1ea844a1aSMatthew Knepley /* 2ea844a1aSMatthew Knepley This file contains routines for basic section object implementation. 3ea844a1aSMatthew Knepley */ 4ea844a1aSMatthew Knepley 5ea844a1aSMatthew Knepley #include <petsc/private/sectionimpl.h> /*I "petscsection.h" I*/ 6ea844a1aSMatthew Knepley #include <petscsf.h> 7ea844a1aSMatthew Knepley 8ea844a1aSMatthew Knepley PetscClassId PETSC_SECTION_CLASSID; 9ea844a1aSMatthew Knepley 10ea844a1aSMatthew Knepley /*@ 11cab54364SBarry Smith PetscSectionCreate - Allocates `PetscSection` and sets the map contents to the default. 12ea844a1aSMatthew Knepley 13ea844a1aSMatthew Knepley Collective 14ea844a1aSMatthew Knepley 15ea844a1aSMatthew Knepley Input Parameters: 16ea844a1aSMatthew Knepley + comm - the MPI communicator 17ea844a1aSMatthew Knepley - s - pointer to the section 18ea844a1aSMatthew Knepley 19ea844a1aSMatthew Knepley Level: beginner 20ea844a1aSMatthew Knepley 21ea844a1aSMatthew Knepley Notes: 22ea844a1aSMatthew Knepley Typical calling sequence 23cab54364SBarry Smith .vb 24cab54364SBarry Smith PetscSectionCreate(MPI_Comm,PetscSection *);! 25cab54364SBarry Smith PetscSectionSetNumFields(PetscSection, numFields); 26cab54364SBarry Smith PetscSectionSetChart(PetscSection,low,high); 27cab54364SBarry Smith PetscSectionSetDof(PetscSection,point,numdof); 28cab54364SBarry Smith PetscSectionSetUp(PetscSection); 29cab54364SBarry Smith PetscSectionGetOffset(PetscSection,point,PetscInt *); 30cab54364SBarry Smith PetscSectionDestroy(PetscSection); 31cab54364SBarry Smith .ve 32ea844a1aSMatthew Knepley 33cab54364SBarry Smith The `PetscSection` object and methods are intended to be used in the PETSc `Vec` and `Mat` implementations. 34ea844a1aSMatthew Knepley 35cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionDestroy()` 36ea844a1aSMatthew Knepley @*/ 37d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreate(MPI_Comm comm, PetscSection *s) 38d71ae5a4SJacob Faibussowitsch { 39ea844a1aSMatthew Knepley PetscFunctionBegin; 40ea844a1aSMatthew Knepley PetscValidPointer(s, 2); 419566063dSJacob Faibussowitsch PetscCall(ISInitializePackage()); 42ea844a1aSMatthew Knepley 439566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(*s, PETSC_SECTION_CLASSID, "PetscSection", "Section", "IS", comm, PetscSectionDestroy, PetscSectionView)); 44ea844a1aSMatthew Knepley 45ea844a1aSMatthew Knepley (*s)->pStart = -1; 46ea844a1aSMatthew Knepley (*s)->pEnd = -1; 47ea844a1aSMatthew Knepley (*s)->perm = NULL; 48ea844a1aSMatthew Knepley (*s)->pointMajor = PETSC_TRUE; 4987e637c6Sksagiyam (*s)->includesConstraints = PETSC_TRUE; 50ea844a1aSMatthew Knepley (*s)->atlasDof = NULL; 51ea844a1aSMatthew Knepley (*s)->atlasOff = NULL; 52ea844a1aSMatthew Knepley (*s)->bc = NULL; 53ea844a1aSMatthew Knepley (*s)->bcIndices = NULL; 54ea844a1aSMatthew Knepley (*s)->setup = PETSC_FALSE; 55ea844a1aSMatthew Knepley (*s)->numFields = 0; 56ea844a1aSMatthew Knepley (*s)->fieldNames = NULL; 57ea844a1aSMatthew Knepley (*s)->field = NULL; 58ea844a1aSMatthew Knepley (*s)->useFieldOff = PETSC_FALSE; 59b778fa18SValeria Barra (*s)->compNames = NULL; 60ea844a1aSMatthew Knepley (*s)->clObj = NULL; 61c459fbc1SJed Brown (*s)->clHash = NULL; 62ea844a1aSMatthew Knepley (*s)->clSection = NULL; 63ea844a1aSMatthew Knepley (*s)->clPoints = NULL; 6469c11d05SVaclav Hapla PetscCall(PetscSectionInvalidateMaxDof_Internal(*s)); 65ea844a1aSMatthew Knepley PetscFunctionReturn(0); 66ea844a1aSMatthew Knepley } 67ea844a1aSMatthew Knepley 68ea844a1aSMatthew Knepley /*@ 69cab54364SBarry Smith PetscSectionCopy - Creates a shallow (if possible) copy of the `PetscSection` 70ea844a1aSMatthew Knepley 71ea844a1aSMatthew Knepley Collective 72ea844a1aSMatthew Knepley 73ea844a1aSMatthew Knepley Input Parameter: 74cab54364SBarry Smith . section - the `PetscSection` 75ea844a1aSMatthew Knepley 76ea844a1aSMatthew Knepley Output Parameter: 77ea844a1aSMatthew Knepley . newSection - the copy 78ea844a1aSMatthew Knepley 79ea844a1aSMatthew Knepley Level: intermediate 80ea844a1aSMatthew Knepley 81cab54364SBarry Smith Developer Note: 82cab54364SBarry Smith What exactly does shallow mean in this context? 83cab54364SBarry Smith 84cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()` 85ea844a1aSMatthew Knepley @*/ 86d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCopy(PetscSection section, PetscSection newSection) 87d71ae5a4SJacob Faibussowitsch { 88ea844a1aSMatthew Knepley PetscSectionSym sym; 89ea844a1aSMatthew Knepley IS perm; 90b778fa18SValeria Barra PetscInt numFields, f, c, pStart, pEnd, p; 91ea844a1aSMatthew Knepley 92ea844a1aSMatthew Knepley PetscFunctionBegin; 93ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 94ea844a1aSMatthew Knepley PetscValidHeaderSpecific(newSection, PETSC_SECTION_CLASSID, 2); 959566063dSJacob Faibussowitsch PetscCall(PetscSectionReset(newSection)); 969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 979566063dSJacob Faibussowitsch if (numFields) PetscCall(PetscSectionSetNumFields(newSection, numFields)); 98ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 99b778fa18SValeria Barra const char *fieldName = NULL, *compName = NULL; 100ea844a1aSMatthew Knepley PetscInt numComp = 0; 101ea844a1aSMatthew Knepley 1029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldName(newSection, f, fieldName)); 1049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &numComp)); 1059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newSection, f, numComp)); 106b778fa18SValeria Barra for (c = 0; c < numComp; ++c) { 1079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetComponentName(section, f, c, &compName)); 1089566063dSJacob Faibussowitsch PetscCall(PetscSectionSetComponentName(newSection, f, c, compName)); 109b778fa18SValeria Barra } 1109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldSym(section, f, &sym)); 1119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldSym(newSection, f, sym)); 112ea844a1aSMatthew Knepley } 1139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 1149566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newSection, pStart, pEnd)); 1159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPermutation(section, &perm)); 1169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetPermutation(newSection, perm)); 1179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetSym(section, &sym)); 1189566063dSJacob Faibussowitsch PetscCall(PetscSectionSetSym(newSection, sym)); 119ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 120ea844a1aSMatthew Knepley PetscInt dof, cdof, fcdof = 0; 121ea844a1aSMatthew Knepley 1229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 1239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, p, dof)); 1249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 1259566063dSJacob Faibussowitsch if (cdof) PetscCall(PetscSectionSetConstraintDof(newSection, p, cdof)); 126ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 1279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &dof)); 1289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, p, f, dof)); 129ea844a1aSMatthew Knepley if (cdof) { 1309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1319566063dSJacob Faibussowitsch if (fcdof) PetscCall(PetscSectionSetFieldConstraintDof(newSection, p, f, fcdof)); 132ea844a1aSMatthew Knepley } 133ea844a1aSMatthew Knepley } 134ea844a1aSMatthew Knepley } 1359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newSection)); 136ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 137ea844a1aSMatthew Knepley PetscInt off, cdof, fcdof = 0; 138ea844a1aSMatthew Knepley const PetscInt *cInd; 139ea844a1aSMatthew Knepley 140ea844a1aSMatthew Knepley /* Must set offsets in case they do not agree with the prefix sums */ 1419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, p, &off)); 1429566063dSJacob Faibussowitsch PetscCall(PetscSectionSetOffset(newSection, p, off)); 1439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 144ea844a1aSMatthew Knepley if (cdof) { 1459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cInd)); 1469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintIndices(newSection, p, cInd)); 147ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 1489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 149ea844a1aSMatthew Knepley if (fcdof) { 1509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, p, f, &cInd)); 1519566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldConstraintIndices(newSection, p, f, cInd)); 152ea844a1aSMatthew Knepley } 153ea844a1aSMatthew Knepley } 154ea844a1aSMatthew Knepley } 155ea844a1aSMatthew Knepley } 156ea844a1aSMatthew Knepley PetscFunctionReturn(0); 157ea844a1aSMatthew Knepley } 158ea844a1aSMatthew Knepley 159ea844a1aSMatthew Knepley /*@ 160cab54364SBarry Smith PetscSectionClone - Creates a shallow (if possible) copy of the `PetscSection` 161ea844a1aSMatthew Knepley 162ea844a1aSMatthew Knepley Collective 163ea844a1aSMatthew Knepley 164ea844a1aSMatthew Knepley Input Parameter: 165cab54364SBarry Smith . section - the `PetscSection` 166ea844a1aSMatthew Knepley 167ea844a1aSMatthew Knepley Output Parameter: 168ea844a1aSMatthew Knepley . newSection - the copy 169ea844a1aSMatthew Knepley 170ea844a1aSMatthew Knepley Level: beginner 171ea844a1aSMatthew Knepley 172cab54364SBarry Smith Developer Note: 173cab54364SBarry Smith With standard PETSc terminology this should be called `PetscSectionDuplicate()` 174cab54364SBarry Smith 175cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`, `PetscSectionCopy()` 176ea844a1aSMatthew Knepley @*/ 177d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionClone(PetscSection section, PetscSection *newSection) 178d71ae5a4SJacob Faibussowitsch { 179ea844a1aSMatthew Knepley PetscFunctionBegin; 180ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 181ea844a1aSMatthew Knepley PetscValidPointer(newSection, 2); 1829566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)section), newSection)); 1839566063dSJacob Faibussowitsch PetscCall(PetscSectionCopy(section, *newSection)); 184ea844a1aSMatthew Knepley PetscFunctionReturn(0); 185ea844a1aSMatthew Knepley } 186ea844a1aSMatthew Knepley 187ea844a1aSMatthew Knepley /*@ 188cab54364SBarry Smith PetscSectionSetFromOptions - sets parameters in a `PetscSection` from the options database 189ea844a1aSMatthew Knepley 19040750d41SVaclav Hapla Collective 191ea844a1aSMatthew Knepley 192ea844a1aSMatthew Knepley Input Parameter: 193cab54364SBarry Smith . section - the `PetscSection` 194ea844a1aSMatthew Knepley 195ea844a1aSMatthew Knepley Options Database: 196cab54364SBarry Smith . -petscsection_point_major - `PETSC_TRUE` for point-major order 197ea844a1aSMatthew Knepley 198ea844a1aSMatthew Knepley Level: intermediate 199ea844a1aSMatthew Knepley 200cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()` 201ea844a1aSMatthew Knepley @*/ 202d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFromOptions(PetscSection s) 203d71ae5a4SJacob Faibussowitsch { 204ea844a1aSMatthew Knepley PetscFunctionBegin; 205ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 206d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)s); 2079566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-petscsection_point_major", "The for ordering, either point major or field major", "PetscSectionSetPointMajor", s->pointMajor, &s->pointMajor, NULL)); 208ea844a1aSMatthew Knepley /* process any options handlers added with PetscObjectAddOptionsHandler() */ 209dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)s, PetscOptionsObject)); 210d0609cedSBarry Smith PetscOptionsEnd(); 2119566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)s, NULL, "-petscsection_view")); 212ea844a1aSMatthew Knepley PetscFunctionReturn(0); 213ea844a1aSMatthew Knepley } 214ea844a1aSMatthew Knepley 215ea844a1aSMatthew Knepley /*@ 216ea844a1aSMatthew Knepley PetscSectionCompare - Compares two sections 217ea844a1aSMatthew Knepley 21840750d41SVaclav Hapla Collective 219ea844a1aSMatthew Knepley 2207a7aea1fSJed Brown Input Parameters: 221cab54364SBarry Smith + s1 - the first `PetscSection` 222cab54364SBarry Smith - s2 - the second `PetscSection` 223ea844a1aSMatthew Knepley 224ea844a1aSMatthew Knepley Output Parameter: 225cab54364SBarry Smith . congruent - `PETSC_TRUE` if the two sections are congruent, `PETSC_FALSE` otherwise 226ea844a1aSMatthew Knepley 227ea844a1aSMatthew Knepley Level: intermediate 228ea844a1aSMatthew Knepley 229cab54364SBarry Smith Note: 230ea844a1aSMatthew Knepley Field names are disregarded. 231ea844a1aSMatthew Knepley 232cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionCopy()`, `PetscSectionClone()` 233ea844a1aSMatthew Knepley @*/ 234d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCompare(PetscSection s1, PetscSection s2, PetscBool *congruent) 235d71ae5a4SJacob Faibussowitsch { 236ea844a1aSMatthew Knepley PetscInt pStart, pEnd, nfields, ncdof, nfcdof, p, f, n1, n2; 237ea844a1aSMatthew Knepley const PetscInt *idx1, *idx2; 238ea844a1aSMatthew Knepley IS perm1, perm2; 239ea844a1aSMatthew Knepley PetscBool flg; 240ea844a1aSMatthew Knepley PetscMPIInt mflg; 241ea844a1aSMatthew Knepley 242ea844a1aSMatthew Knepley PetscFunctionBegin; 243ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s1, PETSC_SECTION_CLASSID, 1); 244ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s2, PETSC_SECTION_CLASSID, 2); 245064a246eSJacob Faibussowitsch PetscValidBoolPointer(congruent, 3); 246ea844a1aSMatthew Knepley flg = PETSC_FALSE; 247ea844a1aSMatthew Knepley 2489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)s1), PetscObjectComm((PetscObject)s2), &mflg)); 249ea844a1aSMatthew Knepley if (mflg != MPI_CONGRUENT && mflg != MPI_IDENT) { 250ea844a1aSMatthew Knepley *congruent = PETSC_FALSE; 251ea844a1aSMatthew Knepley PetscFunctionReturn(0); 252ea844a1aSMatthew Knepley } 253ea844a1aSMatthew Knepley 2549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s1, &pStart, &pEnd)); 2559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s2, &n1, &n2)); 256ea844a1aSMatthew Knepley if (pStart != n1 || pEnd != n2) goto not_congruent; 257ea844a1aSMatthew Knepley 2589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPermutation(s1, &perm1)); 2599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPermutation(s2, &perm2)); 260ea844a1aSMatthew Knepley if (perm1 && perm2) { 2619566063dSJacob Faibussowitsch PetscCall(ISEqual(perm1, perm2, congruent)); 262ea844a1aSMatthew Knepley if (!(*congruent)) goto not_congruent; 263ea844a1aSMatthew Knepley } else if (perm1 != perm2) goto not_congruent; 264ea844a1aSMatthew Knepley 265ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 2669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s1, p, &n1)); 2679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s2, p, &n2)); 268ea844a1aSMatthew Knepley if (n1 != n2) goto not_congruent; 269ea844a1aSMatthew Knepley 2709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s1, p, &n1)); 2719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s2, p, &n2)); 272ea844a1aSMatthew Knepley if (n1 != n2) goto not_congruent; 273ea844a1aSMatthew Knepley 2749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s1, p, &ncdof)); 2759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s2, p, &n2)); 276ea844a1aSMatthew Knepley if (ncdof != n2) goto not_congruent; 277ea844a1aSMatthew Knepley 2789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s1, p, &idx1)); 2799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s2, p, &idx2)); 2809566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(idx1, idx2, ncdof, congruent)); 281ea844a1aSMatthew Knepley if (!(*congruent)) goto not_congruent; 282ea844a1aSMatthew Knepley } 283ea844a1aSMatthew Knepley 2849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s1, &nfields)); 2859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s2, &n2)); 286ea844a1aSMatthew Knepley if (nfields != n2) goto not_congruent; 287ea844a1aSMatthew Knepley 288ea844a1aSMatthew Knepley for (f = 0; f < nfields; ++f) { 2899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s1, f, &n1)); 2909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s2, f, &n2)); 291ea844a1aSMatthew Knepley if (n1 != n2) goto not_congruent; 292ea844a1aSMatthew Knepley 293ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 2949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(s1, p, f, &n1)); 2959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(s2, p, f, &n2)); 296ea844a1aSMatthew Knepley if (n1 != n2) goto not_congruent; 297ea844a1aSMatthew Knepley 2989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s1, p, f, &n1)); 2999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s2, p, f, &n2)); 300ea844a1aSMatthew Knepley if (n1 != n2) goto not_congruent; 301ea844a1aSMatthew Knepley 3029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s1, p, f, &nfcdof)); 3039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s2, p, f, &n2)); 304ea844a1aSMatthew Knepley if (nfcdof != n2) goto not_congruent; 305ea844a1aSMatthew Knepley 3069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(s1, p, f, &idx1)); 3079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(s2, p, f, &idx2)); 3089566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(idx1, idx2, nfcdof, congruent)); 309ea844a1aSMatthew Knepley if (!(*congruent)) goto not_congruent; 310ea844a1aSMatthew Knepley } 311ea844a1aSMatthew Knepley } 312ea844a1aSMatthew Knepley 313ea844a1aSMatthew Knepley flg = PETSC_TRUE; 314ea844a1aSMatthew Knepley not_congruent: 3151c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, congruent, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)s1))); 316ea844a1aSMatthew Knepley PetscFunctionReturn(0); 317ea844a1aSMatthew Knepley } 318ea844a1aSMatthew Knepley 319ea844a1aSMatthew Knepley /*@ 320cab54364SBarry Smith PetscSectionGetNumFields - Returns the number of fields in a `PetscSection`, or 0 if no fields were defined. 321ea844a1aSMatthew Knepley 32240750d41SVaclav Hapla Not Collective 323ea844a1aSMatthew Knepley 324ea844a1aSMatthew Knepley Input Parameter: 325cab54364SBarry Smith . s - the `PetscSection` 326ea844a1aSMatthew Knepley 327ea844a1aSMatthew Knepley Output Parameter: 328ea844a1aSMatthew Knepley . numFields - the number of fields defined, or 0 if none were defined 329ea844a1aSMatthew Knepley 330ea844a1aSMatthew Knepley Level: intermediate 331ea844a1aSMatthew Knepley 332cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetNumFields()` 333ea844a1aSMatthew Knepley @*/ 334d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetNumFields(PetscSection s, PetscInt *numFields) 335d71ae5a4SJacob Faibussowitsch { 336ea844a1aSMatthew Knepley PetscFunctionBegin; 337ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 338dadcf809SJacob Faibussowitsch PetscValidIntPointer(numFields, 2); 339ea844a1aSMatthew Knepley *numFields = s->numFields; 340ea844a1aSMatthew Knepley PetscFunctionReturn(0); 341ea844a1aSMatthew Knepley } 342ea844a1aSMatthew Knepley 343ea844a1aSMatthew Knepley /*@ 344cab54364SBarry Smith PetscSectionSetNumFields - Sets the number of fields in a `PetscSection` 345ea844a1aSMatthew Knepley 34640750d41SVaclav Hapla Not Collective 347ea844a1aSMatthew Knepley 348ea844a1aSMatthew Knepley Input Parameters: 349ea844a1aSMatthew Knepley + s - the PetscSection 350ea844a1aSMatthew Knepley - numFields - the number of fields 351ea844a1aSMatthew Knepley 352ea844a1aSMatthew Knepley Level: intermediate 353ea844a1aSMatthew Knepley 354cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection()`, `PetscSectionGetNumFields()` 355ea844a1aSMatthew Knepley @*/ 356d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetNumFields(PetscSection s, PetscInt numFields) 357d71ae5a4SJacob Faibussowitsch { 358ea844a1aSMatthew Knepley PetscInt f; 359ea844a1aSMatthew Knepley 360ea844a1aSMatthew Knepley PetscFunctionBegin; 361ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 36208401ef6SPierre Jolivet PetscCheck(numFields > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "The number of fields %" PetscInt_FMT " must be positive", numFields); 3639566063dSJacob Faibussowitsch PetscCall(PetscSectionReset(s)); 364ea844a1aSMatthew Knepley 365ea844a1aSMatthew Knepley s->numFields = numFields; 3669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(s->numFields, &s->numFieldComponents)); 3679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(s->numFields, &s->fieldNames)); 3689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(s->numFields, &s->compNames)); 3699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(s->numFields, &s->field)); 370ea844a1aSMatthew Knepley for (f = 0; f < s->numFields; ++f) { 371ea844a1aSMatthew Knepley char name[64]; 372ea844a1aSMatthew Knepley 373ea844a1aSMatthew Knepley s->numFieldComponents[f] = 1; 374ea844a1aSMatthew Knepley 3759566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), &s->field[f])); 3769566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(name, 64, "Field_%" PetscInt_FMT, f)); 3779566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, (char **)&s->fieldNames[f])); 3789566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(name, 64, "Component_0")); 3799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(s->numFieldComponents[f], &s->compNames[f])); 3809566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, (char **)&s->compNames[f][0])); 381ea844a1aSMatthew Knepley } 382ea844a1aSMatthew Knepley PetscFunctionReturn(0); 383ea844a1aSMatthew Knepley } 384ea844a1aSMatthew Knepley 385ea844a1aSMatthew Knepley /*@C 386cab54364SBarry Smith PetscSectionGetFieldName - Returns the name of a field in the `PetscSection` 387ea844a1aSMatthew Knepley 388ea844a1aSMatthew Knepley Not Collective 389ea844a1aSMatthew Knepley 390ea844a1aSMatthew Knepley Input Parameters: 391cab54364SBarry Smith + s - the `PetscSection` 392ea844a1aSMatthew Knepley - field - the field number 393ea844a1aSMatthew Knepley 394ea844a1aSMatthew Knepley Output Parameter: 395ea844a1aSMatthew Knepley . fieldName - the field name 396ea844a1aSMatthew Knepley 397ea844a1aSMatthew Knepley Level: intermediate 398ea844a1aSMatthew Knepley 399cab54364SBarry Smith Note: 400cab54364SBarry Smith Will error if the field number is out of range 401cab54364SBarry Smith 402cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()` 403ea844a1aSMatthew Knepley @*/ 404d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldName(PetscSection s, PetscInt field, const char *fieldName[]) 405d71ae5a4SJacob Faibussowitsch { 406ea844a1aSMatthew Knepley PetscFunctionBegin; 407ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 408ea844a1aSMatthew Knepley PetscValidPointer(fieldName, 3); 4092abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 410ea844a1aSMatthew Knepley *fieldName = s->fieldNames[field]; 411ea844a1aSMatthew Knepley PetscFunctionReturn(0); 412ea844a1aSMatthew Knepley } 413ea844a1aSMatthew Knepley 414ea844a1aSMatthew Knepley /*@C 415cab54364SBarry Smith PetscSectionSetFieldName - Sets the name of a field in the `PetscSection` 416ea844a1aSMatthew Knepley 417ea844a1aSMatthew Knepley Not Collective 418ea844a1aSMatthew Knepley 419ea844a1aSMatthew Knepley Input Parameters: 420cab54364SBarry Smith + s - the `PetscSection` 421ea844a1aSMatthew Knepley . field - the field number 422ea844a1aSMatthew Knepley - fieldName - the field name 423ea844a1aSMatthew Knepley 424ea844a1aSMatthew Knepley Level: intermediate 425ea844a1aSMatthew Knepley 426cab54364SBarry Smith Note: 427cab54364SBarry Smith Will error if the field number is out of range 428cab54364SBarry Smith 429cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionGetFieldName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()` 430ea844a1aSMatthew Knepley @*/ 431d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldName(PetscSection s, PetscInt field, const char fieldName[]) 432d71ae5a4SJacob Faibussowitsch { 433ea844a1aSMatthew Knepley PetscFunctionBegin; 434ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 435ea844a1aSMatthew Knepley if (fieldName) PetscValidCharPointer(fieldName, 3); 4362abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 4379566063dSJacob Faibussowitsch PetscCall(PetscFree(s->fieldNames[field])); 4389566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&s->fieldNames[field])); 439ea844a1aSMatthew Knepley PetscFunctionReturn(0); 440ea844a1aSMatthew Knepley } 441ea844a1aSMatthew Knepley 442b778fa18SValeria Barra /*@C 443cab54364SBarry Smith PetscSectionGetComponentName - Gets the name of a field component in the `PetscSection` 444b778fa18SValeria Barra 445b778fa18SValeria Barra Not Collective 446b778fa18SValeria Barra 447b778fa18SValeria Barra Input Parameters: 448cab54364SBarry Smith + s - the `PetscSection` 449b778fa18SValeria Barra . field - the field number 450cab54364SBarry Smith - comp - the component number 451cab54364SBarry Smith 452*d5b43468SJose E. Roman Output Parameter: 453cab54364SBarry Smith . compName - the component name 454b778fa18SValeria Barra 455b778fa18SValeria Barra Level: intermediate 456b778fa18SValeria Barra 457cab54364SBarry Smith Note: 458cab54364SBarry Smith Will error if the field or component number do not exist 459cab54364SBarry Smith 460cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()`, 461cab54364SBarry Smith `PetscSectionSetComponentName()`, `PetscSectionSetFieldName()`, `PetscSectionGetFieldComponents()`, `PetscSectionSetFieldComponents()` 462b778fa18SValeria Barra @*/ 463d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetComponentName(PetscSection s, PetscInt field, PetscInt comp, const char *compName[]) 464d71ae5a4SJacob Faibussowitsch { 465b778fa18SValeria Barra PetscFunctionBegin; 466b778fa18SValeria Barra PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 467064a246eSJacob Faibussowitsch PetscValidPointer(compName, 4); 4682abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 4692abc8c78SJacob Faibussowitsch PetscSectionCheckValidFieldComponent(comp, s->numFieldComponents[field]); 470b778fa18SValeria Barra *compName = s->compNames[field][comp]; 471b778fa18SValeria Barra PetscFunctionReturn(0); 472b778fa18SValeria Barra } 473b778fa18SValeria Barra 474b778fa18SValeria Barra /*@C 475cab54364SBarry Smith PetscSectionSetComponentName - Sets the name of a field component in the `PetscSection` 476b778fa18SValeria Barra 477b778fa18SValeria Barra Not Collective 478b778fa18SValeria Barra 479b778fa18SValeria Barra Input Parameters: 480b778fa18SValeria Barra + s - the PetscSection 481b778fa18SValeria Barra . field - the field number 482b778fa18SValeria Barra . comp - the component number 483b778fa18SValeria Barra - compName - the component name 484b778fa18SValeria Barra 485b778fa18SValeria Barra Level: intermediate 486b778fa18SValeria Barra 487cab54364SBarry Smith Note: 488cab54364SBarry Smith Will error if the field or component number do not exist 489cab54364SBarry Smith 490cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetComponentName()`, `PetscSectionSetNumFields()`, `PetscSectionGetNumFields()`, 491cab54364SBarry Smith `PetscSectionSetComponentName()`, `PetscSectionSetFieldName()`, `PetscSectionGetFieldComponents()`, `PetscSectionSetFieldComponents()` 492b778fa18SValeria Barra @*/ 493d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetComponentName(PetscSection s, PetscInt field, PetscInt comp, const char compName[]) 494d71ae5a4SJacob Faibussowitsch { 495b778fa18SValeria Barra PetscFunctionBegin; 496b778fa18SValeria Barra PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 497064a246eSJacob Faibussowitsch if (compName) PetscValidCharPointer(compName, 4); 4982abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 4992abc8c78SJacob Faibussowitsch PetscSectionCheckValidFieldComponent(comp, s->numFieldComponents[field]); 5009566063dSJacob Faibussowitsch PetscCall(PetscFree(s->compNames[field][comp])); 5019566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(compName, (char **)&s->compNames[field][comp])); 502b778fa18SValeria Barra PetscFunctionReturn(0); 503b778fa18SValeria Barra } 504b778fa18SValeria Barra 505ea844a1aSMatthew Knepley /*@ 506ea844a1aSMatthew Knepley PetscSectionGetFieldComponents - Returns the number of field components for the given field. 