1c4762a1bSJed Brown static char help[] = "Solves a ODE-constrained optimization problem -- finding the optimal initial conditions for the van der Pol equation.\n"; 2c4762a1bSJed Brown 30e3d61c9SBarry Smith /* 4c4762a1bSJed Brown Concepts: TS^time-dependent nonlinear problems 5c4762a1bSJed Brown Concepts: TS^van der Pol equation DAE equivalent 6ee300463SSatish Balay Concepts: TS^Optimization using adjoint sensitivity analysis 7c4762a1bSJed Brown Processors: 1 8c4762a1bSJed Brown */ 90e3d61c9SBarry Smith /* 10c4762a1bSJed Brown Notes: 11c4762a1bSJed Brown This code demonstrates how to solve an ODE-constrained optimization problem with TAO, TSAdjoint and TS. 12c4762a1bSJed Brown The nonlinear problem is written in an ODE equivalent form. 13c4762a1bSJed Brown The objective is to minimize the difference between observation and model prediction by finding optimal values for initial conditions. 14c4762a1bSJed Brown The gradient is computed with the discrete adjoint of an implicit method or an explicit method, see ex20adj.c for details. 15c4762a1bSJed Brown */ 16c4762a1bSJed Brown 17c4762a1bSJed Brown #include <petsctao.h> 18c4762a1bSJed Brown #include <petscts.h> 19c4762a1bSJed Brown 20c4762a1bSJed Brown typedef struct _n_User *User; 21c4762a1bSJed Brown struct _n_User { 22c4762a1bSJed Brown TS ts; 23c4762a1bSJed Brown PetscReal mu; 24c4762a1bSJed Brown PetscReal next_output; 25c4762a1bSJed Brown 26c4762a1bSJed Brown /* Sensitivity analysis support */ 27c4762a1bSJed Brown PetscInt steps; 28c4762a1bSJed Brown PetscReal ftime; 29c4762a1bSJed Brown Mat A; /* Jacobian matrix for ODE */ 30c4762a1bSJed Brown Mat Jacp; /* JacobianP matrix for ODE*/ 31c4762a1bSJed Brown Mat H; /* Hessian matrix for optimization */ 32c4762a1bSJed Brown Vec U,Lambda[1],Mup[1]; /* first-order adjoint variables */ 33c4762a1bSJed Brown Vec Lambda2[2]; /* second-order adjoint variables */ 34c4762a1bSJed Brown Vec Ihp1[1]; /* working space for Hessian evaluations */ 35c4762a1bSJed Brown Vec Dir; /* direction vector */ 36c4762a1bSJed Brown PetscReal ob[2]; /* observation used by the cost function */ 37c4762a1bSJed Brown PetscBool implicitform; /* implicit ODE? */ 38c4762a1bSJed Brown }; 39c4762a1bSJed Brown PetscErrorCode Adjoint2(Vec,PetscScalar[],User); 40c4762a1bSJed Brown 41c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 42c4762a1bSJed Brown 43c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx) 44c4762a1bSJed Brown { 45c4762a1bSJed Brown User user = (User)ctx; 46c4762a1bSJed Brown PetscScalar *f; 47c4762a1bSJed Brown const PetscScalar *u; 48c4762a1bSJed Brown 49c4762a1bSJed Brown PetscFunctionBeginUser; 50*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 51*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(F,&f)); 52c4762a1bSJed Brown f[0] = u[1]; 53c4762a1bSJed Brown f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]); 54*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 55*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(F,&f)); 56c4762a1bSJed Brown PetscFunctionReturn(0); 57c4762a1bSJed Brown } 58c4762a1bSJed Brown 59c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx) 60c4762a1bSJed Brown { 61c4762a1bSJed Brown User user = (User)ctx; 62c4762a1bSJed Brown PetscReal mu = user->mu; 63c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 64c4762a1bSJed Brown PetscScalar J[2][2]; 65c4762a1bSJed Brown const PetscScalar *u; 66c4762a1bSJed Brown 67c4762a1bSJed Brown PetscFunctionBeginUser; 68*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 69c4762a1bSJed Brown J[0][0] = 0; 70c4762a1bSJed Brown J[1][0] = -mu*(2.0*u[1]*u[0]+1.); 71c4762a1bSJed Brown J[0][1] = 1.0; 72c4762a1bSJed Brown J[1][1] = mu*(1.0-u[0]*u[0]); 73*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 74*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 75*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 76c4762a1bSJed Brown if (A != B) { 77*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 78*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 79c4762a1bSJed Brown } 80*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 81c4762a1bSJed Brown PetscFunctionReturn(0); 82c4762a1bSJed