18cd53115SBarry Smith 240e23c03SJunchao Zhang #include <../src/vec/is/sf/impls/basic/sfbasic.h> 3cd620004SJunchao Zhang #include <../src/vec/is/sf/impls/basic/sfpack.h> 4b23bfdefSJunchao Zhang 540e23c03SJunchao Zhang /*===================================================================================*/ 640e23c03SJunchao Zhang /* SF public interface implementations */ 740e23c03SJunchao Zhang /*===================================================================================*/ 840e23c03SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFSetUp_Basic(PetscSF sf) 995fce210SBarry Smith { 1095fce210SBarry Smith PetscErrorCode ierr; 11b23bfdefSJunchao Zhang PetscSF_Basic *bas = (PetscSF_Basic*)sf->data; 1295fce210SBarry Smith PetscInt *rlengths,*ilengths,i; 1340e23c03SJunchao Zhang PetscMPIInt rank,niranks,*iranks,tag; 1495fce210SBarry Smith MPI_Comm comm; 15b5a8e515SJed Brown MPI_Group group; 1640e23c03SJunchao Zhang MPI_Request *rootreqs,*leafreqs; 1795fce210SBarry Smith 1895fce210SBarry Smith PetscFunctionBegin; 19b5a8e515SJed Brown ierr = MPI_Comm_group(PETSC_COMM_SELF,&group);CHKERRQ(ierr); 20b5a8e515SJed Brown ierr = PetscSFSetUpRanks(sf,group);CHKERRQ(ierr); 21b5a8e515SJed Brown ierr = MPI_Group_free(&group);CHKERRQ(ierr); 2295fce210SBarry Smith ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 2340e23c03SJunchao Zhang ierr = PetscObjectGetNewTag((PetscObject)sf,&tag);CHKERRQ(ierr); 24c943f53fSJed Brown ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2595fce210SBarry Smith /* 2695fce210SBarry Smith * Inform roots about how many leaves and from which ranks 2795fce210SBarry Smith */ 28785e854fSJed Brown ierr = PetscMalloc1(sf->nranks,&rlengths);CHKERRQ(ierr); 29cd620004SJunchao Zhang /* Determine number, sending ranks and length of incoming */ 3095fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 3195fce210SBarry Smith rlengths[i] = sf->roffset[i+1] - sf->roffset[i]; /* Number of roots referenced by my leaves; for rank sf->ranks[i] */ 3295fce210SBarry Smith } 3340e23c03SJunchao Zhang ierr = PetscCommBuildTwoSided(comm,1,MPIU_INT,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,rlengths+sf->ndranks,&niranks,&iranks,(void**)&ilengths);CHKERRQ(ierr); 34c943f53fSJed Brown 350b899082SJunchao Zhang /* Sort iranks. See use of VecScatterGetRemoteOrdered_Private() in MatGetBrowsOfAoCols_MPIAIJ() on why. 360b899082SJunchao Zhang We could sort ranks there at the price of allocating extra working arrays. Presumably, niranks is 370b899082SJunchao Zhang small and the sorting is cheap. 380b899082SJunchao Zhang */ 390b899082SJunchao Zhang ierr = PetscSortMPIIntWithIntArray(niranks,iranks,ilengths);CHKERRQ(ierr); 400b899082SJunchao Zhang 41c943f53fSJed Brown /* Partition into distinguished and non-distinguished incoming ranks */ 42c943f53fSJed Brown bas->ndiranks = sf->ndranks; 43c943f53fSJed Brown bas->niranks = bas->ndiranks + niranks; 44c943f53fSJed Brown ierr = PetscMalloc2(bas->niranks,&bas->iranks,bas->niranks+1,&bas->ioffset);CHKERRQ(ierr); 45c943f53fSJed Brown bas->ioffset[0] = 0; 46c943f53fSJed Brown for (i=0; i<bas->ndiranks; i++) { 47c943f53fSJed Brown bas->iranks[i] = sf->ranks[i]; 48c943f53fSJed Brown bas->ioffset[i+1] = bas->ioffset[i] + rlengths[i]; 49c943f53fSJed Brown } 5040e23c03SJunchao Zhang if (bas->ndiranks > 1 || (bas->ndiranks == 1 && bas->iranks[0] != rank)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Broken setup for shared ranks"); 