507ea844a1aSMatthew Knepley 50840750d41SVaclav Hapla Not Collective 509ea844a1aSMatthew Knepley 510ea844a1aSMatthew Knepley Input Parameters: 511cab54364SBarry Smith + s - the `PetscSection` 512ea844a1aSMatthew Knepley - field - the field number 513ea844a1aSMatthew Knepley 514ea844a1aSMatthew Knepley Output Parameter: 515ea844a1aSMatthew Knepley . numComp - the number of field components 516ea844a1aSMatthew Knepley 517ea844a1aSMatthew Knepley Level: intermediate 518ea844a1aSMatthew Knepley 519cab54364SBarry Smith Developer Note: 520cab54364SBarry Smith This function is misnamed. There is a Num in `PetscSectionGetNumFields()` but not in this name 521cab54364SBarry Smith 522cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldComponents()`, `PetscSectionGetNumFields()` 523ea844a1aSMatthew Knepley @*/ 524d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldComponents(PetscSection s, PetscInt field, PetscInt *numComp) 525d71ae5a4SJacob Faibussowitsch { 526ea844a1aSMatthew Knepley PetscFunctionBegin; 527ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 5282abc8c78SJacob Faibussowitsch PetscValidIntPointer(numComp, 3); 5292abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 530ea844a1aSMatthew Knepley *numComp = s->numFieldComponents[field]; 531ea844a1aSMatthew Knepley PetscFunctionReturn(0); 532ea844a1aSMatthew Knepley } 533ea844a1aSMatthew Knepley 534ea844a1aSMatthew Knepley /*@ 535ea844a1aSMatthew Knepley PetscSectionSetFieldComponents - Sets the number of field components for the given field. 536ea844a1aSMatthew Knepley 53740750d41SVaclav Hapla Not Collective 538ea844a1aSMatthew Knepley 539ea844a1aSMatthew Knepley Input Parameters: 540ea844a1aSMatthew Knepley + s - the PetscSection 541ea844a1aSMatthew Knepley . field - the field number 542ea844a1aSMatthew Knepley - numComp - the number of field components 543ea844a1aSMatthew Knepley 544ea844a1aSMatthew Knepley Level: intermediate 545ea844a1aSMatthew Knepley 546cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldComponents()`, `PetscSectionGetNumFields()` 547ea844a1aSMatthew Knepley @*/ 548d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldComponents(PetscSection s, PetscInt field, PetscInt numComp) 549d71ae5a4SJacob Faibussowitsch { 550b778fa18SValeria Barra PetscInt c; 551b778fa18SValeria Barra 552ea844a1aSMatthew Knepley PetscFunctionBegin; 553ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 5542abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 555b778fa18SValeria Barra if (s->compNames) { 55648a46eb9SPierre Jolivet for (c = 0; c < s->numFieldComponents[field]; ++c) PetscCall(PetscFree(s->compNames[field][c])); 5579566063dSJacob Faibussowitsch PetscCall(PetscFree(s->compNames[field])); 558b778fa18SValeria Barra } 559b778fa18SValeria Barra 560ea844a1aSMatthew Knepley s->numFieldComponents[field] = numComp; 561b778fa18SValeria Barra if (numComp) { 5629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numComp, (char ***)&s->compNames[field])); 563b778fa18SValeria Barra for (c = 0; c < numComp; ++c) { 5642abc8c78SJacob Faibussowitsch char name[64]; 5652abc8c78SJacob Faibussowitsch 5669566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(name, 64, "%" PetscInt_FMT, c)); 5679566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, (char **)&s->compNames[field][c])); 568b778fa18SValeria Barra } 569b778fa18SValeria Barra } 570ea844a1aSMatthew Knepley PetscFunctionReturn(0); 571ea844a1aSMatthew Knepley } 572ea844a1aSMatthew Knepley 573ea844a1aSMatthew Knepley /*@ 574cab54364SBarry Smith PetscSectionGetChart - Returns the range [pStart, pEnd) in which points (indices) lie for this `PetscSection` 575ea844a1aSMatthew Knepley 57640750d41SVaclav Hapla Not Collective 577ea844a1aSMatthew Knepley 578ea844a1aSMatthew Knepley Input Parameter: 579cab54364SBarry Smith . s - the `PetscSection` 580ea844a1aSMatthew Knepley 581ea844a1aSMatthew Knepley Output Parameters: 582ea844a1aSMatthew Knepley + pStart - the first point 583ea844a1aSMatthew Knepley - pEnd - one past the last point 584ea844a1aSMatthew Knepley 585ea844a1aSMatthew Knepley Level: intermediate 586ea844a1aSMatthew Knepley 587cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetChart()`, `PetscSectionCreate()` 588ea844a1aSMatthew Knepley @*/ 589d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetChart(PetscSection s, PetscInt *pStart, PetscInt *pEnd) 590d71ae5a4SJacob Faibussowitsch { 591ea844a1aSMatthew Knepley PetscFunctionBegin; 592ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 593ea844a1aSMatthew Knepley if (pStart) *pStart = s->pStart; 594ea844a1aSMatthew Knepley if (pEnd) *pEnd = s->pEnd; 595ea844a1aSMatthew Knepley PetscFunctionReturn(0); 596ea844a1aSMatthew Knepley } 597ea844a1aSMatthew Knepley 598ea844a1aSMatthew Knepley /*@ 599cab54364SBarry Smith PetscSectionSetChart - Sets the range [pStart, pEnd) in which points (indices) lie for this `PetscSection` 600ea844a1aSMatthew Knepley 60140750d41SVaclav Hapla Not Collective 602ea844a1aSMatthew Knepley 603ea844a1aSMatthew Knepley Input Parameters: 604ea844a1aSMatthew Knepley + s - the PetscSection 605ea844a1aSMatthew Knepley . pStart - the first point 606ea844a1aSMatthew Knepley - pEnd - one past the last point 607ea844a1aSMatthew Knepley 608ea844a1aSMatthew Knepley Level: intermediate 609ea844a1aSMatthew Knepley 610cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetChart()`, `PetscSectionCreate()` 611ea844a1aSMatthew Knepley @*/ 612d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetChart(PetscSection s, PetscInt pStart, PetscInt pEnd) 613d71ae5a4SJacob Faibussowitsch { 614ea844a1aSMatthew Knepley PetscInt f; 615ea844a1aSMatthew Knepley 616ea844a1aSMatthew Knepley PetscFunctionBegin; 617ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 6189318fe57SMatthew G. Knepley if (pStart == s->pStart && pEnd == s->pEnd) PetscFunctionReturn(0); 619ea844a1aSMatthew Knepley /* Cannot Reset() because it destroys field information */ 620ea844a1aSMatthew Knepley s->setup = PETSC_FALSE; 6219566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s->bc)); 6229566063dSJacob Faibussowitsch PetscCall(PetscFree(s->bcIndices)); 6239566063dSJacob Faibussowitsch PetscCall(PetscFree2(s->atlasDof, s->atlasOff)); 624ea844a1aSMatthew Knepley 625ea844a1aSMatthew Knepley s->pStart = pStart; 626ea844a1aSMatthew Knepley s->pEnd = pEnd; 6279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2((pEnd - pStart), &s->atlasDof, (pEnd - pStart), &s->atlasOff)); 6289566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(s->atlasDof, pEnd - pStart)); 62948a46eb9SPierre Jolivet for (f = 0; f < s->numFields; ++f) PetscCall(PetscSectionSetChart(s->field[f], pStart, pEnd)); 630ea844a1aSMatthew Knepley PetscFunctionReturn(0); 631ea844a1aSMatthew Knepley } 632ea844a1aSMatthew Knepley 633ea844a1aSMatthew Knepley /*@ 634cab54364SBarry Smith PetscSectionGetPermutation - Returns the permutation of [0, pEnd-pStart) or NULL that was set with `PetscSectionSetPermutation()` 635ea844a1aSMatthew Knepley 63640750d41SVaclav Hapla Not Collective 637ea844a1aSMatthew Knepley 638ea844a1aSMatthew Knepley Input Parameter: 639cab54364SBarry Smith . s - the `PetscSection` 640ea844a1aSMatthew Knepley 641ea844a1aSMatthew Knepley Output Parameters: 642cab54364SBarry Smith . perm - The permutation as an `IS` 643ea844a1aSMatthew Knepley 644ea844a1aSMatthew Knepley Level: intermediate 645ea844a1aSMatthew Knepley 646cab54364SBarry Smith .seealso: [](sec_scatter), `IS`, `PetscSection`, `PetscSectionSetPermutation()`, `PetscSectionCreate()` 647ea844a1aSMatthew Knepley @*/ 648d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetPermutation(PetscSection s, IS *perm) 649d71ae5a4SJacob Faibussowitsch { 650ea844a1aSMatthew Knepley PetscFunctionBegin; 651ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 6529371c9d4SSatish Balay if (perm) { 6539371c9d4SSatish Balay PetscValidPointer(perm, 2); 6549371c9d4SSatish Balay *perm = s->perm; 6559371c9d4SSatish Balay } 656ea844a1aSMatthew Knepley PetscFunctionReturn(0); 657ea844a1aSMatthew Knepley } 658ea844a1aSMatthew Knepley 659ea844a1aSMatthew Knepley /*@ 660ea844a1aSMatthew Knepley PetscSectionSetPermutation - Sets the permutation for [0, pEnd-pStart) 661ea844a1aSMatthew Knepley 66240750d41SVaclav Hapla Not Collective 663ea844a1aSMatthew Knepley 664ea844a1aSMatthew Knepley Input Parameters: 665ea844a1aSMatthew Knepley + s - the PetscSection 666ea844a1aSMatthew Knepley - perm - the permutation of points 667ea844a1aSMatthew Knepley 668ea844a1aSMatthew Knepley Level: intermediate 669ea844a1aSMatthew Knepley 670cab54364SBarry Smith Developer Note: 671cab54364SBarry Smith What purpose does this permutation serve? 672cab54364SBarry Smith 673cab54364SBarry Smith .seealso: [](sec_scatter), `IS`, `PetscSection`, `PetscSectionGetPermutation()`, `PetscSectionCreate()` 674ea844a1aSMatthew Knepley @*/ 675d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetPermutation(PetscSection s, IS perm) 676d71ae5a4SJacob Faibussowitsch { 677ea844a1aSMatthew Knepley PetscFunctionBegin; 678ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 679ea844a1aSMatthew Knepley if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 2); 68028b400f6SJacob Faibussowitsch PetscCheck(!s->setup, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONGSTATE, "Cannot set a permutation after the section is setup"); 681ea844a1aSMatthew Knepley if (s->perm != perm) { 6829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&s->perm)); 683ea844a1aSMatthew Knepley if (perm) { 684ea844a1aSMatthew Knepley s->perm = perm; 6859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)s->perm)); 686ea844a1aSMatthew Knepley } 687ea844a1aSMatthew Knepley } 688ea844a1aSMatthew Knepley PetscFunctionReturn(0); 689ea844a1aSMatthew Knepley } 690ea844a1aSMatthew Knepley 691ea844a1aSMatthew Knepley /*@ 692cab54364SBarry Smith PetscSectionGetPointMajor - Returns the flag for dof ordering, `PETSC_TRUE` if it is point major, `PETSC_FALSE` if it is field major 693ea844a1aSMatthew Knepley 69440750d41SVaclav Hapla Not Collective 695ea844a1aSMatthew Knepley 696ea844a1aSMatthew Knepley Input Parameter: 697cab54364SBarry Smith . s - the `PetscSection` 698ea844a1aSMatthew Knepley 699ea844a1aSMatthew Knepley Output Parameter: 700ea844a1aSMatthew Knepley . pm - the flag for point major ordering 701ea844a1aSMatthew Knepley 702ea844a1aSMatthew Knepley Level: intermediate 703ea844a1aSMatthew Knepley 704cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, PetscSectionSetPointMajor()` 705ea844a1aSMatthew Knepley @*/ 706d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetPointMajor(PetscSection s, PetscBool *pm) 707d71ae5a4SJacob Faibussowitsch { 708ea844a1aSMatthew Knepley PetscFunctionBegin; 709ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 710dadcf809SJacob Faibussowitsch PetscValidBoolPointer(pm, 2); 711ea844a1aSMatthew Knepley *pm = s->pointMajor; 712ea844a1aSMatthew Knepley PetscFunctionReturn(0); 713ea844a1aSMatthew Knepley } 714ea844a1aSMatthew Knepley 715ea844a1aSMatthew Knepley /*@ 716cab54364SBarry Smith PetscSectionSetPointMajor - Sets the flag for dof ordering, `PETSC_TRUE` for point major, otherwise it will be field major 717ea844a1aSMatthew Knepley 71840750d41SVaclav Hapla Not Collective 719ea844a1aSMatthew Knepley 720ea844a1aSMatthew Knepley Input Parameters: 721cab54364SBarry Smith + s - the `PetscSection` 722ea844a1aSMatthew Knepley - pm - the flag for point major ordering 723ea844a1aSMatthew Knepley 724ea844a1aSMatthew Knepley Level: intermediate 725ea844a1aSMatthew Knepley 726cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetPointMajor()` 727ea844a1aSMatthew Knepley @*/ 728d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetPointMajor(PetscSection s, PetscBool pm) 729d71ae5a4SJacob Faibussowitsch { 730ea844a1aSMatthew Knepley PetscFunctionBegin; 731ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 73228b400f6SJacob Faibussowitsch PetscCheck(!s->setup, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONGSTATE, "Cannot set the dof ordering after the section is setup"); 733ea844a1aSMatthew Knepley s->pointMajor = pm; 734ea844a1aSMatthew Knepley PetscFunctionReturn(0); 735ea844a1aSMatthew Knepley } 736ea844a1aSMatthew Knepley 737ea844a1aSMatthew Knepley /*@ 738cab54364SBarry Smith PetscSectionGetIncludesConstraints - Returns the flag indicating if constrained dofs were included when computing offsets in the `PetscSection`. 739cab54364SBarry Smith The value is set with `PetscSectionSetIncludesConstraints()` 74087e637c6Sksagiyam 74140750d41SVaclav Hapla Not Collective 74287e637c6Sksagiyam 74387e637c6Sksagiyam Input Parameter: 744cab54364SBarry Smith . s - the `PetscSection` 74587e637c6Sksagiyam 74687e637c6Sksagiyam Output Parameter: 74787e637c6Sksagiyam . includesConstraints - the flag indicating if constrained dofs were included when computing offsets 74887e637c6Sksagiyam 74987e637c6Sksagiyam Level: intermediate 75087e637c6Sksagiyam 751cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetIncludesConstraints()` 75287e637c6Sksagiyam @*/ 753d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetIncludesConstraints(PetscSection s, PetscBool *includesConstraints) 754d71ae5a4SJacob Faibussowitsch { 75587e637c6Sksagiyam PetscFunctionBegin; 75687e637c6Sksagiyam PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 75787e637c6Sksagiyam PetscValidBoolPointer(includesConstraints, 2); 75887e637c6Sksagiyam *includesConstraints = s->includesConstraints; 75987e637c6Sksagiyam PetscFunctionReturn(0); 76087e637c6Sksagiyam } 76187e637c6Sksagiyam 76287e637c6Sksagiyam /*@ 76387e637c6Sksagiyam PetscSectionSetIncludesConstraints - Sets the flag indicating if constrained dofs are to be included when computing offsets 76487e637c6Sksagiyam 76540750d41SVaclav Hapla Not Collective 76687e637c6Sksagiyam 76787e637c6Sksagiyam Input Parameters: 76887e637c6Sksagiyam + s - the PetscSection 76987e637c6Sksagiyam - includesConstraints - the flag indicating if constrained dofs are to be included when computing offsets 77087e637c6Sksagiyam 77187e637c6Sksagiyam Level: intermediate 77287e637c6Sksagiyam 773cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetIncludesConstraints()` 77487e637c6Sksagiyam @*/ 775d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetIncludesConstraints(PetscSection s, PetscBool includesConstraints) 776d71ae5a4SJacob Faibussowitsch { 77787e637c6Sksagiyam PetscFunctionBegin; 77887e637c6Sksagiyam PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 77928b400f6SJacob Faibussowitsch PetscCheck(!s->setup, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONGSTATE, "Cannot set includesConstraints after the section is set up"); 78087e637c6Sksagiyam s->includesConstraints = includesConstraints; 78187e637c6Sksagiyam PetscFunctionReturn(0); 78287e637c6Sksagiyam } 78387e637c6Sksagiyam 78487e637c6Sksagiyam /*@ 785ea844a1aSMatthew Knepley PetscSectionGetDof - Return the number of degrees of freedom associated with a given point. 786ea844a1aSMatthew Knepley 78740750d41SVaclav Hapla Not Collective 788ea844a1aSMatthew Knepley 789ea844a1aSMatthew Knepley Input Parameters: 790cab54364SBarry Smith + s - the `PetscSection` 791ea844a1aSMatthew Knepley - point - the point 792ea844a1aSMatthew Knepley 793ea844a1aSMatthew Knepley Output Parameter: 794ea844a1aSMatthew Knepley . numDof - the number of dof 795ea844a1aSMatthew Knepley 796ea844a1aSMatthew Knepley Level: intermediate 797ea844a1aSMatthew Knepley 798cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetDof()`, `PetscSectionCreate()` 799ea844a1aSMatthew Knepley @*/ 800d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetDof(PetscSection s, PetscInt point, PetscInt *numDof) 801d71ae5a4SJacob Faibussowitsch { 80276bd3646SJed Brown PetscFunctionBeginHot; 803ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 804dadcf809SJacob Faibussowitsch PetscValidIntPointer(numDof, 3); 805c8bf3acbSVaclav Hapla PetscAssert(point >= s->pStart && point < s->pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd); 806ea844a1aSMatthew Knepley *numDof = s->atlasDof[point - s->pStart]; 807ea844a1aSMatthew Knepley PetscFunctionReturn(0); 808ea844a1aSMatthew Knepley } 809ea844a1aSMatthew Knepley 810ea844a1aSMatthew Knepley /*@ 811ea844a1aSMatthew Knepley PetscSectionSetDof - Sets the number of degrees of freedom associated with a given point. 812ea844a1aSMatthew Knepley 81340750d41SVaclav Hapla Not Collective 814ea844a1aSMatthew Knepley 815ea844a1aSMatthew Knepley Input Parameters: 816cab54364SBarry Smith + s - the `PetscSection` 817ea844a1aSMatthew Knepley . point - the point 818ea844a1aSMatthew Knepley - numDof - the number of dof 819ea844a1aSMatthew Knepley 820ea844a1aSMatthew Knepley Level: intermediate 821ea844a1aSMatthew Knepley 822cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionAddDof()`, `PetscSectionCreate()` 823ea844a1aSMatthew Knepley @*/ 824d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetDof(PetscSection s, PetscInt point, PetscInt numDof) 825d71ae5a4SJacob Faibussowitsch { 826ea844a1aSMatthew Knepley PetscFunctionBegin; 827ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 828c8bf3acbSVaclav Hapla PetscAssert(point >= s->pStart && point < s->pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd); 829ea844a1aSMatthew Knepley s->atlasDof[point - s->pStart] = numDof; 83069c11d05SVaclav Hapla PetscCall(PetscSectionInvalidateMaxDof_Internal(s)); 831ea844a1aSMatthew Knepley PetscFunctionReturn(0); 832ea844a1aSMatthew Knepley } 833ea844a1aSMatthew Knepley 834ea844a1aSMatthew Knepley /*@ 835ea844a1aSMatthew Knepley PetscSectionAddDof - Adds to the number of degrees of freedom associated with a given point. 836ea844a1aSMatthew Knepley 83740750d41SVaclav Hapla Not Collective 838ea844a1aSMatthew Knepley 839ea844a1aSMatthew Knepley Input Parameters: 840cab54364SBarry Smith + s - the `PetscSection` 841ea844a1aSMatthew Knepley . point - the point 842ea844a1aSMatthew Knepley - numDof - the number of additional dof 843ea844a1aSMatthew Knepley 844ea844a1aSMatthew Knepley Level: intermediate 845ea844a1aSMatthew Knepley 846cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetDof()`, `PetscSectionCreate()` 847ea844a1aSMatthew Knepley @*/ 848d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionAddDof(PetscSection s, PetscInt point, PetscInt numDof) 849d71ae5a4SJacob Faibussowitsch { 85076bd3646SJed Brown PetscFunctionBeginHot; 851ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 852c8bf3acbSVaclav Hapla PetscAssert(point >= s->pStart && point < s->pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd); 853ea844a1aSMatthew Knepley s->atlasDof[point - s->pStart] += numDof; 85469c11d05SVaclav Hapla PetscCall(PetscSectionInvalidateMaxDof_Internal(s)); 855ea844a1aSMatthew Knepley PetscFunctionReturn(0); 856ea844a1aSMatthew Knepley } 857ea844a1aSMatthew Knepley 858ea844a1aSMatthew Knepley /*@ 859ea844a1aSMatthew Knepley PetscSectionGetFieldDof - Return the number of degrees of freedom associated with a field on a given point. 860ea844a1aSMatthew Knepley 86140750d41SVaclav Hapla Not Collective 862ea844a1aSMatthew Knepley 863ea844a1aSMatthew Knepley Input Parameters: 864cab54364SBarry Smith + s - the `PetscSection` 865ea844a1aSMatthew Knepley . point - the point 866ea844a1aSMatthew Knepley - field - the field 867ea844a1aSMatthew Knepley 868ea844a1aSMatthew Knepley Output Parameter: 869ea844a1aSMatthew Knepley . numDof - the number of dof 870ea844a1aSMatthew Knepley 871ea844a1aSMatthew Knepley Level: intermediate 872ea844a1aSMatthew Knepley 873cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldDof()`, `PetscSectionCreate()` 874ea844a1aSMatthew Knepley @*/ 875d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldDof(PetscSection s, PetscInt point, PetscInt field, PetscInt *numDof) 876d71ae5a4SJacob Faibussowitsch { 877ea844a1aSMatthew Knepley PetscFunctionBegin; 878ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 8792abc8c78SJacob Faibussowitsch PetscValidIntPointer(numDof, 4); 8802abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 8819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s->field[field], point, numDof)); 882ea844a1aSMatthew Knepley PetscFunctionReturn(0); 883ea844a1aSMatthew Knepley } 884ea844a1aSMatthew Knepley 885ea844a1aSMatthew Knepley /*@ 886ea844a1aSMatthew Knepley PetscSectionSetFieldDof - Sets the number of degrees of freedom associated with a field on a given point. 887ea844a1aSMatthew Knepley 88840750d41SVaclav Hapla Not Collective 889ea844a1aSMatthew Knepley 890ea844a1aSMatthew Knepley Input Parameters: 891cab54364SBarry Smith + s - the `PetscSection` 892ea844a1aSMatthew Knepley . point - the point 893ea844a1aSMatthew Knepley . field - the field 894ea844a1aSMatthew Knepley - numDof - the number of dof 895ea844a1aSMatthew Knepley 896ea844a1aSMatthew Knepley Level: intermediate 897ea844a1aSMatthew Knepley 898cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldDof()`, `PetscSectionCreate()` 899ea844a1aSMatthew Knepley @*/ 900d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof) 901d71ae5a4SJacob Faibussowitsch { 902ea844a1aSMatthew Knepley PetscFunctionBegin; 903ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 9042abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 9059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(s->field[field], point, numDof)); 906ea844a1aSMatthew Knepley PetscFunctionReturn(0); 907ea844a1aSMatthew Knepley } 908ea844a1aSMatthew Knepley 909ea844a1aSMatthew Knepley /*@ 910ea844a1aSMatthew Knepley PetscSectionAddFieldDof - Adds a number of degrees of freedom associated with a field on a given point. 911ea844a1aSMatthew Knepley 91240750d41SVaclav Hapla Not Collective 913ea844a1aSMatthew Knepley 914ea844a1aSMatthew Knepley Input Parameters: 915cab54364SBarry Smith + s - the `PetscSection` 916ea844a1aSMatthew Knepley . point - the point 917ea844a1aSMatthew Knepley . field - the field 918ea844a1aSMatthew Knepley - numDof - the number of dof 919ea844a1aSMatthew Knepley 920ea844a1aSMatthew Knepley Level: intermediate 921ea844a1aSMatthew Knepley 922cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetFieldDof()`, `PetscSectionGetFieldDof()`, `PetscSectionCreate()` 923ea844a1aSMatthew Knepley @*/ 924d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionAddFieldDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof) 925d71ae5a4SJacob Faibussowitsch { 926ea844a1aSMatthew Knepley PetscFunctionBegin; 927ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 9282abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 9299566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(s->field[field], point, numDof)); 930ea844a1aSMatthew Knepley PetscFunctionReturn(0); 931ea844a1aSMatthew Knepley } 932ea844a1aSMatthew Knepley 933ea844a1aSMatthew Knepley /*@ 934ea844a1aSMatthew Knepley PetscSectionGetConstraintDof - Return the number of constrained degrees of freedom associated with a given point. 935ea844a1aSMatthew Knepley 93640750d41SVaclav Hapla Not Collective 937ea844a1aSMatthew Knepley 938ea844a1aSMatthew Knepley Input Parameters: 939cab54364SBarry Smith + s - the `PetscSection` 940ea844a1aSMatthew Knepley - point - the point 941ea844a1aSMatthew Knepley 942ea844a1aSMatthew Knepley Output Parameter: 943ea844a1aSMatthew Knepley . numDof - the number of dof which are fixed by constraints 944ea844a1aSMatthew Knepley 945ea844a1aSMatthew Knepley Level: intermediate 946ea844a1aSMatthew Knepley 947cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetConstraintDof()`, `PetscSectionCreate()` 948ea844a1aSMatthew Knepley @*/ 949d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetConstraintDof(PetscSection s, PetscInt point, PetscInt *numDof) 950d71ae5a4SJacob Faibussowitsch { 951ea844a1aSMatthew Knepley PetscFunctionBegin; 952ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 953dadcf809SJacob Faibussowitsch PetscValidIntPointer(numDof, 3); 954ea844a1aSMatthew Knepley if (s->bc) { 9559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s->bc, point, numDof)); 956ea844a1aSMatthew Knepley } else *numDof = 0; 957ea844a1aSMatthew Knepley PetscFunctionReturn(0); 958ea844a1aSMatthew Knepley } 959ea844a1aSMatthew Knepley 960ea844a1aSMatthew Knepley /*@ 961ea844a1aSMatthew Knepley PetscSectionSetConstraintDof - Set the number of constrained degrees of freedom associated with a given point. 