1c4762a1bSJed Brown static char help[] = "Time-dependent PDE in 2d for calculating joint PDF. \n";
2c4762a1bSJed Brown /*
3c4762a1bSJed Brown p_t = -x_t*p_x -y_t*p_y + f(t)*p_yy
4c4762a1bSJed Brown xmin < x < xmax, ymin < y < ymax;
5c4762a1bSJed Brown
6c4762a1bSJed Brown Boundary conditions:
7c4762a1bSJed Brown Zero dirichlet in y using ghosted values
8c4762a1bSJed Brown Periodic in x
9c4762a1bSJed Brown
10c4762a1bSJed Brown Note that x_t and y_t in the above are given functions of x and y; they are not derivatives of x and y.
11c4762a1bSJed Brown x_t = (y - ws)
12c4762a1bSJed Brown y_t = (ws/2H)*(Pm - Pmax*sin(x) - D*(w - ws))
13c4762a1bSJed Brown
14c4762a1bSJed Brown In this example, we can see the effect of a fault, that zeroes the electrical power output
15c4762a1bSJed Brown Pmax*sin(x), on the PDF. The fault on/off times can be controlled by options -tf and -tcl respectively.
16c4762a1bSJed Brown
17c4762a1bSJed Brown */
18c4762a1bSJed Brown
19c4762a1bSJed Brown #include <petscdm.h>
20c4762a1bSJed Brown #include <petscdmda.h>
21c4762a1bSJed Brown #include <petscts.h>
22c4762a1bSJed Brown
23c4762a1bSJed Brown /*
24c4762a1bSJed Brown User-defined data structures and routines
25c4762a1bSJed Brown */
26c4762a1bSJed Brown typedef struct {
27c4762a1bSJed Brown PetscScalar ws; /* Synchronous speed */
28c4762a1bSJed Brown PetscScalar H; /* Inertia constant */
29c4762a1bSJed Brown PetscScalar D; /* Damping constant */
30c4762a1bSJed Brown PetscScalar Pmax, Pmax_s; /* Maximum power output of generator */
31c4762a1bSJed Brown PetscScalar PM_min; /* Mean mechanical power input */
32c4762a1bSJed Brown PetscScalar lambda; /* correlation time */
33c4762a1bSJed Brown PetscScalar q; /* noise strength */
34c4762a1bSJed Brown PetscScalar mux; /* Initial average angle */
35c4762a1bSJed Brown PetscScalar sigmax; /* Standard deviation of initial angle */
36c4762a1bSJed Brown PetscScalar muy; /* Average speed */
37c4762a1bSJed Brown PetscScalar sigmay; /* standard deviation of initial speed */
38c4762a1bSJed Brown PetscScalar rho; /* Cross-correlation coefficient */
39c4762a1bSJed Brown PetscScalar xmin; /* left boundary of angle */
40c4762a1bSJed Brown PetscScalar xmax; /* right boundary of angle */
41c4762a1bSJed Brown PetscScalar ymin; /* bottom boundary of speed */
42c4762a1bSJed Brown PetscScalar ymax; /* top boundary of speed */
43c4762a1bSJed Brown PetscScalar dx; /* x step size */
44c4762a1bSJed Brown PetscScalar dy; /* y step size */
45c4762a1bSJed Brown PetscScalar disper_coe; /* Dispersion coefficient */
46c4762a1bSJed Brown DM da;
47c4762a1bSJed Brown PetscInt st_width; /* Stencil width */
48c4762a1bSJed Brown DMBoundaryType bx; /* x boundary type */
49c4762a1bSJed Brown DMBoundaryType by; /* y boundary type */
50c4762a1bSJed Brown PetscReal tf, tcl; /* Fault incidence and clearing times */
51c4762a1bSJed Brown } AppCtx;
52c4762a1bSJed Brown
53c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx *);
54c4762a1bSJed Brown PetscErrorCode ini_bou(Vec, AppCtx *);
55c4762a1bSJed Brown PetscErrorCode IFunction(TS, PetscReal, Vec, Vec, Vec, void *);
56c4762a1bSJed Brown PetscErrorCode IJacobian(TS, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *);
57c4762a1bSJed Brown PetscErrorCode PostStep(TS);
58c4762a1bSJed Brown
main(int argc,char ** argv)59d71ae5a4SJacob Faibussowitsch int main(int argc, char **argv)
60d71ae5a4SJacob Faibussowitsch {
61c4762a1bSJed Brown Vec x; /* Solution vector */
62c4762a1bSJed Brown TS ts; /* Time-stepping context */
63c4762a1bSJed Brown AppCtx user; /* Application context */