Brown } 83c4762a1bSJed Brown 84c4762a1bSJed Brown static PetscErrorCode RHSHessianProductUU(TS ts,PetscReal t,Vec U,Vec *Vl,Vec Vr,Vec *VHV,void *ctx) 85c4762a1bSJed Brown { 86c4762a1bSJed Brown const PetscScalar *vl,*vr,*u; 87c4762a1bSJed Brown PetscScalar *vhv; 88c4762a1bSJed Brown PetscScalar dJdU[2][2][2]={{{0}}}; 89c4762a1bSJed Brown PetscInt i,j,k; 90c4762a1bSJed Brown User user = (User)ctx; 91c4762a1bSJed Brown 92c4762a1bSJed Brown PetscFunctionBeginUser; 93*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 94*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(Vl[0],&vl)); 95*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(Vr,&vr)); 96*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(VHV[0],&vhv)); 97c4762a1bSJed Brown 98c4762a1bSJed Brown dJdU[1][0][0] = -2.*user->mu*u[1]; 99c4762a1bSJed Brown dJdU[1][1][0] = -2.*user->mu*u[0]; 100c4762a1bSJed Brown dJdU[1][0][1] = -2.*user->mu*u[0]; 101c4762a1bSJed Brown for (j=0;j<2;j++) { 102c4762a1bSJed Brown vhv[j] = 0; 103c4762a1bSJed Brown for (k=0;k<2;k++) 104c4762a1bSJed Brown for (i=0;i<2;i++) 105c4762a1bSJed Brown vhv[j] += vl[i]*dJdU[i][j][k]*vr[k]; 106c4762a1bSJed Brown } 107*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 108*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(Vl[0],&vl)); 109*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(Vr,&vr)); 110*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(VHV[0],&vhv)); 111c4762a1bSJed Brown PetscFunctionReturn(0); 112c4762a1bSJed Brown } 113c4762a1bSJed Brown 114c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 115c4762a1bSJed Brown 116c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx) 117c4762a1bSJed Brown { 118c4762a1bSJed Brown User user = (User)ctx; 119c4762a1bSJed Brown const PetscScalar *u,*udot; 120c4762a1bSJed Brown PetscScalar *f; 121c4762a1bSJed Brown 122c4762a1bSJed Brown PetscFunctionBeginUser; 123*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 124*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(Udot,&udot)); 125*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(F,&f)); 126c4762a1bSJed Brown f[0] = udot[0] - u[1]; 127c4762a1bSJed Brown f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]) ; 128*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 129*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(Udot,&udot)); 130*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(F,&f)); 131c4762a1bSJed Brown PetscFunctionReturn(0); 132c4762a1bSJed Brown } 133c4762a1bSJed Brown 134c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx) 135c4762a1bSJed Brown { 136c4762a1bSJed Brown User user = (User)ctx; 137c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 138c4762a1bSJed Brown PetscScalar J[2][2]; 139c4762a1bSJed Brown const PetscScalar *u; 140c4762a1bSJed Brown 141c4762a1bSJed Brown PetscFunctionBeginUser; 142*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 143c4762a1bSJed Brown J[0][0] = a; J[0][1] = -1.0; 144c4762a1bSJed Brown J[1][0] = user->mu*(1.0 + 2.0*u[0]*u[1]); J[1][1] = a - user->mu*(1.0-u[0]*u[0]); 145*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 146*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 147*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 148*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 149c4762a1bSJed Brown if (A != B) { 150*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 151*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 152c4762a1bSJed Brown } 153c4762a1bSJed Brown PetscFunctionReturn(0); 154c4762a1bSJed Brown } 155c4762a1bSJed Brown 156c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 157c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx) 158c4762a1bSJed Brown { 159c4762a1bSJed Brown PetscErrorCode ierr; 160c4762a1bSJed Brown const PetscScalar *u; 161c4762a1bSJed Brown PetscReal tfinal, dt; 162c4762a1bSJed Brown User user = (User)ctx; 163c4762a1bSJed Brown Vec interpolatedU; 164c4762a1bSJed Brown 165c4762a1bSJed Brown PetscFunctionBeginUser; 166*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetTimeStep(ts,&dt)); 167*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetMaxTime(ts,&tfinal)); 