962ea844a1aSMatthew Knepley 96340750d41SVaclav Hapla Not Collective 964ea844a1aSMatthew Knepley 965ea844a1aSMatthew Knepley Input Parameters: 966cab54364SBarry Smith + s - the `PetscSection` 967ea844a1aSMatthew Knepley . point - the point 968ea844a1aSMatthew Knepley - numDof - the number of dof which are fixed by constraints 969ea844a1aSMatthew Knepley 970ea844a1aSMatthew Knepley Level: intermediate 971ea844a1aSMatthew Knepley 972cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetDof()`, `PetscSectionGetConstraintDof()`, `PetscSectionCreate()` 973ea844a1aSMatthew Knepley @*/ 974d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetConstraintDof(PetscSection s, PetscInt point, PetscInt numDof) 975d71ae5a4SJacob Faibussowitsch { 976ea844a1aSMatthew Knepley PetscFunctionBegin; 977ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 978ea844a1aSMatthew Knepley if (numDof) { 9797c0883d5SVaclav Hapla PetscCall(PetscSectionCheckConstraints_Private(s)); 9809566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(s->bc, point, numDof)); 981ea844a1aSMatthew Knepley } 982ea844a1aSMatthew Knepley PetscFunctionReturn(0); 983ea844a1aSMatthew Knepley } 984ea844a1aSMatthew Knepley 985ea844a1aSMatthew Knepley /*@ 986ea844a1aSMatthew Knepley PetscSectionAddConstraintDof - Increment the number of constrained degrees of freedom associated with a given point. 987ea844a1aSMatthew Knepley 98840750d41SVaclav Hapla Not Collective 989ea844a1aSMatthew Knepley 990ea844a1aSMatthew Knepley Input Parameters: 991cab54364SBarry Smith + s - the `PetscSection` 992ea844a1aSMatthew Knepley . point - the point 993ea844a1aSMatthew Knepley - numDof - the number of additional dof which are fixed by constraints 994ea844a1aSMatthew Knepley 995ea844a1aSMatthew Knepley Level: intermediate 996ea844a1aSMatthew Knepley 997cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionAddDof()`, `PetscSectionGetConstraintDof()`, `PetscSectionCreate()` 998ea844a1aSMatthew Knepley @*/ 999d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionAddConstraintDof(PetscSection s, PetscInt point, PetscInt numDof) 1000d71ae5a4SJacob Faibussowitsch { 1001ea844a1aSMatthew Knepley PetscFunctionBegin; 1002ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1003ea844a1aSMatthew Knepley if (numDof) { 10047c0883d5SVaclav Hapla PetscCall(PetscSectionCheckConstraints_Private(s)); 10059566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(s->bc, point, numDof)); 1006ea844a1aSMatthew Knepley } 1007ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1008ea844a1aSMatthew Knepley } 1009ea844a1aSMatthew Knepley 1010ea844a1aSMatthew Knepley /*@ 1011ea844a1aSMatthew Knepley PetscSectionGetFieldConstraintDof - Return the number of constrained degrees of freedom associated with a given field on a point. 1012ea844a1aSMatthew Knepley 101340750d41SVaclav Hapla Not Collective 1014ea844a1aSMatthew Knepley 1015ea844a1aSMatthew Knepley Input Parameters: 1016cab54364SBarry Smith + s - the `PetscSection` 1017ea844a1aSMatthew Knepley . point - the point 1018ea844a1aSMatthew Knepley - field - the field 1019ea844a1aSMatthew Knepley 1020ea844a1aSMatthew Knepley Output Parameter: 1021ea844a1aSMatthew Knepley . numDof - the number of dof which are fixed by constraints 1022ea844a1aSMatthew Knepley 1023ea844a1aSMatthew Knepley Level: intermediate 1024ea844a1aSMatthew Knepley 1025cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetFieldConstraintDof()`, `PetscSectionCreate()` 1026ea844a1aSMatthew Knepley @*/ 1027d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldConstraintDof(PetscSection s, PetscInt point, PetscInt field, PetscInt *numDof) 1028d71ae5a4SJacob Faibussowitsch { 1029ea844a1aSMatthew Knepley PetscFunctionBegin; 1030ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 10312abc8c78SJacob Faibussowitsch PetscValidIntPointer(numDof, 4); 10322abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 10339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s->field[field], point, numDof)); 1034ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1035ea844a1aSMatthew Knepley } 1036ea844a1aSMatthew Knepley 1037ea844a1aSMatthew Knepley /*@ 1038ea844a1aSMatthew Knepley PetscSectionSetFieldConstraintDof - Set the number of constrained degrees of freedom associated with a given field on a point. 1039ea844a1aSMatthew Knepley 104040750d41SVaclav Hapla Not Collective 1041ea844a1aSMatthew Knepley 1042ea844a1aSMatthew Knepley Input Parameters: 1043cab54364SBarry Smith + s - the `PetscSection` 1044ea844a1aSMatthew Knepley . point - the point 1045ea844a1aSMatthew Knepley . field - the field 1046ea844a1aSMatthew Knepley - numDof - the number of dof which are fixed by constraints 1047ea844a1aSMatthew Knepley 1048ea844a1aSMatthew Knepley Level: intermediate 1049ea844a1aSMatthew Knepley 1050cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetDof()`, `PetscSectionGetFieldConstraintDof()`, `PetscSectionCreate()` 1051ea844a1aSMatthew Knepley @*/ 1052d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldConstraintDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof) 1053d71ae5a4SJacob Faibussowitsch { 1054ea844a1aSMatthew Knepley PetscFunctionBegin; 1055ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 10562abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 10579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintDof(s->field[field], point, numDof)); 1058ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1059ea844a1aSMatthew Knepley } 1060ea844a1aSMatthew Knepley 1061ea844a1aSMatthew Knepley /*@ 1062ea844a1aSMatthew Knepley PetscSectionAddFieldConstraintDof - Increment the number of constrained degrees of freedom associated with a given field on a point. 1063ea844a1aSMatthew Knepley 106440750d41SVaclav Hapla Not Collective 1065ea844a1aSMatthew Knepley 1066ea844a1aSMatthew Knepley Input Parameters: 1067cab54364SBarry Smith + s - the `PetscSection` 1068ea844a1aSMatthew Knepley . point - the point 1069ea844a1aSMatthew Knepley . field - the field 1070ea844a1aSMatthew Knepley - numDof - the number of additional dof which are fixed by constraints 1071ea844a1aSMatthew Knepley 1072ea844a1aSMatthew Knepley Level: intermediate 1073ea844a1aSMatthew Knepley 1074cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionAddDof()`, `PetscSectionGetFieldConstraintDof()`, `PetscSectionCreate()` 1075ea844a1aSMatthew Knepley @*/ 1076d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionAddFieldConstraintDof(PetscSection s, PetscInt point, PetscInt field, PetscInt numDof) 1077d71ae5a4SJacob Faibussowitsch { 1078ea844a1aSMatthew Knepley PetscFunctionBegin; 1079ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 10802abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 10819566063dSJacob Faibussowitsch PetscCall(PetscSectionAddConstraintDof(s->field[field], point, numDof)); 1082ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1083ea844a1aSMatthew Knepley } 1084ea844a1aSMatthew Knepley 1085ea844a1aSMatthew Knepley /*@ 1086ea844a1aSMatthew Knepley PetscSectionSetUpBC - Setup the subsections describing boundary conditions. 1087ea844a1aSMatthew Knepley 108840750d41SVaclav Hapla Not Collective 1089ea844a1aSMatthew Knepley 1090ea844a1aSMatthew Knepley Input Parameter: 1091cab54364SBarry Smith . s - the `PetscSection` 1092ea844a1aSMatthew Knepley 1093ea844a1aSMatthew Knepley Level: advanced 1094ea844a1aSMatthew Knepley 1095cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSetUp()`, `PetscSectionCreate()` 1096ea844a1aSMatthew Knepley @*/ 1097d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetUpBC(PetscSection s) 1098d71ae5a4SJacob Faibussowitsch { 1099ea844a1aSMatthew Knepley PetscFunctionBegin; 1100ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1101ea844a1aSMatthew Knepley if (s->bc) { 1102ea844a1aSMatthew Knepley const PetscInt last = (s->bc->pEnd - s->bc->pStart) - 1; 1103ea844a1aSMatthew Knepley 11049566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(s->bc)); 11058da24d32SBarry Smith PetscCall(PetscMalloc1((last >= 0 ? s->bc->atlasOff[last] + s->bc->atlasDof[last] : 0), &s->bcIndices)); 1106ea844a1aSMatthew Knepley } 1107ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1108ea844a1aSMatthew Knepley } 1109ea844a1aSMatthew Knepley 1110ea844a1aSMatthew Knepley /*@ 1111ea844a1aSMatthew Knepley PetscSectionSetUp - Calculate offsets based upon the number of degrees of freedom for each point. 1112ea844a1aSMatthew Knepley 111340750d41SVaclav Hapla Not Collective 1114ea844a1aSMatthew Knepley 1115ea844a1aSMatthew Knepley Input Parameter: 1116cab54364SBarry Smith . s - the `PetscSection` 1117ea844a1aSMatthew Knepley 1118ea844a1aSMatthew Knepley Level: intermediate 1119ea844a1aSMatthew Knepley 1120cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()` 1121ea844a1aSMatthew Knepley @*/ 1122d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetUp(PetscSection s) 1123d71ae5a4SJacob Faibussowitsch { 1124ea844a1aSMatthew Knepley const PetscInt *pind = NULL; 1125ea844a1aSMatthew Knepley PetscInt offset = 0, foff, p, f; 1126ea844a1aSMatthew Knepley 1127ea844a1aSMatthew Knepley PetscFunctionBegin; 1128ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1129ea844a1aSMatthew Knepley if (s->setup) PetscFunctionReturn(0); 1130ea844a1aSMatthew Knepley s->setup = PETSC_TRUE; 1131ea844a1aSMatthew Knepley /* Set offsets and field offsets for all points */ 1132ea844a1aSMatthew Knepley /* Assume that all fields have the same chart */ 113328b400f6SJacob Faibussowitsch PetscCheck(s->includesConstraints, PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSectionSetUp is currently unsupported for includesConstraints = PETSC_TRUE"); 11349566063dSJacob Faibussowitsch if (s->perm) PetscCall(ISGetIndices(s->perm, &pind)); 1135ea844a1aSMatthew Knepley if (s->pointMajor) { 1136ea844a1aSMatthew Knepley for (p = 0; p < s->pEnd - s->pStart; ++p) { 1137ea844a1aSMatthew Knepley const PetscInt q = pind ? pind[p] : p; 1138ea844a1aSMatthew Knepley 1139ea844a1aSMatthew Knepley /* Set point offset */ 1140ea844a1aSMatthew Knepley s->atlasOff[q] = offset; 1141ea844a1aSMatthew Knepley offset += s->atlasDof[q]; 1142ea844a1aSMatthew Knepley /* Set field offset */ 1143ea844a1aSMatthew Knepley for (f = 0, foff = s->atlasOff[q]; f < s->numFields; ++f) { 1144ea844a1aSMatthew Knepley PetscSection sf = s->field[f]; 1145ea844a1aSMatthew Knepley 1146ea844a1aSMatthew Knepley sf->atlasOff[q] = foff; 1147ea844a1aSMatthew Knepley foff += sf->atlasDof[q]; 1148ea844a1aSMatthew Knepley } 1149ea844a1aSMatthew Knepley } 1150ea844a1aSMatthew Knepley } else { 1151ea844a1aSMatthew Knepley /* Set field offsets for all points */ 1152ea844a1aSMatthew Knepley for (f = 0; f < s->numFields; ++f) { 1153ea844a1aSMatthew Knepley PetscSection sf = s->field[f]; 1154ea844a1aSMatthew Knepley 1155ea844a1aSMatthew Knepley for (p = 0; p < s->pEnd - s->pStart; ++p) { 1156ea844a1aSMatthew Knepley const PetscInt q = pind ? pind[p] : p; 1157ea844a1aSMatthew Knepley 1158ea844a1aSMatthew Knepley sf->atlasOff[q] = offset; 1159ea844a1aSMatthew Knepley offset += sf->atlasDof[q]; 1160ea844a1aSMatthew Knepley } 1161ea844a1aSMatthew Knepley } 1162ea844a1aSMatthew Knepley /* Disable point offsets since these are unused */ 1163ad540459SPierre Jolivet for (p = 0; p < s->pEnd - s->pStart; ++p) s->atlasOff[p] = -1; 1164ea844a1aSMatthew Knepley } 11659566063dSJacob Faibussowitsch if (s->perm) PetscCall(ISRestoreIndices(s->perm, &pind)); 1166ea844a1aSMatthew Knepley /* Setup BC sections */ 11679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUpBC(s)); 11689566063dSJacob Faibussowitsch for (f = 0; f < s->numFields; ++f) PetscCall(PetscSectionSetUpBC(s->field[f])); 1169ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1170ea844a1aSMatthew Knepley } 1171ea844a1aSMatthew Knepley 1172ea844a1aSMatthew Knepley /*@ 1173ea844a1aSMatthew Knepley PetscSectionGetMaxDof - Return the maximum number of degrees of freedom on any point in the chart 1174ea844a1aSMatthew Knepley 117540750d41SVaclav Hapla Not Collective 1176ea844a1aSMatthew Knepley 1177ea844a1aSMatthew Knepley Input Parameters: 1178cab54364SBarry Smith . s - the `PetscSection` 1179ea844a1aSMatthew Knepley 1180ea844a1aSMatthew Knepley Output Parameter: 1181ea844a1aSMatthew Knepley . maxDof - the maximum dof 1182ea844a1aSMatthew Knepley 1183ea844a1aSMatthew Knepley Level: intermediate 1184ea844a1aSMatthew Knepley 1185cab54364SBarry Smith Note: 1186cab54364SBarry Smith The returned number is up-to-date without need for `PetscSectionSetUp()`. 118769c11d05SVaclav Hapla 1188cab54364SBarry Smith Developer Note: 118969c11d05SVaclav Hapla The returned number is calculated lazily and stashed. 1190cab54364SBarry Smith 1191cab54364SBarry Smith A call to `PetscSectionInvalidateMaxDof_Internal()` invalidates the stashed value. 1192cab54364SBarry Smith 1193cab54364SBarry Smith `PetscSectionInvalidateMaxDof_Internal()` is called in `PetscSectionSetDof()`, `PetscSectionAddDof()` and `PetscSectionReset()` 1194cab54364SBarry Smith 119569c11d05SVaclav Hapla It should also be called every time atlasDof is modified directly. 119669c11d05SVaclav Hapla 1197cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetDof()`, `PetscSectionSetDof()`, `PetscSectionAddDof()`, `PetscSectionCreate()` 1198ea844a1aSMatthew Knepley @*/ 1199d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetMaxDof(PetscSection s, PetscInt *maxDof) 1200d71ae5a4SJacob Faibussowitsch { 120169c11d05SVaclav Hapla PetscInt p; 120269c11d05SVaclav Hapla 1203ea844a1aSMatthew Knepley PetscFunctionBegin; 1204ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1205dadcf809SJacob Faibussowitsch PetscValidIntPointer(maxDof, 2); 120669c11d05SVaclav Hapla if (s->maxDof == PETSC_MIN_INT) { 120769c11d05SVaclav Hapla s->maxDof = 0; 1208ad540459SPierre Jolivet for (p = 0; p < s->pEnd - s->pStart; ++p) s->maxDof = PetscMax(s->maxDof, s->atlasDof[p]); 120969c11d05SVaclav Hapla } 1210ea844a1aSMatthew Knepley *maxDof = s->maxDof; 1211ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1212ea844a1aSMatthew Knepley } 1213ea844a1aSMatthew Knepley 1214ea844a1aSMatthew Knepley /*@ 1215ea844a1aSMatthew Knepley PetscSectionGetStorageSize - Return the size of an array or local Vec capable of holding all the degrees of freedom. 1216ea844a1aSMatthew Knepley 121740750d41SVaclav Hapla Not Collective 1218ea844a1aSMatthew Knepley 1219ea844a1aSMatthew Knepley Input Parameter: 1220cab54364SBarry Smith . s - the `PetscSection` 1221ea844a1aSMatthew Knepley 1222ea844a1aSMatthew Knepley Output Parameter: 1223ea844a1aSMatthew Knepley . size - the size of an array which can hold all the dofs 1224ea844a1aSMatthew Knepley 1225ea844a1aSMatthew Knepley Level: intermediate 1226ea844a1aSMatthew Knepley 1227cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionGetConstrainedStorageSize()`, `PetscSectionCreate()` 1228ea844a1aSMatthew Knepley @*/ 1229d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetStorageSize(PetscSection s, PetscInt *size) 1230d71ae5a4SJacob Faibussowitsch { 1231ea844a1aSMatthew Knepley PetscInt p, n = 0; 1232ea844a1aSMatthew Knepley 1233ea844a1aSMatthew Knepley PetscFunctionBegin; 1234ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1235dadcf809SJacob Faibussowitsch PetscValidIntPointer(size, 2); 1236ea844a1aSMatthew Knepley for (p = 0; p < s->pEnd - s->pStart; ++p) n += s->atlasDof[p] > 0 ? s->atlasDof[p] : 0; 1237ea844a1aSMatthew Knepley *size = n; 1238ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1239ea844a1aSMatthew Knepley } 1240ea844a1aSMatthew Knepley 1241ea844a1aSMatthew Knepley /*@ 1242cab54364SBarry Smith PetscSectionGetConstrainedStorageSize - Return the size of an array or local `Vec` capable of holding all unconstrained degrees of freedom. 1243ea844a1aSMatthew Knepley 124440750d41SVaclav Hapla Not Collective 1245ea844a1aSMatthew Knepley 1246064ec1f3Sprj- Input Parameter: 1247cab54364SBarry Smith . s - the `PetscSection` 1248ea844a1aSMatthew Knepley 1249ea844a1aSMatthew Knepley Output Parameter: 1250ea844a1aSMatthew Knepley . size - the size of an array which can hold all unconstrained dofs 1251ea844a1aSMatthew Knepley 1252ea844a1aSMatthew Knepley Level: intermediate 1253ea844a1aSMatthew Knepley 1254cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetStorageSize()`, `PetscSectionGetOffset()`, `PetscSectionCreate()` 1255ea844a1aSMatthew Knepley @*/ 1256d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetConstrainedStorageSize(PetscSection s, PetscInt *size) 1257d71ae5a4SJacob Faibussowitsch { 1258ea844a1aSMatthew Knepley PetscInt p, n = 0; 1259ea844a1aSMatthew Knepley 1260ea844a1aSMatthew Knepley PetscFunctionBegin; 1261ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1262dadcf809SJacob Faibussowitsch PetscValidIntPointer(size, 2); 1263ea844a1aSMatthew Knepley for (p = 0; p < s->pEnd - s->pStart; ++p) { 1264ea844a1aSMatthew Knepley const PetscInt cdof = s->bc ? s->bc->atlasDof[p] : 0; 1265ea844a1aSMatthew Knepley n += s->atlasDof[p] > 0 ? s->atlasDof[p] - cdof : 0; 1266ea844a1aSMatthew Knepley } 1267ea844a1aSMatthew Knepley *size = n; 1268ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1269ea844a1aSMatthew Knepley } 1270ea844a1aSMatthew Knepley 1271ea844a1aSMatthew Knepley /*@ 1272ea844a1aSMatthew Knepley PetscSectionCreateGlobalSection - Create a section describing the global field layout using 1273cab54364SBarry Smith the local section and a `PetscSF` describing the section point overlap. 1274ea844a1aSMatthew Knepley 1275ea844a1aSMatthew Knepley Input Parameters: 1276cab54364SBarry Smith + s - The `PetscSection` for the local field layout 1277cab54364SBarry Smith . sf - The `PetscSF` describing parallel layout of the section points (leaves are unowned local points) 1278cab54364SBarry Smith . includeConstraints - By default this is `PETSC_FALSE`, meaning that the global field vector will not possess constrained dofs 1279cab54364SBarry Smith - localOffsets - If `PETSC_TRUE`, use local rather than global offsets for the points 1280ea844a1aSMatthew Knepley 1281ea844a1aSMatthew Knepley Output Parameter: 1282cab54364SBarry Smith . gsection - The `PetscSection` for the global field layout 1283ea844a1aSMatthew Knepley 1284ea844a1aSMatthew Knepley Level: intermediate 1285ea844a1aSMatthew Knepley 1286cab54364SBarry Smith Note: 1287cab54364SBarry Smith This gives negative sizes and offsets to points not owned by this process 1288cab54364SBarry Smith 1289cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()` 1290ea844a1aSMatthew Knepley @*/ 1291d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateGlobalSection(PetscSection s, PetscSF sf, PetscBool includeConstraints, PetscBool localOffsets, PetscSection *gsection) 1292d71ae5a4SJacob Faibussowitsch { 1293ea844a1aSMatthew Knepley PetscSection gs; 1294ea844a1aSMatthew Knepley const PetscInt *pind = NULL; 1295ea844a1aSMatthew Knepley PetscInt *recv = NULL, *neg = NULL; 1296046d2115Sksagiyam PetscInt pStart, pEnd, p, dof, cdof, off, foff, globalOff = 0, nroots, nlocal, maxleaf; 1297046d2115Sksagiyam PetscInt numFields, f, numComponents; 1298ea844a1aSMatthew Knepley 1299ea844a1aSMatthew Knepley PetscFunctionBegin; 1300ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1301ea844a1aSMatthew Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 1302ea844a1aSMatthew Knepley PetscValidLogicalCollectiveBool(s, includeConstraints, 3); 1303ea844a1aSMatthew Knepley PetscValidLogicalCollectiveBool(s, localOffsets, 4); 1304ea844a1aSMatthew Knepley PetscValidPointer(gsection, 5); 130528b400f6SJacob Faibussowitsch PetscCheck(s->pointMajor, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for field major ordering"); 13069566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), &gs)); 13079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &numFields)); 13089566063dSJacob Faibussowitsch if (numFields > 0) PetscCall(PetscSectionSetNumFields(gs, numFields)); 13099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 13109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(gs, pStart, pEnd)); 131187e637c6Sksagiyam gs->includesConstraints = includeConstraints; 13129566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 1313ea844a1aSMatthew Knepley nlocal = nroots; /* The local/leaf space matches global/root space */ 1314ea844a1aSMatthew Knepley /* Must allocate for all points visible to SF, which may be more than this section */ 1315ea844a1aSMatthew Knepley if (nroots >= 0) { /* nroots < 0 means that the graph has not been set, only happens in serial */ 13169566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, NULL, &maxleaf)); 131708401ef6SPierre Jolivet PetscCheck(nroots >= pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "SF roots %" PetscInt_FMT " < pEnd %" PetscInt_FMT, nroots, pEnd); 131808401ef6SPierre Jolivet PetscCheck(maxleaf < nroots, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Max local leaf %" PetscInt_FMT " >= nroots %" PetscInt_FMT, maxleaf, nroots); 13199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &neg, nlocal, &recv)); 13209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(neg, nroots)); 1321ea844a1aSMatthew Knepley } 1322ea844a1aSMatthew Knepley /* Mark all local points with negative dof */ 1323ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 13249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 13259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(gs, p, dof)); 13269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 13279566063dSJacob Faibussowitsch if (!includeConstraints && cdof > 0) PetscCall(PetscSectionSetConstraintDof(gs, p, cdof)); 1328ea844a1aSMatthew Knepley if (neg) neg[p] = -(dof + 1); 1329ea844a1aSMatthew Knepley } 13309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUpBC(gs)); 13319566063dSJacob Faibussowitsch if (gs->bcIndices) PetscCall(PetscArraycpy(gs->bcIndices, s->bcIndices, gs->bc->atlasOff[gs->bc->pEnd - gs->bc->pStart - 1] + gs->bc->atlasDof[gs->bc->pEnd - gs->bc->pStart - 1])); 1332ea844a1aSMatthew Knepley if (nroots >= 0) { 13339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(recv, nlocal)); 13349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, recv, MPI_REPLACE)); 13359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, recv, MPI_REPLACE)); 1336ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1337ea844a1aSMatthew Knepley if (recv[p] < 0) { 1338ea844a1aSMatthew Knepley gs->atlasDof[p - pStart] = recv[p]; 13399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 134008401ef6SPierre Jolivet PetscCheck(-(recv[p] + 1) == dof, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " is not the unconstrained %" PetscInt_FMT, -(recv[p] + 1), p, dof); 1341ea844a1aSMatthew Knepley } 1342ea844a1aSMatthew Knepley } 1343ea844a1aSMatthew Knepley } 1344ea844a1aSMatthew Knepley /* Calculate new sizes, get process offset, and calculate point offsets */ 13459566063dSJacob Faibussowitsch if (s->perm) PetscCall(ISGetIndices(s->perm, &pind)); 1346ea844a1aSMatthew Knepley for (p = 0, off = 0; p < pEnd - pStart; ++p) { 1347ea844a1aSMatthew Knepley const PetscInt q = pind ? pind[p] : p; 1348ea844a1aSMatthew Knepley 1349ea844a1aSMatthew Knepley cdof = (!includeConstraints && s->bc) ? s->bc->atlasDof[q] : 0; 1350ea844a1aSMatthew Knepley gs->atlasOff[q] = off; 1351ea844a1aSMatthew Knepley off += gs->atlasDof[q] > 0 ? gs->atlasDof[q] - cdof : 0; 1352ea844a1aSMatthew Knepley } 1353ea844a1aSMatthew Knepley if (!localOffsets) { 13549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&off, &globalOff, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)s))); 1355ea844a1aSMatthew Knepley globalOff -= off; 1356ea844a1aSMatthew Knepley } 1357ea844a1aSMatthew Knepley for (p = pStart, off = 0; p < pEnd; ++p) { 1358ea844a1aSMatthew Knepley gs->atlasOff[p - pStart] += globalOff; 1359ea844a1aSMatthew Knepley if (neg) neg[p] = -(gs->atlasOff[p - pStart] + 1); 1360ea844a1aSMatthew Knepley } 13619566063dSJacob Faibussowitsch if (s->perm) PetscCall(ISRestoreIndices(s->perm, &pind)); 1362ea844a1aSMatthew Knepley /* Put in negative offsets for ghost points */ 1363ea844a1aSMatthew Knepley if (nroots >= 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(recv, nlocal)); 13659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, recv, MPI_REPLACE)); 13669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, recv, MPI_REPLACE)); 1367ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1368ea844a1aSMatthew Knepley if (recv[p] < 0) gs->atlasOff[p - pStart] = recv[p]; 1369ea844a1aSMatthew Knepley } 1370ea844a1aSMatthew Knepley } 13719566063dSJacob Faibussowitsch PetscCall(PetscFree2(neg, recv)); 1372046d2115Sksagiyam /* Set field dofs/offsets/constraints */ 1373046d2115Sksagiyam for (f = 0; f < numFields; ++f) { 1374046d2115Sksagiyam gs->field[f]->includesConstraints = includeConstraints; 13759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &numComponents)); 13769566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(gs, f, numComponents)); 1377046d2115Sksagiyam } 1378046d2115Sksagiyam for (p = pStart; p < pEnd; ++p) { 13799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &off)); 1380046d2115Sksagiyam for (f = 0, foff = off; f < numFields; ++f) { 13819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof)); 13829566063dSJacob Faibussowitsch if (!includeConstraints && cdof > 0) PetscCall(PetscSectionSetFieldConstraintDof(gs, p, f, cdof)); 13839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 13849566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(gs, p, f, off < 0 ? -(dof + 1) : dof)); 13859566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldOffset(gs, p, f, foff)); 13869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(gs, p, f, &cdof)); 1387046d2115Sksagiyam foff = off < 0 ? foff - (dof - cdof) : foff + (dof - cdof); 1388046d2115Sksagiyam } 1389046d2115Sksagiyam } 1390046d2115Sksagiyam for (f = 0; f < numFields; ++f) { 1391046d2115Sksagiyam PetscSection gfs = gs->field[f]; 1392046d2115Sksagiyam 13939566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUpBC(gfs)); 13949566063dSJacob Faibussowitsch if (gfs->bcIndices) PetscCall(PetscArraycpy(gfs->bcIndices, s->field[f]->bcIndices, gfs->bc->atlasOff[gfs->bc->pEnd - gfs->bc->pStart - 1] + gfs->bc->atlasDof[gfs->bc->pEnd - gfs->bc->pStart - 1])); 1395046d2115Sksagiyam } 1396046d2115Sksagiyam gs->setup = PETSC_TRUE; 13979566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(gs, NULL, "-global_section_view")); 1398ea844a1aSMatthew Knepley *gsection = gs; 1399ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1400ea844a1aSMatthew Knepley } 1401ea844a1aSMatthew Knepley 1402ea844a1aSMatthew Knepley /*@ 1403cab54364SBarry Smith PetscSectionCreateGlobalSectionCensored - Create a `PetscSection` describing the global field layout using 1404cab54364SBarry Smith the local section and an `PetscSF` describing the section point overlap. 