64c4762a1bSJed Brown PetscViewer viewer;
65c4762a1bSJed Brown
66327415f7SBarry Smith PetscFunctionBeginUser;
679566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, "petscopt_ex8", help));
68c4762a1bSJed Brown
69c4762a1bSJed Brown /* Get physics and time parameters */
709566063dSJacob Faibussowitsch PetscCall(Parameter_settings(&user));
71c4762a1bSJed Brown /* Create a 2D DA with dof = 1 */
729566063dSJacob Faibussowitsch PetscCall(DMDACreate2d(PETSC_COMM_WORLD, user.bx, user.by, DMDA_STENCIL_STAR, 4, 4, PETSC_DECIDE, PETSC_DECIDE, 1, user.st_width, NULL, NULL, &user.da));
739566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(user.da));
749566063dSJacob Faibussowitsch PetscCall(DMSetUp(user.da));
75c4762a1bSJed Brown /* Set x and y coordinates */
769566063dSJacob Faibussowitsch PetscCall(DMDASetUniformCoordinates(user.da, user.xmin, user.xmax, user.ymin, user.ymax, 0, 0));
779566063dSJacob Faibussowitsch PetscCall(DMDASetCoordinateName(user.da, 0, "X - the angle"));
789566063dSJacob Faibussowitsch PetscCall(DMDASetCoordinateName(user.da, 1, "Y - the speed"));
79c4762a1bSJed Brown
80c4762a1bSJed Brown /* Get global vector x from DM */
819566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(user.da, &x));
82c4762a1bSJed Brown
839566063dSJacob Faibussowitsch PetscCall(ini_bou(x, &user));
849566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryOpen(PETSC_COMM_WORLD, "ini_x", FILE_MODE_WRITE, &viewer));
859566063dSJacob Faibussowitsch PetscCall(VecView(x, viewer));
869566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer));
87c4762a1bSJed Brown
889566063dSJacob Faibussowitsch PetscCall(TSCreate(PETSC_COMM_WORLD, &ts));
899566063dSJacob Faibussowitsch PetscCall(TSSetDM(ts, user.da));
909566063dSJacob Faibussowitsch PetscCall(TSSetProblemType(ts, TS_NONLINEAR));
919566063dSJacob Faibussowitsch PetscCall(TSSetType(ts, TSARKIMEX));
929566063dSJacob Faibussowitsch PetscCall(TSSetIFunction(ts, NULL, IFunction, &user));
939566063dSJacob Faibussowitsch /* PetscCall(TSSetIJacobian(ts,NULL,NULL,IJacobian,&user)); */
949566063dSJacob Faibussowitsch PetscCall(TSSetApplicationContext(ts, &user));
959566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts, .005));
969566063dSJacob Faibussowitsch PetscCall(TSSetFromOptions(ts));
979566063dSJacob Faibussowitsch PetscCall(TSSetPostStep(ts, PostStep));
989566063dSJacob Faibussowitsch PetscCall(TSSolve(ts, x));
99c4762a1bSJed Brown
1009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryOpen(PETSC_COMM_WORLD, "fin_x", FILE_MODE_WRITE, &viewer));
1019566063dSJacob Faibussowitsch PetscCall(VecView(x, viewer));
1029566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer));
103c4762a1bSJed Brown
1049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x));
1059566063dSJacob Faibussowitsch PetscCall(DMDestroy(&user.da));
1069566063dSJacob Faibussowitsch PetscCall(TSDestroy(&ts));
1079566063dSJacob Faibussowitsch PetscCall(PetscFinalize());
108b122ec5aSJacob Faibussowitsch return 0;
109c4762a1bSJed Brown }
110c4762a1bSJed Brown
PostStep(TS ts)111d71ae5a4SJacob Faibussowitsch PetscErrorCode PostStep(TS ts)
112d71ae5a4SJacob Faibussowitsch {
113c4762a1bSJed Brown Vec X;
114c4762a1bSJed Brown AppCtx *user;
115c4762a1bSJed Brown PetscReal t;
116c4762a1bSJed Brown PetscScalar asum;
117c4762a1bSJed Brown
118c4762a1bSJed Brown PetscFunctionBegin;
1199566063dSJacob Faibussowitsch PetscCall(TSGetApplicationContext(ts, &user));
1209566063dSJacob Faibussowitsch PetscCall(TSGetTime(ts, &t));
1219566063dSJacob Faibussowitsch PetscCall(TSGetSolution(ts, &X));
122c4762a1bSJed Brown /*
