1 /* 2 The memory scalable AO application ordering routines. These store the 3 orderings on each process for that process' range of values, this is more memory-efficient than `AOBASIC` 4 */ 5 6 #include <../src/vec/is/ao/aoimpl.h> /*I "petscao.h" I*/ 7 8 typedef struct { 9 PetscInt *app_loc; /* app_loc[i] is the partner for the ith local PETSc slot */ 10 PetscInt *petsc_loc; /* petsc_loc[j] is the partner for the jth local app slot */ 11 PetscLayout map; /* determines the local sizes of ao */ 12 } AO_MemoryScalable; 13 14 /* 15 All processors ship the data to process 0 to be printed; note that this is not scalable because 16 process 0 allocates space for all the orderings entry across all the processes 17 */ 18 static PetscErrorCode AOView_MemoryScalable(AO ao, PetscViewer viewer) 19 { 20 PetscMPIInt rank, size; 21 AO_MemoryScalable *aomems = (AO_MemoryScalable *)ao->data; 22 PetscBool iascii; 23 PetscMPIInt tag_app, tag_petsc; 24 PetscLayout map = aomems->map; 25 PetscInt *app, *app_loc, *petsc, *petsc_loc, len, j; 26 MPI_Status status; 27 28 PetscFunctionBegin; 29 PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 30 PetscCheck(iascii, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not supported for AO MemoryScalable", ((PetscObject)viewer)->type_name); 31 32 PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)ao), &rank)); 33 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)ao), &size)); 34 35 PetscCall(PetscObjectGetNewTag((PetscObject)ao, &tag_app)); 36 PetscCall(PetscObjectGetNewTag((PetscObject)ao, &tag_petsc)); 37 38 if (rank == 0) { 39 PetscCall(PetscViewerASCIIPrintf(viewer, "Number of elements in ordering %" PetscInt_FMT "\n", ao->N)); 40 PetscCall(PetscViewerASCIIPrintf(viewer, "PETSc->App App->PETSc\n")); 41 42 PetscCall(PetscMalloc2(map->N, &app, map->N, &petsc)); 43 len = map->n; 44 /* print local AO */ 45 PetscCall(PetscViewerASCIIPrintf(viewer, "Process [%d]\n", rank)); 46 for (PetscInt i = 0; i < len; i++) PetscCall(PetscViewerASCIIPrintf(viewer, "%3" PetscInt_FMT " %3" PetscInt_FMT " %3" PetscInt_FMT " %3" PetscInt_FMT "\n", i, aomems->app_loc[i], i, aomems->petsc_loc[i])); 47 48 /* recv and print off-processor's AO */ 49 for (PetscMPIInt i = 1; i < size; i++) { 50 len = map->range[i + 1] - map->range[i]; 51 app_loc = app + map->range[i]; 52 petsc_loc = petsc + map->range[i]; 53 PetscCallMPI(MPIU_Recv(app_loc, len, MPIU_INT, i, tag_app, PetscObjectComm((PetscObject)ao), &status)); 54 PetscCallMPI(MPIU_Recv(petsc_loc, len, MPIU_INT, i, tag_petsc, PetscObjectComm((PetscObject)ao), &status)); 55 PetscCall(PetscViewerASCIIPrintf(viewer, "Process [%d]\n", i)); 56 for (j = 0; j < len; j++) PetscCall(PetscViewerASCIIPrintf(viewer, "%3" PetscInt_FMT " %3" PetscInt_FMT " %3" PetscInt_FMT " %3" PetscInt_FMT "\n", map->range[i] + j, app_loc[j], map->range[i] + j, petsc_loc[j])); 57 } 58 PetscCall(PetscFree2(app, petsc)); 59 60 } else { 61 /* send values */ 62 PetscCallMPI(MPIU_Send((void *)aomems->app_loc, map->n, MPIU_INT, 0, tag_app, PetscObjectComm((PetscObject)ao))); 63 PetscCallMPI(MPIU_Send((void *)aomems->petsc_loc, map->n, MPIU_INT, 0, tag_petsc, PetscObjectComm((PetscObject)ao))); 64 } 65 PetscCall(PetscViewerFlush(viewer)); 66 PetscFunctionReturn(PETSC_SUCCESS); 67 } 68 69 static PetscErrorCode AODestroy_MemoryScalable(AO ao) 70 { 71 AO_MemoryScalable *aomems = (AO_MemoryScalable *)ao->data; 72 73 PetscFunctionBegin; 74 PetscCall(PetscFree2(aomems->app_loc, aomems->petsc_loc)); 75 PetscCall(PetscLayoutDestroy(&aomems->map)); 76 PetscCall(PetscFree(aomems)); 77 PetscFunctionReturn(PETSC_SUCCESS); 78 } 79 80 /* 81 Input Parameters: 82 + ao - the application ordering context 83 . n - the number of integers in ia[] 84 . ia - the integers; these are replaced with their mapped value 85 - maploc - app_loc or petsc_loc in struct "AO_MemoryScalable" 86 87 Output Parameter: 88 . ia - the mapped interges 89 */ 90 static PetscErrorCode AOMap_MemoryScalable_private(AO ao, PetscInt n, PetscInt *ia, const PetscInt *maploc) 91 { 92 AO_MemoryScalable *aomems = (AO_MemoryScalable *)ao->data; 93 MPI_Comm comm; 94 PetscMPIInt rank, size, tag1, tag2, count; 95 PetscMPIInt *owner, j; 96 PetscInt nmax, *sindices, *rindices, idx, lastidx, *sindices2, *rindices2, *sizes, *start; 97 PetscMPIInt nreceives, nsends; 98 const PetscInt *owners = aomems->map->range; 99 MPI_Request *send_waits, *recv_waits, *send_waits2, *recv_waits2; 100 MPI_Status recv_status; 101 PetscMPIInt source, widx; 102 PetscCount nindices; 103 PetscInt *rbuf, *sbuf, inreceives; 104 MPI_Status *send_status, *send_status2; 105 106 PetscFunctionBegin; 107 PetscCall(PetscObjectGetComm((PetscObject)ao, &comm)); 108 PetscCallMPI(MPI_Comm_rank(comm, &rank)); 109 PetscCallMPI(MPI_Comm_size(comm, &size)); 110 111 /* first count number of contributors to each processor */ 112 PetscCall(PetscMalloc1(size, &start)); 113 PetscCall(PetscCalloc2(2 * size, &sizes, n, &owner)); 114 115 j = 0; 116 lastidx = -1; 117 for (PetscInt i = 0; i < n; i++) { 118 if (ia[i] < 0) owner[i] = -1; /* mark negative entries (which are not to be mapped) with a special negative value */ 119 if (ia[i] >= ao->N) owner[i] = -2; /* mark out of range entries with special negative value */ 120 else { 121 /* if indices are NOT locally sorted, need to start search at the beginning */ 122 if (lastidx > (idx = ia[i])) j = 0; 123 lastidx = idx; 124 for (; j < size; j++) { 125 if (idx >= owners[j] && idx < owners[j + 1]) { 126 sizes[2 * j]++; /* num of indices to be sent */ 127 sizes[2 * j + 1] = 1; /* send to proc[j] */ 128 owner[i] = j; 129 break; 130 } 131 } 132 } 133 } 134 sizes[2 * rank] = sizes[2 * rank + 1] = 0; /* do not receive from self! */ 135 nsends = 0; 136 for (PetscMPIInt i = 0; i < size; i++) nsends += sizes[2 * i + 1]; 137 138 /* inform other processors of number of messages and max length*/ 139 PetscCall(PetscMaxSum(comm, sizes, &nmax, &inreceives)); 140 PetscCall(PetscMPIIntCast(inreceives, &nreceives)); 