1405ea844a1aSMatthew Knepley 1406ea844a1aSMatthew Knepley Input Parameters: 1407cab54364SBarry Smith + s - The `PetscSection` for the local field layout 1408cab54364SBarry Smith . sf - The `PetscSF` describing parallel layout of the section points 1409cab54364SBarry Smith . includeConstraints - By default this is `PETSC_FALSE`, meaning that the global field vector will not possess constrained dofs 1410ea844a1aSMatthew Knepley . numExcludes - The number of exclusion ranges 1411ea844a1aSMatthew Knepley - excludes - An array [start_0, end_0, start_1, end_1, ...] where there are numExcludes pairs 1412ea844a1aSMatthew Knepley 1413ea844a1aSMatthew Knepley Output Parameter: 1414cab54364SBarry Smith . gsection - The `PetscSection` for the global field layout 1415ea844a1aSMatthew Knepley 1416ea844a1aSMatthew Knepley Level: advanced 1417ea844a1aSMatthew Knepley 1418cab54364SBarry Smith Note: 1419cab54364SBarry Smith This gives negative sizes and offsets to points not owned by this process 1420cab54364SBarry Smith 1421cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()` 1422ea844a1aSMatthew Knepley @*/ 1423d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateGlobalSectionCensored(PetscSection s, PetscSF sf, PetscBool includeConstraints, PetscInt numExcludes, const PetscInt excludes[], PetscSection *gsection) 1424d71ae5a4SJacob Faibussowitsch { 1425ea844a1aSMatthew Knepley const PetscInt *pind = NULL; 1426ea844a1aSMatthew Knepley PetscInt *neg = NULL, *tmpOff = NULL; 1427ea844a1aSMatthew Knepley PetscInt pStart, pEnd, p, e, dof, cdof, off, globalOff = 0, nroots; 1428ea844a1aSMatthew Knepley 1429ea844a1aSMatthew Knepley PetscFunctionBegin; 1430ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1431ea844a1aSMatthew Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 1432ea844a1aSMatthew Knepley PetscValidPointer(gsection, 6); 14339566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), gsection)); 14349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 14359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(*gsection, pStart, pEnd)); 14369566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 1437ea844a1aSMatthew Knepley if (nroots >= 0) { 143808401ef6SPierre Jolivet PetscCheck(nroots >= pEnd - pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "PetscSF nroots %" PetscInt_FMT " < %" PetscInt_FMT " section size", nroots, pEnd - pStart); 14399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nroots, &neg)); 1440ea844a1aSMatthew Knepley if (nroots > pEnd - pStart) { 14419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nroots, &tmpOff)); 1442ea844a1aSMatthew Knepley } else { 1443ea844a1aSMatthew Knepley tmpOff = &(*gsection)->atlasDof[-pStart]; 1444ea844a1aSMatthew Knepley } 1445ea844a1aSMatthew Knepley } 1446ea844a1aSMatthew Knepley /* Mark ghost points with negative dof */ 1447ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1448ea844a1aSMatthew Knepley for (e = 0; e < numExcludes; ++e) { 1449ea844a1aSMatthew Knepley if ((p >= excludes[e * 2 + 0]) && (p < excludes[e * 2 + 1])) { 14509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*gsection, p, 0)); 1451ea844a1aSMatthew Knepley break; 1452ea844a1aSMatthew Knepley } 1453ea844a1aSMatthew Knepley } 1454ea844a1aSMatthew Knepley if (e < numExcludes) continue; 14559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 14569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*gsection, p, dof)); 14579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 14589566063dSJacob Faibussowitsch if (!includeConstraints && cdof > 0) PetscCall(PetscSectionSetConstraintDof(*gsection, p, cdof)); 1459ea844a1aSMatthew Knepley if (neg) neg[p] = -(dof + 1); 1460ea844a1aSMatthew Knepley } 14619566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUpBC(*gsection)); 1462ea844a1aSMatthew Knepley if (nroots >= 0) { 14639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE)); 14649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE)); 1465ea844a1aSMatthew Knepley if (nroots > pEnd - pStart) { 14669371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) { 14679371c9d4SSatish Balay if (tmpOff[p] < 0) (*gsection)->atlasDof[p - pStart] = tmpOff[p]; 14689371c9d4SSatish Balay } 1469ea844a1aSMatthew Knepley } 1470ea844a1aSMatthew Knepley } 1471ea844a1aSMatthew Knepley /* Calculate new sizes, get proccess offset, and calculate point offsets */ 14729566063dSJacob Faibussowitsch if (s->perm) PetscCall(ISGetIndices(s->perm, &pind)); 1473ea844a1aSMatthew Knepley for (p = 0, off = 0; p < pEnd - pStart; ++p) { 1474ea844a1aSMatthew Knepley const PetscInt q = pind ? pind[p] : p; 1475ea844a1aSMatthew Knepley 1476ea844a1aSMatthew Knepley cdof = (!includeConstraints && s->bc) ? s->bc->atlasDof[q] : 0; 1477ea844a1aSMatthew Knepley (*gsection)->atlasOff[q] = off; 1478ea844a1aSMatthew Knepley off += (*gsection)->atlasDof[q] > 0 ? (*gsection)->atlasDof[q] - cdof : 0; 1479ea844a1aSMatthew Knepley } 14809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&off, &globalOff, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)s))); 1481ea844a1aSMatthew Knepley globalOff -= off; 1482ea844a1aSMatthew Knepley for (p = 0, off = 0; p < pEnd - pStart; ++p) { 1483ea844a1aSMatthew Knepley (*gsection)->atlasOff[p] += globalOff; 1484ea844a1aSMatthew Knepley if (neg) neg[p + pStart] = -((*gsection)->atlasOff[p] + 1); 1485ea844a1aSMatthew Knepley } 14869566063dSJacob Faibussowitsch if (s->perm) PetscCall(ISRestoreIndices(s->perm, &pind)); 1487ea844a1aSMatthew Knepley /* Put in negative offsets for ghost points */ 1488ea844a1aSMatthew Knepley if (nroots >= 0) { 1489ea844a1aSMatthew Knepley if (nroots == pEnd - pStart) tmpOff = &(*gsection)->atlasOff[-pStart]; 14909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE)); 14919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, neg, tmpOff, MPI_REPLACE)); 1492ea844a1aSMatthew Knepley if (nroots > pEnd - pStart) { 14939371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) { 14949371c9d4SSatish Balay if (tmpOff[p] < 0) (*gsection)->atlasOff[p - pStart] = tmpOff[p]; 14959371c9d4SSatish Balay } 1496ea844a1aSMatthew Knepley } 1497ea844a1aSMatthew Knepley } 14989566063dSJacob Faibussowitsch if (nroots >= 0 && nroots > pEnd - pStart) PetscCall(PetscFree(tmpOff)); 14999566063dSJacob Faibussowitsch PetscCall(PetscFree(neg)); 1500ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1501ea844a1aSMatthew Knepley } 1502ea844a1aSMatthew Knepley 1503ea844a1aSMatthew Knepley /*@ 1504cab54364SBarry Smith PetscSectionGetPointLayout - Get the `PetscLayout` associated with the section points 1505ea844a1aSMatthew Knepley 1506cab54364SBarry Smith Collective 1507ea844a1aSMatthew Knepley 1508ea844a1aSMatthew Knepley Input Parameters: 1509cab54364SBarry Smith + comm - The `MPI_Comm` 1510cab54364SBarry Smith - s - The `PetscSection` 1511ea844a1aSMatthew Knepley 1512ea844a1aSMatthew Knepley Output Parameter: 1513ea844a1aSMatthew Knepley . layout - The point layout for the section 1514ea844a1aSMatthew Knepley 1515ea844a1aSMatthew Knepley Level: advanced 1516ea844a1aSMatthew Knepley 1517cab54364SBarry Smith Note: 1518cab54364SBarry Smith This is usually called for the default global section. 1519cab54364SBarry Smith 1520cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetValueLayout()`, `PetscSectionCreate()` 1521ea844a1aSMatthew Knepley @*/ 1522d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetPointLayout(MPI_Comm comm, PetscSection s, PetscLayout *layout) 1523d71ae5a4SJacob Faibussowitsch { 1524ea844a1aSMatthew Knepley PetscInt pStart, pEnd, p, localSize = 0; 1525ea844a1aSMatthew Knepley 1526ea844a1aSMatthew Knepley PetscFunctionBegin; 15279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 1528ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1529ea844a1aSMatthew Knepley PetscInt dof; 1530ea844a1aSMatthew Knepley 15319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 15329120ba30SVaclav Hapla if (dof >= 0) ++localSize; 1533ea844a1aSMatthew Knepley } 15349566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, layout)); 15359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(*layout, localSize)); 15369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(*layout, 1)); 15379566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(*layout)); 1538ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1539ea844a1aSMatthew Knepley } 1540ea844a1aSMatthew Knepley 1541ea844a1aSMatthew Knepley /*@ 1542cab54364SBarry Smith PetscSectionGetValueLayout - Get the `PetscLayout` associated with the section dofs. 1543ea844a1aSMatthew Knepley 1544cab54364SBarry Smith Collective 1545ea844a1aSMatthew Knepley 1546ea844a1aSMatthew Knepley Input Parameters: 1547cab54364SBarry Smith + comm - The `MPI_Comm` 1548cab54364SBarry Smith - s - The `PetscSection` 1549ea844a1aSMatthew Knepley 1550ea844a1aSMatthew Knepley Output Parameter: 1551ea844a1aSMatthew Knepley . layout - The dof layout for the section 1552ea844a1aSMatthew Knepley 1553ea844a1aSMatthew Knepley Level: advanced 1554ea844a1aSMatthew Knepley 1555cab54364SBarry Smith Note: 1556cab54364SBarry Smith This is usually called for the default global section. 1557cab54364SBarry Smith 1558cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetPointLayout()`, `PetscSectionCreate()` 1559ea844a1aSMatthew Knepley @*/ 1560d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetValueLayout(MPI_Comm comm, PetscSection s, PetscLayout *layout) 1561d71ae5a4SJacob Faibussowitsch { 1562ea844a1aSMatthew Knepley PetscInt pStart, pEnd, p, localSize = 0; 1563ea844a1aSMatthew Knepley 1564ea844a1aSMatthew Knepley PetscFunctionBegin; 1565ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 2); 1566ea844a1aSMatthew Knepley PetscValidPointer(layout, 3); 15679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 1568ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1569ea844a1aSMatthew Knepley PetscInt dof, cdof; 1570ea844a1aSMatthew Knepley 15719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 15729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 1573ea844a1aSMatthew Knepley if (dof - cdof > 0) localSize += dof - cdof; 1574ea844a1aSMatthew Knepley } 15759566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, layout)); 15769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(*layout, localSize)); 15779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(*layout, 1)); 15789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(*layout)); 1579ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1580ea844a1aSMatthew Knepley } 1581ea844a1aSMatthew Knepley 1582ea844a1aSMatthew Knepley /*@ 1583cab54364SBarry Smith PetscSectionGetOffset - Return the offset into an array or local `Vec` for the dof associated with the given point. 1584ea844a1aSMatthew Knepley 158540750d41SVaclav Hapla Not Collective 1586ea844a1aSMatthew Knepley 1587ea844a1aSMatthew Knepley Input Parameters: 1588cab54364SBarry Smith + s - the `PetscSection` 1589ea844a1aSMatthew Knepley - point - the point 1590ea844a1aSMatthew Knepley 1591ea844a1aSMatthew Knepley Output Parameter: 1592ea844a1aSMatthew Knepley . offset - the offset 1593ea844a1aSMatthew Knepley 1594ea844a1aSMatthew Knepley Level: intermediate 1595ea844a1aSMatthew Knepley 1596cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldOffset()`, `PetscSectionCreate()` 1597ea844a1aSMatthew Knepley @*/ 1598d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetOffset(PetscSection s, PetscInt point, PetscInt *offset) 1599d71ae5a4SJacob Faibussowitsch { 1600ea844a1aSMatthew Knepley PetscFunctionBegin; 1601ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1602dadcf809SJacob Faibussowitsch PetscValidIntPointer(offset, 3); 1603ad540459SPierre Jolivet if (PetscDefined(USE_DEBUG)) PetscCheck(!(point < s->pStart) && !(point >= s->pEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd); 1604ea844a1aSMatthew Knepley *offset = s->atlasOff[point - s->pStart]; 1605ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1606ea844a1aSMatthew Knepley } 1607ea844a1aSMatthew Knepley 1608ea844a1aSMatthew Knepley /*@ 1609cab54364SBarry Smith PetscSectionSetOffset - Set the offset into an array or local `Vec` for the dof associated with the given point. 1610ea844a1aSMatthew Knepley 161140750d41SVaclav Hapla Not Collective 1612ea844a1aSMatthew Knepley 1613ea844a1aSMatthew Knepley Input Parameters: 1614cab54364SBarry Smith + s - the `PetscSection` 1615ea844a1aSMatthew Knepley . point - the point 1616ea844a1aSMatthew Knepley - offset - the offset 1617ea844a1aSMatthew Knepley 1618ea844a1aSMatthew Knepley Level: intermediate 1619ea844a1aSMatthew Knepley 1620cab54364SBarry Smith Note: 1621cab54364SBarry Smith The user usually does not call this function, but uses `PetscSectionSetUp()` 1622cab54364SBarry Smith 1623cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldOffset()`, `PetscSectionCreate()`, `PetscSectionSetUp()` 1624ea844a1aSMatthew Knepley @*/ 1625d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetOffset(PetscSection s, PetscInt point, PetscInt offset) 1626d71ae5a4SJacob Faibussowitsch { 1627ea844a1aSMatthew Knepley PetscFunctionBegin; 1628ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 162908401ef6SPierre Jolivet PetscCheck(!(point < s->pStart) && !(point >= s->pEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Section point %" PetscInt_FMT " should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, s->pStart, s->pEnd); 1630ea844a1aSMatthew Knepley s->atlasOff[point - s->pStart] = offset; 1631ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1632ea844a1aSMatthew Knepley } 1633ea844a1aSMatthew Knepley 1634ea844a1aSMatthew Knepley /*@ 1635cab54364SBarry Smith PetscSectionGetFieldOffset - Return the offset into an array or local `Vec` for the dof associated with the given point. 1636ea844a1aSMatthew Knepley 163740750d41SVaclav Hapla Not Collective 1638ea844a1aSMatthew Knepley 1639ea844a1aSMatthew Knepley Input Parameters: 1640cab54364SBarry Smith + s - the `PetscSection` 1641ea844a1aSMatthew Knepley . point - the point 1642ea844a1aSMatthew Knepley - field - the field 1643ea844a1aSMatthew Knepley 1644ea844a1aSMatthew Knepley Output Parameter: 1645ea844a1aSMatthew Knepley . offset - the offset 1646ea844a1aSMatthew Knepley 1647ea844a1aSMatthew Knepley Level: intermediate 1648ea844a1aSMatthew Knepley 1649cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionCreate()` 1650ea844a1aSMatthew Knepley @*/ 1651d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldOffset(PetscSection s, PetscInt point, PetscInt field, PetscInt *offset) 1652d71ae5a4SJacob Faibussowitsch { 1653ea844a1aSMatthew Knepley PetscFunctionBegin; 1654ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 16552abc8c78SJacob Faibussowitsch PetscValidIntPointer(offset, 4); 16562abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 16579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s->field[field], point, offset)); 1658ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1659ea844a1aSMatthew Knepley } 1660ea844a1aSMatthew Knepley 1661ea844a1aSMatthew Knepley /*@ 1662cab54364SBarry Smith PetscSectionSetFieldOffset - Set the offset into an array or local `Vec` for the dof associated with the given field at a point. 1663ea844a1aSMatthew Knepley 166440750d41SVaclav Hapla Not Collective 1665ea844a1aSMatthew Knepley 1666ea844a1aSMatthew Knepley Input Parameters: 1667ea844a1aSMatthew Knepley + s - the PetscSection 1668ea844a1aSMatthew Knepley . point - the point 1669ea844a1aSMatthew Knepley . field - the field 1670ea844a1aSMatthew Knepley - offset - the offset 1671ea844a1aSMatthew Knepley 1672cab54364SBarry Smith Level: developer 1673ea844a1aSMatthew Knepley 1674cab54364SBarry Smith Note: 1675cab54364SBarry Smith The user usually does not call this function, but uses `PetscSectionSetUp()` 1676ea844a1aSMatthew Knepley 1677cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetFieldOffset()`, `PetscSectionSetOffset()`, `PetscSectionCreate()`, `PetscSectionSetUp()` 1678ea844a1aSMatthew Knepley @*/ 1679d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldOffset(PetscSection s, PetscInt point, PetscInt field, PetscInt offset) 1680d71ae5a4SJacob Faibussowitsch { 1681ea844a1aSMatthew Knepley PetscFunctionBegin; 1682ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 16832abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 16849566063dSJacob Faibussowitsch PetscCall(PetscSectionSetOffset(s->field[field], point, offset)); 1685ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1686ea844a1aSMatthew Knepley } 1687ea844a1aSMatthew Knepley 1688ea844a1aSMatthew Knepley /*@ 1689ea844a1aSMatthew Knepley PetscSectionGetFieldPointOffset - Return the offset on the given point for the dof associated with the given point. 1690ea844a1aSMatthew Knepley 169140750d41SVaclav Hapla Not Collective 1692ea844a1aSMatthew Knepley 1693ea844a1aSMatthew Knepley Input Parameters: 1694cab54364SBarry Smith + s - the `PetscSection` 1695ea844a1aSMatthew Knepley . point - the point 1696ea844a1aSMatthew Knepley - field - the field 1697ea844a1aSMatthew Knepley 1698ea844a1aSMatthew Knepley Output Parameter: 1699ea844a1aSMatthew Knepley . offset - the offset 1700ea844a1aSMatthew Knepley 1701ea844a1aSMatthew Knepley Level: advanced 1702ea844a1aSMatthew Knepley 1703cab54364SBarry Smith Note: 1704cab54364SBarry Smith This gives the offset on a point of the field, ignoring constraints, meaning starting at the first dof for 1705cab54364SBarry Smith this point, what number is the first dof with this field. 1706cab54364SBarry Smith 1707cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionCreate()` 1708ea844a1aSMatthew Knepley @*/ 1709d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldPointOffset(PetscSection s, PetscInt point, PetscInt field, PetscInt *offset) 1710d71ae5a4SJacob Faibussowitsch { 1711ea844a1aSMatthew Knepley PetscInt off, foff; 1712ea844a1aSMatthew Knepley 1713ea844a1aSMatthew Knepley PetscFunctionBegin; 1714ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 17152abc8c78SJacob Faibussowitsch PetscValidIntPointer(offset, 4); 17162abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 17179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, point, &off)); 17189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s->field[field], point, &foff)); 1719ea844a1aSMatthew Knepley *offset = foff - off; 1720ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1721ea844a1aSMatthew Knepley } 1722ea844a1aSMatthew Knepley 1723ea844a1aSMatthew Knepley /*@ 1724ea844a1aSMatthew Knepley PetscSectionGetOffsetRange - Return the full range of offsets [start, end) 1725ea844a1aSMatthew Knepley 172640750d41SVaclav Hapla Not Collective 1727ea844a1aSMatthew Knepley 1728ea844a1aSMatthew Knepley Input Parameter: 1729cab54364SBarry Smith . s - the `PetscSection` 1730ea844a1aSMatthew Knepley 1731ea844a1aSMatthew Knepley Output Parameters: 1732ea844a1aSMatthew Knepley + start - the minimum offset 1733ea844a1aSMatthew Knepley - end - one more than the maximum offset 1734ea844a1aSMatthew Knepley 1735ea844a1aSMatthew Knepley Level: intermediate 1736ea844a1aSMatthew Knepley 1737cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetOffset()`, `PetscSectionCreate()` 1738ea844a1aSMatthew Knepley @*/ 1739d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetOffsetRange(PetscSection s, PetscInt *start, PetscInt *end) 1740d71ae5a4SJacob Faibussowitsch { 1741ea844a1aSMatthew Knepley PetscInt os = 0, oe = 0, pStart, pEnd, p; 1742ea844a1aSMatthew Knepley 1743ea844a1aSMatthew Knepley PetscFunctionBegin; 1744ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 17459371c9d4SSatish Balay if (s->atlasOff) { 17469371c9d4SSatish Balay os = s->atlasOff[0]; 17479371c9d4SSatish Balay oe = s->atlasOff[0]; 17489371c9d4SSatish Balay } 17499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 1750ea844a1aSMatthew Knepley for (p = 0; p < pEnd - pStart; ++p) { 1751ea844a1aSMatthew Knepley PetscInt dof = s->atlasDof[p], off = s->atlasOff[p]; 1752ea844a1aSMatthew Knepley 1753ea844a1aSMatthew Knepley if (off >= 0) { 1754ea844a1aSMatthew Knepley os = PetscMin(os, off); 1755ea844a1aSMatthew Knepley oe = PetscMax(oe, off + dof); 1756ea844a1aSMatthew Knepley } 1757ea844a1aSMatthew Knepley } 1758ea844a1aSMatthew Knepley if (start) *start = os; 1759ea844a1aSMatthew Knepley if (end) *end = oe; 1760ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1761ea844a1aSMatthew Knepley } 1762ea844a1aSMatthew Knepley 1763ea844a1aSMatthew Knepley /*@ 1764ea844a1aSMatthew Knepley PetscSectionCreateSubsection - Create a new, smaller section composed of only the selected fields 1765ea844a1aSMatthew Knepley 176640750d41SVaclav Hapla Collective 1767ea844a1aSMatthew Knepley 1768d8d19677SJose E. Roman Input Parameters: 1769cab54364SBarry Smith + s - the `PetscSection` 1770ea844a1aSMatthew Knepley . len - the number of subfields 1771ea844a1aSMatthew Knepley - fields - the subfield numbers 1772ea844a1aSMatthew Knepley 1773ea844a1aSMatthew Knepley Output Parameter: 1774ea844a1aSMatthew Knepley . subs - the subsection 1775ea844a1aSMatthew Knepley 1776ea844a1aSMatthew Knepley Level: advanced 1777ea844a1aSMatthew Knepley 1778cab54364SBarry Smith Notes: 1779cab54364SBarry Smith The section offsets now refer to a new, smaller vector. 1780cab54364SBarry Smith 1781cab54364SBarry Smith This will error if a fieldnumber is out of range 1782cab54364SBarry Smith 1783cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSupersection()`, `PetscSectionCreate()` 1784ea844a1aSMatthew Knepley @*/ 1785d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateSubsection(PetscSection s, PetscInt len, const PetscInt fields[], PetscSection *subs) 1786d71ae5a4SJacob Faibussowitsch { 1787b778fa18SValeria Barra PetscInt nF, f, c, pStart, pEnd, p, maxCdof = 0; 1788ea844a1aSMatthew Knepley 1789ea844a1aSMatthew Knepley PetscFunctionBegin; 1790ea844a1aSMatthew Knepley if (!len) PetscFunctionReturn(0); 1791ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1792dadcf809SJacob Faibussowitsch PetscValidIntPointer(fields, 3); 1793ea844a1aSMatthew Knepley PetscValidPointer(subs, 4); 17949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &nF)); 179508401ef6SPierre Jolivet PetscCheck(len <= nF, PetscObjectComm((PetscObject)s), PETSC_ERR_ARG_WRONG, "Number of requested fields %" PetscInt_FMT " greater than number of fields %" PetscInt_FMT, len, nF); 17969566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), subs)); 17979566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(*subs, len)); 1798ea844a1aSMatthew Knepley for (f = 0; f < len; ++f) { 1799ea844a1aSMatthew Knepley const char *name = NULL; 1800ea844a1aSMatthew Knepley PetscInt numComp = 0; 1801ea844a1aSMatthew Knepley 18029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(s, fields[f], &name)); 18039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldName(*subs, f, name)); 18049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, fields[f], &numComp)); 18059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(*subs, f, numComp)); 1806b778fa18SValeria Barra for (c = 0; c < s->numFieldComponents[fields[f]]; ++c) { 18079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetComponentName(s, fields[f], c, &name)); 18089566063dSJacob Faibussowitsch PetscCall(PetscSectionSetComponentName(*subs, f, c, name)); 1809b778fa18SValeria Barra } 1810ea844a1aSMatthew Knepley } 18119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 18129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(*subs, pStart, pEnd)); 1813ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1814ea844a1aSMatthew Knepley PetscInt dof = 0, cdof = 0, fdof = 0, cfdof = 0; 1815ea844a1aSMatthew Knepley 1816ea844a1aSMatthew Knepley for (f = 0; f < len; ++f) { 18179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof)); 18189566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(*subs, p, f, fdof)); 18199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &cfdof)); 18209566063dSJacob Faibussowitsch if (cfdof) PetscCall(PetscSectionSetFieldConstraintDof(*subs, p, f, cfdof)); 1821ea844a1aSMatthew Knepley dof += fdof; 1822ea844a1aSMatthew Knepley cdof += cfdof; 1823ea844a1aSMatthew Knepley } 18249566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*subs, p, dof)); 18259566063dSJacob Faibussowitsch if (cdof) PetscCall(PetscSectionSetConstraintDof(*subs, p, cdof)); 1826ea844a1aSMatthew Knepley maxCdof = PetscMax(cdof, maxCdof); 1827ea844a1aSMatthew Knepley } 18289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(*subs)); 1829ea844a1aSMatthew Knepley if (maxCdof) { 1830ea844a1aSMatthew Knepley PetscInt *indices; 1831ea844a1aSMatthew Knepley 18329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxCdof, &indices)); 1833ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1834ea844a1aSMatthew Knepley PetscInt cdof; 1835ea844a1aSMatthew Knepley 18369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(*subs, p, &cdof)); 1837ea844a1aSMatthew Knepley if (cdof) { 1838ea844a1aSMatthew Knepley const PetscInt *oldIndices = NULL; 1839ea844a1aSMatthew Knepley PetscInt fdof = 0, cfdof = 0, fc, numConst = 0, fOff = 0; 1840ea844a1aSMatthew Knepley 1841ea844a1aSMatthew Knepley for (f = 0; f < len; ++f) { 18429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof)); 18439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &cfdof)); 18449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(s, p, fields[f], &oldIndices)); 18459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldConstraintIndices(*subs, p, f, oldIndices)); 18469574d0f0SMatthew G. Knepley for (fc = 0; fc < cfdof; ++fc) indices[numConst + fc] = oldIndices[fc] + fOff; 1847ea844a1aSMatthew Knepley numConst += cfdof; 1848ea844a1aSMatthew Knepley fOff += fdof; 1849ea844a1aSMatthew Knepley } 18509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintIndices(*subs, p, indices)); 1851ea844a1aSMatthew Knepley } 1852ea844a1aSMatthew Knepley } 18539566063dSJacob Faibussowitsch PetscCall(PetscFree(indices)); 1854ea844a1aSMatthew Knepley } 1855ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1856ea844a1aSMatthew Knepley } 1857ea844a1aSMatthew Knepley 1858ea844a1aSMatthew Knepley /*@ 1859ea844a1aSMatthew Knepley PetscSectionCreateSupersection - Create a new, larger section composed of the input sections 1860ea844a1aSMatthew Knepley 186140750d41SVaclav Hapla Collective 1862ea844a1aSMatthew Knepley 1863ea844a1aSMatthew Knepley Input Parameters: 1864ea844a1aSMatthew Knepley + s - the input sections 1865ea844a1aSMatthew Knepley - len - the number of input sections 1866ea844a1aSMatthew Knepley 1867ea844a1aSMatthew Knepley Output Parameter: 1868ea844a1aSMatthew Knepley . supers - the supersection 1869ea844a1aSMatthew Knepley 1870ea844a1aSMatthew Knepley Level: advanced 1871ea844a1aSMatthew Knepley 1872cab54364SBarry Smith Note: 1873cab54364SBarry Smith The section offsets now refer to a new, larger vector. 