NULL, (void (*)(void))advect_outflow, NULL, user, NULL)); 690 } 691 PetscFunctionReturn(PETSC_SUCCESS); 692 } 693 694 static PetscErrorCode SetupProblem(DM dm, AppCtx *user) 695 { 696 DMBoundaryType bdt[3] = {DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE}; 697 PetscDS prob; 698 PetscInt n = 3; 699 const char *prefix; 700 701 PetscFunctionBeginUser; 702 PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 703 PetscCall(PetscOptionsGetEnumArray(NULL, prefix, "-dm_plex_box_bd", DMBoundaryTypes, (PetscEnum *)bdt, &n, NULL)); 704 PetscCall(DMGetDS(dm, &prob)); 705 switch (user->velocityDist) { 706 case VEL_ZERO: 707 PetscCall(PetscDSSetResidual(prob, 0, f0_zero_u, f1_constant_u)); 708 break; 709 case VEL_CONSTANT: 710 PetscCall(PetscDSSetResidual(prob, 0, f0_constant_u, f1_constant_u)); 711 PetscCall(PetscDSSetJacobian(prob, 0, 0, g0_constant_uu, NULL, NULL, NULL)); 712 PetscCall(PetscDSSetJacobian(prob, 1, 1, g0_constant_pp, NULL, NULL, NULL)); 713 break; 714 case VEL_HARMONIC: 715 switch (bdt[0]) { 716 case DM_BOUNDARY_PERIODIC: 717 switch (bdt[1]) { 718 case DM_BOUNDARY_PERIODIC: 719 PetscCall(PetscDSSetResidual(prob, 0, f0_lap_doubly_periodic_u, f1_lap_u)); 720 break; 721 default: 722 PetscCall(PetscDSSetResidual(prob, 0, f0_lap_periodic_u, f1_lap_u)); 723 break; 724 } 725 break; 726 default: 727 PetscCall(PetscDSSetResidual(prob, 0, f0_lap_u, f1_lap_u)); 728 break; 729 } 730 PetscCall(PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu)); 731 break; 732 case VEL_SHEAR: 733 PetscCall(PetscDSSetResidual(prob, 0, f0_zero_u, f1_lap_u)); 734 PetscCall(PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu)); 735 break; 736 } 737 PetscCall(PetscDSSetResidual(prob, 1, f0_advection, f1_advection)); 738 PetscCall(PetscDSSetJacobian(prob, 1, 1, g0_adv_pp, g1_adv_pp, NULL, NULL)); 739 PetscCall(PetscDSSetJacobian(prob, 1, 0, g0_adv_pu, g1_adv_pu, NULL, NULL)); 740 if (user->velocityDist == VEL_ZERO) PetscCall(PetscDSSetRiemannSolver(prob, 1, riemann_advection)); 741 else PetscCall(PetscDSSetRiemannSolver(prob, 1, riemann_coupled_advection)); 742 743 PetscCall(FunctionalRegister(&user->functionalRegistry, "Error", &user->errorFunctional, Functional_Error, user)); 744 PetscFunctionReturn(PETSC_SUCCESS); 745 } 746 747 static PetscErrorCode SetupDiscretization(DM dm, AppCtx *user) 748 { 749 DM cdm = dm; 750 PetscQuadrature q; 751 PetscFE fe[2]; 752 PetscFV fv; 753 MPI_Comm comm; 754 PetscInt dim; 755 756 PetscFunctionBeginUser; 757 /* Create finite element */ 758 PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 759 PetscCall(DMGetDimension(dm, &dim)); 760 PetscCall(PetscFECreateDefault(comm, dim, dim, PETSC_FALSE, "velocity_", PETSC_DEFAULT, &fe[0])); 761 PetscCall(PetscObjectSetName((PetscObject)fe[0], "velocity")); 762 PetscCall(PetscFECreateDefault(comm, dim, 1, PETSC_FALSE, "porosity_", PETSC_DEFAULT, &fe[1])); 763 PetscCall(PetscFECopyQuadrature(fe[0], fe[1])); 764 PetscCall(PetscObjectSetName((PetscObject)fe[1], "porosity")); 765 766 PetscCall(PetscFVCreate(PetscObjectComm((PetscObject)dm), &fv)); 767 PetscCall(PetscObjectSetName((PetscObject)fv, "porosity")); 768 PetscCall(PetscFVSetFromOptions(fv)); 769 PetscCall(PetscFVSetNumComponents(fv, 1)); 770 PetscCall(PetscFVSetSpatialDimension(fv, dim)); 771 PetscCall(PetscFEGetQuadrature(fe[0], &q)); 772 PetscCall(PetscFVSetQuadrature(fv, q)); 773 774 PetscCall(DMSetField(dm, 0, NULL, (PetscObject)fe[0])); 775 if (user->useFV) PetscCall(DMSetField(dm, 1, NULL, (PetscObject)fv)); 776 else PetscCall(DMSetField(dm, 1, NULL, (PetscObject)fe[1])); 