123c4762a1bSJed Brown if (t >= .2) {
1249566063dSJacob Faibussowitsch PetscCall(TSGetSolution(ts,&X));
1259566063dSJacob Faibussowitsch PetscCall(VecView(X,PETSC_VIEWER_BINARY_WORLD));
126c4762a1bSJed Brown exit(0);
127c4762a1bSJed Brown results in initial conditions after fault in binaryoutput
128c4762a1bSJed Brown }*/
129c4762a1bSJed Brown
130c4762a1bSJed Brown if ((t > user->tf) && (t < user->tcl)) user->Pmax = 0.0; /* A short-circuit that drives the electrical power output (Pmax*sin(delta)) to zero */
131c4762a1bSJed Brown else user->Pmax = user->Pmax_s;
132c4762a1bSJed Brown
1339566063dSJacob Faibussowitsch PetscCall(VecSum(X, &asum));
13457508eceSPierre Jolivet PetscCall(PetscPrintf(PETSC_COMM_WORLD, "sum(p) at t = %f = %f\n", (double)t, (double)asum));
1353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
136c4762a1bSJed Brown }
137c4762a1bSJed Brown
ini_bou(Vec X,AppCtx * user)138d71ae5a4SJacob Faibussowitsch PetscErrorCode ini_bou(Vec X, AppCtx *user)
139d71ae5a4SJacob Faibussowitsch {
140c4762a1bSJed Brown DM cda;
141c4762a1bSJed Brown DMDACoor2d **coors;
142c4762a1bSJed Brown PetscScalar **p;
143c4762a1bSJed Brown Vec gc;
144c4762a1bSJed Brown PetscInt M, N, Ir, J;
145c4762a1bSJed Brown PetscMPIInt rank;
146c4762a1bSJed Brown
147c4762a1bSJed Brown PetscFunctionBeginUser;
1489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank));
1499566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(user->da, NULL, &M, &N, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL));
1509371c9d4SSatish Balay user->dx = (user->xmax - user->xmin) / (M - 1);
1519371c9d4SSatish Balay user->dy = (user->ymax - user->ymin) / (N - 1);
1529566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(user->da, &cda));
1539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(user->da, &gc));
1549566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayRead(cda, gc, &coors));
1559566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArray(user->da, X, &p));
156c4762a1bSJed Brown
157c4762a1bSJed Brown /* Point mass at (mux,muy) */
15863a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Original user->mux = %f, user->muy = %f\n", (double)PetscRealPart(user->mux), (double)PetscRealPart(user->muy)));
1599566063dSJacob Faibussowitsch PetscCall(DMDAGetLogicalCoordinate(user->da, user->mux, user->muy, 0.0, &Ir, &J, NULL, &user->mux, &user->muy, NULL));
160c4762a1bSJed Brown user->PM_min = user->Pmax * PetscSinScalar(user->mux);
1619371c9d4SSatish Balay PetscCall(
1629371c9d4SSatish Balay PetscPrintf(PETSC_COMM_WORLD, "Corrected user->mux = %f, user->muy = %f user->PM_min = %f,user->dx = %f\n", (double)PetscRealPart(user->mux), (double)PetscRealPart(user->muy), (double)PetscRealPart(user->PM_min), (double)PetscRealPart(user->dx)));
163ad540459SPierre Jolivet if (Ir > -1 && J > -1) p[J][Ir] = 1.0;
164c4762a1bSJed Brown
1659566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayRead(cda, gc, &coors));
1669566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArray(user->da, X, &p));
1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
168c4762a1bSJed Brown }
169c4762a1bSJed Brown
170c4762a1bSJed Brown /* First advection term */
adv1(PetscScalar ** p,PetscScalar y,PetscInt i,PetscInt j,PetscInt M,PetscScalar * p1,AppCtx * user)171d71ae5a4SJacob Faibussowitsch PetscErrorCode adv1(PetscScalar **p, PetscScalar y, PetscInt i, PetscInt j, PetscInt M, PetscScalar *p1, AppCtx *user)
172d71ae5a4SJacob Faibussowitsch {
1734d86920dSPierre Jolivet PetscScalar f = (y - user->ws), fpos = PetscMax(f, 0), fneg = PetscMin(f, 0);