1874cab54364SBarry Smith 1875cab54364SBarry Smith Developer Note: 1876cab54364SBarry Smith Needs to explain how the sections are composed 1877cab54364SBarry Smith 1878cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSubsection()`, `PetscSectionCreate()` 1879ea844a1aSMatthew Knepley @*/ 1880d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateSupersection(PetscSection s[], PetscInt len, PetscSection *supers) 1881d71ae5a4SJacob Faibussowitsch { 1882ea844a1aSMatthew Knepley PetscInt Nf = 0, f, pStart = PETSC_MAX_INT, pEnd = 0, p, maxCdof = 0, i; 1883ea844a1aSMatthew Knepley 1884ea844a1aSMatthew Knepley PetscFunctionBegin; 1885ea844a1aSMatthew Knepley if (!len) PetscFunctionReturn(0); 1886ea844a1aSMatthew Knepley for (i = 0; i < len; ++i) { 1887ea844a1aSMatthew Knepley PetscInt nf, pStarti, pEndi; 1888ea844a1aSMatthew Knepley 18899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s[i], &nf)); 18909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s[i], &pStarti, &pEndi)); 1891ea844a1aSMatthew Knepley pStart = PetscMin(pStart, pStarti); 1892ea844a1aSMatthew Knepley pEnd = PetscMax(pEnd, pEndi); 1893ea844a1aSMatthew Knepley Nf += nf; 1894ea844a1aSMatthew Knepley } 18959566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s[0]), supers)); 18969566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(*supers, Nf)); 1897ea844a1aSMatthew Knepley for (i = 0, f = 0; i < len; ++i) { 1898b778fa18SValeria Barra PetscInt nf, fi, ci; 1899ea844a1aSMatthew Knepley 19009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s[i], &nf)); 1901ea844a1aSMatthew Knepley for (fi = 0; fi < nf; ++fi, ++f) { 1902ea844a1aSMatthew Knepley const char *name = NULL; 1903ea844a1aSMatthew Knepley PetscInt numComp = 0; 1904ea844a1aSMatthew Knepley 19059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(s[i], fi, &name)); 19069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldName(*supers, f, name)); 19079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s[i], fi, &numComp)); 19089566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(*supers, f, numComp)); 1909b778fa18SValeria Barra for (ci = 0; ci < s[i]->numFieldComponents[fi]; ++ci) { 19109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetComponentName(s[i], fi, ci, &name)); 19119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetComponentName(*supers, f, ci, name)); 1912b778fa18SValeria Barra } 1913ea844a1aSMatthew Knepley } 1914ea844a1aSMatthew Knepley } 19159566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(*supers, pStart, pEnd)); 1916ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1917ea844a1aSMatthew Knepley PetscInt dof = 0, cdof = 0; 1918ea844a1aSMatthew Knepley 1919ea844a1aSMatthew Knepley for (i = 0, f = 0; i < len; ++i) { 1920ea844a1aSMatthew Knepley PetscInt nf, fi, pStarti, pEndi; 1921ea844a1aSMatthew Knepley PetscInt fdof = 0, cfdof = 0; 1922ea844a1aSMatthew Knepley 19239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s[i], &nf)); 19249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s[i], &pStarti, &pEndi)); 1925ea844a1aSMatthew Knepley if ((p < pStarti) || (p >= pEndi)) continue; 1926ea844a1aSMatthew Knepley for (fi = 0; fi < nf; ++fi, ++f) { 19279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s[i], p, fi, &fdof)); 19289566063dSJacob Faibussowitsch PetscCall(PetscSectionAddFieldDof(*supers, p, f, fdof)); 19299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s[i], p, fi, &cfdof)); 19309566063dSJacob Faibussowitsch if (cfdof) PetscCall(PetscSectionAddFieldConstraintDof(*supers, p, f, cfdof)); 1931ea844a1aSMatthew Knepley dof += fdof; 1932ea844a1aSMatthew Knepley cdof += cfdof; 1933ea844a1aSMatthew Knepley } 1934ea844a1aSMatthew Knepley } 19359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*supers, p, dof)); 19369566063dSJacob Faibussowitsch if (cdof) PetscCall(PetscSectionSetConstraintDof(*supers, p, cdof)); 1937ea844a1aSMatthew Knepley maxCdof = PetscMax(cdof, maxCdof); 1938ea844a1aSMatthew Knepley } 19399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(*supers)); 1940ea844a1aSMatthew Knepley if (maxCdof) { 1941ea844a1aSMatthew Knepley PetscInt *indices; 1942ea844a1aSMatthew Knepley 19439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxCdof, &indices)); 1944ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 1945ea844a1aSMatthew Knepley PetscInt cdof; 1946ea844a1aSMatthew Knepley 19479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(*supers, p, &cdof)); 1948ea844a1aSMatthew Knepley if (cdof) { 1949ea844a1aSMatthew Knepley PetscInt dof, numConst = 0, fOff = 0; 1950ea844a1aSMatthew Knepley 1951ea844a1aSMatthew Knepley for (i = 0, f = 0; i < len; ++i) { 1952ea844a1aSMatthew Knepley const PetscInt *oldIndices = NULL; 1953ea844a1aSMatthew Knepley PetscInt nf, fi, pStarti, pEndi, fdof, cfdof, fc; 1954ea844a1aSMatthew Knepley 19559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s[i], &nf)); 19569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s[i], &pStarti, &pEndi)); 1957ea844a1aSMatthew Knepley if ((p < pStarti) || (p >= pEndi)) continue; 1958ea844a1aSMatthew Knepley for (fi = 0; fi < nf; ++fi, ++f) { 19599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s[i], p, fi, &fdof)); 19609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s[i], p, fi, &cfdof)); 19619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(s[i], p, fi, &oldIndices)); 1962fcd2503dSMatthew G. Knepley for (fc = 0; fc < cfdof; ++fc) indices[numConst + fc] = oldIndices[fc]; 19639566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldConstraintIndices(*supers, p, f, &indices[numConst])); 1964fcd2503dSMatthew G. Knepley for (fc = 0; fc < cfdof; ++fc) indices[numConst + fc] += fOff; 1965ea844a1aSMatthew Knepley numConst += cfdof; 1966ea844a1aSMatthew Knepley } 19679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s[i], p, &dof)); 1968ea844a1aSMatthew Knepley fOff += dof; 1969ea844a1aSMatthew Knepley } 19709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintIndices(*supers, p, indices)); 1971ea844a1aSMatthew Knepley } 1972ea844a1aSMatthew Knepley } 19739566063dSJacob Faibussowitsch PetscCall(PetscFree(indices)); 1974ea844a1aSMatthew Knepley } 1975ea844a1aSMatthew Knepley PetscFunctionReturn(0); 1976ea844a1aSMatthew Knepley } 1977ea844a1aSMatthew Knepley 1978d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateSubplexSection_Internal(PetscSection s, IS subpointMap, PetscBool renumberPoints, PetscSection *subs) 1979d71ae5a4SJacob Faibussowitsch { 1980ea844a1aSMatthew Knepley const PetscInt *points = NULL, *indices = NULL; 198141f23ed0SMatthew G. Knepley PetscInt numFields, f, c, numSubpoints = 0, pStart, pEnd, p, spStart, spEnd, subp; 1982ea844a1aSMatthew Knepley 1983ea844a1aSMatthew Knepley PetscFunctionBegin; 1984ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 1985ea844a1aSMatthew Knepley PetscValidHeaderSpecific(subpointMap, IS_CLASSID, 2); 198641f23ed0SMatthew G. Knepley PetscValidPointer(subs, 4); 19879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &numFields)); 19889566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), subs)); 19899566063dSJacob Faibussowitsch if (numFields) PetscCall(PetscSectionSetNumFields(*subs, numFields)); 1990ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 1991ea844a1aSMatthew Knepley const char *name = NULL; 1992ea844a1aSMatthew Knepley PetscInt numComp = 0; 1993ea844a1aSMatthew Knepley 19949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(s, f, &name)); 19959566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldName(*subs, f, name)); 19969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &numComp)); 19979566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(*subs, f, numComp)); 1998b778fa18SValeria Barra for (c = 0; c < s->numFieldComponents[f]; ++c) { 19999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetComponentName(s, f, c, &name)); 20009566063dSJacob Faibussowitsch PetscCall(PetscSectionSetComponentName(*subs, f, c, name)); 2001b778fa18SValeria Barra } 2002ea844a1aSMatthew Knepley } 2003ea844a1aSMatthew Knepley /* For right now, we do not try to squeeze the subchart */ 2004ea844a1aSMatthew Knepley if (subpointMap) { 20059566063dSJacob Faibussowitsch PetscCall(ISGetSize(subpointMap, &numSubpoints)); 20069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointMap, &points)); 2007ea844a1aSMatthew Knepley } 20089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 200941f23ed0SMatthew G. Knepley if (renumberPoints) { 201041f23ed0SMatthew G. Knepley spStart = 0; 201141f23ed0SMatthew G. Knepley spEnd = numSubpoints; 201241f23ed0SMatthew G. Knepley } else { 201341f23ed0SMatthew G. Knepley PetscCall(ISGetMinMax(subpointMap, &spStart, &spEnd)); 201441f23ed0SMatthew G. Knepley ++spEnd; 201541f23ed0SMatthew G. Knepley } 201641f23ed0SMatthew G. Knepley PetscCall(PetscSectionSetChart(*subs, spStart, spEnd)); 2017ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 2018ea844a1aSMatthew Knepley PetscInt dof, cdof, fdof = 0, cfdof = 0; 2019ea844a1aSMatthew Knepley 20209566063dSJacob Faibussowitsch PetscCall(PetscFindInt(p, numSubpoints, points, &subp)); 2021ea844a1aSMatthew Knepley if (subp < 0) continue; 202241f23ed0SMatthew G. Knepley if (!renumberPoints) subp = p; 2023ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 20249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &fdof)); 20259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(*subs, subp, f, fdof)); 20269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cfdof)); 20279566063dSJacob Faibussowitsch if (cfdof) PetscCall(PetscSectionSetFieldConstraintDof(*subs, subp, f, cfdof)); 2028ea844a1aSMatthew Knepley } 20299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 20309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*subs, subp, dof)); 20319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 20329566063dSJacob Faibussowitsch if (cdof) PetscCall(PetscSectionSetConstraintDof(*subs, subp, cdof)); 2033ea844a1aSMatthew Knepley } 20349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(*subs)); 2035ea844a1aSMatthew Knepley /* Change offsets to original offsets */ 2036ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 2037ea844a1aSMatthew Knepley PetscInt off, foff = 0; 2038ea844a1aSMatthew Knepley 20399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(p, numSubpoints, points, &subp)); 2040ea844a1aSMatthew Knepley if (subp < 0) continue; 204141f23ed0SMatthew G. Knepley if (!renumberPoints) subp = p; 2042ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 20439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(s, p, f, &foff)); 20449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldOffset(*subs, subp, f, foff)); 2045ea844a1aSMatthew Knepley } 20469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 20479566063dSJacob Faibussowitsch PetscCall(PetscSectionSetOffset(*subs, subp, off)); 2048ea844a1aSMatthew Knepley } 2049ea844a1aSMatthew Knepley /* Copy constraint indices */ 205041f23ed0SMatthew G. Knepley for (subp = spStart; subp < spEnd; ++subp) { 2051ea844a1aSMatthew Knepley PetscInt cdof; 2052ea844a1aSMatthew Knepley 20539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(*subs, subp, &cdof)); 2054ea844a1aSMatthew Knepley if (cdof) { 2055ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 205641f23ed0SMatthew G. Knepley PetscCall(PetscSectionGetFieldConstraintIndices(s, points[subp - spStart], f, &indices)); 20579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldConstraintIndices(*subs, subp, f, indices)); 2058ea844a1aSMatthew Knepley } 205941f23ed0SMatthew G. Knepley PetscCall(PetscSectionGetConstraintIndices(s, points[subp - spStart], &indices)); 20609566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintIndices(*subs, subp, indices)); 2061ea844a1aSMatthew Knepley } 2062ea844a1aSMatthew Knepley } 20639566063dSJacob Faibussowitsch if (subpointMap) PetscCall(ISRestoreIndices(subpointMap, &points)); 2064ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2065ea844a1aSMatthew Knepley } 2066ea844a1aSMatthew Knepley 206741f23ed0SMatthew G. Knepley /*@ 206841f23ed0SMatthew G. Knepley PetscSectionCreateSubmeshSection - Create a new, smaller section with support on the submesh 206941f23ed0SMatthew G. Knepley 207041f23ed0SMatthew G. Knepley Collective on s 207141f23ed0SMatthew G. Knepley 207241f23ed0SMatthew G. Knepley Input Parameters: 2073cab54364SBarry Smith + s - the `PetscSection` 207441f23ed0SMatthew G. Knepley - subpointMap - a sorted list of points in the original mesh which are in the submesh 207541f23ed0SMatthew G. Knepley 207641f23ed0SMatthew G. Knepley Output Parameter: 207741f23ed0SMatthew G. Knepley . subs - the subsection 207841f23ed0SMatthew G. Knepley 2079cab54364SBarry Smith Level: advanced 2080cab54364SBarry Smith 208141f23ed0SMatthew G. Knepley Note: 208241f23ed0SMatthew G. Knepley The points are renumbered from 0, and the section offsets now refer to a new, smaller vector. 208341f23ed0SMatthew G. Knepley 2084cab54364SBarry Smith Developer Note: 2085cab54364SBarry Smith The use of the term Submesh is confusing and unneeded 208641f23ed0SMatthew G. Knepley 2087cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSubdomainSection()`, `PetscSectionCreateSubsection()`, `DMPlexGetSubpointMap()`, `PetscSectionCreate()` 208841f23ed0SMatthew G. Knepley @*/ 2089d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateSubmeshSection(PetscSection s, IS subpointMap, PetscSection *subs) 2090d71ae5a4SJacob Faibussowitsch { 209141f23ed0SMatthew G. Knepley PetscFunctionBegin; 209241f23ed0SMatthew G. Knepley PetscCall(PetscSectionCreateSubplexSection_Internal(s, subpointMap, PETSC_TRUE, subs)); 209341f23ed0SMatthew G. Knepley PetscFunctionReturn(0); 209441f23ed0SMatthew G. Knepley } 209541f23ed0SMatthew G. Knepley 209641f23ed0SMatthew G. Knepley /*@ 209741f23ed0SMatthew G. Knepley PetscSectionCreateSubdomainSection - Create a new, smaller section with support on a subdomain of the mesh 209841f23ed0SMatthew G. Knepley 209941f23ed0SMatthew G. Knepley Collective on s 210041f23ed0SMatthew G. Knepley 210141f23ed0SMatthew G. Knepley Input Parameters: 2102cab54364SBarry Smith + s - the `PetscSection` 210341f23ed0SMatthew G. Knepley - subpointMap - a sorted list of points in the original mesh which are in the subdomain 210441f23ed0SMatthew G. Knepley 210541f23ed0SMatthew G. Knepley Output Parameter: 210641f23ed0SMatthew G. Knepley . subs - the subsection 210741f23ed0SMatthew G. Knepley 2108cab54364SBarry Smith Level: advanced 2109cab54364SBarry Smith 211041f23ed0SMatthew G. Knepley Note: 211141f23ed0SMatthew G. Knepley The point numbers remain the same, but the section offsets now refer to a new, smaller vector. 211241f23ed0SMatthew G. Knepley 2113cab54364SBarry Smith Developer Notes: 2114cab54364SBarry Smith It is unclear what the difference with `PetscSectionCreateSubmeshSection()` is. 211541f23ed0SMatthew G. Knepley 2116cab54364SBarry Smith The use of the term Subdomain is unneeded and confusing 2117cab54364SBarry Smith 2118cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreateSubmeshSection()`, `PetscSectionCreateSubsection()`, `DMPlexGetSubpointMap()`, `PetscSectionCreate()` 211941f23ed0SMatthew G. Knepley @*/ 2120d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionCreateSubdomainSection(PetscSection s, IS subpointMap, PetscSection *subs) 2121d71ae5a4SJacob Faibussowitsch { 212241f23ed0SMatthew G. Knepley PetscFunctionBegin; 212341f23ed0SMatthew G. Knepley PetscCall(PetscSectionCreateSubplexSection_Internal(s, subpointMap, PETSC_FALSE, subs)); 212441f23ed0SMatthew G. Knepley PetscFunctionReturn(0); 212541f23ed0SMatthew G. Knepley } 212641f23ed0SMatthew G. Knepley 2127d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSectionView_ASCII(PetscSection s, PetscViewer viewer) 2128d71ae5a4SJacob Faibussowitsch { 2129ea844a1aSMatthew Knepley PetscInt p; 2130ea844a1aSMatthew Knepley PetscMPIInt rank; 2131ea844a1aSMatthew Knepley 2132ea844a1aSMatthew Knepley PetscFunctionBegin; 21339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 21349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 21359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "Process %d:\n", rank)); 2136ea844a1aSMatthew Knepley for (p = 0; p < s->pEnd - s->pStart; ++p) { 2137ea844a1aSMatthew Knepley if ((s->bc) && (s->bc->atlasDof[p] > 0)) { 2138ea844a1aSMatthew Knepley PetscInt b; 2139ea844a1aSMatthew Knepley 21409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " (%4" PetscInt_FMT ") dim %2" PetscInt_FMT " offset %3" PetscInt_FMT " constrained", p + s->pStart, s->atlasDof[p], s->atlasOff[p])); 2141083401c6SMatthew G. Knepley if (s->bcIndices) { 214248a46eb9SPierre Jolivet for (b = 0; b < s->bc->atlasDof[p]; ++b) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " %" PetscInt_FMT, s->bcIndices[s->bc->atlasOff[p] + b])); 2143083401c6SMatthew G. Knepley } 21449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\n")); 2145ea844a1aSMatthew Knepley } else { 21469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " (%4" PetscInt_FMT ") dim %2" PetscInt_FMT " offset %3" PetscInt_FMT "\n", p + s->pStart, s->atlasDof[p], s->atlasOff[p])); 2147ea844a1aSMatthew Knepley } 2148ea844a1aSMatthew Knepley } 21499566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 21509566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 2151ea844a1aSMatthew Knepley if (s->sym) { 21529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 21539566063dSJacob Faibussowitsch PetscCall(PetscSectionSymView(s->sym, viewer)); 21549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 2155ea844a1aSMatthew Knepley } 2156ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2157ea844a1aSMatthew Knepley } 2158ea844a1aSMatthew Knepley 2159ea844a1aSMatthew Knepley /*@C 2160cab54364SBarry Smith PetscSectionViewFromOptions - View the `PetscSection` based on values in the options database 2161fe2efc57SMark 216240750d41SVaclav Hapla Collective 2163fe2efc57SMark 2164fe2efc57SMark Input Parameters: 2165fe2efc57SMark + A - the PetscSection object to view 2166cab54364SBarry Smith . obj - Optional object that provides the options prefix used for the options 2167736c3998SJose E. Roman - name - command line option 2168fe2efc57SMark 2169fe2efc57SMark Level: intermediate 2170cab54364SBarry Smith 2171cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionView`, `PetscObjectViewFromOptions()`, `PetscSectionCreate()`, `PetscSectionView()` 2172fe2efc57SMark @*/ 2173d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionViewFromOptions(PetscSection A, PetscObject obj, const char name[]) 2174d71ae5a4SJacob Faibussowitsch { 2175fe2efc57SMark PetscFunctionBegin; 2176fe2efc57SMark PetscValidHeaderSpecific(A, PETSC_SECTION_CLASSID, 1); 21779566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 2178fe2efc57SMark PetscFunctionReturn(0); 2179fe2efc57SMark } 2180fe2efc57SMark 2181fe2efc57SMark /*@C 2182cab54364SBarry Smith PetscSectionView - Views a `PetscSection` 2183ea844a1aSMatthew Knepley 218440750d41SVaclav Hapla Collective 2185ea844a1aSMatthew Knepley 2186ea844a1aSMatthew Knepley Input Parameters: 2187cab54364SBarry Smith + s - the `PetscSection` object to view 2188ea844a1aSMatthew Knepley - v - the viewer 2189ea844a1aSMatthew Knepley 2190cab54364SBarry Smith Level: beginner 2191cab54364SBarry Smith 21921ddd528eSksagiyam Note: 2193cab54364SBarry Smith `PetscSectionView()`, when viewer is of type `PETSCVIEWERHDF5`, only saves 21941ddd528eSksagiyam distribution independent data, such as dofs, offsets, constraint dofs, 21951ddd528eSksagiyam and constraint indices. Points that have negative dofs, for instance, 21961ddd528eSksagiyam are not saved as they represent points owned by other processes. 21971ddd528eSksagiyam Point numbering and rank assignment is currently not stored. 2198cab54364SBarry Smith The saved section can be loaded with `PetscSectionLoad()`. 21991ddd528eSksagiyam 2200cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`, `PetscSectionLoad()`, `PetscViewer` 2201ea844a1aSMatthew Knepley @*/ 2202d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionView(PetscSection s, PetscViewer viewer) 2203d71ae5a4SJacob Faibussowitsch { 22041ddd528eSksagiyam PetscBool isascii, ishdf5; 2205ea844a1aSMatthew Knepley PetscInt f; 2206ea844a1aSMatthew Knepley 2207ea844a1aSMatthew Knepley PetscFunctionBegin; 2208ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 22099566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)s), &viewer)); 2210ea844a1aSMatthew Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 22119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 22129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 2213ea844a1aSMatthew Knepley if (isascii) { 22149566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)s, viewer)); 2215ea844a1aSMatthew Knepley if (s->numFields) { 22169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " fields\n", s->numFields)); 2217ea844a1aSMatthew Knepley for (f = 0; f < s->numFields; ++f) { 22189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " field %" PetscInt_FMT " with %" PetscInt_FMT " components\n", f, s->numFieldComponents[f])); 22199566063dSJacob Faibussowitsch PetscCall(PetscSectionView_ASCII(s->field[f], viewer)); 2220ea844a1aSMatthew Knepley } 2221ea844a1aSMatthew Knepley } else { 22229566063dSJacob Faibussowitsch PetscCall(PetscSectionView_ASCII(s, viewer)); 2223ea844a1aSMatthew Knepley } 22241ddd528eSksagiyam } else if (ishdf5) { 22251ddd528eSksagiyam #if PetscDefined(HAVE_HDF5) 22269566063dSJacob Faibussowitsch PetscCall(PetscSectionView_HDF5_Internal(s, viewer)); 22271ddd528eSksagiyam #else 22281ddd528eSksagiyam SETERRQ(PetscObjectComm((PetscObject)s), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 22291ddd528eSksagiyam #endif 2230ea844a1aSMatthew Knepley } 2231ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2232ea844a1aSMatthew Knepley } 2233ea844a1aSMatthew Knepley 2234fde5e3acSksagiyam /*@C 2235cab54364SBarry Smith PetscSectionLoad - Loads a `PetscSection` 2236fde5e3acSksagiyam 223740750d41SVaclav Hapla Collective 2238fde5e3acSksagiyam 2239fde5e3acSksagiyam Input Parameters: 2240cab54364SBarry Smith + s - the `PetscSection` object to load 2241fde5e3acSksagiyam - v - the viewer 2242fde5e3acSksagiyam 2243cab54364SBarry Smith Level: beginner 2244cab54364SBarry Smith 2245fde5e3acSksagiyam Note: 2246cab54364SBarry Smith `PetscSectionLoad()`, when viewer is of type `PETSCVIEWERHDF5`, loads 2247cab54364SBarry Smith a section saved with `PetscSectionView()`. The number of processes 2248fde5e3acSksagiyam used here (N) does not need to be the same as that used when saving. 2249fde5e3acSksagiyam After calling this function, the chart of s on rank i will be set 2250fde5e3acSksagiyam to [0, E_i), where \sum_{i=0}^{N-1}E_i equals to the total number of 2251fde5e3acSksagiyam saved section points. 