168c4762a1bSJed Brown 169c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 170*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(U,&interpolatedU)); 171*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSInterpolate(ts,user->next_output,interpolatedU)); 172*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(interpolatedU,&u)); 173c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD,"[%g] %D TS %g (dt = %g) X %g %g\n", 174c4762a1bSJed Brown (double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(u[0]), 175c4762a1bSJed Brown (double)PetscRealPart(u[1]));CHKERRQ(ierr); 176*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(interpolatedU,&u)); 177*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&interpolatedU)); 178c4762a1bSJed Brown user->next_output += 0.1; 179c4762a1bSJed Brown } 180c4762a1bSJed Brown PetscFunctionReturn(0); 181c4762a1bSJed Brown } 182c4762a1bSJed Brown 183c4762a1bSJed Brown static PetscErrorCode IHessianProductUU(TS ts,PetscReal t,Vec U,Vec *Vl,Vec Vr,Vec *VHV,void *ctx) 184c4762a1bSJed Brown { 185c4762a1bSJed Brown const PetscScalar *vl,*vr,*u; 186c4762a1bSJed Brown PetscScalar *vhv; 187c4762a1bSJed Brown PetscScalar dJdU[2][2][2]={{{0}}}; 188c4762a1bSJed Brown PetscInt i,j,k; 189c4762a1bSJed Brown User user = (User)ctx; 190c4762a1bSJed Brown 191c4762a1bSJed Brown PetscFunctionBeginUser; 192*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(U,&u)); 193*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(Vl[0],&vl)); 194*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(Vr,&vr)); 195*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(VHV[0],&vhv)); 196c4762a1bSJed Brown dJdU[1][0][0] = 2.*user->mu*u[1]; 197c4762a1bSJed Brown dJdU[1][1][0] = 2.*user->mu*u[0]; 198c4762a1bSJed Brown dJdU[1][0][1] = 2.*user->mu*u[0]; 199c4762a1bSJed Brown for (j=0;j<2;j++) { 200c4762a1bSJed Brown vhv[j] = 0; 201c4762a1bSJed Brown for (k=0;k<2;k++) 202c4762a1bSJed Brown for (i=0;i<2;i++) 203c4762a1bSJed Brown vhv[j] += vl[i]*dJdU[i][j][k]*vr[k]; 204c4762a1bSJed Brown } 205*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(U,&u)); 206*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(Vl[0],&vl)); 207*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(Vr,&vr)); 208*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(VHV[0],&vhv)); 209c4762a1bSJed Brown PetscFunctionReturn(0); 210c4762a1bSJed Brown } 211c4762a1bSJed Brown 212c4762a1bSJed Brown /* ------------------ User-defined routines for TAO -------------------------- */ 213c4762a1bSJed Brown 214c4762a1bSJed Brown static PetscErrorCode FormFunctionGradient(Tao tao,Vec IC,PetscReal *f,Vec G,void *ctx) 215c4762a1bSJed Brown { 216c4762a1bSJed Brown User user_ptr = (User)ctx; 217c4762a1bSJed Brown TS ts = user_ptr->ts; 218c4762a1bSJed Brown const PetscScalar *x_ptr; 219c4762a1bSJed Brown PetscScalar *y_ptr; 220c4762a1bSJed Brown 221c4762a1bSJed Brown PetscFunctionBeginUser; 222*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(IC,user_ptr->U)); /* set up the initial condition */ 223c4762a1bSJed Brown 224*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTime(ts,0.0)); 225*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetStepNumber(ts,0)); 226*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTimeStep(ts,0.001)); /* can be overwritten by command line options */ 227*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetFromOptions(ts)); 228*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSolve(ts,user_ptr->U)); 229c4762a1bSJed Brown 230*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(user_ptr->U,&x_ptr)); 231*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user_ptr->Lambda[0],&y_ptr)); 232c4762a1bSJed Brown *f = (x_ptr[0]-user_ptr->ob[0])*(x_ptr[0]-user_ptr->ob[0])+(x_ptr[1]-user_ptr->ob[1])*(x_ptr[1]-user_ptr->ob[1]); 233c4762a1bSJed Brown y_ptr[0] = 2.*(x_ptr[0]-user_ptr->ob[0]); 234c4762a1bSJed Brown y_ptr[1] = 2.