1744d86920dSPierre Jolivet
175c4762a1bSJed Brown PetscFunctionBegin;
176c4762a1bSJed Brown if (user->st_width == 1) {
177c4762a1bSJed Brown *p1 = fpos * (p[j][i] - p[j][i - 1]) / user->dx + fneg * (p[j][i + 1] - p[j][i]) / user->dx;
178c4762a1bSJed Brown } else if (user->st_width == 2) {
179c4762a1bSJed Brown *p1 = fpos * (3 * p[j][i] - 4 * p[j][i - 1] + p[j][i - 2]) / (2 * user->dx) + fneg * (-p[j][i + 2] + 4 * p[j][i + 1] - 3 * p[j][i]) / (2 * user->dx);
180c4762a1bSJed Brown } else if (user->st_width == 3) {
181c4762a1bSJed Brown *p1 = fpos * (2 * p[j][i + 1] + 3 * p[j][i] - 6 * p[j][i - 1] + p[j][i - 2]) / (6 * user->dx) + fneg * (-p[j][i + 2] + 6 * p[j][i + 1] - 3 * p[j][i] - 2 * p[j][i - 1]) / (6 * user->dx);
182c4762a1bSJed Brown }
183c4762a1bSJed Brown /* *p1 = f*(p[j][i+1] - p[j][i-1])/user->dx;*/
1843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
185c4762a1bSJed Brown }
186c4762a1bSJed Brown
187c4762a1bSJed Brown /* Second advection term */
adv2(PetscScalar ** p,PetscScalar x,PetscScalar y,PetscInt i,PetscInt j,PetscInt N,PetscScalar * p2,AppCtx * user)188d71ae5a4SJacob Faibussowitsch PetscErrorCode adv2(PetscScalar **p, PetscScalar x, PetscScalar y, PetscInt i, PetscInt j, PetscInt N, PetscScalar *p2, AppCtx *user)
189d71ae5a4SJacob Faibussowitsch {
190c4762a1bSJed Brown PetscScalar f, fpos, fneg;
1914d86920dSPierre Jolivet
192c4762a1bSJed Brown PetscFunctionBegin;
193c4762a1bSJed Brown f = (user->ws / (2 * user->H)) * (user->PM_min - user->Pmax * PetscSinScalar(x) - user->D * (y - user->ws));
194c4762a1bSJed Brown fpos = PetscMax(f, 0);
195c4762a1bSJed Brown fneg = PetscMin(f, 0);
196c4762a1bSJed Brown if (user->st_width == 1) {
197c4762a1bSJed Brown *p2 = fpos * (p[j][i] - p[j - 1][i]) / user->dy + fneg * (p[j + 1][i] - p[j][i]) / user->dy;
198c4762a1bSJed Brown } else if (user->st_width == 2) {
199c4762a1bSJed Brown *p2 = fpos * (3 * p[j][i] - 4 * p[j - 1][i] + p[j - 2][i]) / (2 * user->dy) + fneg * (-p[j + 2][i] + 4 * p[j + 1][i] - 3 * p[j][i]) / (2 * user->dy);
200c4762a1bSJed Brown } else if (user->st_width == 3) {
201c4762a1bSJed Brown *p2 = fpos * (2 * p[j + 1][i] + 3 * p[j][i] - 6 * p[j - 1][i] + p[j - 2][i]) / (6 * user->dy) + fneg * (-p[j + 2][i] + 6 * p[j + 1][i] - 3 * p[j][i] - 2 * p[j - 1][i]) / (6 * user->dy);
202c4762a1bSJed Brown }
203c4762a1bSJed Brown
204c4762a1bSJed Brown /* *p2 = f*(p[j+1][i] - p[j-1][i])/user->dy;*/
2053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
206c4762a1bSJed Brown }
207c4762a1bSJed Brown
208c4762a1bSJed Brown /* Diffusion term */
diffuse(PetscScalar ** p,PetscInt i,PetscInt j,PetscReal t,PetscScalar * p_diff,AppCtx * user)209d71ae5a4SJacob Faibussowitsch PetscErrorCode diffuse(PetscScalar **p, PetscInt i, PetscInt j, PetscReal t, PetscScalar *p_diff, AppCtx *user)
210d71ae5a4SJacob Faibussowitsch {
211c4762a1bSJed Brown PetscFunctionBeginUser;
212c4762a1bSJed Brown if (user->st_width == 1) {
213c4762a1bSJed Brown *p_diff = user->disper_coe * ((p[j - 1][i] - 2 * p[j][i] + p[j + 1][i]) / (user->dy * user->dy));
214c4762a1bSJed Brown } else if (user->st_width == 2) {
215c4762a1bSJed Brown *p_diff = user->disper_coe * ((-p[j - 2][i] + 16 * p[j - 1][i] - 30 * p[j][i] + 16 * p[j + 1][i] - p[j + 2][i]) / (12.0 * user->dy * user->dy));
216c4762a1bSJed Brown } else if (user->st_width == 3) {
217c4762a1bSJed Brown *p_diff = user->disper_coe * ((2 * p[j - 3][i] - 27 * p[j - 2][i] + 270 * p[j - 1][i] - 490 * p[j][i] + 270 * p[j + 1][i] - 27 * p[j + 2][i] + 2 * p[j + 3][i]) / (180.0 * user->dy * user->dy));
218c4762a1bSJed Brown }