777 PetscCall(DMCreateDS(dm)); 778 PetscCall(SetupProblem(dm, user)); 779 780 /* Set discretization and boundary conditions for each mesh */ 781 while (cdm) { 782 PetscCall(DMCopyDisc(dm, cdm)); 783 PetscCall(DMGetCoarseDM(cdm, &cdm)); 784 /* Coordinates were never localized for coarse meshes */ 785 if (cdm) PetscCall(DMLocalizeCoordinates(cdm)); 786 } 787 PetscCall(PetscFEDestroy(&fe[0])); 788 PetscCall(PetscFEDestroy(&fe[1])); 789 PetscCall(PetscFVDestroy(&fv)); 790 PetscFunctionReturn(PETSC_SUCCESS); 791 } 792 793 static PetscErrorCode CreateDM(MPI_Comm comm, AppCtx *user, DM *dm) 794 { 795 PetscFunctionBeginUser; 796 PetscCall(CreateMesh(comm, user, dm)); 797 /* Handle refinement, etc. */ 798 PetscCall(DMSetFromOptions(*dm)); 799 /* Construct ghost cells */ 800 if (user->useFV) { 801 DM gdm; 802 803 PetscCall(DMPlexConstructGhostCells(*dm, NULL, NULL, &gdm)); 804 PetscCall(DMDestroy(dm)); 805 *dm = gdm; 806 } 807 /* Localize coordinates */ 808 PetscCall(DMLocalizeCoordinates(*dm)); 809 PetscCall(PetscObjectSetName((PetscObject)(*dm), "Mesh")); 810 PetscCall(DMViewFromOptions(*dm, NULL, "-dm_view")); 811 /* Setup problem */ 812 PetscCall(SetupDiscretization(*dm, user)); 813 /* Setup BC */ 814 PetscCall(SetupBC(*dm, user)); 815 PetscFunctionReturn(PETSC_SUCCESS); 816 } 817 818 static PetscErrorCode SetInitialConditionFVM(DM dm, Vec X, PetscInt field, PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx) 819 { 820 PetscDS prob; 821 DM dmCell; 822 Vec cellgeom; 823 const PetscScalar *cgeom; 824 PetscScalar *x; 825 PetscInt dim, Nf, cStart, cEnd, c; 826 827 PetscFunctionBeginUser; 828 PetscCall(DMGetDS(dm, &prob)); 829 PetscCall(DMGetDimension(dm, &dim)); 830 PetscCall(PetscDSGetNumFields(prob, &Nf)); 831 PetscCall(DMPlexGetGeometryFVM(dm, NULL, &cellgeom, NULL)); 832 PetscCall(VecGetDM(cellgeom, &dmCell)); 833 PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 834 PetscCall(VecGetArrayRead(cellgeom, &cgeom)); 835 PetscCall(VecGetArray(X, &x)); 836 for (c = cStart; c < cEnd; ++c) { 837 PetscFVCellGeom *cg; 838 PetscScalar *xc; 839 840 PetscCall(DMPlexPointLocalRead(dmCell, c, cgeom, &cg)); 841 PetscCall(DMPlexPointGlobalFieldRef(dm, c, field, x, &xc)); 842 if (xc) PetscCall((*func)(dim, 0.0, cg->centroid, Nf, xc, ctx)); 843 } 844 PetscCall(VecRestoreArrayRead(cellgeom, &cgeom)); 845 PetscCall(VecRestoreArray(X, &x)); 846 PetscFunctionReturn(PETSC_SUCCESS); 847 } 848 849 static PetscErrorCode MonitorFunctionals(TS ts, PetscInt stepnum, PetscReal time, Vec X, void *ctx) 850 { 851 AppCtx *user = (AppCtx *)ctx; 852 char *ftable = NULL; 853 DM dm; 854 PetscSection s; 855 Vec cellgeom; 856 const PetscScalar *x; 857 PetscScalar *a; 858 PetscReal *xnorms; 859 PetscInt pStart, pEnd, p, Nf, f; 860 861 PetscFunctionBeginUser; 862 PetscCall(VecViewFromOptions(X, (PetscObject)ts, "-view_solution")); 863 PetscCall(VecGetDM(X, &dm)); 864 PetscCall(DMPlexGetGeometryFVM(dm, NULL, &cellgeom, NULL)); 865 PetscCall(DMGetLocalSection(dm, &s)); 866 PetscCall(PetscSectionGetNumFields(s, &Nf)); 867 PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 868 PetscCall(PetscCalloc1(Nf * 2, &xnorms)); 869 PetscCall(VecGetArrayRead(X, &x)); 870 for (p = pStart; p < pEnd; ++p) { 871 for (f = 0; f < Nf; ++f) { 872 PetscInt dof, cdof, d; 873 874 PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 875 PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof)); 876 PetscCall(DMPlexPointGlobalFieldRead(dm, p, f, x, &a)); 877 /* TODO Use constrained indices here */ 878 for (d = 0; d < dof - cdof; ++d) xnorms[f * 2 + 0] = PetscMax(xnorms[f * 2 + 0], PetscAbsScalar(a[d])); 879 for (d = 0; d < dof - cdof; ++d) xnorms[f * 2 + 1] += PetscAbsScalar(a[d]); 880 } 881 } 882 PetscCall(VecRestoreArrayRead(X, &x)); 883 if (stepnum >= 0) { /* No summary for final time */ 884 DM dmCell, *fdm; 885 Vec *fv; 886 const PetscScalar *cgeom; 887 PetscScalar **fx; 888 PetscReal *fmin, *fmax, *fint, *ftmp, t; 889 PetscInt cStart, cEnd, c, fcount, f, num; 890 891 size_t ftableused, ftablealloc; 892 893 /* Functionals have indices after registering, this is an upper bound */ 894 fcount = user->numMonitorFuncs; 895 PetscCall(PetscMalloc4(fcount, &fmin, fcount, &fmax, fcount, &fint, fcount, &ftmp)); 896 PetscCall(PetscMalloc3(fcount, &fdm, fcount, &fv, fcount, &fx)); 897 for (f = 0; f < fcount; ++f) { 898 PetscSection fs; 899 const char *name = user->monitorFuncs[f]->name; 900 901 fmin[f] = PETSC_MAX_REAL; 902 fmax[f] = PETSC_MIN_REAL; 903 fint[f] = 0; 904 /* Make monitor vecs */ 905 PetscCall(DMClone(dm, &fdm[f])); 906 PetscCall(DMGetOutputSequenceNumber(dm, &num, &t)); 907 PetscCall(DMSetOutputSequenceNumber(fdm[f], num, t)); 908 PetscCall(PetscSectionClone(s, &fs)); 909 PetscCall(PetscSectionSetFieldName(fs, 0, NULL)); 910 PetscCall(PetscSectionSetFieldName(fs, 1, name)); 911 PetscCall(DMSetLocalSection(fdm[f], fs)); 912 PetscCall(PetscSectionDestroy(&fs)); 913 PetscCall(DMGetGlobalVector(fdm[f], &fv[f])); 914 PetscCall(PetscObjectSetName((PetscObject)fv[f], name)); 915 PetscCall(VecGetArray(fv[f], &fx[f])); 916 } 917 PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 918 PetscCall(VecGetDM(cellgeom, &dmCell)); 919 PetscCall(VecGetArrayRead(cellgeom, &cgeom)); 920 PetscCall(VecGetArrayRead(X, &x)); 921 for (c = cStart; c < cEnd; ++c) { 922 PetscFVCellGeom *cg; 923 PetscScalar *cx; 924 925 PetscCall(DMPlexPointLocalRead(dmCell, c, cgeom, &cg)); 926 PetscCall(DMPlexPointGlobalFieldRead(dm, c, 1, x, &cx)); 927 if (!cx) continue; /* not a global cell */ 928 for (f = 0; f < user->numMonitorFuncs; ++f) { 929 Functional func = user->monitorFuncs[f]; 930 PetscScalar *fxc; 931 932 PetscCall(DMPlexPointGlobalFieldRef(dm, c, 1, fx[f], &fxc)); 933 /* I need to make it easier to get interpolated values here */ 934 PetscCall((*func->func)(dm, time, cg->centroid, cx, ftmp, func->ctx)); 935 fxc[0] = ftmp[user->monitorFuncs[f]->offset]; 936 } 937 for (f = 0; f < fcount; ++f) { 938 fmin[f] = PetscMin(fmin[f], ftmp[f]); 939 fmax[f] = PetscMax(fmax[f], ftmp[f]); 940 fint[f] += cg->volume * ftmp[f]; 941 } 942 } 943 PetscCall(VecRestoreArrayRead(cellgeom, &cgeom)); 944 PetscCall(VecRestoreArrayRead(X, &x)); 945 PetscCall(MPIU_Allreduce(MPI_IN_PLACE, fmin, fcount, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)ts))); 946 PetscCall(MPIU_Allreduce(MPI_IN_PLACE, fmax, fcount, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)ts))); 947 PetscCall(MPIU_Allreduce(MPI_IN_PLACE, fint, fcount, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)ts))); 948 /* Output functional data */ 949 ftablealloc = fcount * 100; 950 ftableused = 0; 951 PetscCall(PetscCalloc1(ftablealloc, &ftable)); 952 for (f = 0; f < user->numMonitorFuncs; ++f) { 953 Functional func = user->monitorFuncs[f]; 954 PetscInt id = func->offset; 955 char newline[] = "\n"; 956 char buffer[256], *p, *prefix; 957 size_t countused, len; 958 959 /* Create string with functional outputs */ 960 if (f % 3) { 961 PetscCall(PetscArraycpy(buffer, " ", 2)); 962 p = buffer + 2; 963 } else if (f) { 964 PetscCall(PetscArraycpy(buffer, newline, sizeof(newline) - 1)); 965 p = buffer + sizeof(newline) - 1; 966 } else { 967 p = buffer; 968 } 969 PetscCall(PetscSNPrintfCount(p, sizeof buffer - (p - buffer), "%12s [%12.6g,%12.6g] int %12.6g", &countused, func->name, (double)fmin[id], (double)fmax[id], (double)fint[id])); 970 countused += p - buffer; 971 /* reallocate */ 972 if (countused > ftablealloc - ftableused - 1) { 973 char *ftablenew; 974 975 ftablealloc = 2 * ftablealloc + countused; 976 PetscCall(PetscMalloc1(ftablealloc, &ftablenew)); 977 PetscCall(PetscArraycpy(ftablenew, ftable, ftableused)); 978 PetscCall(PetscFree(ftable)); 979 ftable = ftablenew; 980 } 981 PetscCall(PetscArraycpy(ftable + ftableused, buffer, countused)); 982 ftableused += countused; 983 ftable[ftableused] = 0; 984 /* Output vecs */ 985 PetscCall(VecRestoreArray(fv[f], &fx[f])); 986 PetscCall(PetscStrlen(func->name, &len)); 987 PetscCall(PetscMalloc1(len + 2, &prefix)); 988 PetscCall(PetscStrncpy(prefix, func->name, len + 2)); 989 PetscCall(PetscStrlcat(prefix, "_", len + 2)); 990 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fv[f], prefix)); 991 PetscCall(VecViewFromOptions(fv[f], NULL, "-vec_view")); 992 PetscCall(PetscFree(prefix)); 993 PetscCall(DMRestoreGlobalVector(fdm[f], &fv[f])); 994 PetscCall(DMDestroy(&fdm[f])); 995 } 996 PetscCall(PetscFree4(fmin, fmax, fint, ftmp)); 997 PetscCall(PetscFree3(fdm, fv, fx)); 998 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), "% 3" PetscInt_FMT " time %8.4g |x| (", stepnum, (double)time)); 999 for (f = 0; f < Nf; ++f) { 1000 if (f > 0) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), ", ")); 1001 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), "%8.4g", (double)xnorms[f * 2 + 0])); 1002 } 1003 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), ") |x|_1 (")); 1004 for (f = 0; f < Nf; ++f) { 1005 if (f > 0) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), ", ")); 1006 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), "%8.4g", (double)xnorms[f * 2 + 1])); 1007 } 1008 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)ts), ") %s\n", ftable ? ftable : "")); 1009 PetscCall(PetscFree(ftable)); 1010 } 1011 PetscCall(PetscFree(xnorms)); 1012 PetscFunctionReturn(PETSC_SUCCESS); 1013 } 1014 1015 int main(int argc, char **argv) 1016 { 1017 MPI_Comm comm; 1018 TS ts; 1019 DM dm; 1020 Vec u; 1021 AppCtx user; 1022 PetscReal t0, t = 0.0; 1023 void *ctxs[2]; 1024 1025 ctxs[0] = &t; 1026 ctxs[1] = &t; 1027 PetscFunctionBeginUser; 1028 PetscCall(PetscInitialize(&argc, &argv, (char *)0, help)); 1029 comm = PETSC_COMM_WORLD; 1030 user.functionalRegistry = NULL; 1031 globalUser = &user; 1032 PetscCall(ProcessOptions(comm, &user)); 1033 PetscCall(TSCreate(comm, &ts)); 1034 PetscCall(TSSetType(ts, TSBEULER)); 1035 PetscCall(CreateDM(comm, &user, &dm)); 1036 PetscCall(TSSetDM(ts, dm)); 1037 PetscCall(ProcessMonitorOptions(comm, &user)); 1038 1039 PetscCall(DMCreateGlobalVector(dm, &u)); 1040 PetscCall(PetscObjectSetName((PetscObject)u, "solution")); 1041 if (user.useFV) { 1042 PetscBool isImplicit = PETSC_FALSE; 1043 1044 PetscCall(PetscOptionsHasName(NULL, "", "-use_implicit", &isImplicit)); 1045 if (isImplicit) { 1046 PetscCall(DMTSSetIFunctionLocal(dm, DMPlexTSComputeIFunctionFEM, &user)); 1047 PetscCall(DMTSSetIJacobianLocal(dm, DMPlexTSComputeIJacobianFEM, &user)); 1048 } 1049 PetscCall(DMTSSetBoundaryLocal(dm, DMPlexTSComputeBoundary, &user)); 1050 PetscCall(DMTSSetRHSFunctionLocal(dm, DMPlexTSComputeRHSFunctionFVM, &user)); 1051 } else { 1052 PetscCall(DMTSSetBoundaryLocal(dm, DMPlexTSComputeBoundary, &user)); 1053 