*(x_ptr[1]-user_ptr->ob[1]); 235*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user_ptr->Lambda[0],&y_ptr)); 236*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(user_ptr->U,&x_ptr)); 237c4762a1bSJed Brown 238*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetCostGradients(ts,1,user_ptr->Lambda,NULL)); 239*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointSolve(ts)); 240*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(user_ptr->Lambda[0],G)); 241c4762a1bSJed Brown PetscFunctionReturn(0); 242c4762a1bSJed Brown } 243c4762a1bSJed Brown 244c4762a1bSJed Brown static PetscErrorCode FormHessian(Tao tao,Vec U,Mat H,Mat Hpre,void *ctx) 245c4762a1bSJed Brown { 246c4762a1bSJed Brown User user_ptr = (User)ctx; 247c4762a1bSJed Brown PetscScalar harr[2]; 248c4762a1bSJed Brown PetscScalar *x_ptr; 249c4762a1bSJed Brown const PetscInt rows[2] = {0,1}; 250c4762a1bSJed Brown PetscInt col; 251c4762a1bSJed Brown 252c4762a1bSJed Brown PetscFunctionBeginUser; 253*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(U,user_ptr->U)); 254*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user_ptr->Dir,&x_ptr)); 255c4762a1bSJed Brown x_ptr[0] = 1.; 256c4762a1bSJed Brown x_ptr[1] = 0.; 257*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user_ptr->Dir,&x_ptr)); 258*5f80ce2aSJacob Faibussowitsch CHKERRQ(Adjoint2(user_ptr->U,harr,user_ptr)); 259c4762a1bSJed Brown col = 0; 260*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(H,2,rows,1,&col,harr,INSERT_VALUES)); 261c4762a1bSJed Brown 262*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(U,user_ptr->U)); 263*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user_ptr->Dir,&x_ptr)); 264c4762a1bSJed Brown x_ptr[0] = 0.; 265c4762a1bSJed Brown x_ptr[1] = 1.; 266*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user_ptr->Dir,&x_ptr)); 267*5f80ce2aSJacob Faibussowitsch CHKERRQ(Adjoint2(user_ptr->U,harr,user_ptr)); 268c4762a1bSJed Brown col = 1; 269*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(H,2,rows,1,&col,harr,INSERT_VALUES)); 270c4762a1bSJed Brown 271*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(H,MAT_FINAL_ASSEMBLY)); 272*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(H,MAT_FINAL_ASSEMBLY)); 273c4762a1bSJed Brown if (H != Hpre) { 274*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(Hpre,MAT_FINAL_ASSEMBLY)); 275*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(Hpre,MAT_FINAL_ASSEMBLY)); 276c4762a1bSJed Brown } 277c4762a1bSJed Brown PetscFunctionReturn(0); 278c4762a1bSJed Brown } 279c4762a1bSJed Brown 280c4762a1bSJed Brown static PetscErrorCode MatrixFreeHessian(Tao tao,Vec U,Mat H,Mat Hpre,void *ctx) 281c4762a1bSJed Brown { 282c4762a1bSJed Brown User user_ptr = (User)ctx; 283c4762a1bSJed Brown 284c4762a1bSJed Brown PetscFunctionBeginUser; 285*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(U,user_ptr->U)); 286c4762a1bSJed Brown PetscFunctionReturn(0); 287c4762a1bSJed Brown } 288c4762a1bSJed Brown 289c4762a1bSJed Brown /* ------------ Routines calculating second-order derivatives -------------- */ 290c4762a1bSJed Brown 2910e3d61c9SBarry Smith /* 292c4762a1bSJed Brown Compute the Hessian-vector product for the cost function using Second-order adjoint 293c4762a1bSJed Brown */ 294c4762a1bSJed Brown PetscErrorCode Adjoint2(Vec U,PetscScalar arr[],User ctx) 295c4762a1bSJed Brown { 296c4762a1bSJed Brown TS ts = ctx->ts; 297c4762a1bSJed Brown PetscScalar *x_ptr,*y_ptr; 298c4762a1bSJed Brown Mat tlmsen; 299c4762a1bSJed Brown 300c4762a1bSJed Brown PetscFunctionBeginUser; 301*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointReset(ts)); 302c4762a1bSJed Brown 303*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTime(ts,0.0)); 304*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetStepNumber(ts,0)); 305*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTimeStep(ts,0.001)); 306*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetFromOptions(ts)); 307*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetCostHessianProducts(ts,1,ctx->Lambda2,NULL,ctx->Dir)); 308*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointSetForward(ts,NULL)); 309*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSolve(ts,U)); 310c4762a1bSJed Brown 311c4762a1bSJed Brown /* Set terminal conditions for first- and second-order adjonts */ 312*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(U,&x_ptr)); 313*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(ctx->Lambda[0],&y_ptr)); 314c4762a1bSJed Brown y_ptr[0] = 2.