5140e23c03SJunchao Zhang for ( ; i<bas->niranks; i++) { 52c943f53fSJed Brown bas->iranks[i] = iranks[i-bas->ndiranks]; 53c943f53fSJed Brown bas->ioffset[i+1] = bas->ioffset[i] + ilengths[i-bas->ndiranks]; 54c943f53fSJed Brown } 55c943f53fSJed Brown bas->itotal = bas->ioffset[i]; 5695fce210SBarry Smith ierr = PetscFree(rlengths);CHKERRQ(ierr); 57c943f53fSJed Brown ierr = PetscFree(iranks);CHKERRQ(ierr); 58c943f53fSJed Brown ierr = PetscFree(ilengths);CHKERRQ(ierr); 5995fce210SBarry Smith 6095fce210SBarry Smith /* Send leaf identities to roots */ 61c943f53fSJed Brown ierr = PetscMalloc1(bas->itotal,&bas->irootloc);CHKERRQ(ierr); 6240e23c03SJunchao Zhang ierr = PetscMalloc2(bas->niranks-bas->ndiranks,&rootreqs,sf->nranks-sf->ndranks,&leafreqs);CHKERRQ(ierr); 6340e23c03SJunchao Zhang for (i=bas->ndiranks; i<bas->niranks; i++) { 6440e23c03SJunchao Zhang ierr = MPI_Irecv(bas->irootloc+bas->ioffset[i],bas->ioffset[i+1]-bas->ioffset[i],MPIU_INT,bas->iranks[i],tag,comm,&rootreqs[i-bas->ndiranks]);CHKERRQ(ierr); 6540e23c03SJunchao Zhang } 6640e23c03SJunchao Zhang for (i=0; i<sf->nranks; i++) { 6795fce210SBarry Smith PetscMPIInt npoints; 6895fce210SBarry Smith ierr = PetscMPIIntCast(sf->roffset[i+1] - sf->roffset[i],&npoints);CHKERRQ(ierr); 6940e23c03SJunchao Zhang if (i < sf->ndranks) { 7040e23c03SJunchao Zhang if (sf->ranks[i] != rank) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot interpret distinguished leaf rank"); 7140e23c03SJunchao Zhang if (bas->iranks[0] != rank) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot interpret distinguished root rank"); 7240e23c03SJunchao Zhang if (npoints != bas->ioffset[1]-bas->ioffset[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Distinguished rank exchange has mismatched lengths"); 7340e23c03SJunchao Zhang ierr = PetscArraycpy(bas->irootloc+bas->ioffset[0],sf->rremote+sf->roffset[i],npoints);CHKERRQ(ierr); 74c943f53fSJed Brown continue; 75c943f53fSJed Brown } 7640e23c03SJunchao Zhang ierr = MPI_Isend(sf->rremote+sf->roffset[i],npoints,MPIU_INT,sf->ranks[i],tag,comm,&leafreqs[i-sf->ndranks]);CHKERRQ(ierr); 77bf39f1bfSJed Brown } 7840e23c03SJunchao Zhang ierr = MPI_Waitall(bas->niranks-bas->ndiranks,rootreqs,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 7940e23c03SJunchao Zhang ierr = MPI_Waitall(sf->nranks-sf->ndranks,leafreqs,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 8040e23c03SJunchao Zhang ierr = PetscFree2(rootreqs,leafreqs);CHKERRQ(ierr); 8195fce210SBarry Smith 82cd620004SJunchao Zhang sf->nleafreqs = sf->nranks - sf->ndranks; 83cd620004SJunchao Zhang bas->nrootreqs = bas->niranks - bas->ndiranks; 84cd620004SJunchao Zhang sf->persistent = PETSC_TRUE; 85eb02082bSJunchao Zhang 86cd620004SJunchao Zhang /* Setup fields related to packing */ 87cd620004SJunchao Zhang ierr = PetscSFSetUpPackFields(sf);CHKERRQ(ierr); 8895fce210SBarry Smith PetscFunctionReturn(0); 8995fce210SBarry Smith } 9095fce210SBarry Smith 9140e23c03SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFReset_Basic(PetscSF sf) 9295fce210SBarry Smith { 9395fce210SBarry Smith PetscErrorCode ierr; 94cd620004SJunchao Zhang PetscSF_Basic *bas = (PetscSF_Basic*)sf->data; 9595fce210SBarry Smith 9695fce210SBarry Smith PetscFunctionBegin; 9729046d53SLisandro Dalcin if (bas->inuse) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Outstanding operation has not been completed"); 98c943f53fSJed Brown ierr = PetscFree2(bas->iranks,bas->ioffset);CHKERRQ(ierr); 