2252fde5e3acSksagiyam 2253cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionDestroy()`, `PetscSectionView()` 2254fde5e3acSksagiyam @*/ 2255d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionLoad(PetscSection s, PetscViewer viewer) 2256d71ae5a4SJacob Faibussowitsch { 2257fde5e3acSksagiyam PetscBool ishdf5; 2258fde5e3acSksagiyam 2259fde5e3acSksagiyam PetscFunctionBegin; 2260fde5e3acSksagiyam PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2261fde5e3acSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 22629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 2263fde5e3acSksagiyam if (ishdf5) { 2264fde5e3acSksagiyam #if PetscDefined(HAVE_HDF5) 22659566063dSJacob Faibussowitsch PetscCall(PetscSectionLoad_HDF5_Internal(s, viewer)); 2266fde5e3acSksagiyam PetscFunctionReturn(0); 2267fde5e3acSksagiyam #else 2268fde5e3acSksagiyam SETERRQ(PetscObjectComm((PetscObject)s), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2269fde5e3acSksagiyam #endif 227098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)s), PETSC_ERR_SUP, "Viewer type %s not yet supported for PetscSection loading", ((PetscObject)viewer)->type_name); 2271fde5e3acSksagiyam } 2272fde5e3acSksagiyam 2273d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSectionResetClosurePermutation(PetscSection section) 2274d71ae5a4SJacob Faibussowitsch { 2275c459fbc1SJed Brown PetscSectionClosurePermVal clVal; 2276c459fbc1SJed Brown 2277c459fbc1SJed Brown PetscFunctionBegin; 2278c459fbc1SJed Brown if (!section->clHash) PetscFunctionReturn(0); 2279c459fbc1SJed Brown kh_foreach_value(section->clHash, clVal, { 22809566063dSJacob Faibussowitsch PetscCall(PetscFree(clVal.perm)); 22819566063dSJacob Faibussowitsch PetscCall(PetscFree(clVal.invPerm)); 2282c459fbc1SJed Brown }); 2283c459fbc1SJed Brown kh_destroy(ClPerm, section->clHash); 2284c459fbc1SJed Brown section->clHash = NULL; 2285c459fbc1SJed Brown PetscFunctionReturn(0); 2286c459fbc1SJed Brown } 2287c459fbc1SJed Brown 2288ea844a1aSMatthew Knepley /*@ 2289ea844a1aSMatthew Knepley PetscSectionReset - Frees all section data. 2290ea844a1aSMatthew Knepley 229140750d41SVaclav Hapla Not Collective 2292ea844a1aSMatthew Knepley 2293ea844a1aSMatthew Knepley Input Parameters: 2294cab54364SBarry Smith . s - the `PetscSection` 2295ea844a1aSMatthew Knepley 2296ea844a1aSMatthew Knepley Level: beginner 2297ea844a1aSMatthew Knepley 2298cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()` 2299ea844a1aSMatthew Knepley @*/ 2300d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionReset(PetscSection s) 2301d71ae5a4SJacob Faibussowitsch { 2302b778fa18SValeria Barra PetscInt f, c; 2303ea844a1aSMatthew Knepley 2304ea844a1aSMatthew Knepley PetscFunctionBegin; 2305ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2306ea844a1aSMatthew Knepley for (f = 0; f < s->numFields; ++f) { 23079566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s->field[f])); 23089566063dSJacob Faibussowitsch PetscCall(PetscFree(s->fieldNames[f])); 230948a46eb9SPierre Jolivet for (c = 0; c < s->numFieldComponents[f]; ++c) PetscCall(PetscFree(s->compNames[f][c])); 23109566063dSJacob Faibussowitsch PetscCall(PetscFree(s->compNames[f])); 2311ea844a1aSMatthew Knepley } 23129566063dSJacob Faibussowitsch PetscCall(PetscFree(s->numFieldComponents)); 23139566063dSJacob Faibussowitsch PetscCall(PetscFree(s->fieldNames)); 23149566063dSJacob Faibussowitsch PetscCall(PetscFree(s->compNames)); 23159566063dSJacob Faibussowitsch PetscCall(PetscFree(s->field)); 23169566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s->bc)); 23179566063dSJacob Faibussowitsch PetscCall(PetscFree(s->bcIndices)); 23189566063dSJacob Faibussowitsch PetscCall(PetscFree2(s->atlasDof, s->atlasOff)); 23199566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s->clSection)); 23209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&s->clPoints)); 23219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&s->perm)); 23229566063dSJacob Faibussowitsch PetscCall(PetscSectionResetClosurePermutation(s)); 23239566063dSJacob Faibussowitsch PetscCall(PetscSectionSymDestroy(&s->sym)); 23249566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s->clSection)); 23259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&s->clPoints)); 232669c11d05SVaclav Hapla PetscCall(PetscSectionInvalidateMaxDof_Internal(s)); 2327ea844a1aSMatthew Knepley s->pStart = -1; 2328ea844a1aSMatthew Knepley s->pEnd = -1; 2329ea844a1aSMatthew Knepley s->maxDof = 0; 2330ea844a1aSMatthew Knepley s->setup = PETSC_FALSE; 2331ea844a1aSMatthew Knepley s->numFields = 0; 2332ea844a1aSMatthew Knepley s->clObj = NULL; 2333ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2334ea844a1aSMatthew Knepley } 2335ea844a1aSMatthew Knepley 2336ea844a1aSMatthew Knepley /*@ 2337ea844a1aSMatthew Knepley PetscSectionDestroy - Frees a section object and frees its range if that exists. 2338ea844a1aSMatthew Knepley 233940750d41SVaclav Hapla Not Collective 2340ea844a1aSMatthew Knepley 2341ea844a1aSMatthew Knepley Input Parameters: 2342cab54364SBarry Smith . s - the `PetscSection` 2343ea844a1aSMatthew Knepley 2344ea844a1aSMatthew Knepley Level: beginner 2345ea844a1aSMatthew Knepley 2346cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionCreate()`, `PetscSectionReset()` 2347ea844a1aSMatthew Knepley @*/ 2348d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionDestroy(PetscSection *s) 2349d71ae5a4SJacob Faibussowitsch { 2350ea844a1aSMatthew Knepley PetscFunctionBegin; 2351ea844a1aSMatthew Knepley if (!*s) PetscFunctionReturn(0); 235262f17a49SStefano Zampini PetscValidHeaderSpecific(*s, PETSC_SECTION_CLASSID, 1); 2353ea844a1aSMatthew Knepley if (--((PetscObject)(*s))->refct > 0) { 2354ea844a1aSMatthew Knepley *s = NULL; 2355ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2356ea844a1aSMatthew Knepley } 23579566063dSJacob Faibussowitsch PetscCall(PetscSectionReset(*s)); 23589566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(s)); 2359ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2360ea844a1aSMatthew Knepley } 2361ea844a1aSMatthew Knepley 2362d71ae5a4SJacob Faibussowitsch PetscErrorCode VecIntGetValuesSection(PetscInt *baseArray, PetscSection s, PetscInt point, const PetscInt **values) 2363d71ae5a4SJacob Faibussowitsch { 2364ea844a1aSMatthew Knepley const PetscInt p = point - s->pStart; 2365ea844a1aSMatthew Knepley 2366ea844a1aSMatthew Knepley PetscFunctionBegin; 2367ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 2); 2368ea844a1aSMatthew Knepley *values = &baseArray[s->atlasOff[p]]; 2369ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2370ea844a1aSMatthew Knepley } 2371ea844a1aSMatthew Knepley 2372d71ae5a4SJacob Faibussowitsch PetscErrorCode VecIntSetValuesSection(PetscInt *baseArray, PetscSection s, PetscInt point, const PetscInt values[], InsertMode mode) 2373d71ae5a4SJacob Faibussowitsch { 2374ea844a1aSMatthew Knepley PetscInt *array; 2375ea844a1aSMatthew Knepley const PetscInt p = point - s->pStart; 2376ea844a1aSMatthew Knepley const PetscInt orientation = 0; /* Needs to be included for use in closure operations */ 2377ea844a1aSMatthew Knepley PetscInt cDim = 0; 2378ea844a1aSMatthew Knepley 2379ea844a1aSMatthew Knepley PetscFunctionBegin; 2380ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 2); 23819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cDim)); 2382ea844a1aSMatthew Knepley array = &baseArray[s->atlasOff[p]]; 2383ea844a1aSMatthew Knepley if (!cDim) { 2384ea844a1aSMatthew Knepley if (orientation >= 0) { 2385ea844a1aSMatthew Knepley const PetscInt dim = s->atlasDof[p]; 2386ea844a1aSMatthew Knepley PetscInt i; 2387ea844a1aSMatthew Knepley 2388ea844a1aSMatthew Knepley if (mode == INSERT_VALUES) { 2389ea844a1aSMatthew Knepley for (i = 0; i < dim; ++i) array[i] = values[i]; 2390ea844a1aSMatthew Knepley } else { 2391ea844a1aSMatthew Knepley for (i = 0; i < dim; ++i) array[i] += values[i]; 2392ea844a1aSMatthew Knepley } 2393ea844a1aSMatthew Knepley } else { 2394ea844a1aSMatthew Knepley PetscInt offset = 0; 2395ea844a1aSMatthew Knepley PetscInt j = -1, field, i; 2396ea844a1aSMatthew Knepley 2397ea844a1aSMatthew Knepley for (field = 0; field < s->numFields; ++field) { 2398ea844a1aSMatthew Knepley const PetscInt dim = s->field[field]->atlasDof[p]; 2399ea844a1aSMatthew Knepley 2400ea844a1aSMatthew Knepley for (i = dim - 1; i >= 0; --i) array[++j] = values[i + offset]; 2401ea844a1aSMatthew Knepley offset += dim; 2402ea844a1aSMatthew Knepley } 2403ea844a1aSMatthew Knepley } 2404ea844a1aSMatthew Knepley } else { 2405ea844a1aSMatthew Knepley if (orientation >= 0) { 2406ea844a1aSMatthew Knepley const PetscInt dim = s->atlasDof[p]; 2407ea844a1aSMatthew Knepley PetscInt cInd = 0, i; 2408ea844a1aSMatthew Knepley const PetscInt *cDof; 2409ea844a1aSMatthew Knepley 24109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, point, &cDof)); 2411ea844a1aSMatthew Knepley if (mode == INSERT_VALUES) { 2412ea844a1aSMatthew Knepley for (i = 0; i < dim; ++i) { 24139371c9d4SSatish Balay if ((cInd < cDim) && (i == cDof[cInd])) { 24149371c9d4SSatish Balay ++cInd; 24159371c9d4SSatish Balay continue; 24169371c9d4SSatish Balay } 2417ea844a1aSMatthew Knepley array[i] = values[i]; 2418ea844a1aSMatthew Knepley } 2419ea844a1aSMatthew Knepley } else { 2420ea844a1aSMatthew Knepley for (i = 0; i < dim; ++i) { 24219371c9d4SSatish Balay if ((cInd < cDim) && (i == cDof[cInd])) { 24229371c9d4SSatish Balay ++cInd; 24239371c9d4SSatish Balay continue; 24249371c9d4SSatish Balay } 2425ea844a1aSMatthew Knepley array[i] += values[i]; 2426ea844a1aSMatthew Knepley } 2427ea844a1aSMatthew Knepley } 2428ea844a1aSMatthew Knepley } else { 2429ea844a1aSMatthew Knepley const PetscInt *cDof; 2430ea844a1aSMatthew Knepley PetscInt offset = 0; 2431ea844a1aSMatthew Knepley PetscInt cOffset = 0; 2432ea844a1aSMatthew Knepley PetscInt j = 0, field; 2433ea844a1aSMatthew Knepley 24349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, point, &cDof)); 2435ea844a1aSMatthew Knepley for (field = 0; field < s->numFields; ++field) { 2436ea844a1aSMatthew Knepley const PetscInt dim = s->field[field]->atlasDof[p]; /* PetscSectionGetFieldDof() */ 2437ea844a1aSMatthew Knepley const PetscInt tDim = s->field[field]->bc->atlasDof[p]; /* PetscSectionGetFieldConstraintDof() */ 2438ea844a1aSMatthew Knepley const PetscInt sDim = dim - tDim; 2439ea844a1aSMatthew Knepley PetscInt cInd = 0, i, k; 2440ea844a1aSMatthew Knepley 2441ea844a1aSMatthew Knepley for (i = 0, k = dim + offset - 1; i < dim; ++i, ++j, --k) { 24429371c9d4SSatish Balay if ((cInd < sDim) && (j == cDof[cInd + cOffset])) { 24439371c9d4SSatish Balay ++cInd; 24449371c9d4SSatish Balay continue; 24459371c9d4SSatish Balay } 2446ea844a1aSMatthew Knepley array[j] = values[k]; 2447ea844a1aSMatthew Knepley } 2448ea844a1aSMatthew Knepley offset += dim; 2449ea844a1aSMatthew Knepley cOffset += dim - tDim; 2450ea844a1aSMatthew Knepley } 2451ea844a1aSMatthew Knepley } 2452ea844a1aSMatthew Knepley } 2453ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2454ea844a1aSMatthew Knepley } 2455ea844a1aSMatthew Knepley 2456ea844a1aSMatthew Knepley /*@C 2457ea844a1aSMatthew Knepley PetscSectionHasConstraints - Determine whether a section has constrained dofs 2458ea844a1aSMatthew Knepley 245940750d41SVaclav Hapla Not Collective 2460ea844a1aSMatthew Knepley 2461ea844a1aSMatthew Knepley Input Parameter: 2462cab54364SBarry Smith . s - The `PetscSection` 2463ea844a1aSMatthew Knepley 2464ea844a1aSMatthew Knepley Output Parameter: 2465ea844a1aSMatthew Knepley . hasConstraints - flag indicating that the section has constrained dofs 2466ea844a1aSMatthew Knepley 2467ea844a1aSMatthew Knepley Level: intermediate 2468ea844a1aSMatthew Knepley 2469cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection` 2470ea844a1aSMatthew Knepley @*/ 2471d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionHasConstraints(PetscSection s, PetscBool *hasConstraints) 2472d71ae5a4SJacob Faibussowitsch { 2473ea844a1aSMatthew Knepley PetscFunctionBegin; 2474ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2475dadcf809SJacob Faibussowitsch PetscValidBoolPointer(hasConstraints, 2); 2476ea844a1aSMatthew Knepley *hasConstraints = s->bc ? PETSC_TRUE : PETSC_FALSE; 2477ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2478ea844a1aSMatthew Knepley } 2479ea844a1aSMatthew Knepley 2480ea844a1aSMatthew Knepley /*@C 2481ea844a1aSMatthew Knepley PetscSectionGetConstraintIndices - Get the point dof numbers, in [0, dof), which are constrained 2482ea844a1aSMatthew Knepley 248340750d41SVaclav Hapla Not Collective 2484ea844a1aSMatthew Knepley 2485ea844a1aSMatthew Knepley Input Parameters: 2486cab54364SBarry Smith + s - The `PetscSection` 2487ea844a1aSMatthew Knepley - point - The point 2488ea844a1aSMatthew Knepley 2489ea844a1aSMatthew Knepley Output Parameter: 2490ea844a1aSMatthew Knepley . indices - The constrained dofs 2491ea844a1aSMatthew Knepley 2492ea844a1aSMatthew Knepley Level: intermediate 2493ea844a1aSMatthew Knepley 2494cab54364SBarry Smith Fortran Note: 2495cab54364SBarry Smith Call `PetscSectionGetConstraintIndicesF90()` and `PetscSectionRestoreConstraintIndicesF90()` 2496cab54364SBarry Smith 2497cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection` 2498ea844a1aSMatthew Knepley @*/ 2499d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetConstraintIndices(PetscSection s, PetscInt point, const PetscInt **indices) 2500d71ae5a4SJacob Faibussowitsch { 2501ea844a1aSMatthew Knepley PetscFunctionBegin; 2502ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2503ea844a1aSMatthew Knepley if (s->bc) { 25049566063dSJacob Faibussowitsch PetscCall(VecIntGetValuesSection(s->bcIndices, s->bc, point, indices)); 2505ea844a1aSMatthew Knepley } else *indices = NULL; 2506ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2507ea844a1aSMatthew Knepley } 2508ea844a1aSMatthew Knepley 2509ea844a1aSMatthew Knepley /*@C 2510ea844a1aSMatthew Knepley PetscSectionSetConstraintIndices - Set the point dof numbers, in [0, dof), which are constrained 2511ea844a1aSMatthew Knepley 251240750d41SVaclav Hapla Not Collective 2513ea844a1aSMatthew Knepley 2514ea844a1aSMatthew Knepley Input Parameters: 2515cab54364SBarry Smith + s - The `PetscSection` 2516ea844a1aSMatthew Knepley . point - The point 2517ea844a1aSMatthew Knepley - indices - The constrained dofs 2518ea844a1aSMatthew Knepley 2519ea844a1aSMatthew Knepley Level: intermediate 2520ea844a1aSMatthew Knepley 2521cab54364SBarry Smith Fortran Note: 2522cab54364SBarry Smith Use `PetscSectionSetConstraintIndicesF90()` 2523cab54364SBarry Smith 2524cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionGetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection` 2525ea844a1aSMatthew Knepley @*/ 2526d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetConstraintIndices(PetscSection s, PetscInt point, const PetscInt indices[]) 2527d71ae5a4SJacob Faibussowitsch { 2528ea844a1aSMatthew Knepley PetscFunctionBegin; 2529ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2530ea844a1aSMatthew Knepley if (s->bc) { 2531d57bb9dbSMatthew G. Knepley const PetscInt dof = s->atlasDof[point]; 2532d57bb9dbSMatthew G. Knepley const PetscInt cdof = s->bc->atlasDof[point]; 2533d57bb9dbSMatthew G. Knepley PetscInt d; 2534d57bb9dbSMatthew G. Knepley 2535ad540459SPierre Jolivet for (d = 0; d < cdof; ++d) PetscCheck(indices[d] < dof, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " dof %" PetscInt_FMT ", invalid constraint index[%" PetscInt_FMT "]: %" PetscInt_FMT, point, dof, d, indices[d]); 25369566063dSJacob Faibussowitsch PetscCall(VecIntSetValuesSection(s->bcIndices, s->bc, point, indices, INSERT_VALUES)); 2537ea844a1aSMatthew Knepley } 2538ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2539ea844a1aSMatthew Knepley } 2540ea844a1aSMatthew Knepley 2541ea844a1aSMatthew Knepley /*@C 2542ea844a1aSMatthew Knepley PetscSectionGetFieldConstraintIndices - Get the field dof numbers, in [0, fdof), which are constrained 2543ea844a1aSMatthew Knepley 254440750d41SVaclav Hapla Not Collective 2545ea844a1aSMatthew Knepley 2546ea844a1aSMatthew Knepley Input Parameters: 2547cab54364SBarry Smith + s - The `PetscSection` 2548ea844a1aSMatthew Knepley . field - The field number 2549ea844a1aSMatthew Knepley - point - The point 2550ea844a1aSMatthew Knepley 2551ea844a1aSMatthew Knepley Output Parameter: 25529759eb26SJed Brown . indices - The constrained dofs sorted in ascending order 2553ea844a1aSMatthew Knepley 2554ea844a1aSMatthew Knepley Level: intermediate 2555ea844a1aSMatthew Knepley 2556cab54364SBarry Smith Note: 2557cab54364SBarry Smith The indices array, which is provided by the caller, must have capacity to hold the number of constrained dofs, e.g., as returned by `PetscSectionGetConstraintDof()`. 2558cab54364SBarry Smith 2559cab54364SBarry Smith Fortran Note: 2560cab54364SBarry Smith Call `PetscSectionGetFieldConstraintIndicesF90()` and `PetscSectionRestoreFieldConstraintIndicesF90()` 2561cab54364SBarry Smith 2562cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSetFieldConstraintIndices()`, `PetscSectionGetConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection` 2563ea844a1aSMatthew Knepley @*/ 2564d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldConstraintIndices(PetscSection s, PetscInt point, PetscInt field, const PetscInt **indices) 2565d71ae5a4SJacob Faibussowitsch { 2566ea844a1aSMatthew Knepley PetscFunctionBegin; 2567ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2568dadcf809SJacob Faibussowitsch PetscValidPointer(indices, 4); 25692abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 25709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s->field[field], point, indices)); 2571ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2572ea844a1aSMatthew Knepley } 2573ea844a1aSMatthew Knepley 2574ea844a1aSMatthew Knepley /*@C 2575ea844a1aSMatthew Knepley PetscSectionSetFieldConstraintIndices - Set the field dof numbers, in [0, fdof), which are constrained 2576ea844a1aSMatthew Knepley 257740750d41SVaclav Hapla Not Collective 2578ea844a1aSMatthew Knepley 2579ea844a1aSMatthew Knepley Input Parameters: 2580cab54364SBarry Smith + s - The `PetscSection` 2581ea844a1aSMatthew Knepley . point - The point 2582ea844a1aSMatthew Knepley . field - The field number 2583ea844a1aSMatthew Knepley - indices - The constrained dofs 2584ea844a1aSMatthew Knepley 2585ea844a1aSMatthew Knepley Level: intermediate 2586ea844a1aSMatthew Knepley 2587cab54364SBarry Smith Fortran Note: 2588cab54364SBarry Smith Use `PetscSectionSetFieldConstraintIndicesF90()` 2589cab54364SBarry Smith 2590cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSetConstraintIndices()`, `PetscSectionGetFieldConstraintIndices()`, `PetscSectionGetConstraintDof()`, `PetscSection` 2591ea844a1aSMatthew Knepley @*/ 2592d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldConstraintIndices(PetscSection s, PetscInt point, PetscInt field, const PetscInt indices[]) 2593d71ae5a4SJacob Faibussowitsch { 2594ea844a1aSMatthew Knepley PetscFunctionBegin; 2595ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 25962abc8c78SJacob Faibussowitsch if (PetscDefined(USE_DEBUG)) { 2597e2bfaee7SMatthew G. Knepley PetscInt nfdof; 25982abc8c78SJacob Faibussowitsch 25999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, point, field, &nfdof)); 2600e2bfaee7SMatthew G. Knepley if (nfdof) PetscValidIntPointer(indices, 4); 26012abc8c78SJacob Faibussowitsch } 26022abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 26039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintIndices(s->field[field], point, indices)); 2604ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2605ea844a1aSMatthew Knepley } 2606ea844a1aSMatthew Knepley 2607ea844a1aSMatthew Knepley /*@ 2608ea844a1aSMatthew Knepley PetscSectionPermute - Reorder the section according to the input point permutation 2609ea844a1aSMatthew Knepley 261040750d41SVaclav Hapla Collective 2611ea844a1aSMatthew Knepley 2612d8d19677SJose E. Roman Input Parameters: 2613cab54364SBarry Smith + section - The `PetscSection` object 2614ea844a1aSMatthew Knepley - perm - The point permutation, old point p becomes new point perm[p] 2615ea844a1aSMatthew Knepley 2616ea844a1aSMatthew Knepley Output Parameter: 2617cab54364SBarry Smith . sectionNew - The permuted `PetscSection` 2618ea844a1aSMatthew Knepley 2619ea844a1aSMatthew Knepley Level: intermediate 2620ea844a1aSMatthew Knepley 2621cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `IS`, `PetscSection`, `MatPermute()` 2622ea844a1aSMatthew Knepley @*/ 2623d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionPermute(PetscSection section, IS permutation, PetscSection *sectionNew) 2624d71ae5a4SJacob Faibussowitsch { 2625ea844a1aSMatthew Knepley PetscSection s = section, sNew; 2626ea844a1aSMatthew Knepley const PetscInt *perm; 2627b778fa18SValeria Barra PetscInt numFields, f, c, numPoints, pStart, pEnd, p; 2628ea844a1aSMatthew Knepley 2629ea844a1aSMatthew Knepley PetscFunctionBegin; 2630ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 2631ea844a1aSMatthew Knepley PetscValidHeaderSpecific(permutation, IS_CLASSID, 2); 2632ea844a1aSMatthew Knepley PetscValidPointer(sectionNew, 3); 26339566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)s), &sNew)); 26349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &numFields)); 26359566063dSJacob Faibussowitsch if (numFields) PetscCall(PetscSectionSetNumFields(sNew, numFields)); 2636ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 2637ea844a1aSMatthew Knepley const char *name; 2638ea844a1aSMatthew Knepley PetscInt numComp; 2639ea844a1aSMatthew Knepley 26409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(s, f, &name)); 26419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldName(sNew, f, name)); 26429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &numComp)); 26439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(sNew, f, numComp)); 2644b778fa18SValeria Barra for (c = 0; c < s->numFieldComponents[f]; ++c) { 26459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetComponentName(s, f, c, &name)); 26469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetComponentName(sNew, f, c, name)); 2647b778fa18SValeria Barra } 2648ea844a1aSMatthew Knepley } 26499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(permutation, &numPoints)); 26509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(permutation, &perm)); 26519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(sNew, pStart, pEnd)); 265308401ef6SPierre Jolivet PetscCheck(numPoints >= pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Permutation size %" PetscInt_FMT " is less than largest Section point %" PetscInt_FMT, numPoints, pEnd); 2654ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 2655ea844a1aSMatthew Knepley PetscInt dof, cdof; 2656ea844a1aSMatthew Knepley 26579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 26589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(sNew, perm[p], dof)); 26599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 26609566063dSJacob Faibussowitsch if (cdof) PetscCall(PetscSectionSetConstraintDof(sNew, perm[p], cdof)); 2661ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 26629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 26639566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(sNew, perm[p], f, dof)); 26649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof)); 26659566063dSJacob Faibussowitsch if (cdof) PetscCall(PetscSectionSetFieldConstraintDof(sNew, perm[p], f, cdof)); 2666ea844a1aSMatthew Knepley } 2667ea844a1aSMatthew Knepley } 26689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(sNew)); 2669ea844a1aSMatthew Knepley for (p = pStart; p < pEnd; ++p) { 2670ea844a1aSMatthew Knepley const PetscInt *cind; 2671ea844a1aSMatthew Knepley PetscInt cdof; 2672ea844a1aSMatthew Knepley 26739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 2674ea844a1aSMatthew Knepley if (cdof) { 26759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cind)); 26769566063dSJacob Faibussowitsch PetscCall(PetscSectionSetConstraintIndices(sNew, perm[p], cind)); 2677ea844a1aSMatthew Knepley } 2678ea844a1aSMatthew Knepley for (f = 0; f < numFields; ++f) { 26799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(s, p, f, &cdof)); 2680ea844a1aSMatthew Knepley if (cdof) { 26819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(s, p, f, &cind)); 26829566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldConstraintIndices(sNew, perm[p], f, cind)); 2683ea844a1aSMatthew Knepley } 2684ea844a1aSMatthew Knepley } 2685ea844a1aSMatthew Knepley } 26869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(permutation, &perm)); 2687ea844a1aSMatthew Knepley *sectionNew = sNew; 2688ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2689ea844a1aSMatthew Knepley } 2690ea844a1aSMatthew Knepley 2691ea844a1aSMatthew Knepley /*@ 2692ea844a1aSMatthew Knepley PetscSectionSetClosureIndex - Set a cache of points in the closure of each point in the section 2693ea844a1aSMatthew Knepley 269440750d41SVaclav Hapla Collective 2695ea844a1aSMatthew Knepley 2696ea844a1aSMatthew Knepley Input Parameters: 2697cab54364SBarry Smith + section - The `PetscSection` 2698cab54364SBarry Smith . obj - A `PetscObject` which serves as the key for this index 2699cab54364SBarry Smith . clSection - `PetscSection` giving the size of the closure of each point 2700cab54364SBarry Smith - clPoints - `IS` giving the points in each closure 2701ea844a1aSMatthew Knepley 2702ea844a1aSMatthew Knepley Level: advanced 2703ea844a1aSMatthew Knepley 2704cab54364SBarry Smith Note: 2705cab54364SBarry Smith We compress out closure points with no dofs in this section 2706cab54364SBarry Smith 2707cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionGetClosureIndex()`, `DMPlexCreateClosureIndex()` 2708ea844a1aSMatthew Knepley @*/ 2709d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetClosureIndex(PetscSection section, PetscObject obj, PetscSection clSection, IS clPoints) 2710d71ae5a4SJacob Faibussowitsch { 2711ea844a1aSMatthew Knepley PetscFunctionBegin; 27123e03ebd8SStefano Zampini PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 27133e03ebd8SStefano Zampini PetscValidHeaderSpecific(clSection, PETSC_SECTION_CLASSID, 3); 27143e03ebd8SStefano Zampini PetscValidHeaderSpecific(clPoints, IS_CLASSID, 4); 27159566063dSJacob Faibussowitsch if (section->clObj != obj) PetscCall(PetscSectionResetClosurePermutation(section)); 2716ea844a1aSMatthew Knepley section->clObj = obj; 27179566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)clSection)); 27189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)clPoints)); 27199566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion->clSection)); 27209566063dSJacob Faibussowitsch PetscCall(ISDestroy(§ion->clPoints)); 2721ea844a1aSMatthew Knepley section->clSection = clSection; 2722ea844a1aSMatthew Knepley section->clPoints = clPoints; 2723ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2724ea844a1aSMatthew Knepley } 2725ea844a1aSMatthew Knepley 2726ea844a1aSMatthew Knepley /*@ 2727cab54364SBarry Smith PetscSectionGetClosureIndex - Get the cache of points in the closure of each point in the section set with `PetscSectionSetClosureIndex()` 2728ea844a1aSMatthew Knepley 272940750d41SVaclav Hapla Collective 2730ea844a1aSMatthew Knepley 2731ea844a1aSMatthew Knepley Input Parameters: 2732cab54364SBarry Smith + section - The `PetscSection` 2733cab54364SBarry Smith - obj - A `PetscObject` which serves as the key for this index 2734ea844a1aSMatthew Knepley 2735ea844a1aSMatthew Knepley Output Parameters: 2736cab54364SBarry Smith + clSection - `PetscSection` giving the size of the closure of each point 2737cab54364SBarry Smith - clPoints - `IS` giving the points in each closure 2738ea844a1aSMatthew Knepley 2739ea844a1aSMatthew Knepley Level: advanced 2740ea844a1aSMatthew Knepley 2741cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSetClosureIndex()`, `DMPlexCreateClosureIndex()` 2742ea844a1aSMatthew Knepley @*/ 2743d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetClosureIndex(PetscSection section, PetscObject obj, PetscSection *clSection, IS *clPoints) 2744d71ae5a4SJacob Faibussowitsch { 2745ea844a1aSMatthew Knepley PetscFunctionBegin; 2746ea844a1aSMatthew Knepley if (section->clObj == obj) { 2747ea844a1aSMatthew Knepley if (clSection) *clSection = section->clSection; 2748ea844a1aSMatthew Knepley if (clPoints) *clPoints = section->clPoints; 2749ea844a1aSMatthew Knepley } else { 2750ea844a1aSMatthew Knepley if (clSection) *clSection = NULL; 2751ea844a1aSMatthew Knepley if (clPoints) *clPoints = NULL; 2752ea844a1aSMatthew Knepley } 2753ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2754ea844a1aSMatthew Knepley } 2755ea844a1aSMatthew Knepley 2756d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetClosurePermutation_Internal(PetscSection section, PetscObject obj, PetscInt depth, PetscInt clSize, PetscCopyMode mode, PetscInt *clPerm) 2757d71ae5a4SJacob Faibussowitsch { 2758ea844a1aSMatthew Knepley PetscInt i; 2759c459fbc1SJed Brown khiter_t iter; 2760c459fbc1SJed Brown int new_entry; 2761c459fbc1SJed Brown PetscSectionClosurePermKey key = {depth, clSize}; 2762c459fbc1SJed Brown PetscSectionClosurePermVal *val; 2763ea844a1aSMatthew Knepley 2764ea844a1aSMatthew Knepley PetscFunctionBegin; 2765ea844a1aSMatthew Knepley if (section->clObj != obj) { 27669566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion->clSection)); 27679566063dSJacob Faibussowitsch PetscCall(ISDestroy(§ion->clPoints)); 2768ea844a1aSMatthew Knepley } 2769ea844a1aSMatthew Knepley section->clObj = obj; 27709566063dSJacob Faibussowitsch if (!section->clHash) PetscCall(PetscClPermCreate(§ion->clHash)); 2771c459fbc1SJed Brown iter = kh_put(ClPerm, section->clHash, key, &new_entry); 2772c459fbc1SJed Brown val = &kh_val(section->clHash, iter); 2773c459fbc1SJed Brown if (!new_entry) { 27749566063dSJacob Faibussowitsch PetscCall(PetscFree(val->perm)); 27759566063dSJacob Faibussowitsch PetscCall(PetscFree(val->invPerm)); 2776c459fbc1SJed Brown } 2777ea844a1aSMatthew Knepley if (mode == PETSC_COPY_VALUES) { 27789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(clSize, &val->perm)); 27799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(val->perm, clPerm, clSize)); 2780ea844a1aSMatthew Knepley } else if (mode == PETSC_OWN_POINTER) { 2781c459fbc1SJed Brown val->perm = clPerm; 2782ea844a1aSMatthew Knepley } else SETERRQ(PetscObjectComm(obj), PETSC_ERR_SUP, "Do not support borrowed arrays"); 27839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(clSize, &val->invPerm)); 2784c459fbc1SJed Brown for (i = 0; i < clSize; ++i) val->invPerm[clPerm[i]] = i; 2785ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2786ea844a1aSMatthew Knepley } 2787ea844a1aSMatthew Knepley 2788ea844a1aSMatthew Knepley /*@ 2789c459fbc1SJed Brown PetscSectionSetClosurePermutation - Set the dof permutation for the closure of each cell in the section, meaning clPerm[newIndex] = oldIndex. 