2193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
220c4762a1bSJed Brown }
221c4762a1bSJed Brown
IFunction(TS ts,PetscReal t,Vec X,Vec Xdot,Vec F,PetscCtx ctx)222*2a8381b2SBarry Smith PetscErrorCode IFunction(TS ts, PetscReal t, Vec X, Vec Xdot, Vec F, PetscCtx ctx)
223d71ae5a4SJacob Faibussowitsch {
224c4762a1bSJed Brown AppCtx *user = (AppCtx *)ctx;
225c4762a1bSJed Brown DM cda;
226c4762a1bSJed Brown DMDACoor2d **coors;
227c4762a1bSJed Brown PetscScalar **p, **f, **pdot;
228c4762a1bSJed Brown PetscInt i, j;
229c4762a1bSJed Brown PetscInt xs, ys, xm, ym, M, N;
230c4762a1bSJed Brown Vec localX, gc, localXdot;
231c4762a1bSJed Brown PetscScalar p_adv1 = 0.0, p_adv2 = 0.0, p_diff = 0;
232c4762a1bSJed Brown PetscScalar diffuse1, gamma;
233c4762a1bSJed Brown
234c4762a1bSJed Brown PetscFunctionBeginUser;
2359566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(user->da, NULL, &M, &N, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL));
2369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(user->da, &cda));
2379566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(cda, &xs, &ys, 0, &xm, &ym, 0));
238c4762a1bSJed Brown
2399566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(user->da, &localX));
2409566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(user->da, &localXdot));
241c4762a1bSJed Brown
2429566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(user->da, X, INSERT_VALUES, localX));
2439566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(user->da, X, INSERT_VALUES, localX));
2449566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(user->da, Xdot, INSERT_VALUES, localXdot));
2459566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(user->da, Xdot, INSERT_VALUES, localXdot));
246c4762a1bSJed Brown
2479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(user->da, &gc));
248c4762a1bSJed Brown
2499566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayRead(cda, gc, &coors));
2509566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayRead(user->da, localX, &p));
2519566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayRead(user->da, localXdot, &pdot));
2529566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArray(user->da, F, &f));
253c4762a1bSJed Brown
254c4762a1bSJed Brown gamma = user->D * user->ws / (2 * user->H);
255c4762a1bSJed Brown diffuse1 = user->lambda * user->lambda * user->q / (user->lambda * gamma + 1) * (1.0 - PetscExpScalar(-t * (gamma + 1.0) / user->lambda));
256c4762a1bSJed Brown user->disper_coe = user->ws * user->ws / (4 * user->H * user->H) * diffuse1;
257c4762a1bSJed Brown
258c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) {
259c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) {
2609566063dSJacob Faibussowitsch PetscCall(adv1(p, coors[j][i].y, i, j, M, &p_adv1, user));
2619566063dSJacob Faibussowitsch PetscCall(adv2(p, coors[j][i].x, coors[j][i].y, i, j, N, &p_adv2, user));
2629566063dSJacob Faibussowitsch PetscCall(diffuse(p, i, j, t, &p_diff, user));
263c4762a1bSJed Brown f[j][i] = -p_adv1 - p_adv2 + p_diff - pdot[j][i];
264c4762a1bSJed Brown }
265c4762a1bSJed Brown }
2669566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayRead(user->da, localX, &p));
2679566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayRead(user->da, localX, &pdot));
2689566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(user->da, &localX));
2699566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(user->da, &localXdot));
2709566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArray(user->da, F, &f));