99c943f53fSJed Brown ierr = PetscFree(bas->irootloc);CHKERRQ(ierr); 100eb02082bSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 101cd620004SJunchao Zhang { 102cd620004SJunchao Zhang PetscInt i; 103cd620004SJunchao Zhang for (i=0; i<2; i++) {if (bas->irootloc_d[i]) {cudaError_t err = cudaFree(bas->irootloc_d[i]);CHKERRCUDA(err);bas->irootloc_d[i]=NULL;}} 104cd620004SJunchao Zhang } 105eb02082bSJunchao Zhang #endif 106cd620004SJunchao Zhang ierr = PetscSFLinkDestroy(sf,&bas->avail);CHKERRQ(ierr); 107cd620004SJunchao Zhang ierr = PetscSFResetPackFields(sf);CHKERRQ(ierr); 10895fce210SBarry Smith PetscFunctionReturn(0); 10995fce210SBarry Smith } 11095fce210SBarry Smith 11140e23c03SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFDestroy_Basic(PetscSF sf) 11295fce210SBarry Smith { 11395fce210SBarry Smith PetscErrorCode ierr; 11495fce210SBarry Smith 11595fce210SBarry Smith PetscFunctionBegin; 116f6d956f6SStefano Zampini ierr = PetscSFReset_Basic(sf);CHKERRQ(ierr); 11795fce210SBarry Smith ierr = PetscFree(sf->data);CHKERRQ(ierr); 11895fce210SBarry Smith PetscFunctionReturn(0); 11995fce210SBarry Smith } 12095fce210SBarry Smith 12140e23c03SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFView_Basic(PetscSF sf,PetscViewer viewer) 12295fce210SBarry Smith { 12395fce210SBarry Smith PetscErrorCode ierr; 12495fce210SBarry Smith PetscBool iascii; 12595fce210SBarry Smith 12695fce210SBarry Smith PetscFunctionBegin; 12795fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 128b23bfdefSJunchao Zhang if (iascii) {ierr = PetscViewerASCIIPrintf(viewer," sort=%s\n",sf->rankorder ? "rank-order" : "unordered");CHKERRQ(ierr);} 12995fce210SBarry Smith PetscFunctionReturn(0); 13095fce210SBarry Smith } 13195fce210SBarry Smith 132eb02082bSJunchao Zhang static PetscErrorCode PetscSFBcastAndOpBegin_Basic(PetscSF sf,MPI_Datatype unit,PetscMemType rootmtype,const void *rootdata,PetscMemType leafmtype,void *leafdata,MPI_Op op) 13395fce210SBarry Smith { 13495fce210SBarry Smith PetscErrorCode ierr; 135cd620004SJunchao Zhang PetscSFLink link = NULL; 136851d6770SJunchao Zhang MPI_Request *rootreqs = NULL,*leafreqs = NULL; 137cd620004SJunchao Zhang PetscSF_Basic *bas = (PetscSF_Basic*)sf->data; 13895fce210SBarry Smith 13995fce210SBarry Smith PetscFunctionBegin; 140cd620004SJunchao Zhang /* Create a communication link, which provides buffers & MPI requests etc */ 141cd620004SJunchao Zhang ierr = PetscSFLinkCreate(sf,unit,rootmtype,rootdata,leafmtype,leafdata,op,PETSCSF_BCAST,&link);CHKERRQ(ierr); 142cd620004SJunchao Zhang /* Get MPI requests from the link. We do not need buffers explicitly since we use persistent MPI */ 143cd620004SJunchao Zhang ierr = PetscSFLinkGetMPIBuffersAndRequests(sf,link,PETSCSF_ROOT2LEAF,NULL,NULL,&rootreqs,&leafreqs);CHKERRQ(ierr); 144cd620004SJunchao Zhang /* Post Irecv for remote */ 145cd620004SJunchao Zhang ierr = MPI_Startall_irecv(sf->leafbuflen[PETSCSF_REMOTE],unit,sf->nleafreqs,leafreqs);CHKERRQ(ierr); 146cd620004SJunchao Zhang /* Pack rootdata and do Isend for remote */ 147cd620004SJunchao Zhang ierr = PetscSFLinkPackRootData(sf,link,PETSCSF_REMOTE,rootdata);CHKERRQ(ierr); 148cd620004SJunchao Zhang ierr = MPI_Startall_isend(bas->rootbuflen[PETSCSF_REMOTE],unit,bas->nrootreqs,rootreqs);CHKERRQ(ierr); 149cd620004SJunchao Zhang /* Do local BcastAndOp, which overlaps with the irecv/isend above */ 150cd620004SJunchao Zhang ierr = PetscSFLinkBcastAndOpLocal(sf,link,rootdata,leafdata,op);CHKERRQ(ierr); 15195fce210SBarry Smith PetscFunctionReturn(0); 15295fce210SBarry Smith } 15395fce210SBarry Smith 154*00816365SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFBcastAndOpEnd_Basic(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 15595fce210SBarry Smith { 15695fce210SBarry Smith PetscErrorCode ierr; 157cd620004SJunchao Zhang PetscSFLink link = NULL; 15895fce210SBarry Smith 15995fce210SBarry Smith PetscFunctionBegin; 160cd620004SJunchao Zhang /* Retrieve the link used in XxxBegin() with root/leafdata as key */ 161cd620004SJunchao Zhang ierr = PetscSFLinkGetInUse(sf,unit,rootdata,leafdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); 162cd620004SJunchao Zhang /* Wait for the completion of mpi */ 163cd620004SJunchao Zhang ierr = PetscSFLinkMPIWaitall(sf,link,PETSCSF_ROOT2LEAF);CHKERRQ(ierr); 164cd620004SJunchao Zhang /* Unpack leafdata and reclaim the link */ 165cd620004SJunchao Zhang ierr = PetscSFLinkUnpackLeafData(sf,link,PETSCSF_REMOTE,leafdata,op);CHKERRQ(ierr); 166cd620004SJunchao Zhang ierr = PetscSFLinkReclaim(sf,&link);CHKERRQ(ierr); 167cd620004SJunchao Zhang PetscFunctionReturn(0); 168cd620004SJunchao Zhang } 169cd620004SJunchao Zhang 170cd620004SJunchao Zhang /* Shared by ReduceBegin and FetchAndOpBegin */ 171cd620004SJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFLeafToRootBegin_Basic(PetscSF sf,MPI_Datatype unit,PetscMemType leafmtype,const void *leafdata,PetscMemType rootmtype,void *rootdata,MPI_Op op,PetscSFOperation sfop,PetscSFLink *out) 172cd620004SJunchao Zhang { 173cd620004SJunchao Zhang PetscErrorCode ierr; 174cd620004SJunchao Zhang PetscSFLink link; 175cd620004SJunchao Zhang PetscSF_Basic *bas = (PetscSF_Basic*)sf->data; 176cd620004SJunchao Zhang MPI_Request *rootreqs = NULL,*leafreqs = NULL; 177cd620004SJunchao Zhang 178cd620004SJunchao Zhang PetscFunctionBegin; 179cd620004SJunchao Zhang ierr = PetscSFLinkCreate(sf,unit,rootmtype,rootdata,leafmtype,leafdata,op,sfop,&link);CHKERRQ(ierr); 180cd620004SJunchao Zhang ierr = PetscSFLinkGetMPIBuffersAndRequests(sf,link,PETSCSF_LEAF2ROOT,NULL,NULL,&rootreqs,&leafreqs);CHKERRQ(ierr); 181cd620004SJunchao Zhang ierr = MPI_Startall_irecv(bas->rootbuflen[PETSCSF_REMOTE],unit,bas->nrootreqs,rootreqs);CHKERRQ(ierr); 182cd620004SJunchao Zhang ierr = PetscSFLinkPackLeafData(sf,link,PETSCSF_REMOTE,leafdata);CHKERRQ(ierr); 183cd620004SJunchao Zhang ierr = MPI_Startall_isend(sf->leafbuflen[PETSCSF_REMOTE],unit,sf->nleafreqs,leafreqs);CHKERRQ(ierr); 184cd620004SJunchao Zhang *out = link; 18595fce210SBarry Smith PetscFunctionReturn(0); 18695fce210SBarry Smith } 18795fce210SBarry Smith 18895fce210SBarry Smith /* leaf -> root with reduction */ 189eb02082bSJunchao Zhang static PetscErrorCode PetscSFReduceBegin_Basic(PetscSF sf,MPI_Datatype unit,PetscMemType leafmtype,const void *leafdata,PetscMemType rootmtype,void *rootdata,MPI_Op op) 19095fce210SBarry Smith { 19195fce210SBarry Smith PetscErrorCode ierr; 192cd620004SJunchao Zhang PetscSFLink link = NULL; 19395fce210SBarry Smith 19495fce210SBarry Smith PetscFunctionBegin; 195cd620004SJunchao Zhang ierr = PetscSFLeafToRootBegin_Basic(sf,unit,leafmtype,leafdata,rootmtype,rootdata,op,PETSCSF_REDUCE,&link);CHKERRQ(ierr); 196cd620004SJunchao Zhang ierr = PetscSFLinkReduceLocal(sf,link,leafdata,rootdata,op);CHKERRQ(ierr); 19795fce210SBarry Smith PetscFunctionReturn(0); 19895fce210SBarry Smith } 