1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 295fce210SBarry Smith #include <petscctable.h> 395fce210SBarry Smith 495fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 595fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do { \ 695fce210SBarry Smith if (PetscUnlikely(!(sf)->graphset)) \ 795fce210SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \ 895fce210SBarry Smith } while (0) 995fce210SBarry Smith #else 1095fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do {} while (0) 1195fce210SBarry Smith #endif 1295fce210SBarry Smith 1395fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0}; 1495fce210SBarry Smith 158af6ec1cSBarry Smith /*@ 1695fce210SBarry Smith PetscSFCreate - create a star forest communication context 1795fce210SBarry Smith 18d083f849SBarry Smith Collective 1995fce210SBarry Smith 2095fce210SBarry Smith Input Arguments: 2195fce210SBarry Smith . comm - communicator on which the star forest will operate 2295fce210SBarry Smith 2395fce210SBarry Smith Output Arguments: 2495fce210SBarry Smith . sf - new star forest context 2595fce210SBarry Smith 2695fce210SBarry Smith Level: intermediate 2795fce210SBarry Smith 2895fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFDestroy() 2995fce210SBarry Smith @*/ 3095fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf) 3195fce210SBarry Smith { 3295fce210SBarry Smith PetscErrorCode ierr; 3395fce210SBarry Smith PetscSF b; 3495fce210SBarry Smith 3595fce210SBarry Smith PetscFunctionBegin; 3695fce210SBarry Smith PetscValidPointer(sf,2); 37607a6623SBarry Smith ierr = PetscSFInitializePackage();CHKERRQ(ierr); 3895fce210SBarry Smith 3973107ff1SLisandro Dalcin ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr); 4095fce210SBarry Smith 4195fce210SBarry Smith b->nroots = -1; 4295fce210SBarry Smith b->nleaves = -1; 4329046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 4429046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 4595fce210SBarry Smith b->nranks = -1; 4695fce210SBarry Smith b->rankorder = PETSC_TRUE; 4795fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 4895fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 4995fce210SBarry Smith b->graphset = PETSC_FALSE; 5095fce210SBarry Smith 5195fce210SBarry Smith *sf = b; 5295fce210SBarry Smith PetscFunctionReturn(0); 5395fce210SBarry Smith } 5495fce210SBarry Smith 5529046d53SLisandro Dalcin /*@ 5695fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 5795fce210SBarry Smith 5895fce210SBarry Smith Collective 5995fce210SBarry Smith 6095fce210SBarry Smith Input Arguments: 6195fce210SBarry Smith . sf - star forest 6295fce210SBarry Smith 6395fce210SBarry Smith Level: advanced 6495fce210SBarry Smith 6595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy() 6695fce210SBarry Smith @*/ 6795fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf) 6895fce210SBarry Smith { 6995fce210SBarry Smith PetscErrorCode ierr; 7095fce210SBarry Smith 7195fce210SBarry Smith PetscFunctionBegin; 7295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 7379715d56SJed Brown if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);} 7429046d53SLisandro Dalcin sf->nroots = -1; 7529046d53SLisandro Dalcin sf->nleaves = -1; 7629046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 7729046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 7895fce210SBarry Smith sf->mine = NULL; 7995fce210SBarry Smith sf->remote = NULL; 8029046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 8129046d53SLisandro Dalcin ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr); 8295fce210SBarry Smith ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr); 8321c688dcSJed Brown sf->nranks = -1; 8429046d53SLisandro Dalcin ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr); 8529046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 8695fce210SBarry Smith ierr = PetscFree(sf->degree);CHKERRQ(ierr); 8795fce210SBarry Smith if (sf->ingroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);} 8895fce210SBarry Smith if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);} 8995fce210SBarry Smith ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr); 9095fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 9195fce210SBarry Smith PetscFunctionReturn(0); 9295fce210SBarry Smith } 9395fce210SBarry Smith 9495fce210SBarry Smith /*@C 9529046d53SLisandro Dalcin PetscSFSetType - Set the PetscSF communication implementation 9695fce210SBarry Smith 9795fce210SBarry Smith Collective on PetscSF 9895fce210SBarry Smith 9995fce210SBarry Smith Input Parameters: 10095fce210SBarry Smith + sf - the PetscSF context 10195fce210SBarry Smith - type - a known method 10295fce210SBarry Smith 10395fce210SBarry Smith Options Database Key: 10495fce210SBarry Smith . -sf_type <type> - Sets the method; use -help for a list 10595fce210SBarry Smith of available methods (for instance, window, pt2pt, neighbor) 10695fce210SBarry Smith 10795fce210SBarry Smith Notes: 10895fce210SBarry Smith See "include/petscsf.h" for available methods (for instance) 10995fce210SBarry Smith + PETSCSFWINDOW - MPI-2/3 one-sided 11095fce210SBarry Smith - PETSCSFBASIC - basic implementation using MPI-1 two-sided 11195fce210SBarry Smith 11295fce210SBarry Smith Level: intermediate 11395fce210SBarry Smith 11495fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate() 11595fce210SBarry Smith @*/ 11695fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type) 11795fce210SBarry Smith { 11895fce210SBarry Smith PetscErrorCode ierr,(*r)(PetscSF); 11995fce210SBarry