*(x_ptr[0]-ctx->ob[0]); 315c4762a1bSJed Brown y_ptr[1] = 2.*(x_ptr[1]-ctx->ob[1]); 316*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(ctx->Lambda[0],&y_ptr)); 317*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(U,&x_ptr)); 318*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSForwardGetSensitivities(ts,NULL,&tlmsen)); 319*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetColumn(tlmsen,0,&x_ptr)); 320*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(ctx->Lambda2[0],&y_ptr)); 321c4762a1bSJed Brown y_ptr[0] = 2.*x_ptr[0]; 322c4762a1bSJed Brown y_ptr[1] = 2.*x_ptr[1]; 323*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(ctx->Lambda2[0],&y_ptr)); 324*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreColumn(tlmsen,&x_ptr)); 325c4762a1bSJed Brown 326*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetCostGradients(ts,1,ctx->Lambda,NULL)); 327c4762a1bSJed Brown if (ctx->implicitform) { 328*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetIHessianProduct(ts,ctx->Ihp1,IHessianProductUU,NULL,NULL,NULL,NULL,NULL,NULL,ctx)); 329c4762a1bSJed Brown } else { 330*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetRHSHessianProduct(ts,ctx->Ihp1,RHSHessianProductUU,NULL,NULL,NULL,NULL,NULL,NULL,ctx)); 331c4762a1bSJed Brown } 332*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointSolve(ts)); 333c4762a1bSJed Brown 334*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(ctx->Lambda2[0],&x_ptr)); 335c4762a1bSJed Brown arr[0] = x_ptr[0]; 336c4762a1bSJed Brown arr[1] = x_ptr[1]; 337*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(ctx->Lambda2[0],&x_ptr)); 338c4762a1bSJed Brown 339*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointReset(ts)); 340*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSAdjointResetForward(ts)); 341c4762a1bSJed Brown PetscFunctionReturn(0); 342c4762a1bSJed Brown } 343c4762a1bSJed Brown 344c4762a1bSJed Brown PetscErrorCode FiniteDiff(Vec U,PetscScalar arr[],User ctx) 345c4762a1bSJed Brown { 346c4762a1bSJed Brown Vec Up,G,Gp; 347c4762a1bSJed Brown const PetscScalar eps = PetscRealConstant(1e-7); 348c4762a1bSJed Brown PetscScalar *u; 349c4762a1bSJed Brown Tao tao = NULL; 350c4762a1bSJed Brown PetscReal f; 351c4762a1bSJed Brown 352c4762a1bSJed Brown PetscFunctionBeginUser; 353*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(U,&Up)); 354*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(U,&G)); 355*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(U,&Gp)); 356c4762a1bSJed Brown 357*5f80ce2aSJacob Faibussowitsch CHKERRQ(FormFunctionGradient(tao,U,&f,G,ctx)); 358c4762a1bSJed Brown 359*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(U,Up)); 360*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(Up,&u)); 361c4762a1bSJed Brown u[0] += eps; 362*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(Up,&u)); 363*5f80ce2aSJacob Faibussowitsch CHKERRQ(FormFunctionGradient(tao,Up,&f,Gp,ctx)); 364*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecAXPY(Gp,-1,G)); 365*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecScale(Gp,1./eps)); 366*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(Gp,&u)); 367c4762a1bSJed Brown arr[0] = u[0]; 368c4762a1bSJed Brown arr[1] = u[1]; 369*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(Gp,&u)); 370c4762a1bSJed Brown 371*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(U,Up)); 372*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(Up,&u)); 373c4762a1bSJed Brown u[1] += eps; 374*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(Up,&u)); 375*5f80ce2aSJacob Faibussowitsch CHKERRQ(FormFunctionGradient(tao,Up,&f,Gp,ctx)); 376*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecAXPY(Gp,-1,G)); 377*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecScale(Gp,1./eps)); 378*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(Gp,&u)); 379c4762a1bSJed Brown arr[2] = u[0]; 380c4762a1bSJed Brown arr[3] = u[1]; 381*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(Gp,&u)); 382c4762a1bSJed