19995fce210SBarry Smith 200*00816365SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFReduceEnd_Basic(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 20195fce210SBarry Smith { 20295fce210SBarry Smith PetscErrorCode ierr; 203cd620004SJunchao Zhang PetscSFLink link = NULL; 20495fce210SBarry Smith 20595fce210SBarry Smith PetscFunctionBegin; 206cd620004SJunchao Zhang ierr = PetscSFLinkGetInUse(sf,unit,rootdata,leafdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); 207cd620004SJunchao Zhang ierr = PetscSFLinkMPIWaitall(sf,link,PETSCSF_LEAF2ROOT);CHKERRQ(ierr); 208cd620004SJunchao Zhang ierr = PetscSFLinkUnpackRootData(sf,link,PETSCSF_REMOTE,rootdata,op);CHKERRQ(ierr); 209cd620004SJunchao Zhang ierr = PetscSFLinkReclaim(sf,&link);CHKERRQ(ierr); 21095fce210SBarry Smith PetscFunctionReturn(0); 21195fce210SBarry Smith } 21295fce210SBarry Smith 213eb02082bSJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFFetchAndOpBegin_Basic(PetscSF sf,MPI_Datatype unit,PetscMemType rootmtype,void *rootdata,PetscMemType leafmtype,const void *leafdata,void *leafupdate,MPI_Op op) 21495fce210SBarry Smith { 21595fce210SBarry Smith PetscErrorCode ierr; 216cd620004SJunchao Zhang PetscSFLink link = NULL; 21795fce210SBarry Smith 21895fce210SBarry Smith PetscFunctionBegin; 219cd620004SJunchao Zhang ierr = PetscSFLeafToRootBegin_Basic(sf,unit,leafmtype,leafdata,rootmtype,rootdata,op,PETSCSF_FETCH,&link);CHKERRQ(ierr); 220cd620004SJunchao Zhang ierr = PetscSFLinkFetchAndOpLocal(sf,link,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 22195fce210SBarry Smith PetscFunctionReturn(0); 22295fce210SBarry Smith } 22395fce210SBarry Smith 224*00816365SJunchao Zhang static PetscErrorCode PetscSFFetchAndOpEnd_Basic(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 22595fce210SBarry Smith { 22695fce210SBarry Smith PetscErrorCode ierr; 227cd620004SJunchao Zhang PetscSFLink link = NULL; 228851d6770SJunchao Zhang MPI_Request *rootreqs = NULL,*leafreqs = NULL; 229cd620004SJunchao Zhang PetscSF_Basic *bas = (PetscSF_Basic*)sf->data; 23095fce210SBarry Smith 23195fce210SBarry Smith PetscFunctionBegin; 232cd620004SJunchao Zhang ierr = PetscSFLinkGetInUse(sf,unit,rootdata,leafdata,PETSC_OWN_POINTER,&link);CHKERRQ(ierr); 23395fce210SBarry Smith /* This implementation could be changed to unpack as receives arrive, at the cost of non-determinism */ 234cd620004SJunchao Zhang ierr = PetscSFLinkMPIWaitall(sf,link,PETSCSF_LEAF2ROOT);CHKERRQ(ierr); 235cd620004SJunchao Zhang /* Do fetch-and-op, the (remote) update results are in rootbuf */ 236cd620004SJunchao Zhang ierr = PetscSFLinkFetchRootData(sf,link,PETSCSF_REMOTE,rootdata,op);CHKERRQ(ierr); 23740e23c03SJunchao Zhang 238cd620004SJunchao Zhang /* Bcast rootbuf to leafupdate */ 239cd620004SJunchao Zhang ierr = PetscSFLinkGetMPIBuffersAndRequests(sf,link,PETSCSF_ROOT2LEAF,NULL,NULL,&rootreqs,&leafreqs);CHKERRQ(ierr); 240cd620004SJunchao Zhang /* Post leaf receives and root sends */ 241cd620004SJunchao Zhang ierr = MPI_Startall_irecv(sf->leafbuflen[PETSCSF_REMOTE],unit,sf->nleafreqs,leafreqs);CHKERRQ(ierr); 242cd620004SJunchao Zhang ierr = MPI_Startall_isend(bas->rootbuflen[PETSCSF_REMOTE],unit,bas->nrootreqs,rootreqs);CHKERRQ(ierr); 243b23bfdefSJunchao Zhang /* Unpack and insert fetched data into leaves */ 244cd620004SJunchao Zhang ierr = PetscSFLinkMPIWaitall(sf,link,PETSCSF_ROOT2LEAF);CHKERRQ(ierr); 245cd620004SJunchao Zhang ierr = PetscSFLinkUnpackLeafData(sf,link,PETSCSF_REMOTE,leafupdate,MPIU_REPLACE);CHKERRQ(ierr); 246cd620004SJunchao Zhang ierr = PetscSFLinkReclaim(sf,&link);CHKERRQ(ierr); 24795fce210SBarry Smith PetscFunctionReturn(0); 24895fce210SBarry Smith } 24995fce210SBarry Smith 25040e23c03SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFGetLeafRanks_Basic(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc) 2518750ddebSJunchao Zhang { 2528750ddebSJunchao Zhang PetscSF_Basic *bas = (PetscSF_Basic*)sf->data; 2538750ddebSJunchao Zhang 2548750ddebSJunchao Zhang PetscFunctionBegin; 2558750ddebSJunchao Zhang if (niranks) *niranks = bas->niranks; 2568750ddebSJunchao Zhang if (iranks) *iranks = bas->iranks; 2578750ddebSJunchao Zhang if (ioffset) *ioffset = bas->ioffset; 2588750ddebSJunchao Zhang if (irootloc) *irootloc = bas->irootloc; 2598750ddebSJunchao Zhang PetscFunctionReturn(0); 2608750ddebSJunchao Zhang } 2618750ddebSJunchao Zhang 262f659e5c7SJunchao Zhang /* An optimized PetscSFCreateEmbeddedSF. We aggresively make use of the established communication on sf. 263f659e5c7SJunchao Zhang We need one bcast on sf, and no communication anymore to build the embedded sf. Note that selected[] 264f659e5c7SJunchao Zhang was sorted before calling the routine. 265f659e5c7SJunchao Zhang */ 266f659e5c7SJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFCreateEmbeddedSF_Basic(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf) 267f659e5c7SJunchao Zhang { 268f659e5c7SJunchao Zhang PetscSF esf; 269cd620004SJunchao Zhang PetscInt esf_nranks,esf_ndranks,*esf_roffset,*esf_rmine,*esf_rremote; 270cd620004SJunchao Zhang PetscInt i,j,p,q,nroots,esf_nleaves,*new_ilocal,nranks,ndranks,niranks,ndiranks,minleaf,maxleaf,maxlocal; 271cd620004SJunchao Zhang char *rootdata,*leafdata,*leafmem; /* Only stores 0 or 1, so we can save memory with char */ 272f659e5c7SJunchao Zhang PetscMPIInt *esf_ranks; 273f659e5c7SJunchao Zhang const PetscMPIInt *ranks,*iranks; 274cd620004SJunchao Zhang const PetscInt *roffset,*rmine,*rremote,*ioffset,*irootloc; 275f659e5c7SJunchao Zhang PetscBool connected; 276f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 277f659e5c7SJunchao Zhang PetscSF_Basic *bas; 278f659e5c7SJunchao Zhang PetscErrorCode ierr; 279f659e5c7SJunchao Zhang 280f659e5c7SJunchao Zhang PetscFunctionBegin; 281f659e5c7SJunchao Zhang ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),&esf);CHKERRQ(ierr); 282f659e5c7SJunchao Zhang ierr = PetscSFSetType(esf,PETSCSFBASIC);CHKERRQ(ierr); /* This optimized routine can only create a basic sf */ 283f659e5c7SJunchao Zhang 284cd620004SJunchao Zhang /* Find out which leaves are still connected to roots in the embedded sf by doing a Bcast */ 285f659e5c7SJunchao Zhang ierr = PetscSFGetGraph(sf,&nroots,NULL,NULL,NULL);CHKERRQ(ierr); 286f659e5c7SJunchao Zhang ierr = PetscSFGetLeafRange(sf,&minleaf,&maxleaf);CHKERRQ(ierr); 287cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 288cd620004SJunchao Zhang ierr = PetscCalloc2(nroots,&rootdata,maxlocal,&leafmem);CHKERRQ(ierr); 289cd620004SJunchao Zhang leafdata = leafmem - minleaf; 290f659e5c7SJunchao Zhang /* Tag selected roots */ 291f659e5c7SJunchao Zhang for (i=0; i<nselected; ++i) rootdata[selected[i]] = 1; 292f659e5c7SJunchao Zhang 293cd620004SJunchao Zhang ierr = PetscSFBcastBegin(sf,MPI_CHAR,rootdata,leafdata);CHKERRQ(ierr); 294cd620004SJunchao Zhang ierr = PetscSFBcastEnd(sf,MPI_CHAR,rootdata,leafdata);CHKERRQ(ierr); 