2790ea844a1aSMatthew Knepley 2791ea844a1aSMatthew Knepley Not Collective 2792ea844a1aSMatthew Knepley 2793ea844a1aSMatthew Knepley Input Parameters: 2794cab54364SBarry Smith + section - The `PetscSection` 2795cab54364SBarry Smith . obj - A `PetscObject` which serves as the key for this index (usually a `DM`) 2796c459fbc1SJed Brown . depth - Depth of points on which to apply the given permutation 2797ea844a1aSMatthew Knepley - perm - Permutation of the cell dof closure 2798ea844a1aSMatthew Knepley 2799cab54364SBarry Smith Level: intermediate 2800cab54364SBarry Smith 2801cab54364SBarry Smith Notes: 2802c459fbc1SJed Brown The specified permutation will only be applied to points at depth whose closure size matches the length of perm. In a 2803c459fbc1SJed Brown mixed-topology or variable-degree finite element space, this function can be called multiple times at each depth for 2804c459fbc1SJed Brown each topology and degree. 2805c459fbc1SJed Brown 2806c459fbc1SJed Brown This approach assumes that (depth, len(perm)) uniquely identifies the desired permutation; this might not be true for 2807c459fbc1SJed Brown exotic/enriched spaces on mixed topology meshes. 2808ea844a1aSMatthew Knepley 2809cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionGetClosurePermutation()`, `PetscSectionGetClosureIndex()`, `DMPlexCreateClosureIndex()`, `PetscCopyMode` 2810ea844a1aSMatthew Knepley @*/ 2811d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetClosurePermutation(PetscSection section, PetscObject obj, PetscInt depth, IS perm) 2812d71ae5a4SJacob Faibussowitsch { 2813ea844a1aSMatthew Knepley const PetscInt *clPerm = NULL; 2814ea844a1aSMatthew Knepley PetscInt clSize = 0; 2815ea844a1aSMatthew Knepley 2816ea844a1aSMatthew Knepley PetscFunctionBegin; 2817ea844a1aSMatthew Knepley if (perm) { 28189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(perm, &clSize)); 28199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(perm, &clPerm)); 2820ea844a1aSMatthew Knepley } 28219566063dSJacob Faibussowitsch PetscCall(PetscSectionSetClosurePermutation_Internal(section, obj, depth, clSize, PETSC_COPY_VALUES, (PetscInt *)clPerm)); 28229566063dSJacob Faibussowitsch if (perm) PetscCall(ISRestoreIndices(perm, &clPerm)); 2823ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2824ea844a1aSMatthew Knepley } 2825ea844a1aSMatthew Knepley 2826d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetClosurePermutation_Internal(PetscSection section, PetscObject obj, PetscInt depth, PetscInt size, const PetscInt *perm[]) 2827d71ae5a4SJacob Faibussowitsch { 2828ea844a1aSMatthew Knepley PetscFunctionBegin; 2829ea844a1aSMatthew Knepley if (section->clObj == obj) { 2830c459fbc1SJed Brown PetscSectionClosurePermKey k = {depth, size}; 2831c459fbc1SJed Brown PetscSectionClosurePermVal v; 28329566063dSJacob Faibussowitsch PetscCall(PetscClPermGet(section->clHash, k, &v)); 2833c459fbc1SJed Brown if (perm) *perm = v.perm; 2834ea844a1aSMatthew Knepley } else { 2835ea844a1aSMatthew Knepley if (perm) *perm = NULL; 2836ea844a1aSMatthew Knepley } 2837ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2838ea844a1aSMatthew Knepley } 2839ea844a1aSMatthew Knepley 2840ea844a1aSMatthew Knepley /*@ 2841ea844a1aSMatthew Knepley PetscSectionGetClosurePermutation - Get the dof permutation for the closure of each cell in the section, meaning clPerm[newIndex] = oldIndex. 2842ea844a1aSMatthew Knepley 284340750d41SVaclav Hapla Not Collective 2844ea844a1aSMatthew Knepley 2845ea844a1aSMatthew Knepley Input Parameters: 2846cab54364SBarry Smith + section - The `PetscSection` 2847cab54364SBarry Smith . obj - A `PetscObject` which serves as the key for this index (usually a DM) 2848c459fbc1SJed Brown . depth - Depth stratum on which to obtain closure permutation 2849c459fbc1SJed Brown - clSize - Closure size to be permuted (e.g., may vary with element topology and degree) 2850ea844a1aSMatthew Knepley 2851ea844a1aSMatthew Knepley Output Parameter: 2852ea844a1aSMatthew Knepley . perm - The dof closure permutation 2853ea844a1aSMatthew Knepley 2854ea844a1aSMatthew Knepley Level: intermediate 2855ea844a1aSMatthew Knepley 2856cab54364SBarry Smith Note: 2857cab54364SBarry Smith The user must destroy the `IS` that is returned. 2858cab54364SBarry Smith 2859cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionSetClosurePermutation()`, `PetscSectionGetClosureInversePermutation()`, `PetscSectionGetClosureIndex()`, `PetscSectionSetClosureIndex()`, `DMPlexCreateClosureIndex()` 2860ea844a1aSMatthew Knepley @*/ 2861d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetClosurePermutation(PetscSection section, PetscObject obj, PetscInt depth, PetscInt clSize, IS *perm) 2862d71ae5a4SJacob Faibussowitsch { 2863ea844a1aSMatthew Knepley const PetscInt *clPerm; 2864ea844a1aSMatthew Knepley 2865ea844a1aSMatthew Knepley PetscFunctionBegin; 28669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosurePermutation_Internal(section, obj, depth, clSize, &clPerm)); 28679566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, clSize, clPerm, PETSC_USE_POINTER, perm)); 2868ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2869ea844a1aSMatthew Knepley } 2870ea844a1aSMatthew Knepley 2871d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetClosureInversePermutation_Internal(PetscSection section, PetscObject obj, PetscInt depth, PetscInt size, const PetscInt *perm[]) 2872d71ae5a4SJacob Faibussowitsch { 2873ea844a1aSMatthew Knepley PetscFunctionBegin; 2874c459fbc1SJed Brown if (section->clObj == obj && section->clHash) { 2875c459fbc1SJed Brown PetscSectionClosurePermKey k = {depth, size}; 2876c459fbc1SJed Brown PetscSectionClosurePermVal v; 28779566063dSJacob Faibussowitsch PetscCall(PetscClPermGet(section->clHash, k, &v)); 2878c459fbc1SJed Brown if (perm) *perm = v.invPerm; 2879ea844a1aSMatthew Knepley } else { 2880ea844a1aSMatthew Knepley if (perm) *perm = NULL; 2881ea844a1aSMatthew Knepley } 2882ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2883ea844a1aSMatthew Knepley } 2884ea844a1aSMatthew Knepley 2885ea844a1aSMatthew Knepley /*@ 2886ea844a1aSMatthew Knepley PetscSectionGetClosureInversePermutation - Get the inverse dof permutation for the closure of each cell in the section, meaning clPerm[oldIndex] = newIndex. 2887ea844a1aSMatthew Knepley 288840750d41SVaclav Hapla Not Collective 2889ea844a1aSMatthew Knepley 2890ea844a1aSMatthew Knepley Input Parameters: 2891cab54364SBarry Smith + section - The `PetscSection` 2892cab54364SBarry Smith . obj - A `PetscObject` which serves as the key for this index (usually a `DM`) 2893c459fbc1SJed Brown . depth - Depth stratum on which to obtain closure permutation 2894c459fbc1SJed Brown - clSize - Closure size to be permuted (e.g., may vary with element topology and degree) 2895ea844a1aSMatthew Knepley 2896ea844a1aSMatthew Knepley Output Parameters: 2897c459fbc1SJed Brown . perm - The dof closure permutation 2898ea844a1aSMatthew Knepley 2899ea844a1aSMatthew Knepley Level: intermediate 2900ea844a1aSMatthew Knepley 2901cab54364SBarry Smith Note: 2902cab54364SBarry Smith The user must destroy the `IS` that is returned. 2903cab54364SBarry Smith 2904cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionSetClosurePermutation()`, `PetscSectionGetClosureIndex()`, `PetscSectionSetClosureIndex()`, `DMPlexCreateClosureIndex()` 2905ea844a1aSMatthew Knepley @*/ 2906d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetClosureInversePermutation(PetscSection section, PetscObject obj, PetscInt depth, PetscInt clSize, IS *perm) 2907d71ae5a4SJacob Faibussowitsch { 2908ea844a1aSMatthew Knepley const PetscInt *clPerm; 2909ea844a1aSMatthew Knepley 2910ea844a1aSMatthew Knepley PetscFunctionBegin; 29119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, obj, depth, clSize, &clPerm)); 29129566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, clSize, clPerm, PETSC_USE_POINTER, perm)); 2913ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2914ea844a1aSMatthew Knepley } 2915ea844a1aSMatthew Knepley 2916ea844a1aSMatthew Knepley /*@ 2917ea844a1aSMatthew Knepley PetscSectionGetField - Get the subsection associated with a single field 2918ea844a1aSMatthew Knepley 2919ea844a1aSMatthew Knepley Input Parameters: 2920cab54364SBarry Smith + s - The `PetscSection` 2921ea844a1aSMatthew Knepley - field - The field number 2922ea844a1aSMatthew Knepley 2923ea844a1aSMatthew Knepley Output Parameter: 2924ea844a1aSMatthew Knepley . subs - The subsection for the given field 2925ea844a1aSMatthew Knepley 2926ea844a1aSMatthew Knepley Level: intermediate 2927ea844a1aSMatthew Knepley 2928cab54364SBarry Smith Note: 2929cab54364SBarry Smith Does not increase the reference count of the selected sub-section. There is no matching `PetscSectionRestoreField()` 2930cab54364SBarry Smith 2931cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `IS`, `PetscSectionSetNumFields()` 2932ea844a1aSMatthew Knepley @*/ 2933d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetField(PetscSection s, PetscInt field, PetscSection *subs) 2934d71ae5a4SJacob Faibussowitsch { 2935ea844a1aSMatthew Knepley PetscFunctionBegin; 2936ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 2937ea844a1aSMatthew Knepley PetscValidPointer(subs, 3); 29382abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, s->numFields); 2939ea844a1aSMatthew Knepley *subs = s->field[field]; 2940ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2941ea844a1aSMatthew Knepley } 2942ea844a1aSMatthew Knepley 2943ea844a1aSMatthew Knepley PetscClassId PETSC_SECTION_SYM_CLASSID; 2944ea844a1aSMatthew Knepley PetscFunctionList PetscSectionSymList = NULL; 2945ea844a1aSMatthew Knepley 2946ea844a1aSMatthew Knepley /*@ 2947cab54364SBarry Smith PetscSectionSymCreate - Creates an empty `PetscSectionSym` object. 2948ea844a1aSMatthew Knepley 2949ea844a1aSMatthew Knepley Collective 2950ea844a1aSMatthew Knepley 2951ea844a1aSMatthew Knepley Input Parameter: 2952ea844a1aSMatthew Knepley . comm - the MPI communicator 2953ea844a1aSMatthew Knepley 2954ea844a1aSMatthew Knepley Output Parameter: 2955ea844a1aSMatthew Knepley . sym - pointer to the new set of symmetries 2956ea844a1aSMatthew Knepley 2957ea844a1aSMatthew Knepley Level: developer 2958ea844a1aSMatthew Knepley 2959cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSection`, `PetscSectionSym`, `PetscSectionSymDestroy()` 2960ea844a1aSMatthew Knepley @*/ 2961d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymCreate(MPI_Comm comm, PetscSectionSym *sym) 2962d71ae5a4SJacob Faibussowitsch { 2963ea844a1aSMatthew Knepley PetscFunctionBegin; 2964ea844a1aSMatthew Knepley PetscValidPointer(sym, 2); 29659566063dSJacob Faibussowitsch PetscCall(ISInitializePackage()); 29669566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(*sym, PETSC_SECTION_SYM_CLASSID, "PetscSectionSym", "Section Symmetry", "IS", comm, PetscSectionSymDestroy, PetscSectionSymView)); 2967ea844a1aSMatthew Knepley PetscFunctionReturn(0); 2968ea844a1aSMatthew Knepley } 2969ea844a1aSMatthew Knepley 2970ea844a1aSMatthew Knepley /*@C 2971cab54364SBarry Smith PetscSectionSymSetType - Builds a `PetscSectionSym`, for a particular implementation. 2972ea844a1aSMatthew Knepley 297340750d41SVaclav Hapla Collective 2974ea844a1aSMatthew Knepley 2975ea844a1aSMatthew Knepley Input Parameters: 2976ea844a1aSMatthew Knepley + sym - The section symmetry object 2977ea844a1aSMatthew Knepley - method - The name of the section symmetry type 2978ea844a1aSMatthew Knepley 2979ea844a1aSMatthew Knepley Level: developer 2980ea844a1aSMatthew Knepley 2981cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymType`, `PetscSectionSymGetType()`, `PetscSectionSymCreate()` 2982ea844a1aSMatthew Knepley @*/ 2983d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymSetType(PetscSectionSym sym, PetscSectionSymType method) 2984d71ae5a4SJacob Faibussowitsch { 2985ea844a1aSMatthew Knepley PetscErrorCode (*r)(PetscSectionSym); 2986ea844a1aSMatthew Knepley PetscBool match; 2987ea844a1aSMatthew Knepley 2988ea844a1aSMatthew Knepley PetscFunctionBegin; 2989ea844a1aSMatthew Knepley PetscValidHeaderSpecific(sym, PETSC_SECTION_SYM_CLASSID, 1); 29909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sym, method, &match)); 2991ea844a1aSMatthew Knepley if (match) PetscFunctionReturn(0); 2992ea844a1aSMatthew Knepley 29939566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSectionSymList, method, &r)); 299428b400f6SJacob Faibussowitsch PetscCheck(r, PETSC_COMM_SELF, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown PetscSectionSym type: %s", method); 2995dbbe0bcdSBarry Smith PetscTryTypeMethod(sym, destroy); 2996ea844a1aSMatthew Knepley sym->ops->destroy = NULL; 2997dbbe0bcdSBarry Smith 29989566063dSJacob Faibussowitsch PetscCall((*r)(sym)); 29999566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sym, method)); 3000ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3001ea844a1aSMatthew Knepley } 3002ea844a1aSMatthew Knepley 3003ea844a1aSMatthew Knepley /*@C 3004cab54364SBarry Smith PetscSectionSymGetType - Gets the section symmetry type name (as a string) from the `PetscSectionSym`. 3005ea844a1aSMatthew Knepley 3006ea844a1aSMatthew Knepley Not Collective 3007ea844a1aSMatthew Knepley 3008ea844a1aSMatthew Knepley Input Parameter: 3009ea844a1aSMatthew Knepley . sym - The section symmetry 3010ea844a1aSMatthew Knepley 3011ea844a1aSMatthew Knepley Output Parameter: 3012ea844a1aSMatthew Knepley . type - The index set type name 3013ea844a1aSMatthew Knepley 3014ea844a1aSMatthew Knepley Level: developer 3015ea844a1aSMatthew Knepley 3016cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymType`, `PetscSectionSymSetType()`, `PetscSectionSymCreate()` 3017ea844a1aSMatthew Knepley @*/ 3018d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymGetType(PetscSectionSym sym, PetscSectionSymType *type) 3019d71ae5a4SJacob Faibussowitsch { 3020ea844a1aSMatthew Knepley PetscFunctionBegin; 3021ea844a1aSMatthew Knepley PetscValidHeaderSpecific(sym, PETSC_SECTION_SYM_CLASSID, 1); 3022dadcf809SJacob Faibussowitsch PetscValidPointer(type, 2); 3023ea844a1aSMatthew Knepley *type = ((PetscObject)sym)->type_name; 3024ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3025ea844a1aSMatthew Knepley } 3026ea844a1aSMatthew Knepley 3027ea844a1aSMatthew Knepley /*@C 3028cab54364SBarry Smith PetscSectionSymRegister - Registers a new section symmetry implementation 3029ea844a1aSMatthew Knepley 3030ea844a1aSMatthew Knepley Not Collective 3031ea844a1aSMatthew Knepley 3032ea844a1aSMatthew Knepley Input Parameters: 3033ea844a1aSMatthew Knepley + name - The name of a new user-defined creation routine 3034ea844a1aSMatthew Knepley - create_func - The creation routine itself 3035ea844a1aSMatthew Knepley 3036ea844a1aSMatthew Knepley Level: developer 3037ea844a1aSMatthew Knepley 3038cab54364SBarry Smith Notes: 3039cab54364SBarry Smith `PetscSectionSymRegister()` may be called multiple times to add several user-defined vectors 3040cab54364SBarry Smith 3041cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymType`, `PetscSectionSymCreate()`, `PetscSectionSymSetType()` 3042ea844a1aSMatthew Knepley @*/ 3043d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymRegister(const char sname[], PetscErrorCode (*function)(PetscSectionSym)) 3044d71ae5a4SJacob Faibussowitsch { 3045ea844a1aSMatthew Knepley PetscFunctionBegin; 30469566063dSJacob Faibussowitsch PetscCall(ISInitializePackage()); 30479566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&PetscSectionSymList, sname, function)); 3048ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3049ea844a1aSMatthew Knepley } 3050ea844a1aSMatthew Knepley 3051ea844a1aSMatthew Knepley /*@ 3052ea844a1aSMatthew Knepley PetscSectionSymDestroy - Destroys a section symmetry. 3053ea844a1aSMatthew Knepley 305440750d41SVaclav Hapla Collective 3055ea844a1aSMatthew Knepley 3056ea844a1aSMatthew Knepley Input Parameters: 3057ea844a1aSMatthew Knepley . sym - the section symmetry 3058ea844a1aSMatthew Knepley 3059ea844a1aSMatthew Knepley Level: developer 3060ea844a1aSMatthew Knepley 3061cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymCreate()`, `PetscSectionSymDestroy()` 3062ea844a1aSMatthew Knepley @*/ 3063d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymDestroy(PetscSectionSym *sym) 3064d71ae5a4SJacob Faibussowitsch { 3065ea844a1aSMatthew Knepley SymWorkLink link, next; 3066ea844a1aSMatthew Knepley 3067ea844a1aSMatthew Knepley PetscFunctionBegin; 3068ea844a1aSMatthew Knepley if (!*sym) PetscFunctionReturn(0); 3069ea844a1aSMatthew Knepley PetscValidHeaderSpecific((*sym), PETSC_SECTION_SYM_CLASSID, 1); 30709371c9d4SSatish Balay if (--((PetscObject)(*sym))->refct > 0) { 30719371c9d4SSatish Balay *sym = NULL; 30729371c9d4SSatish Balay PetscFunctionReturn(0); 3073ea844a1aSMatthew Knepley } 307448a46eb9SPierre Jolivet if ((*sym)->ops->destroy) PetscCall((*(*sym)->ops->destroy)(*sym)); 3075c9cc58a2SBarry Smith PetscCheck(!(*sym)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out"); 3076ea844a1aSMatthew Knepley for (link = (*sym)->workin; link; link = next) { 30770c99d500SBarry Smith PetscInt **perms = (PetscInt **)link->perms; 30780c99d500SBarry Smith PetscScalar **rots = (PetscScalar **)link->rots; 30790c99d500SBarry Smith PetscCall(PetscFree2(perms, rots)); 3080ea844a1aSMatthew Knepley next = link->next; 30819566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3082ea844a1aSMatthew Knepley } 3083ea844a1aSMatthew Knepley (*sym)->workin = NULL; 30849566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sym)); 3085ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3086ea844a1aSMatthew Knepley } 3087ea844a1aSMatthew Knepley 3088ea844a1aSMatthew Knepley /*@C 3089ea844a1aSMatthew Knepley PetscSectionSymView - Displays a section symmetry 3090ea844a1aSMatthew Knepley 309140750d41SVaclav Hapla Collective 3092ea844a1aSMatthew Knepley 3093ea844a1aSMatthew Knepley Input Parameters: 3094ea844a1aSMatthew Knepley + sym - the index set 3095cab54364SBarry Smith - viewer - viewer used to display the set, for example `PETSC_VIEWER_STDOUT_SELF`. 3096ea844a1aSMatthew Knepley 3097ea844a1aSMatthew Knepley Level: developer 3098ea844a1aSMatthew Knepley 3099cab54364SBarry Smith .seealso: `PetscSectionSym`, `PetscViewer`, `PetscViewerASCIIOpen()` 3100ea844a1aSMatthew Knepley @*/ 3101d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymView(PetscSectionSym sym, PetscViewer viewer) 3102d71ae5a4SJacob Faibussowitsch { 3103ea844a1aSMatthew Knepley PetscFunctionBegin; 3104ea844a1aSMatthew Knepley PetscValidHeaderSpecific(sym, PETSC_SECTION_SYM_CLASSID, 1); 310548a46eb9SPierre Jolivet if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sym), &viewer)); 3106ea844a1aSMatthew Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3107ea844a1aSMatthew Knepley PetscCheckSameComm(sym, 1, viewer, 2); 31089566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sym, viewer)); 3109dbbe0bcdSBarry Smith PetscTryTypeMethod(sym, view, viewer); 3110ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3111ea844a1aSMatthew Knepley } 3112ea844a1aSMatthew Knepley 3113ea844a1aSMatthew Knepley /*@ 3114ea844a1aSMatthew Knepley PetscSectionSetSym - Set the symmetries for the data referred to by the section 3115ea844a1aSMatthew Knepley 311640750d41SVaclav Hapla Collective 3117ea844a1aSMatthew Knepley 3118ea844a1aSMatthew Knepley Input Parameters: 3119ea844a1aSMatthew Knepley + section - the section describing data layout 3120ea844a1aSMatthew Knepley - sym - the symmetry describing the affect of orientation on the access of the data 3121ea844a1aSMatthew Knepley 3122ea844a1aSMatthew Knepley Level: developer 3123ea844a1aSMatthew Knepley 3124cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetSym()`, `PetscSectionSymCreate()` 3125ea844a1aSMatthew Knepley @*/ 3126d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetSym(PetscSection section, PetscSectionSym sym) 3127d71ae5a4SJacob Faibussowitsch { 3128ea844a1aSMatthew Knepley PetscFunctionBegin; 3129ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 31309566063dSJacob Faibussowitsch PetscCall(PetscSectionSymDestroy(&(section->sym))); 3131ea844a1aSMatthew Knepley if (sym) { 3132ea844a1aSMatthew Knepley PetscValidHeaderSpecific(sym, PETSC_SECTION_SYM_CLASSID, 2); 3133ea844a1aSMatthew Knepley PetscCheckSameComm(section, 1, sym, 2); 31349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sym)); 3135ea844a1aSMatthew Knepley } 3136ea844a1aSMatthew Knepley section->sym = sym; 3137ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3138ea844a1aSMatthew Knepley } 3139ea844a1aSMatthew Knepley 3140ea844a1aSMatthew Knepley /*@ 3141ea844a1aSMatthew Knepley PetscSectionGetSym - Get the symmetries for the data referred to by the section 3142ea844a1aSMatthew Knepley 314340750d41SVaclav Hapla Not Collective 3144ea844a1aSMatthew Knepley 3145ea844a1aSMatthew Knepley Input Parameters: 3146ea844a1aSMatthew Knepley . section - the section describing data layout 3147ea844a1aSMatthew Knepley 3148ea844a1aSMatthew Knepley Output Parameters: 3149ea844a1aSMatthew Knepley . sym - the symmetry describing the affect of orientation on the access of the data 3150ea844a1aSMatthew Knepley 3151ea844a1aSMatthew Knepley Level: developer 3152ea844a1aSMatthew Knepley 3153cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSetSym()`, `PetscSectionSymCreate()` 3154ea844a1aSMatthew Knepley @*/ 3155d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetSym(PetscSection section, PetscSectionSym *sym) 3156d71ae5a4SJacob Faibussowitsch { 3157ea844a1aSMatthew Knepley PetscFunctionBegin; 3158ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 3159ea844a1aSMatthew Knepley *sym = section->sym; 3160ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3161ea844a1aSMatthew Knepley } 3162ea844a1aSMatthew Knepley 3163ea844a1aSMatthew Knepley /*@ 3164ea844a1aSMatthew Knepley PetscSectionSetFieldSym - Set the symmetries for the data referred to by a field of the section 3165ea844a1aSMatthew Knepley 316640750d41SVaclav Hapla Collective 3167ea844a1aSMatthew Knepley 3168ea844a1aSMatthew Knepley Input Parameters: 3169ea844a1aSMatthew Knepley + section - the section describing data layout 3170ea844a1aSMatthew Knepley . field - the field number 3171ea844a1aSMatthew Knepley - sym - the symmetry describing the affect of orientation on the access of the data 3172ea844a1aSMatthew Knepley 3173ea844a1aSMatthew Knepley Level: developer 3174ea844a1aSMatthew Knepley 3175cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetFieldSym()`, `PetscSectionSymCreate()` 3176ea844a1aSMatthew Knepley @*/ 3177d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetFieldSym(PetscSection section, PetscInt field, PetscSectionSym sym) 3178d71ae5a4SJacob Faibussowitsch { 3179ea844a1aSMatthew Knepley PetscFunctionBegin; 3180ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 31812abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, section->numFields); 31829566063dSJacob Faibussowitsch PetscCall(PetscSectionSetSym(section->field[field], sym)); 3183ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3184ea844a1aSMatthew Knepley } 3185ea844a1aSMatthew Knepley 3186ea844a1aSMatthew Knepley /*@ 3187ea844a1aSMatthew Knepley PetscSectionGetFieldSym - Get the symmetries for the data referred to by a field of the section 3188ea844a1aSMatthew Knepley 318940750d41SVaclav Hapla Collective 3190ea844a1aSMatthew Knepley 3191ea844a1aSMatthew Knepley Input Parameters: 3192ea844a1aSMatthew Knepley + section - the section describing data layout 3193ea844a1aSMatthew Knepley - field - the field number 3194ea844a1aSMatthew Knepley 3195ea844a1aSMatthew Knepley Output Parameters: 3196ea844a1aSMatthew Knepley . sym - the symmetry describing the affect of orientation on the access of the data 3197ea844a1aSMatthew Knepley 3198ea844a1aSMatthew Knepley Level: developer 3199ea844a1aSMatthew Knepley 3200cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSetFieldSym()`, `PetscSectionSymCreate()` 3201ea844a1aSMatthew Knepley @*/ 3202d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldSym(PetscSection section, PetscInt field, PetscSectionSym *sym) 3203d71ae5a4SJacob Faibussowitsch { 3204ea844a1aSMatthew Knepley PetscFunctionBegin; 3205ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 32062abc8c78SJacob Faibussowitsch PetscSectionCheckValidField(field, section->numFields); 3207ea844a1aSMatthew Knepley *sym = section->field[field]->sym; 3208ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3209ea844a1aSMatthew Knepley } 3210ea844a1aSMatthew Knepley 3211ea844a1aSMatthew Knepley /*@C 3212cab54364SBarry Smith PetscSectionGetPointSyms - Get the symmetries for a set of points in a `PetscSection` under specific orientations. 