2719566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayRead(cda, gc, &coors));
2723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
273c4762a1bSJed Brown }
274c4762a1bSJed Brown
IJacobian(TS ts,PetscReal t,Vec X,Vec Xdot,PetscReal a,Mat J,Mat Jpre,PetscCtx ctx)275*2a8381b2SBarry Smith PetscErrorCode IJacobian(TS ts, PetscReal t, Vec X, Vec Xdot, PetscReal a, Mat J, Mat Jpre, PetscCtx ctx)
276d71ae5a4SJacob Faibussowitsch {
277c4762a1bSJed Brown AppCtx *user = (AppCtx *)ctx;
278c4762a1bSJed Brown DM cda;
279c4762a1bSJed Brown DMDACoor2d **coors;
280c4762a1bSJed Brown PetscInt i, j;
281c4762a1bSJed Brown PetscInt xs, ys, xm, ym, M, N;
282c4762a1bSJed Brown Vec gc;
283c4762a1bSJed Brown PetscScalar val[5], xi, yi;
284c4762a1bSJed Brown MatStencil row, col[5];
285c4762a1bSJed Brown PetscScalar c1, c3, c5, c1pos, c1neg, c3pos, c3neg;
286c4762a1bSJed Brown
287c4762a1bSJed Brown PetscFunctionBeginUser;
2889566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(user->da, NULL, &M, &N, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL));
2899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(user->da, &cda));
2909566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(cda, &xs, &ys, 0, &xm, &ym, 0));
291c4762a1bSJed Brown
2929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(user->da, &gc));
2939566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayRead(cda, gc, &coors));
294c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) {
295c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) {
296c4762a1bSJed Brown PetscInt nc = 0;
2979371c9d4SSatish Balay xi = coors[j][i].x;
2989371c9d4SSatish Balay yi = coors[j][i].y;
2999371c9d4SSatish Balay row.i = i;
3009371c9d4SSatish Balay row.j = j;
301c4762a1bSJed Brown c1 = (yi - user->ws) / user->dx;
302c4762a1bSJed Brown c1pos = PetscMax(c1, 0);
303c4762a1bSJed Brown c1neg = PetscMin(c1, 0);
304c4762a1bSJed Brown c3 = (user->ws / (2.0 * user->H)) * (user->PM_min - user->Pmax * PetscSinScalar(xi) - user->D * (yi - user->ws)) / user->dy;
305c4762a1bSJed Brown c3pos = PetscMax(c3, 0);
306c4762a1bSJed Brown c3neg = PetscMin(c3, 0);
307c4762a1bSJed Brown c5 = (PetscPowScalar((user->lambda * user->ws) / (2 * user->H), 2) * user->q * (1.0 - PetscExpScalar(-t / user->lambda))) / (user->dy * user->dy);
3089371c9d4SSatish Balay col[nc].i = i - 1;
3099371c9d4SSatish Balay col[nc].j = j;
3109371c9d4SSatish Balay val[nc++] = c1pos;
3119371c9d4SSatish Balay col[nc].i = i + 1;
3129371c9d4SSatish Balay col[nc].j = j;
3139371c9d4SSatish Balay val[nc++] = -c1neg;
3149371c9d4SSatish Balay col[nc].i = i;
3159371c9d4SSatish Balay col[nc].j = j - 1;
3169371c9d4SSatish Balay val[nc++] = c3pos + c5;
3179371c9d4SSatish Balay col[nc].i = i;
3189371c9d4SSatish Balay col[nc].j = j + 1;
3199371c9d4SSatish Balay val[nc++] = -c3neg + c5;
3209371c9d4SSatish Balay col[nc].i = i;
3219371c9d4SSatish Balay col[nc].j = j;
3229371c9d4SSatish Balay val[nc++] = -c1pos + c1neg - c3pos + c3neg - 2 * c5 - a;
3239566063dSJacob Faibussowitsch PetscCall(MatSetValuesStencil(Jpre, 1, &row, nc, col, val, INSERT_VALUES));
324c4762a1bSJed Brown }
325c4762a1bSJed Brown }
3269566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayRead(cda, gc, &coors));
327c4762a1bSJed Brown
3289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jpre, MAT_FINAL_ASSEMBLY));
3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jpre, MAT_FINAL_ASSEMBLY));
330c4762a1bSJed Brown if (J != Jpre) {
3319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(J, MAT_FINAL_ASSEMBLY));
3329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(J, MAT_FINAL_ASSEMBLY));