295f659e5c7SJunchao Zhang ierr = PetscSFGetLeafInfo_Basic(sf,&nranks,&ndranks,&ranks,&roffset,&rmine,&rremote);CHKERRQ(ierr); /* Get send info */ 296cd620004SJunchao Zhang esf_nranks = esf_ndranks = esf_nleaves = 0; 297b23bfdefSJunchao Zhang for (i=0; i<nranks; i++) { 298cd620004SJunchao Zhang connected = PETSC_FALSE; /* Is this process still connected to this remote root rank? */ 299cd620004SJunchao Zhang for (j=roffset[i]; j<roffset[i+1]; j++) {if (leafdata[rmine[j]]) {esf_nleaves++; connected = PETSC_TRUE;}} 300f659e5c7SJunchao Zhang if (connected) {esf_nranks++; if (i < ndranks) esf_ndranks++;} 301f659e5c7SJunchao Zhang } 302f659e5c7SJunchao Zhang 303f659e5c7SJunchao Zhang /* Set graph of esf and also set up its outgoing communication (i.e., send info), which is usually done by PetscSFSetUpRanks */ 304cd620004SJunchao Zhang ierr = PetscMalloc1(esf_nleaves,&new_ilocal);CHKERRQ(ierr); 305cd620004SJunchao Zhang ierr = PetscMalloc1(esf_nleaves,&new_iremote);CHKERRQ(ierr); 306cd620004SJunchao Zhang ierr = PetscMalloc4(esf_nranks,&esf_ranks,esf_nranks+1,&esf_roffset,esf_nleaves,&esf_rmine,esf_nleaves,&esf_rremote);CHKERRQ(ierr); 307f659e5c7SJunchao Zhang p = 0; /* Counter for connected root ranks */ 308f659e5c7SJunchao Zhang q = 0; /* Counter for connected leaves */ 309f659e5c7SJunchao Zhang esf_roffset[0] = 0; 310f659e5c7SJunchao Zhang for (i=0; i<nranks; i++) { /* Scan leaf data again to fill esf arrays */ 311f659e5c7SJunchao Zhang connected = PETSC_FALSE; 312cd620004SJunchao Zhang for (j=roffset[i]; j<roffset[i+1]; j++) { 313cd620004SJunchao Zhang if (leafdata[rmine[j]]) { 314f659e5c7SJunchao Zhang esf_rmine[q] = new_ilocal[q] = rmine[j]; 315f659e5c7SJunchao Zhang esf_rremote[q] = rremote[j]; 316f659e5c7SJunchao Zhang new_iremote[q].index = rremote[j]; 317f659e5c7SJunchao Zhang new_iremote[q].rank = ranks[i]; 318f659e5c7SJunchao Zhang connected = PETSC_TRUE; 319f659e5c7SJunchao Zhang q++; 320f659e5c7SJunchao Zhang } 321f659e5c7SJunchao Zhang } 322f659e5c7SJunchao Zhang if (connected) { 323f659e5c7SJunchao Zhang esf_ranks[p] = ranks[i]; 324f659e5c7SJunchao Zhang esf_roffset[p+1] = q; 325f659e5c7SJunchao Zhang p++; 326f659e5c7SJunchao Zhang } 327f659e5c7SJunchao Zhang } 328f659e5c7SJunchao Zhang 329f659e5c7SJunchao Zhang /* SetGraph internally resets the SF, so we only set its fields after the call */ 330cd620004SJunchao Zhang ierr = PetscSFSetGraph(esf,nroots,esf_nleaves,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 331f659e5c7SJunchao Zhang esf->nranks = esf_nranks; 332f659e5c7SJunchao Zhang esf->ndranks = esf_ndranks; 333f659e5c7SJunchao Zhang esf->ranks = esf_ranks; 334f659e5c7SJunchao Zhang esf->roffset = esf_roffset; 335f659e5c7SJunchao Zhang esf->rmine = esf_rmine; 336f659e5c7SJunchao Zhang esf->rremote = esf_rremote; 337cd620004SJunchao Zhang esf->nleafreqs = esf_nranks - esf_ndranks; 338f659e5c7SJunchao Zhang 339f659e5c7SJunchao Zhang /* Set up the incoming communication (i.e., recv info) stored in esf->data, which is usually done by PetscSFSetUp_Basic */ 340f659e5c7SJunchao Zhang bas = (PetscSF_Basic*)esf->data; 341f659e5c7SJunchao Zhang ierr = PetscSFGetRootInfo_Basic(sf,&niranks,&ndiranks,&iranks,&ioffset,&irootloc);CHKERRQ(ierr); /* Get recv info */ 342f659e5c7SJunchao Zhang /* Embedded sf always has simpler communication than the original one. We might allocate longer arrays than needed here. But we 343cd620004SJunchao Zhang we do not care since these