141 142 /* allocate arrays */ 143 PetscCall(PetscObjectGetNewTag((PetscObject)ao, &tag1)); 144 PetscCall(PetscObjectGetNewTag((PetscObject)ao, &tag2)); 145 146 PetscCall(PetscMalloc2(nreceives * nmax, &rindices, nreceives, &recv_waits)); 147 PetscCall(PetscMalloc2(nsends * nmax, &rindices2, nsends, &recv_waits2)); 148 149 PetscCall(PetscMalloc3(n, &sindices, nsends, &send_waits, nsends, &send_status)); 150 PetscCall(PetscMalloc3(n, &sindices2, nreceives, &send_waits2, nreceives, &send_status2)); 151 152 /* post 1st receives: receive others requests 153 since we don't know how long each individual message is we 154 allocate the largest needed buffer for each receive. Potentially 155 this is a lot of wasted space. 156 */ 157 for (PetscMPIInt i = 0; i < nreceives; i++) PetscCallMPI(MPIU_Irecv(rindices + nmax * i, nmax, MPIU_INT, MPI_ANY_SOURCE, tag1, comm, recv_waits + i)); 158 159 /* do 1st sends: 160 1) starts[i] gives the starting index in svalues for stuff going to 161 the ith processor 162 */ 163 start[0] = 0; 164 for (PetscMPIInt i = 1; i < size; i++) start[i] = start[i - 1] + sizes[2 * i - 2]; 165 for (PetscInt i = 0; i < n; i++) { 166 j = owner[i]; 167 if (j == -1) continue; /* do not remap negative entries in ia[] */ 168 else if (j == -2) { /* out of range entries get mapped to -1 */ ia[i] = -1; 169 continue; 170 } else if (j != rank) { 171 sindices[start[j]++] = ia[i]; 172 } else { /* compute my own map */ 173 ia[i] = maploc[ia[i] - owners[rank]]; 174 } 175 } 176 177 start[0] = 0; 178 for (PetscMPIInt i = 1; i < size; i++) start[i] = start[i - 1] + sizes[2 * i - 2]; 179 count = 0; 180 for (PetscMPIInt i = 0; i < size; i++) { 181 if (sizes[2 * i + 1]) { 182 /* send my request to others */ 183 PetscCallMPI(MPIU_Isend(sindices + start[i], sizes[2 * i], MPIU_INT, i, tag1, comm, send_waits + count)); 184 /* post receive for the answer of my request */ 185 PetscCallMPI(MPIU_Irecv(sindices2 + start[i], sizes[2 * i], MPIU_INT, i, tag2, comm, recv_waits2 + count)); 186 count++; 187 } 188 } 189 PetscCheck(nsends == count, comm, PETSC_ERR_SUP, "nsends %d != count %d", nsends, count); 190 191 /* wait on 1st sends */ 192 if (nsends) PetscCallMPI(MPI_Waitall((PetscMPIInt)nsends, send_waits, send_status)); 193 194 /* 1st recvs: other's requests */ 195 for (j = 0; j < nreceives; j++) { 196 PetscCallMPI(MPI_Waitany((PetscMPIInt)nreceives, recv_waits, &widx, &recv_status)); /* idx: index of handle for operation that completed */ 197 PetscCallMPI(MPIU_Get_count(&recv_status, MPIU_INT, &nindices)); 198 rbuf = rindices + nmax * widx; /* global index */ 199 source = recv_status.MPI_SOURCE; 200 201 /* compute mapping */ 202 sbuf = rbuf; 203 for (PetscCount i = 0; i < nindices; i++) sbuf[i] = maploc[rbuf[i] - owners[rank]]; 204 205 /* send mapping back to the sender */ 206 PetscCallMPI(MPIU_Isend(sbuf, nindices, MPIU_INT, source, tag2, comm, send_waits2 + widx)); 207 } 208 209 /* wait on 2nd sends */ 210 if (nreceives) PetscCallMPI(MPI_Waitall((PetscMPIInt)nreceives, send_waits2, send_status2)); 211 212 /* 2nd recvs: for the answer of my request */ 213 for (j = 0; j < nsends; j++) { 214 PetscCallMPI(MPI_Waitany((PetscMPIInt)nsends, recv_waits2, &widx, &recv_status)); 215 PetscCallMPI(MPIU_Get_count(&recv_status, MPIU_INT, &nindices)); 216 source = recv_status.MPI_SOURCE; 217 /* pack output ia[] */ 218 rbuf = sindices2 + start[source]; 219 count = 0; 220 for (PetscCount i = 0; i < n; i++) { 221 if (source == owner[i]) ia[i] = rbuf[count++]; 222 } 223 } 224 225 /* free arrays */ 226 PetscCall(PetscFree(start)); 227 PetscCall(PetscFree2(sizes, owner)); 228 PetscCall(PetscFree2(rindices, recv_waits)); 229 PetscCall(PetscFree2(rindices2, recv_waits2)); 230 PetscCall(PetscFree3(sindices, send_waits, send_status)); 231 PetscCall(PetscFree3(sindices2, send_waits2, send_status2)); 232 PetscFunctionReturn(PETSC_SUCCESS); 233 } 234 235 static PetscErrorCode AOPetscToApplication_MemoryScalable(AO ao, PetscInt n, PetscInt *ia) 236 { 237 AO_MemoryScalable *aomems = (AO_MemoryScalable *)ao->data; 238 PetscInt *app_loc = aomems->app_loc; 239 240 PetscFunctionBegin; 241 PetscCall(AOMap_MemoryScalable_private(ao, n, ia, app_loc)); 242 PetscFunctionReturn(PETSC_SUCCESS); 243 } 244 245 static PetscErrorCode AOApplicationToPetsc_MemoryScalable(AO ao, PetscInt n, PetscInt *ia) 246 { 247 AO_MemoryScalable *aomems = (AO_MemoryScalable *)ao->data; 248 PetscInt *petsc_loc = aomems->petsc_loc; 249 250 PetscFunctionBegin; 251 PetscCall(AOMap_MemoryScalable_private(ao, n, ia, petsc_loc)); 252 PetscFunctionReturn(PETSC_SUCCESS); 253 } 254 255 static const struct _AOOps AOOps_MemoryScalable = { 256 PetscDesignatedInitializer(view, AOView_MemoryScalable), 257 PetscDesignatedInitializer(destroy, AODestroy_MemoryScalable), 258 PetscDesignatedInitializer(petsctoapplication, AOPetscToApplication_MemoryScalable), 259 PetscDesignatedInitializer(applicationtopetsc, AOApplicationToPetsc_MemoryScalable), 260 PetscDesignatedInitializer(petsctoapplicationpermuteint, NULL), 261 PetscDesignatedInitializer(applicationtopetscpermuteint, NULL), 262 PetscDesignatedInitializer(petsctoapplicationpermutereal, NULL), 263 PetscDesignatedInitializer(applicationtopetscpermutereal, NULL), 264 }; 265 266 static PetscErrorCode AOCreateMemoryScalable_private(MPI_Comm comm, PetscInt napp, const PetscInt from_array[], const PetscInt to_array[], AO ao, PetscInt *aomap_loc) 267 { 268 AO_MemoryScalable *aomems = (AO_MemoryScalable *)ao->data; 269 PetscLayout map = aomems->map; 270 PetscInt n_local = map->n, i, j; 271 PetscMPIInt rank, size, tag; 272 PetscInt *owner, *start, *sizes, nsends, nreceives; 273 PetscInt nmax, count, *sindices, *rindices, idx, lastidx; 274 PetscInt *owners = aomems->map->range; 275 MPI_Request *send_waits, *recv_waits; 276 MPI_Status recv_status; 277 PetscMPIInt widx; 278 PetscInt *rbuf; 279 PetscInt n = napp, ip, ia; 280 MPI_Status *send_status; 281 PetscCount nindices; 282 283 PetscFunctionBegin; 284 