PetscCall(DMTSSetIFunctionLocal(dm, DMPlexTSComputeIFunctionFEM, &user)); 1054 PetscCall(DMTSSetIJacobianLocal(dm, DMPlexTSComputeIJacobianFEM, &user)); 1055 } 1056 if (user.useFV) PetscCall(TSMonitorSet(ts, MonitorFunctionals, &user, NULL)); 1057 PetscCall(TSSetMaxSteps(ts, 1)); 1058 PetscCall(TSSetMaxTime(ts, 2.0)); 1059 PetscCall(TSSetTimeStep(ts, 0.01)); 1060 PetscCall(TSSetExactFinalTime(ts, TS_EXACTFINALTIME_STEPOVER)); 1061 PetscCall(TSSetFromOptions(ts)); 1062 1063 PetscCall(DMProjectFunction(dm, 0.0, user.initialGuess, ctxs, INSERT_VALUES, u)); 1064 if (user.useFV) PetscCall(SetInitialConditionFVM(dm, u, 1, user.initialGuess[1], ctxs[1])); 1065 PetscCall(VecViewFromOptions(u, NULL, "-init_vec_view")); 1066 PetscCall(TSGetTime(ts, &t)); 1067 t0 = t; 1068 PetscCall(DMTSCheckFromOptions(ts, u)); 1069 PetscCall(TSSolve(ts, u)); 1070 PetscCall(TSGetTime(ts, &t)); 1071 if (t > t0) PetscCall(DMTSCheckFromOptions(ts, u)); 1072 PetscCall(VecViewFromOptions(u, NULL, "-sol_vec_view")); 1073 { 1074 PetscReal ftime; 1075 PetscInt nsteps; 1076 TSConvergedReason reason; 1077 1078 PetscCall(TSGetSolveTime(ts, &ftime)); 1079 PetscCall(TSGetStepNumber(ts, &nsteps)); 1080 PetscCall(TSGetConvergedReason(ts, &reason)); 1081 PetscCall(PetscPrintf(PETSC_COMM_WORLD, "%s at time %g after %" PetscInt_FMT " steps\n", TSConvergedReasons[reason], (double)ftime, nsteps)); 1082 } 1083 1084 PetscCall(VecDestroy(&u)); 1085 PetscCall(DMDestroy(&dm)); 1086 PetscCall(TSDestroy(&ts)); 1087 PetscCall(PetscFree(user.monitorFuncs)); 1088 PetscCall(FunctionalDestroy(&user.functionalRegistry)); 1089 PetscCall(PetscFinalize()); 1090 return 0; 1091 } 1092 1093 /*TEST 1094 1095 testset: 1096 args: -dm_plex_simplex 0 -dm_plex_box_faces 3,3,3 1097 1098 # 2D harmonic velocity, no porosity 1099 test: 1100 suffix: p1p1 1101 requires: !complex !single 1102 args: -velocity_petscspace_degree 1 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_factor_shift_type nonzero -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1103 test: 1104 suffix: p1p1_xper 1105 requires: !complex !single 1106 args: -dm_refine 1 -dm_plex_box_bd periodic,none -velocity_petscspace_degree 1 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu -pc_factor_shift_type nonzero -ksp_rtol 1.0e-8 -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1107 test: 1108 suffix: p1p1_xper_ref 1109 requires: !complex !single 1110 args: -dm_refine 2 -dm_plex_box_bd periodic,none -velocity_petscspace_degree 1 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu -pc_factor_shift_type nonzero -ksp_rtol 1.0e-8 -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1111 test: 1112 suffix: p1p1_xyper 1113 requires: !complex !single 1114 args: -dm_refine 1 -dm_plex_box_bd periodic,periodic -velocity_petscspace_degree 1 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu -pc_factor_shift_type nonzero -ksp_rtol 1.0e-8 -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1115 test: 1116 suffix: p1p1_xyper_ref 1117 requires: !complex !single 1118 args: -dm_refine 2 -dm_plex_box_bd periodic,periodic -velocity_petscspace_degree 1 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu -pc_factor_shift_type nonzero -ksp_rtol 1.0e-8 -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1119 test: 1120 suffix: p2p1 1121 requires: !complex !single 1122 args: -velocity_petscspace_degree 2 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1123 test: 1124 suffix: p2p1_xyper 1125 requires: !complex !single 1126 args: -dm_refine 1 -dm_plex_box_bd periodic,periodic -velocity_petscspace_degree 