Brown 383*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&G)); 384*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&Gp)); 385*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&Up)); 386c4762a1bSJed Brown PetscFunctionReturn(0); 387c4762a1bSJed Brown } 388c4762a1bSJed Brown 389c4762a1bSJed Brown static PetscErrorCode HessianProductMat(Mat mat,Vec svec,Vec y) 390c4762a1bSJed Brown { 391c4762a1bSJed Brown User user_ptr; 392c4762a1bSJed Brown PetscScalar *y_ptr; 393c4762a1bSJed Brown 394c4762a1bSJed Brown PetscFunctionBeginUser; 395*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatShellGetContext(mat,&user_ptr)); 396*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(svec,user_ptr->Dir)); 397*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y,&y_ptr)); 398*5f80ce2aSJacob Faibussowitsch CHKERRQ(Adjoint2(user_ptr->U,y_ptr,user_ptr)); 399*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y,&y_ptr)); 400c4762a1bSJed Brown PetscFunctionReturn(0); 401c4762a1bSJed Brown } 402c4762a1bSJed Brown 403c4762a1bSJed Brown int main(int argc,char **argv) 404c4762a1bSJed Brown { 405c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE,mf = PETSC_TRUE; 406c4762a1bSJed Brown PetscInt mode = 0; 407c4762a1bSJed Brown PetscMPIInt size; 408c4762a1bSJed Brown struct _n_User user; 409c4762a1bSJed Brown Vec x; /* working vector for TAO */ 410c4762a1bSJed Brown PetscScalar *x_ptr,arr[4]; 411c4762a1bSJed Brown PetscScalar ic1 = 2.2,ic2 = -0.7; /* initial guess for TAO */ 412c4762a1bSJed Brown Tao tao; 413c4762a1bSJed Brown KSP ksp; 414c4762a1bSJed Brown PC pc; 415c4762a1bSJed Brown PetscErrorCode ierr; 416c4762a1bSJed Brown 417c4762a1bSJed Brown /* Initialize program */ 418c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,NULL,help);if (ierr) return ierr; 419*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size)); 4203c633725SBarry Smith PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!"); 421c4762a1bSJed Brown 422c4762a1bSJed Brown /* Set runtime options */ 423c4762a1bSJed Brown user.next_output = 0.0; 424c4762a1bSJed Brown user.mu = 1.0e3; 425c4762a1bSJed Brown user.steps = 0; 426c4762a1bSJed Brown user.ftime = 0.5; 427c4762a1bSJed Brown user.implicitform = PETSC_TRUE; 428c4762a1bSJed Brown 429*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL)); 430*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL)); 431*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetInt(NULL,NULL,"-mode",&mode,NULL)); 432*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-ic1",&ic1,NULL)); 433*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-ic2",&ic2,NULL)); 434*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-my_tao_mf",&mf,NULL)); /* matrix-free hessian for optimization */ 435*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-implicitform",&user.implicitform,NULL)); 436c4762a1bSJed Brown 437c4762a1bSJed Brown /* Create necessary matrix and vectors, solve same ODE on every process */ 438*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_WORLD,&user.A)); 439*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2)); 440*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetFromOptions(user.A)); 441*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(user.A)); 442*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.U,NULL)); 443*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.Dir,NULL)); 444*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.Lambda[0],NULL)); 445*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.Lambda2[0],NULL)); 446*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(user.A,&user.Ihp1[0],NULL)); 447c4762a1bSJed Brown 448c4762a1bSJed Brown /* Create timestepping solver context */ 449*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSCreate(PETSC_COMM_WORLD,&user.ts)); 450*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetEquationType(user.ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 451c4762a1bSJed Brown if (user.implicitform) { 452*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetIFunction(user.ts,NULL,IFunction,&user)); 453*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetIJacobian(user.ts,user.A,user.A,IJacobian,&user)); 454*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetType(user.ts,TSCN)); 455c4762a1bSJed Brown } else { 456*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetRHSFunction(user.ts,NULL,RHSFunction,&user)); 457*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetRHSJacobian(user.ts,user.A,user.A,RHSJacobian,&user)); 458*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetType(user.ts,TSRK)); 459c4762a1bSJed Brown } 460*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetMaxTime(user.ts,user.ftime)); 461*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetExactFinalTime(user.ts,TS_EXACTFINALTIME_MATCHSTEP)); 462c4762a1bSJed Brown 463c4762a1bSJed Brown if (monitor) { 464*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSMonitorSet(user.ts,Monitor,&user,NULL)); 465c4762a1bSJed Brown } 466c4762a1bSJed Brown 467c4762a1bSJed Brown /* Set ODE initial conditions */ 468*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.U,&x_ptr)); 469c4762a1bSJed Brown x_ptr[0] = 2.0; 470c4762a1bSJed Brown x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu); 471*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.U,&x_ptr)); 472c4762a1bSJed Brown 473c4762a1bSJed Brown /* Set runtime options */ 474*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetFromOptions(user.ts)); 475c4762a1bSJed Brown 476c4762a1bSJed Brown /* Obtain the observation */ 477*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSolve(user.ts,user.U)); 478*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.U,&x_ptr)); 479c4762a1bSJed Brown user.ob[0] = x_ptr[0]; 480c4762a1bSJed Brown user.ob[1] = x_ptr[1]; 481*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.U,&x_ptr)); 482c4762a1bSJed Brown 483*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(user.U,&x)); 484*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(x,&x_ptr)); 485c4762a1bSJed Brown x_ptr[0] = ic1; 486c4762a1bSJed Brown x_ptr[1] = ic2; 487*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(x,&x_ptr)); 488c4762a1bSJed Brown 489c4762a1bSJed Brown /* Save trajectory of solution so that TSAdjointSolve() may be used */ 490*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetSaveTrajectory(user.ts)); 491c4762a1bSJed Brown 492c4762a1bSJed Brown /* Compare finite difference and second-order adjoint. */ 493c4762a1bSJed Brown switch (mode) { 494c4762a1bSJed Brown case 2 : 495*5f80ce2aSJacob Faibussowitsch CHKERRQ(FiniteDiff(x,arr,&user)); 496*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n Finite difference approximation of the Hessian\n")); 497*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"%g %g\n%g %g\n",(double)arr[0],(double)arr[1],(double)arr[2],(double)arr[3])); 498c4762a1bSJed Brown break; 499c4762a1bSJed Brown case 1 : /* Compute the Hessian column by column */ 500*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(x,user.U)); 501*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.Dir,&x_ptr)); 502c4762a1bSJed Brown x_ptr[0] = 1.; 503c4762a1bSJed Brown x_ptr[1] = 0.; 504*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.Dir,&x_ptr)); 505*5f80ce2aSJacob Faibussowitsch CHKERRQ(Adjoint2(user.U,arr,&user)); 506*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\nFirst column of the Hessian\n")); 507*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"%g\n%g\n",(double)arr[0],(double)arr[1])); 508*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(x,user.U)); 509*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(user.Dir,&x_ptr)); 510c4762a1bSJed Brown x_ptr[0] = 0.; 511c4762a1bSJed Brown x_ptr[1] = 1.; 512*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(user.Dir,&x_ptr)); 513*5f80ce2aSJacob Faibussowitsch CHKERRQ(Adjoint2(user.U,arr,&user)); 514*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\nSecond column of the Hessian\n")); 515*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"%g\n%g\n",(double)arr[0],(double)arr[1])); 516c4762a1bSJed Brown break; 517c4762a1bSJed Brown case 0 : 518c4762a1bSJed Brown /* Create optimization context and set up */ 519*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoCreate(PETSC_COMM_WORLD,&tao)); 