3213ea844a1aSMatthew Knepley 321440750d41SVaclav Hapla Not Collective 3215ea844a1aSMatthew Knepley 3216ea844a1aSMatthew Knepley Input Parameters: 3217ea844a1aSMatthew Knepley + section - the section 3218ea844a1aSMatthew Knepley . numPoints - the number of points 3219ea844a1aSMatthew Knepley - points - an array of size 2 * numPoints, containing a list of (point, orientation) pairs. (An orientation is an 3220ea844a1aSMatthew Knepley arbitrary integer: its interpretation is up to sym. Orientations are used by DM: for their interpretation in that 3221ea844a1aSMatthew Knepley context, see DMPlexGetConeOrientation()). 3222ea844a1aSMatthew Knepley 3223d8d19677SJose E. Roman Output Parameters: 3224ea844a1aSMatthew Knepley + perms - The permutations for the given orientations (or NULL if there is no symmetry or the permutation is the identity). 3225ea844a1aSMatthew Knepley - rots - The field rotations symmetries for the given orientations (or NULL if there is no symmetry or the rotations are all 3226ea844a1aSMatthew Knepley identity). 3227ea844a1aSMatthew Knepley 3228ea844a1aSMatthew Knepley Example of usage, gathering dofs into a local array (lArray) from a section array (sArray): 3229ea844a1aSMatthew Knepley .vb 3230ea844a1aSMatthew Knepley const PetscInt **perms; 3231ea844a1aSMatthew Knepley const PetscScalar **rots; 3232ea844a1aSMatthew Knepley PetscInt lOffset; 3233ea844a1aSMatthew Knepley 3234ea844a1aSMatthew Knepley PetscSectionGetPointSyms(section,numPoints,points,&perms,&rots); 3235ea844a1aSMatthew Knepley for (i = 0, lOffset = 0; i < numPoints; i++) { 3236ea844a1aSMatthew Knepley PetscInt point = points[2*i], dof, sOffset; 3237ea844a1aSMatthew Knepley const PetscInt *perm = perms ? perms[i] : NULL; 3238ea844a1aSMatthew Knepley const PetscScalar *rot = rots ? rots[i] : NULL; 3239ea844a1aSMatthew Knepley 3240ea844a1aSMatthew Knepley PetscSectionGetDof(section,point,&dof); 3241ea844a1aSMatthew Knepley PetscSectionGetOffset(section,point,&sOffset); 3242ea844a1aSMatthew Knepley 3243ea844a1aSMatthew Knepley if (perm) {for (j = 0; j < dof; j++) {lArray[lOffset + perm[j]] = sArray[sOffset + j];}} 3244ea844a1aSMatthew Knepley else {for (j = 0; j < dof; j++) {lArray[lOffset + j ] = sArray[sOffset + j];}} 3245ea844a1aSMatthew Knepley if (rot) {for (j = 0; j < dof; j++) {lArray[lOffset + j ] *= rot[j]; }} 3246ea844a1aSMatthew Knepley lOffset += dof; 3247ea844a1aSMatthew Knepley } 3248ea844a1aSMatthew Knepley PetscSectionRestorePointSyms(section,numPoints,points,&perms,&rots); 3249ea844a1aSMatthew Knepley .ve 3250ea844a1aSMatthew Knepley 3251ea844a1aSMatthew Knepley Example of usage, adding dofs into a section array (sArray) from a local array (lArray): 3252ea844a1aSMatthew Knepley .vb 3253ea844a1aSMatthew Knepley const PetscInt **perms; 3254ea844a1aSMatthew Knepley const PetscScalar **rots; 3255ea844a1aSMatthew Knepley PetscInt lOffset; 3256ea844a1aSMatthew Knepley 3257ea844a1aSMatthew Knepley PetscSectionGetPointSyms(section,numPoints,points,&perms,&rots); 3258ea844a1aSMatthew Knepley for (i = 0, lOffset = 0; i < numPoints; i++) { 3259ea844a1aSMatthew Knepley PetscInt point = points[2*i], dof, sOffset; 3260ea844a1aSMatthew Knepley const PetscInt *perm = perms ? perms[i] : NULL; 3261ea844a1aSMatthew Knepley const PetscScalar *rot = rots ? rots[i] : NULL; 3262ea844a1aSMatthew Knepley 3263ea844a1aSMatthew Knepley PetscSectionGetDof(section,point,&dof); 3264ea844a1aSMatthew Knepley PetscSectionGetOffset(section,point,&sOff); 3265ea844a1aSMatthew Knepley 3266ea844a1aSMatthew Knepley if (perm) {for (j = 0; j < dof; j++) {sArray[sOffset + j] += lArray[lOffset + perm[j]] * (rot ? PetscConj(rot[perm[j]]) : 1.);}} 3267ea844a1aSMatthew Knepley else {for (j = 0; j < dof; j++) {sArray[sOffset + j] += lArray[lOffset + j ] * (rot ? PetscConj(rot[ j ]) : 1.);}} 3268ea844a1aSMatthew Knepley offset += dof; 3269ea844a1aSMatthew Knepley } 3270ea844a1aSMatthew Knepley PetscSectionRestorePointSyms(section,numPoints,points,&perms,&rots); 3271ea844a1aSMatthew Knepley .ve 3272ea844a1aSMatthew Knepley 3273ea844a1aSMatthew Knepley Level: developer 3274ea844a1aSMatthew Knepley 3275cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionRestorePointSyms()`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()` 3276ea844a1aSMatthew Knepley @*/ 3277d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetPointSyms(PetscSection section, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots) 3278d71ae5a4SJacob Faibussowitsch { 3279ea844a1aSMatthew Knepley PetscSectionSym sym; 3280ea844a1aSMatthew Knepley 3281ea844a1aSMatthew Knepley PetscFunctionBegin; 3282ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 3283ea844a1aSMatthew Knepley if (numPoints) PetscValidIntPointer(points, 3); 3284ea844a1aSMatthew Knepley if (perms) *perms = NULL; 3285ea844a1aSMatthew Knepley if (rots) *rots = NULL; 3286ea844a1aSMatthew Knepley sym = section->sym; 3287ea844a1aSMatthew Knepley if (sym && (perms || rots)) { 3288ea844a1aSMatthew Knepley SymWorkLink link; 3289ea844a1aSMatthew Knepley 3290ea844a1aSMatthew Knepley if (sym->workin) { 3291ea844a1aSMatthew Knepley link = sym->workin; 3292ea844a1aSMatthew Knepley sym->workin = sym->workin->next; 3293ea844a1aSMatthew Knepley } else { 32944dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 3295ea844a1aSMatthew Knepley } 3296ea844a1aSMatthew Knepley if (numPoints > link->numPoints) { 32970c99d500SBarry Smith PetscInt **perms = (PetscInt **)link->perms; 32980c99d500SBarry Smith PetscScalar **rots = (PetscScalar **)link->rots; 32990c99d500SBarry Smith PetscCall(PetscFree2(perms, rots)); 33000c99d500SBarry Smith PetscCall(PetscMalloc2(numPoints, (PetscInt ***)&link->perms, numPoints, (PetscScalar ***)&link->rots)); 3301ea844a1aSMatthew Knepley link->numPoints = numPoints; 3302ea844a1aSMatthew Knepley } 3303ea844a1aSMatthew Knepley link->next = sym->workout; 3304ea844a1aSMatthew Knepley sym->workout = link; 33059566063dSJacob Faibussowitsch PetscCall(PetscArrayzero((PetscInt **)link->perms, numPoints)); 33069566063dSJacob Faibussowitsch PetscCall(PetscArrayzero((PetscInt **)link->rots, numPoints)); 33079566063dSJacob Faibussowitsch PetscCall((*sym->ops->getpoints)(sym, section, numPoints, points, link->perms, link->rots)); 3308ea844a1aSMatthew Knepley if (perms) *perms = link->perms; 3309ea844a1aSMatthew Knepley if (rots) *rots = link->rots; 3310ea844a1aSMatthew Knepley } 3311ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3312ea844a1aSMatthew Knepley } 3313ea844a1aSMatthew Knepley 3314ea844a1aSMatthew Knepley /*@C 3315cab54364SBarry Smith PetscSectionRestorePointSyms - Restore the symmetries returned by `PetscSectionGetPointSyms()` 3316ea844a1aSMatthew Knepley 331740750d41SVaclav Hapla Not Collective 3318ea844a1aSMatthew Knepley 3319ea844a1aSMatthew Knepley Input Parameters: 3320ea844a1aSMatthew Knepley + section - the section 3321ea844a1aSMatthew Knepley . numPoints - the number of points 3322ea844a1aSMatthew Knepley - points - an array of size 2 * numPoints, containing a list of (point, orientation) pairs. (An orientation is an 3323cab54364SBarry Smith arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that 3324cab54364SBarry Smith context, see `DMPlexGetConeOrientation()`). 3325ea844a1aSMatthew Knepley 3326d8d19677SJose E. Roman Output Parameters: 3327ea844a1aSMatthew Knepley + perms - The permutations for the given orientations: set to NULL at conclusion 3328ea844a1aSMatthew Knepley - rots - The field rotations symmetries for the given orientations: set to NULL at conclusion 3329ea844a1aSMatthew Knepley 3330ea844a1aSMatthew Knepley Level: developer 3331ea844a1aSMatthew Knepley 3332cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetPointSyms()`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()` 3333ea844a1aSMatthew Knepley @*/ 3334d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionRestorePointSyms(PetscSection section, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots) 3335d71ae5a4SJacob Faibussowitsch { 3336ea844a1aSMatthew Knepley PetscSectionSym sym; 3337ea844a1aSMatthew Knepley 3338ea844a1aSMatthew Knepley PetscFunctionBegin; 3339ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 3340ea844a1aSMatthew Knepley sym = section->sym; 3341ea844a1aSMatthew Knepley if (sym && (perms || rots)) { 3342ea844a1aSMatthew Knepley SymWorkLink *p, link; 3343ea844a1aSMatthew Knepley 3344ea844a1aSMatthew Knepley for (p = &sym->workout; (link = *p); p = &link->next) { 3345ea844a1aSMatthew Knepley if ((perms && link->perms == *perms) || (rots && link->rots == *rots)) { 3346ea844a1aSMatthew Knepley *p = link->next; 3347ea844a1aSMatthew Knepley link->next = sym->workin; 3348ea844a1aSMatthew Knepley sym->workin = link; 3349ea844a1aSMatthew Knepley if (perms) *perms = NULL; 3350ea844a1aSMatthew Knepley if (rots) *rots = NULL; 3351ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3352ea844a1aSMatthew Knepley } 3353ea844a1aSMatthew Knepley } 3354ea844a1aSMatthew Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 3355ea844a1aSMatthew Knepley } 3356ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3357ea844a1aSMatthew Knepley } 3358ea844a1aSMatthew Knepley 3359ea844a1aSMatthew Knepley /*@C 3360cab54364SBarry Smith PetscSectionGetFieldPointSyms - Get the symmetries for a set of points in a field of a `PetscSection` under specific orientations. 3361ea844a1aSMatthew Knepley 336240750d41SVaclav Hapla Not Collective 3363ea844a1aSMatthew Knepley 3364ea844a1aSMatthew Knepley Input Parameters: 3365ea844a1aSMatthew Knepley + section - the section 3366ea844a1aSMatthew Knepley . field - the field of the section 3367ea844a1aSMatthew Knepley . numPoints - the number of points 3368ea844a1aSMatthew Knepley - points - an array of size 2 * numPoints, containing a list of (point, orientation) pairs. (An orientation is an 3369cab54364SBarry Smith arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that 3370cab54364SBarry Smith context, see `DMPlexGetConeOrientation()`). 3371ea844a1aSMatthew Knepley 3372d8d19677SJose E. Roman Output Parameters: 3373ea844a1aSMatthew Knepley + perms - The permutations for the given orientations (or NULL if there is no symmetry or the permutation is the identity). 3374ea844a1aSMatthew Knepley - rots - The field rotations symmetries for the given orientations (or NULL if there is no symmetry or the rotations are all 3375ea844a1aSMatthew Knepley identity). 3376ea844a1aSMatthew Knepley 3377ea844a1aSMatthew Knepley Level: developer 3378ea844a1aSMatthew Knepley 3379cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetPointSyms()`, `PetscSectionRestoreFieldPointSyms()` 3380ea844a1aSMatthew Knepley @*/ 3381d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetFieldPointSyms(PetscSection section, PetscInt field, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots) 3382d71ae5a4SJacob Faibussowitsch { 3383ea844a1aSMatthew Knepley PetscFunctionBegin; 3384ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 338508401ef6SPierre Jolivet PetscCheck(field <= section->numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "field %" PetscInt_FMT " greater than number of fields (%" PetscInt_FMT ") in section", field, section->numFields); 33869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(section->field[field], numPoints, points, perms, rots)); 3387ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3388ea844a1aSMatthew Knepley } 3389ea844a1aSMatthew Knepley 3390ea844a1aSMatthew Knepley /*@C 3391cab54364SBarry Smith PetscSectionRestoreFieldPointSyms - Restore the symmetries returned by `PetscSectionGetFieldPointSyms()` 3392ea844a1aSMatthew Knepley 339340750d41SVaclav Hapla Not Collective 3394ea844a1aSMatthew Knepley 3395ea844a1aSMatthew Knepley Input Parameters: 3396ea844a1aSMatthew Knepley + section - the section 3397ea844a1aSMatthew Knepley . field - the field number 3398ea844a1aSMatthew Knepley . numPoints - the number of points 3399ea844a1aSMatthew Knepley - points - an array of size 2 * numPoints, containing a list of (point, orientation) pairs. (An orientation is an 3400cab54364SBarry Smith arbitrary integer: its interpretation is up to sym. Orientations are used by `DM`: for their interpretation in that 3401cab54364SBarry Smith context, see `DMPlexGetConeOrientation()`). 3402ea844a1aSMatthew Knepley 3403d8d19677SJose E. Roman Output Parameters: 3404ea844a1aSMatthew Knepley + perms - The permutations for the given orientations: set to NULL at conclusion 3405ea844a1aSMatthew Knepley - rots - The field rotations symmetries for the given orientations: set to NULL at conclusion 3406ea844a1aSMatthew Knepley 3407ea844a1aSMatthew Knepley Level: developer 3408ea844a1aSMatthew Knepley 3409cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionRestorePointSyms()`, `petscSectionGetFieldPointSyms()`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()` 3410ea844a1aSMatthew Knepley @*/ 3411d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionRestoreFieldPointSyms(PetscSection section, PetscInt field, PetscInt numPoints, const PetscInt *points, const PetscInt ***perms, const PetscScalar ***rots) 3412d71ae5a4SJacob Faibussowitsch { 3413ea844a1aSMatthew Knepley PetscFunctionBegin; 3414ea844a1aSMatthew Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 1); 341508401ef6SPierre Jolivet PetscCheck(field <= section->numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "field %" PetscInt_FMT " greater than number of fields (%" PetscInt_FMT ") in section", field, section->numFields); 34169566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(section->field[field], numPoints, points, perms, rots)); 3417ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3418ea844a1aSMatthew Knepley } 3419ea844a1aSMatthew Knepley 3420ea844a1aSMatthew Knepley /*@ 3421b004864fSMatthew G. Knepley PetscSectionSymCopy - Copy the symmetries, assuming that the point structure is compatible 3422b004864fSMatthew G. Knepley 342340750d41SVaclav Hapla Not Collective 3424b004864fSMatthew G. Knepley 3425b004864fSMatthew G. Knepley Input Parameter: 3426cab54364SBarry Smith . sym - the `PetscSectionSym` 3427b004864fSMatthew G. Knepley 3428b004864fSMatthew G. Knepley Output Parameter: 3429b004864fSMatthew G. Knepley . nsym - the equivalent symmetries 3430b004864fSMatthew G. Knepley 3431b004864fSMatthew G. Knepley Level: developer 3432b004864fSMatthew G. Knepley 3433cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`, `PetscSectionSymLabelSetStratum()`, `PetscSectionGetPointSyms()` 3434b004864fSMatthew G. Knepley @*/ 3435d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymCopy(PetscSectionSym sym, PetscSectionSym nsym) 3436d71ae5a4SJacob Faibussowitsch { 3437b004864fSMatthew G. Knepley PetscFunctionBegin; 3438b004864fSMatthew G. Knepley PetscValidHeaderSpecific(sym, PETSC_SECTION_SYM_CLASSID, 1); 3439b004864fSMatthew G. Knepley PetscValidHeaderSpecific(nsym, PETSC_SECTION_SYM_CLASSID, 2); 3440dbbe0bcdSBarry Smith PetscTryTypeMethod(sym, copy, nsym); 3441b004864fSMatthew G. Knepley PetscFunctionReturn(0); 3442b004864fSMatthew G. Knepley } 3443b004864fSMatthew G. Knepley 3444b004864fSMatthew G. Knepley /*@ 3445cab54364SBarry Smith PetscSectionSymDistribute - Distribute the symmetries in accordance with the input `PetscSF` 3446b004864fSMatthew G. Knepley 3447b004864fSMatthew G. Knepley Collective 3448b004864fSMatthew G. Knepley 3449b004864fSMatthew G. Knepley Input Parameters: 3450cab54364SBarry Smith + sym - the `PetscSectionSym` 3451b004864fSMatthew G. Knepley - migrationSF - the distribution map from roots to leaves 3452b004864fSMatthew G. Knepley 3453b004864fSMatthew G. Knepley Output Parameters: 3454b004864fSMatthew G. Knepley . dsym - the redistributed symmetries 3455b004864fSMatthew G. Knepley 3456b004864fSMatthew G. Knepley Level: developer 3457b004864fSMatthew G. Knepley 3458cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSymCreate()`, `PetscSectionSetSym()`, `PetscSectionGetSym()`, `PetscSectionSymLabelSetStratum()`, `PetscSectionGetPointSyms()` 3459b004864fSMatthew G. Knepley @*/ 3460d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSymDistribute(PetscSectionSym sym, PetscSF migrationSF, PetscSectionSym *dsym) 3461d71ae5a4SJacob Faibussowitsch { 3462b004864fSMatthew G. Knepley PetscFunctionBegin; 3463b004864fSMatthew G. Knepley PetscValidHeaderSpecific(sym, PETSC_SECTION_SYM_CLASSID, 1); 3464b004864fSMatthew G. Knepley PetscValidHeaderSpecific(migrationSF, PETSCSF_CLASSID, 2); 3465b004864fSMatthew G. Knepley PetscValidPointer(dsym, 3); 3466dbbe0bcdSBarry Smith PetscTryTypeMethod(sym, distribute, migrationSF, dsym); 3467b004864fSMatthew G. Knepley PetscFunctionReturn(0); 3468b004864fSMatthew G. Knepley } 3469b004864fSMatthew G. Knepley 3470b004864fSMatthew G. Knepley /*@ 3471ea844a1aSMatthew Knepley PetscSectionGetUseFieldOffsets - Get the flag to use field offsets directly in a global section, rather than just the point offset 3472ea844a1aSMatthew Knepley 347340750d41SVaclav Hapla Not Collective 3474ea844a1aSMatthew Knepley 3475ea844a1aSMatthew Knepley Input Parameter: 3476cab54364SBarry Smith . s - the global `PetscSection` 3477ea844a1aSMatthew Knepley 3478ea844a1aSMatthew Knepley Output Parameters: 3479ea844a1aSMatthew Knepley . flg - the flag 3480ea844a1aSMatthew Knepley 3481ea844a1aSMatthew Knepley Level: developer 3482ea844a1aSMatthew Knepley 3483cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionSetChart()`, `PetscSectionCreate()` 3484ea844a1aSMatthew Knepley @*/ 3485d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionGetUseFieldOffsets(PetscSection s, PetscBool *flg) 3486d71ae5a4SJacob Faibussowitsch { 3487ea844a1aSMatthew Knepley PetscFunctionBegin; 3488ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 3489ea844a1aSMatthew Knepley *flg = s->useFieldOff; 3490ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3491ea844a1aSMatthew Knepley } 3492ea844a1aSMatthew Knepley 3493ea844a1aSMatthew Knepley /*@ 3494ea844a1aSMatthew Knepley PetscSectionSetUseFieldOffsets - Set the flag to use field offsets directly in a global section, rather than just the point offset 3495ea844a1aSMatthew Knepley 349640750d41SVaclav Hapla Not Collective 3497ea844a1aSMatthew Knepley 3498ea844a1aSMatthew Knepley Input Parameters: 3499cab54364SBarry Smith + s - the global `PetscSection` 3500ea844a1aSMatthew Knepley - flg - the flag 3501ea844a1aSMatthew Knepley 3502ea844a1aSMatthew Knepley Level: developer 3503ea844a1aSMatthew Knepley 3504cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetUseFieldOffsets()`, `PetscSectionSetChart()`, `PetscSectionCreate()` 3505ea844a1aSMatthew Knepley @*/ 3506d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionSetUseFieldOffsets(PetscSection s, PetscBool flg) 3507d71ae5a4SJacob Faibussowitsch { 3508ea844a1aSMatthew Knepley PetscFunctionBegin; 3509ea844a1aSMatthew Knepley PetscValidHeaderSpecific(s, PETSC_SECTION_CLASSID, 1); 3510ea844a1aSMatthew Knepley s->useFieldOff = flg; 3511ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3512ea844a1aSMatthew Knepley } 3513ea844a1aSMatthew Knepley 3514ea844a1aSMatthew Knepley #define PetscSectionExpandPoints_Loop(TYPE) \ 3515ea844a1aSMatthew Knepley { \ 3516ea844a1aSMatthew Knepley PetscInt i, n, o0, o1, size; \ 3517ea844a1aSMatthew Knepley TYPE *a0 = (TYPE *)origArray, *a1; \ 35189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(s, &size)); \ 35199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &a1)); \ 3520ea844a1aSMatthew Knepley for (i = 0; i < npoints; i++) { \ 35219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(origSection, points_[i], &o0)); \ 35229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, i, &o1)); \ 35239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, i, &n)); \ 35249566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&a1[o1], &a0[o0], n *unitsize)); \ 3525ea844a1aSMatthew Knepley } \ 3526ea844a1aSMatthew Knepley *newArray = (void *)a1; \ 3527ea844a1aSMatthew Knepley } 3528ea844a1aSMatthew Knepley 3529ea844a1aSMatthew Knepley /*@ 3530ea844a1aSMatthew Knepley PetscSectionExtractDofsFromArray - Extracts elements of an array corresponding to DOFs of specified points. 3531ea844a1aSMatthew Knepley 353240750d41SVaclav Hapla Not Collective 3533ea844a1aSMatthew Knepley 3534ea844a1aSMatthew Knepley Input Parameters: 3535cab54364SBarry Smith + origSection - the `PetscSection` describing the layout of the array 3536cab54364SBarry Smith . dataType - `MPI_Datatype` describing the data type of the array (currently only `MPIU_INT`, `MPIU_SCALAR`, `MPIU_REAL`) 3537ea844a1aSMatthew Knepley . origArray - the array; its size must be equal to the storage size of origSection 3538cab54364SBarry Smith - points - `IS` with points to extract; its indices must lie in the chart of origSection 3539ea844a1aSMatthew Knepley 3540ea844a1aSMatthew Knepley Output Parameters: 3541cab54364SBarry Smith + newSection - the new `PetscSection` desribing the layout of the new array (with points renumbered 0,1,... but preserving numbers of DOFs) 3542ea844a1aSMatthew Knepley - newArray - the array of the extracted DOFs; its size is the storage size of newSection 3543ea844a1aSMatthew Knepley 3544ea844a1aSMatthew Knepley Level: developer 3545ea844a1aSMatthew Knepley 3546cab54364SBarry Smith .seealso: [PetscSection](sec_petscsection), `PetscSectionSym`, `PetscSectionGetChart()`, `PetscSectionGetDof()`, `PetscSectionGetStorageSize()`, `PetscSectionCreate()` 3547ea844a1aSMatthew Knepley @*/ 3548d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSectionExtractDofsFromArray(PetscSection origSection, MPI_Datatype dataType, const void *origArray, IS points, PetscSection *newSection, void *newArray[]) 3549d71ae5a4SJacob Faibussowitsch { 3550ea844a1aSMatthew Knepley PetscSection s; 3551ea844a1aSMatthew Knepley const PetscInt *points_; 3552ea844a1aSMatthew Knepley PetscInt i, n, npoints, pStart, pEnd; 3553ea844a1aSMatthew Knepley PetscMPIInt unitsize; 3554ea844a1aSMatthew Knepley 3555ea844a1aSMatthew Knepley PetscFunctionBegin; 3556ea844a1aSMatthew Knepley PetscValidHeaderSpecific(origSection, PETSC_SECTION_CLASSID, 1); 3557ea844a1aSMatthew Knepley PetscValidPointer(origArray, 3); 3558ea844a1aSMatthew Knepley PetscValidHeaderSpecific(points, IS_CLASSID, 4); 3559ea844a1aSMatthew Knepley if (newSection) PetscValidPointer(newSection, 5); 3560ea844a1aSMatthew Knepley if (newArray) PetscValidPointer(newArray, 6); 35619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(dataType, &unitsize)); 35629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(points, &npoints)); 35639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(points, &points_)); 35649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(origSection, &pStart, &pEnd)); 35659566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &s)); 35669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(s, 0, npoints)); 3567ea844a1aSMatthew Knepley for (i = 0; i < npoints; i++) { 3568c9cc58a2SBarry Smith PetscCheck(points_[i] >= pStart && points_[i] < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "point %" PetscInt_FMT " (index %" PetscInt_FMT ") in input IS out of input section's chart", points_[i], i); 35699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(origSection, points_[i], &n)); 35709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(s, i, n)); 3571ea844a1aSMatthew Knepley } 35729566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(s)); 3573ea844a1aSMatthew Knepley if (newArray) { 35749371c9d4SSatish Balay if (dataType == MPIU_INT) { 35759371c9d4SSatish Balay PetscSectionExpandPoints_Loop(PetscInt); 35769371c9d4SSatish Balay } else if (dataType == MPIU_SCALAR) { 35779371c9d4SSatish Balay PetscSectionExpandPoints_Loop(PetscScalar); 35789371c9d4SSatish Balay } else if (dataType == MPIU_REAL) { 35799371c9d4SSatish Balay PetscSectionExpandPoints_Loop(PetscReal); 35809371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "not implemented for this MPI_Datatype"); 3581ea844a1aSMatthew Knepley } 3582ea844a1aSMatthew Knepley if (newSection) { 3583ea844a1aSMatthew Knepley *newSection = s; 3584ea844a1aSMatthew Knepley } else { 35859566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s)); 3586ea844a1aSMatthew Knepley } 35879566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(points, &points_)); 3588ea844a1aSMatthew Knepley PetscFunctionReturn(0); 3589ea844a1aSMatthew Knepley } 3590