2 -porosity_petscspace_degree 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu -pc_factor_shift_type nonzero -ksp_rtol 1.0e-8 -ts_monitor -snes_error_if_not_converged -ksp_error_if_not_converged -dmts_check 1127 1128 test: 1129 suffix: adv_1 1130 requires: !complex !single 1131 args: -use_fv -velocity_dist zero -porosity_dist tilted -ts_type ssp -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -bc_inflow 1,2,4 -bc_outflow 3 -ts_view -dm_view 1132 1133 test: 1134 suffix: adv_2 1135 requires: !complex 1136 TODO: broken memory corruption 1137 args: -use_fv -velocity_dist zero -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -bc_inflow 3,4 -bc_outflow 1,2 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -ksp_max_it 100 -ts_view -dm_view -snes_converged_reason -ksp_converged_reason 1138 1139 test: 1140 suffix: adv_3 1141 requires: !complex 1142 TODO: broken memory corruption 1143 args: -dm_plex_box_bd periodic,none -use_fv -velocity_dist zero -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -bc_inflow 3 -bc_outflow 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -ksp_max_it 100 -ts_view -dm_view -snes_converged_reason 1144 1145 test: 1146 suffix: adv_3_ex 1147 requires: !complex 1148 args: -dm_plex_box_bd periodic,none -use_fv -velocity_dist zero -porosity_dist tilted -ts_type ssp -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.1 -bc_inflow 3 -bc_outflow 1 -snes_fd_color -ksp_max_it 100 -ts_view -dm_view 1149 1150 test: 1151 suffix: adv_4 1152 requires: !complex 1153 TODO: broken memory corruption 1154 args: -use_fv -velocity_dist zero -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -bc_inflow 3 -bc_outflow 1 -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -ksp_max_it 100 -ts_view -dm_view -snes_converged_reason 1155 1156 # 2D Advection, box, delta 1157 test: 1158 suffix: adv_delta_yper_0 1159 requires: !complex 1160 TODO: broken 1161 args: -dm_plex_box_bd none,periodic -use_fv -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type euler -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -dm_view -monitor Error 1162 1163 test: 1164 suffix: adv_delta_yper_1 1165 requires: !complex 1166 TODO: broken 1167 args: -dm_plex_box_bd none,periodic -use_fv -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type euler -ts_max_time 5.0 -ts_max_steps 40 -ts_dt 0.166666 -bc_inflow 2 -bc_outflow 4 -ts_view -dm_view -monitor Error -dm_refine 1 -source_loc 0.416666,0.416666 1168 1169 test: 1170 suffix: adv_delta_yper_2 1171 requires: !complex 1172 TODO: broken 1173 args: -dm_plex_box_bd none,periodic -use_fv -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type euler -ts_max_time 5.0 -ts_max_steps 80 -ts_dt 0.083333 -bc_inflow 2 -bc_outflow 4 -ts_view -dm_view -monitor Error -dm_refine 2 -source_loc 0.458333,0.458333 1174 1175 test: 1176 suffix: adv_delta_yper_fim_0 1177 requires: !complex 1178 TODO: broken 1179 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 0 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -mat_coloring_greedy_symmetric 0 -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason 1180 1181 test: 1182 suffix: adv_delta_yper_fim_1 1183 requires: !complex 1184 TODO: broken 1185 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -mat_coloring_greedy_symmetric 0 -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -snes_linesearch_type basic 1186 1187 test: 1188 suffix: adv_delta_yper_fim_2 1189 requires: !complex 1190 TODO: broken 1191 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 2 