333c4762a1bSJed Brown }
3343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
335c4762a1bSJed Brown }
336c4762a1bSJed Brown
Parameter_settings(AppCtx * user)337d71ae5a4SJacob Faibussowitsch PetscErrorCode Parameter_settings(AppCtx *user)
338d71ae5a4SJacob Faibussowitsch {
339c4762a1bSJed Brown PetscBool flg;
340c4762a1bSJed Brown
341c4762a1bSJed Brown PetscFunctionBeginUser;
342c4762a1bSJed Brown /* Set default parameters */
343c4762a1bSJed Brown user->ws = 1.0;
344c4762a1bSJed Brown user->H = 5.0;
345c4762a1bSJed Brown user->D = 0.0;
346c4762a1bSJed Brown user->Pmax = user->Pmax_s = 2.1;
347c4762a1bSJed Brown user->PM_min = 1.0;
348c4762a1bSJed Brown user->lambda = 0.1;
349c4762a1bSJed Brown user->q = 1.0;
350c4762a1bSJed Brown user->mux = PetscAsinScalar(user->PM_min / user->Pmax);
351c4762a1bSJed Brown user->sigmax = 0.1;
352c4762a1bSJed Brown user->sigmay = 0.1;
353c4762a1bSJed Brown user->rho = 0.0;
354c4762a1bSJed Brown user->xmin = -PETSC_PI;
355c4762a1bSJed Brown user->xmax = PETSC_PI;
356c4762a1bSJed Brown user->bx = DM_BOUNDARY_PERIODIC;
357c4762a1bSJed Brown user->by = DM_BOUNDARY_GHOSTED;
358c4762a1bSJed Brown user->tf = user->tcl = -1;
359c4762a1bSJed Brown user->ymin = -2.0;
360c4762a1bSJed Brown user->ymax = 2.0;
361c4762a1bSJed Brown user->st_width = 1;
362c4762a1bSJed Brown
3639566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-ws", &user->ws, &flg));
3649566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-Inertia", &user->H, &flg));
3659566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-D", &user->D, &flg));
3669566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-Pmax", &user->Pmax, &flg));
3679566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-PM_min", &user->PM_min, &flg));
3689566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-lambda", &user->lambda, &flg));
3699566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-q", &user->q, &flg));
3709566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-mux", &user->mux, &flg));
3719566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-muy", &user->muy, &flg));
3725f80ce2aSJacob Faibussowitsch if (flg == 0) user->muy = user->ws;
3739566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-xmin", &user->xmin, &flg));
3749566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-xmax", &user->xmax, &flg));
3759566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-ymin", &user->ymin, &flg));
3769566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, NULL, "-ymax", &user->ymax, &flg));
3779566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, NULL, "-stencil_width", &user->st_width, &flg));
3789566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(NULL, NULL, "-bx", DMBoundaryTypes, (PetscEnum *)&user->bx, &flg));
3799566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(NULL, NULL, "-by", DMBoundaryTypes, (PetscEnum *)&user->by, &flg));
3809566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, NULL, "-tf", &user->tf, &flg));
3819566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, NULL, "-tcl", &user->tcl, &flg));
3823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
383c4762a1bSJed Brown }
384c4762a1bSJed Brown
385c4762a1bSJed Brown /*TEST
386c4762a1bSJed Brown
387c4762a1bSJed Brown build:
388c4762a1bSJed Brown requires: !complex x
389c4762a1bSJed Brown
390c4762a1bSJed Brown test:
391c4762a1bSJed Brown args: -ts_max_steps 1
392c4762a1bSJed Brown localrunfiles: petscopt_ex8
393c4762a1bSJed Brown timeoutfactor: 3
394c4762a1bSJed Brown
395c4762a1bSJed Brown TEST*/
396