PetscCall(PetscArrayzero(aomap_loc, n_local)); 285 286 PetscCallMPI(MPI_Comm_rank(comm, &rank)); 287 PetscCallMPI(MPI_Comm_size(comm, &size)); 288 289 /* first count number of contributors (of from_array[]) to each processor */ 290 PetscCall(PetscCalloc1(2 * size, &sizes)); 291 PetscCall(PetscMalloc1(n, &owner)); 292 293 j = 0; 294 lastidx = -1; 295 for (i = 0; i < n; i++) { 296 /* if indices are NOT locally sorted, need to start search at the beginning */ 297 if (lastidx > (idx = from_array[i])) j = 0; 298 lastidx = idx; 299 for (; j < size; j++) { 300 if (idx >= owners[j] && idx < owners[j + 1]) { 301 sizes[2 * j] += 2; /* num of indices to be sent - in pairs (ip,ia) */ 302 sizes[2 * j + 1] = 1; /* send to proc[j] */ 303 owner[i] = j; 304 break; 305 } 306 } 307 } 308 sizes[2 * rank] = sizes[2 * rank + 1] = 0; /* do not receive from self! */ 309 nsends = 0; 310 for (i = 0; i < size; i++) nsends += sizes[2 * i + 1]; 311 312 /* inform other processors of number of messages and max length*/ 313 PetscCall(PetscMaxSum(comm, sizes, &nmax, &nreceives)); 314 315 /* allocate arrays */ 316 PetscCall(PetscObjectGetNewTag((PetscObject)ao, &tag)); 317 PetscCall(PetscMalloc2(nreceives * nmax, &rindices, nreceives, &recv_waits)); 318 PetscCall(PetscMalloc3(2 * n, &sindices, nsends, &send_waits, nsends, &send_status)); 319 PetscCall(PetscMalloc1(size, &start)); 320 321 /* post receives: */ 322 for (i = 0; i < nreceives; i++) PetscCallMPI(MPIU_Irecv(rindices + nmax * i, nmax, MPIU_INT, MPI_ANY_SOURCE, tag, comm, recv_waits + i)); 323 324 /* do sends: 325 1) starts[i] gives the starting index in svalues for stuff going to 326 the ith processor 327 */ 328 start[0] = 0; 329 for (i = 1; i < size; i++) start[i] = start[i - 1] + sizes[2 * i - 2]; 330 for (i = 0; i < n; i++) { 331 j = owner[i]; 332 if (j != rank) { 333 ip = from_array[i]; 334 ia = to_array[i]; 335 sindices[start[j]++] = ip; 336 sindices[start[j]++] = ia; 337 } else { /* compute my own map */ 338 ip = from_array[i] - owners[rank]; 339 ia = to_array[i]; 340 aomap_loc[ip] = ia; 341 } 342 } 343 344 start[0] = 0; 345 for (PetscMPIInt i = 1; i < size; i++) start[i] = start[i - 1] + sizes[2 * i - 2]; 346 count = 0; 347 for (PetscMPIInt i = 0; i < size; i++) { 348 if (sizes[2 * i + 1]) { 349 PetscCallMPI(MPIU_Isend(sindices + start[i], sizes[2 * i], MPIU_INT, i, tag, comm, send_waits + count)); 350 count++; 351 } 352 } 353 PetscCheck(nsends == count, comm, PETSC_ERR_SUP, "nsends %" PetscInt_FMT " != count %" PetscInt_FMT, nsends, count); 354 355 /* wait on sends */ 356 if (nsends) PetscCallMPI(MPI_Waitall((PetscMPIInt)nsends, send_waits, send_status)); 357 358 /* recvs */ 359 count = 0; 360 for (j = nreceives; j > 0; j--) { 361 PetscCallMPI(MPI_Waitany((PetscMPIInt)nreceives, recv_waits, &widx, &recv_status)); 362 PetscCallMPI(MPIU_Get_count(&recv_status, MPIU_INT, &nindices)); 363 rbuf = rindices + nmax * widx; /* global index */ 364 365 /* compute local mapping */ 366 for (i = 0; i < nindices; i += 2) { /* pack aomap_loc */ 367 ip = rbuf[i] - owners[rank]; /* local index */ 368 ia = rbuf[i + 1]; 369 aomap_loc[ip] = ia; 370 } 371 count++; 372 } 373 374 PetscCall(PetscFree(start)); 375 PetscCall(PetscFree3(sindices, send_waits, send_status)); 376 PetscCall(PetscFree2(rindices, recv_waits)); 377 PetscCall(PetscFree(owner)); 378 PetscCall(PetscFree(sizes)); 379 PetscFunctionReturn(PETSC_SUCCESS); 380 } 381 382 PETSC_INTERN PetscErrorCode AOCreate_MemoryScalable(AO ao) 383 { 384 IS isapp = ao->isapp, ispetsc = ao->ispetsc; 385 const PetscInt *mypetsc, *myapp; 386 PetscInt napp, n_local, N, i, start, *petsc, *lens, *disp; 387 MPI_Comm comm; 388 AO_MemoryScalable *aomems; 389 PetscLayout map; 390 PetscMPIInt size, rank; 391 392 PetscFunctionBegin; 393 PetscCheck(isapp, PetscObjectComm((PetscObject)ao), PETSC_ERR_ARG_WRONGSTATE, "AOSetIS() must be called before AOSetType()"); 394 /* create special struct aomems */ 395 PetscCall(PetscNew(&aomems)); 396 ao->data = (void *)aomems; 397 ao->ops[0] = AOOps_MemoryScalable; 398 PetscCall(PetscObjectChangeTypeName((PetscObject)ao, AOMEMORYSCALABLE)); 399 400 /* transmit all local lengths of isapp to all processors */ 401 PetscCall(PetscObjectGetComm((PetscObject)isapp, &comm)); 402 PetscCallMPI(MPI_Comm_size(comm, &size)); 403 PetscCallMPI(MPI_Comm_rank(comm, &rank)); 404 PetscCall(PetscMalloc2(size, &lens, size, &disp)); 405 PetscCall(ISGetLocalSize(isapp, &napp)); 406 PetscCallMPI(MPI_Allgather(&napp, 1, MPIU_INT, lens, 1, MPIU_INT, comm)); 407 408 N = 0; 409 for (i = 0; i < size; i++) { 410 disp[i] = N; 411 N += lens[i]; 412 } 413 414 /* If ispetsc is 0 then use "natural" numbering */ 415 if (napp) { 416 if (!ispetsc) { 417 start = disp[rank]; 418 PetscCall(PetscMalloc1(napp + 1, &petsc)); 419 for (i = 0; i < napp; i++) petsc[i] = start + i; 420 } else { 421 PetscCall(ISGetIndices(ispetsc, &mypetsc)); 422 petsc = (PetscInt *)mypetsc; 423 } 424 } else { 425 petsc = NULL; 426 } 427 428 /* create a map with global size N - used to determine the local sizes of ao - shall we use local napp instead of N? */ 429 PetscCall(PetscLayoutCreate(comm, &map)); 430 map->bs = 1; 431 map->N = N; 432 PetscCall(PetscLayoutSetUp(map)); 433 434 ao->N = N; 435 ao->n = map->n; 436 aomems->map = map; 437 438 /* create distributed indices app_loc: petsc->app and petsc_loc: app->petsc */ 439 n_local = map->n; 440 PetscCall(PetscCalloc2(n_local, &aomems->app_loc, n_local, &aomems->petsc_loc)); 441 PetscCall(ISGetIndices(isapp, &myapp)); 442 443 PetscCall(AOCreateMemoryScalable_private(comm, napp, petsc, myapp, ao, aomems->app_loc)); 444 PetscCall(AOCreateMemoryScalable_private(comm, napp, myapp, petsc, ao, aomems->petsc_loc)); 445 446 PetscCall(ISRestoreIndices(isapp, &myapp)); 447 if (napp) { 448 if (ispetsc) { 449 PetscCall(ISRestoreIndices(ispetsc, &mypetsc)); 450 } else { 451 PetscCall(PetscFree(petsc)); 452 } 453 } 454 PetscCall(PetscFree2(lens, disp)); 455 PetscFunctionReturn(PETSC_SUCCESS); 456 } 457 458 /*@ 459 AOCreateMemoryScalable - Creates a memory scalable application ordering using two integer arrays. 