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -mat_coloring_greedy_symmetric 0 -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -snes_linesearch_type basic 1192 1193 test: 1194 suffix: adv_delta_yper_im_0 1195 requires: !complex 1196 TODO: broken 1197 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 0 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_mimex_version 0 -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason 1198 1199 test: 1200 suffix: adv_delta_yper_im_1 1201 requires: !complex 1202 TODO: broken 1203 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 0 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_mimex_version 0 -ts_max_time 5.0 -ts_max_steps 40 -ts_dt 0.166666 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -dm_refine 1 -source_loc 0.416666,0.416666 1204 1205 test: 1206 suffix: adv_delta_yper_im_2 1207 requires: !complex 1208 TODO: broken 1209 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 0 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_mimex_version 0 -ts_max_time 5.0 -ts_max_steps 80 -ts_dt 0.083333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -dm_refine 2 -source_loc 0.458333,0.458333 1210 1211 test: 1212 suffix: adv_delta_yper_im_3 1213 requires: !complex 1214 TODO: broken 1215 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_mimex_version 0 -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason 1216 1217 # I believe the nullspace is sin(pi y) 1218 test: 1219 suffix: adv_delta_yper_im_4 1220 requires: !complex 1221 TODO: broken 1222 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_mimex_version 0 -ts_max_time 5.0 -ts_max_steps 40 -ts_dt 0.166666 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -dm_refine 1 -source_loc 0.416666,0.416666 1223 1224 test: 1225 suffix: adv_delta_yper_im_5 1226 requires: !complex 1227 TODO: broken 1228 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_mimex_version 0 -ts_max_time 5.0 -ts_max_steps 80 -ts_dt 0.083333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -dm_refine 2 -source_loc 0.458333,0.458333 1229 1230 test: 1231 suffix: adv_delta_yper_im_6 1232 requires: !complex 1233 TODO: broken 1234 args: -dm_plex_box_bd none,periodic -use_fv -use_implicit -velocity_petscspace_degree 2 -velocity_dist constant -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 2 -bc_outflow 4 -ts_view -monitor Error -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type svd -snes_converged_reason 1235 # 2D Advection, magma benchmark 1 1236 1237 test: 1238 suffix: adv_delta_shear_im_0 1239 requires: !complex 1240 TODO: broken 1241 args: -dm_plex_box_bd periodic,none -dm_refine 2 -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist shear -porosity_dist delta -inflow_state 0.0 -ts_type mimex -ts_max_time 5.0 -ts_max_steps 20 -ts_dt 0.333333 -bc_inflow 1,3 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 -pc_type lu -snes_converged_reason -source_loc 0.458333,0.708333 1242 # 2D Advection, box, gaussian 1243 1244 test: 1245 suffix: adv_gauss 1246 requires: !complex 1247 TODO: broken 1248 args: -use_fv -velocity_dist constant -porosity_dist gaussian -inflow_state 0.0 -ts_type ssp -ts_max_time 2.0 -ts_max_steps 100 -ts_dt 0.01 -bc_inflow 1 -bc_outflow 3 -ts_view -dm_view 1249 1250 test: 1251 suffix: adv_gauss_im 1252 requires: !complex 1253 TODO: broken 1254 args: -use_fv -use_implicit -velocity_dist constant -porosity_dist gaussian -inflow_state 0.0 -ts_type beuler -ts_max_time 2.0 -ts_max_steps 100 -ts_dt 0.01 -bc_inflow 1 -bc_outflow 3 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 