520*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSetType(tao,TAOBLMVM)); 521*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSetObjectiveAndGradient(tao,NULL,FormFunctionGradient,(void *)&user)); 522c4762a1bSJed Brown 523c4762a1bSJed Brown if (mf) { 524*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateShell(PETSC_COMM_SELF,2,2,2,2,(void*)&user,&user.H)); 525*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatShellSetOperation(user.H,MATOP_MULT,(void(*)(void))HessianProductMat)); 526*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(user.H,MAT_SYMMETRIC,PETSC_TRUE)); 527*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSetHessian(tao,user.H,user.H,MatrixFreeHessian,(void *)&user)); 528c4762a1bSJed Brown } else { /* Create Hessian matrix */ 529*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_WORLD,&user.H)); 530*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(user.H,PETSC_DECIDE,PETSC_DECIDE,2,2)); 531*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(user.H)); 532*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSetHessian(tao,user.H,user.H,FormHessian,(void *)&user)); 533c4762a1bSJed Brown } 534c4762a1bSJed Brown 535c4762a1bSJed Brown /* Not use any preconditioner */ 536*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoGetKSP(tao,&ksp)); 537c4762a1bSJed Brown if (ksp) { 538*5f80ce2aSJacob Faibussowitsch CHKERRQ(KSPGetPC(ksp,&pc)); 539*5f80ce2aSJacob Faibussowitsch CHKERRQ(PCSetType(pc,PCNONE)); 540c4762a1bSJed Brown } 541c4762a1bSJed Brown 542c4762a1bSJed Brown /* Set initial solution guess */ 543*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSetSolution(tao,x)); 544*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSetFromOptions(tao)); 545*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoSolve(tao)); 546*5f80ce2aSJacob Faibussowitsch CHKERRQ(TaoDestroy(&tao)); 547*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&user.H)); 548c4762a1bSJed Brown break; 549c4762a1bSJed Brown default: 550c4762a1bSJed Brown break; 551c4762a1bSJed Brown } 552c4762a1bSJed Brown 553c4762a1bSJed Brown /* Free work space. All PETSc objects should be destroyed when they are no longer needed. */ 554*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&user.A)); 555*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.U)); 556*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.Lambda[0])); 557*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.Lambda2[0])); 558*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.Ihp1[0])); 559*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&user.Dir)); 560*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSDestroy(&user.ts)); 561*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&x)); 562c4762a1bSJed Brown ierr = PetscFinalize(); 563c4762a1bSJed Brown return(ierr); 564c4762a1bSJed Brown } 565c4762a1bSJed Brown 566c4762a1bSJed Brown /*TEST 567c4762a1bSJed Brown build: 568c4762a1bSJed Brown requires: !complex !single 569c4762a1bSJed Brown 570c4762a1bSJed Brown test: 571c4762a1bSJed Brown args: -ts_type cn -viewer_binary_skip_info -tao_monitor -tao_view -mu 1000 -ts_dt 0.03125 572c4762a1bSJed Brown output_file: output/ex20opt_ic_1.out 573c4762a1bSJed Brown 574c4762a1bSJed Brown test: 575c4762a1bSJed Brown suffix: 2 576c4762a1bSJed Brown args: -ts_type beuler -viewer_binary_skip_info -tao_monitor -tao_view -mu 100 -ts_dt 0.01 -tao_type bntr -tao_bnk_pc_type none 577c4762a1bSJed Brown output_file: output/ex20opt_ic_2.out 578c4762a1bSJed Brown 579c4762a1bSJed Brown test: 580c4762a1bSJed Brown suffix: 3 581c4762a1bSJed Brown args: -ts_type cn -viewer_binary_skip_info -tao_monitor -tao_view -mu 100 -ts_dt 0.01 -tao_type bntr -tao_bnk_pc_type none 582c4762a1bSJed Brown output_file: output/ex20opt_ic_3.out 583c4762a1bSJed Brown 584c4762a1bSJed Brown test: 585c4762a1bSJed Brown suffix: 4 586c4762a1bSJed Brown args: -implicitform 0 -ts_dt 0.01 -ts_max_steps 2 -ts_rhs_jacobian_test_mult_transpose -mat_shell_test_mult_transpose_view -ts_rhs_jacobian_test_mult -mat_shell_test_mult_view -mode 1 -my_tao_mf 587c4762a1bSJed Brown TEST*/ 588