arrays are usually short. The benefit is we can fill these arrays by just parsing irootloc once. 344f659e5c7SJunchao Zhang */ 345f659e5c7SJunchao Zhang ierr = PetscMalloc2(niranks,&bas->iranks,niranks+1,&bas->ioffset);CHKERRQ(ierr); 346f659e5c7SJunchao Zhang ierr = PetscMalloc1(ioffset[niranks],&bas->irootloc);CHKERRQ(ierr); 347f659e5c7SJunchao Zhang bas->niranks = bas->ndiranks = bas->ioffset[0] = 0; 348f659e5c7SJunchao Zhang p = 0; /* Counter for connected leaf ranks */ 349f659e5c7SJunchao Zhang q = 0; /* Counter for connected roots */ 350f659e5c7SJunchao Zhang for (i=0; i<niranks; i++) { 351f659e5c7SJunchao Zhang connected = PETSC_FALSE; /* Is the current process still connected to this remote leaf rank? */ 352f659e5c7SJunchao Zhang for (j=ioffset[i]; j<ioffset[i+1]; j++) { 353cd620004SJunchao Zhang if (rootdata[irootloc[j]]) { 354f659e5c7SJunchao Zhang bas->irootloc[q++] = irootloc[j]; 355f659e5c7SJunchao Zhang connected = PETSC_TRUE; 356f659e5c7SJunchao Zhang } 357f659e5c7SJunchao Zhang } 358f659e5c7SJunchao Zhang if (connected) { 359f659e5c7SJunchao Zhang bas->niranks++; 360f659e5c7SJunchao Zhang if (i<ndiranks) bas->ndiranks++; /* Note that order of ranks (including distinguished ranks) is kept */ 361f659e5c7SJunchao Zhang bas->iranks[p] = iranks[i]; 362f659e5c7SJunchao Zhang bas->ioffset[p+1] = q; 363f659e5c7SJunchao Zhang p++; 364f659e5c7SJunchao Zhang } 365f659e5c7SJunchao Zhang } 366f659e5c7SJunchao Zhang bas->itotal = q; 367cd620004SJunchao Zhang bas->nrootreqs = bas->niranks - bas->ndiranks; 368cd620004SJunchao Zhang esf->persistent = PETSC_TRUE; 369cd620004SJunchao Zhang /* Setup packing related fields */ 370cd620004SJunchao Zhang ierr = PetscSFSetUpPackFields(esf);CHKERRQ(ierr); 371f659e5c7SJunchao Zhang 372f659e5c7SJunchao Zhang esf->setupcalled = PETSC_TRUE; /* We have done setup ourselves! */ 373cd620004SJunchao Zhang ierr = PetscFree2(rootdata,leafmem);CHKERRQ(ierr); 374f659e5c7SJunchao Zhang *newsf = esf; 375f659e5c7SJunchao Zhang PetscFunctionReturn(0); 376f659e5c7SJunchao Zhang } 377f659e5c7SJunchao Zhang 3788cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PetscSFCreate_Basic(PetscSF sf) 37995fce210SBarry Smith { 38040e23c03SJunchao Zhang PetscSF_Basic *dat; 38195fce210SBarry Smith PetscErrorCode ierr; 38295fce210SBarry Smith 38395fce210SBarry Smith PetscFunctionBegin; 38495fce210SBarry Smith sf->ops->SetUp = PetscSFSetUp_Basic; 38595fce210SBarry Smith sf->ops->Reset = PetscSFReset_Basic; 38695fce210SBarry Smith sf->ops->Destroy = PetscSFDestroy_Basic; 38795fce210SBarry Smith sf->ops->View = PetscSFView_Basic; 3883482bfa8SJunchao Zhang sf->ops->BcastAndOpBegin = PetscSFBcastAndOpBegin_Basic; 3893482bfa8SJunchao Zhang sf->ops->BcastAndOpEnd = PetscSFBcastAndOpEnd_Basic; 39095fce210SBarry Smith sf->ops->ReduceBegin = PetscSFReduceBegin_Basic; 39195fce210SBarry Smith sf->ops->ReduceEnd = PetscSFReduceEnd_Basic; 39295fce210SBarry Smith sf->ops->FetchAndOpBegin = PetscSFFetchAndOpBegin_Basic; 39395fce210SBarry Smith sf->ops->FetchAndOpEnd = PetscSFFetchAndOpEnd_Basic; 3948750ddebSJunchao Zhang sf->ops->GetLeafRanks = PetscSFGetLeafRanks_Basic; 395f659e5c7SJunchao Zhang sf->ops->CreateEmbeddedSF = PetscSFCreateEmbeddedSF_Basic; 39695fce210SBarry Smith 39740e23c03SJunchao Zhang ierr = PetscNewLog(sf,&dat);CHKERRQ(ierr); 39840e23c03SJunchao Zhang sf->data = (void*)dat; 39995fce210SBarry Smith PetscFunctionReturn(0); 40095fce210SBarry Smith } 401