1255 1256 test: 1257 suffix: adv_gauss_im_1 1258 requires: !complex 1259 TODO: broken 1260 args: -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist constant -porosity_dist gaussian -inflow_state 0.0 -ts_type beuler -ts_max_time 2.0 -ts_max_steps 100 -ts_dt 0.01 -bc_inflow 1 -bc_outflow 3 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 1261 1262 test: 1263 suffix: adv_gauss_im_2 1264 requires: !complex 1265 TODO: broken 1266 args: -use_fv -use_implicit -velocity_petscspace_degree 2 -velocity_dist constant -porosity_dist gaussian -inflow_state 0.0 -ts_type beuler -ts_max_time 2.0 -ts_max_steps 100 -ts_dt 0.01 -bc_inflow 1 -bc_outflow 3 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -snes_rtol 1.0e-7 1267 1268 test: 1269 suffix: adv_gauss_corner 1270 requires: !complex 1271 TODO: broken 1272 args: -use_fv -velocity_dist constant -porosity_dist gaussian -inflow_state 0.0 -ts_type ssp -ts_max_time 2.0 -ts_max_steps 100 -ts_dt 0.01 -bc_inflow 1 -bc_outflow 2 -ts_view -dm_view 1273 1274 # 2D Advection+Harmonic 12- 1275 test: 1276 suffix: adv_harm_0 1277 requires: !complex 1278 TODO: broken memory corruption 1279 args: -velocity_petscspace_degree 2 -use_fv -velocity_dist harmonic -porosity_dist gaussian -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -bc_inflow 1,2,4 -bc_outflow 3 -use_implicit -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -ksp_max_it 100 -ts_view -dm_view -snes_converged_reason -ksp_converged_reason -snes_monitor -dmts_check 1280 1281 # Must check that FV BCs propagate to coarse meshes 1282 # Must check that FV BC ids propagate to coarse meshes 1283 # Must check that FE+FV BCs work at the same time 1284 # 2D Advection, matching wind in ex11 8-11 1285 # NOTE implicit solves are limited by accuracy of FD Jacobian 1286 test: 1287 suffix: adv_0 1288 requires: !complex !single exodusii 1289 args: -dm_plex_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/sevenside-quad.exo -use_fv -velocity_dist zero -porosity_dist tilted -ts_type ssp -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -ts_view -dm_view 1290 1291 test: 1292 suffix: adv_0_im 1293 requires: !complex exodusii 1294 TODO: broken memory corruption 1295 args: -dm_plex_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/sevenside-quad.exo -use_fv -use_implicit -velocity_dist zero -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu 1296 1297 test: 1298 suffix: adv_0_im_2 1299 requires: !complex exodusii 1300 TODO: broken 1301 args: -dm_plex_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/sevenside-quad.exo -use_fv -use_implicit -velocity_dist constant -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type lu -snes_rtol 1.0e-7 1302 1303 test: 1304 suffix: adv_0_im_3 1305 requires: !complex exodusii 1306 TODO: broken 1307 args: -dm_plex_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/sevenside-quad.exo -use_fv -use_implicit -velocity_petscspace_degree 1 -velocity_dist constant -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type svd -snes_rtol 1.0e-7 1308 1309 test: 1310 suffix: adv_0_im_4 1311 requires: !complex exodusii 1312 TODO: broken 1313 args: -dm_plex_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/sevenside-quad.exo -use_fv -use_implicit -velocity_petscspace_degree 2 -velocity_dist constant -porosity_dist tilted -ts_type beuler -ts_max_time 2.0 -ts_max_steps 1000 -ts_dt 0.993392 -ts_view -dm_view -snes_fd_color -snes_fd_color_use_mat -mat_coloring_type greedy -pc_type svd -snes_rtol 1.0e-7 1314 # 2D Advection, misc 1315 1316 TEST*/ 1317