460 461 Collective 462 463 Input Parameters: 464 + comm - MPI communicator that is to share the `AO` 465 . napp - size of `myapp` and `mypetsc` 466 . myapp - integer array that defines an ordering 467 - mypetsc - integer array that defines another ordering (may be `NULL` to indicate the natural ordering, that is 0,1,2,3,...) 468 469 Output Parameter: 470 . aoout - the new application ordering 471 472 Level: beginner 473 474 Note: 475 The arrays `myapp` and `mypetsc` must contain the all the integers 0 to `napp`-1 with no duplicates; that is there cannot be any "holes" 476 in the indices. Use `AOCreateMapping()` or `AOCreateMappingIS()` if you wish to have "holes" in the indices. 477 Comparing with `AOCreateBasic()`, this routine trades memory with message communication. 478 479 .seealso: [](sec_ao), [](sec_scatter), `AO`, `AOCreateMemoryScalableIS()`, `AODestroy()`, `AOPetscToApplication()`, `AOApplicationToPetsc()` 480 @*/ 481 PetscErrorCode AOCreateMemoryScalable(MPI_Comm comm, PetscInt napp, const PetscInt myapp[], const PetscInt mypetsc[], AO *aoout) 482 { 483 IS isapp, ispetsc; 484 const PetscInt *app = myapp, *petsc = mypetsc; 485 486 PetscFunctionBegin; 487 PetscCall(ISCreateGeneral(comm, napp, app, PETSC_USE_POINTER, &isapp)); 488 if (mypetsc) { 489 PetscCall(ISCreateGeneral(comm, napp, petsc, PETSC_USE_POINTER, &ispetsc)); 490 } else { 491 ispetsc = NULL; 492 } 493 PetscCall(AOCreateMemoryScalableIS(isapp, ispetsc, aoout)); 494 PetscCall(ISDestroy(&isapp)); 495 if (mypetsc) PetscCall(ISDestroy(&ispetsc)); 496 PetscFunctionReturn(PETSC_SUCCESS); 497 } 498 499 /*@ 500 AOCreateMemoryScalableIS - Creates a memory scalable application ordering using two index sets. 501 502 Collective 503 504 Input Parameters: 505 + isapp - index set that defines an ordering 506 - ispetsc - index set that defines another ordering (may be `NULL` to use the natural ordering) 507 508 Output Parameter: 509 . aoout - the new application ordering 510 511 Level: beginner 512 513 Notes: 514 The index sets `isapp` and `ispetsc` must contain the all the integers 0 to napp-1 (where napp is the length of the index sets) with no duplicates; 515 that is there cannot be any "holes". 516 517 Comparing with `AOCreateBasicIS()`, this routine trades memory with message communication. 518 519 .seealso: [](sec_ao), [](sec_scatter), `AO`, `AOCreateBasicIS()`, `AOCreateMemoryScalable()`, `AODestroy()` 520 @*/ 521 PetscErrorCode AOCreateMemoryScalableIS(IS isapp, IS ispetsc, AO *aoout) 522 { 523 MPI_Comm comm; 524 AO ao; 525 526 PetscFunctionBegin; 527 PetscCall(PetscObjectGetComm((PetscObject)isapp, &comm)); 528 PetscCall(AOCreate(comm, &ao)); 529 PetscCall(AOSetIS(ao, isapp, ispetsc)); 530 PetscCall(AOSetType(ao, AOMEMORYSCALABLE)); 531 PetscCall(AOViewFromOptions(ao, NULL, "-ao_view")); 532 *aoout = ao; 533 PetscFunctionReturn(PETSC_SUCCESS); 534 } 535