Smith PetscBool match; 12095fce210SBarry Smith 12195fce210SBarry Smith PetscFunctionBegin; 12295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 12395fce210SBarry Smith PetscValidCharPointer(type,2); 12495fce210SBarry Smith 12595fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr); 12695fce210SBarry Smith if (match) PetscFunctionReturn(0); 12795fce210SBarry Smith 128adc40e5bSBarry Smith ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr); 12995fce210SBarry Smith if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type); 13029046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 13129046d53SLisandro Dalcin if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);} 13295fce210SBarry Smith ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr); 13395fce210SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr); 13495fce210SBarry Smith ierr = (*r)(sf);CHKERRQ(ierr); 13595fce210SBarry Smith PetscFunctionReturn(0); 13695fce210SBarry Smith } 13795fce210SBarry Smith 13829046d53SLisandro Dalcin /*@C 13929046d53SLisandro Dalcin PetscSFGetType - Get the PetscSF communication implementation 14029046d53SLisandro Dalcin 14129046d53SLisandro Dalcin Not Collective 14229046d53SLisandro Dalcin 14329046d53SLisandro Dalcin Input Parameter: 14429046d53SLisandro Dalcin . sf - the PetscSF context 14529046d53SLisandro Dalcin 14629046d53SLisandro Dalcin Output Parameter: 14729046d53SLisandro Dalcin . type - the PetscSF type name 14829046d53SLisandro Dalcin 14929046d53SLisandro Dalcin Level: intermediate 15029046d53SLisandro Dalcin 15129046d53SLisandro Dalcin .seealso: PetscSFSetType(), PetscSFCreate() 15229046d53SLisandro Dalcin @*/ 15329046d53SLisandro Dalcin PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 15429046d53SLisandro Dalcin { 15529046d53SLisandro Dalcin PetscFunctionBegin; 15629046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1); 15729046d53SLisandro Dalcin PetscValidPointer(type,2); 15829046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 15929046d53SLisandro Dalcin PetscFunctionReturn(0); 16029046d53SLisandro Dalcin } 16129046d53SLisandro Dalcin 162d36d33e4SMatthew G. Knepley /*@ 16395fce210SBarry Smith PetscSFDestroy - destroy star forest 16495fce210SBarry Smith 16595fce210SBarry Smith Collective 16695fce210SBarry Smith 16795fce210SBarry Smith Input Arguments: 16895fce210SBarry Smith . sf - address of star forest 16995fce210SBarry Smith 17095fce210SBarry Smith Level: intermediate 17195fce210SBarry Smith 17295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset() 17395fce210SBarry Smith @*/ 17495fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf) 17595fce210SBarry Smith { 17695fce210SBarry Smith PetscErrorCode ierr; 17795fce210SBarry Smith 17895fce210SBarry Smith PetscFunctionBegin; 17995fce210SBarry Smith if (!*sf) PetscFunctionReturn(0); 18095fce210SBarry Smith PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1); 18129046d53SLisandro Dalcin if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);} 18295fce210SBarry Smith ierr = PetscSFReset(*sf);CHKERRQ(ierr); 18395fce210SBarry Smith if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);} 18495fce210SBarry Smith ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr); 18595fce210SBarry Smith PetscFunctionReturn(0); 18695fce210SBarry Smith } 18795fce210SBarry Smith 18895fce210SBarry Smith /*@ 18995fce210SBarry Smith PetscSFSetUp - set up communication structures 19095fce210SBarry Smith 19195fce210SBarry Smith Collective 19295fce210SBarry Smith 19395fce210SBarry Smith Input Arguments: 19495fce210SBarry Smith . sf - star forest communication object 19595fce210SBarry Smith 19695fce210SBarry Smith Level: beginner 19795fce210SBarry Smith 19895fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType() 19995fce210SBarry Smith @*/ 20095fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf) 20195fce210SBarry Smith { 20295fce210SBarry Smith PetscErrorCode ierr; 20395fce210SBarry Smith 20495fce210SBarry Smith PetscFunctionBegin; 20529046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 20629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 20795fce210SBarry Smith if (sf->setupcalled) PetscFunctionReturn(0); 20895fce210SBarry Smith if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);} 20929046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr); 21095fce210SBarry Smith if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);} 21129046d53SLisandro Dalcin ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr); 21295fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 21395fce210SBarry Smith PetscFunctionReturn(0); 21495fce210SBarry Smith } 21595fce210SBarry Smith 2168af6ec1cSBarry Smith /*@ 21795fce210SBarry Smith PetscSFSetFromOptions - set PetscSF options using the options database 21895fce210SBarry Smith 21995fce210SBarry Smith Logically Collective 22095fce210SBarry Smith 22195fce210SBarry Smith Input Arguments: 22295fce210SBarry Smith . sf - star forest 22395fce210SBarry Smith 22495fce210SBarry Smith Options Database Keys: 22560263706SJed Brown + -sf_type - implementation type, see PetscSFSetType() 22660263706SJed Brown - -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 22795fce210SBarry Smith 22895fce210SBarry Smith Level: intermediate 22995fce210SBarry Smith 23095fce210SBarry Smith .seealso: PetscSFWindowSetSyncType() 23195fce210SBarry Smith @*/ 23295fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 23395fce210SBarry Smith { 23495fce210SBarry Smith PetscSFType deft; 23595fce210SBarry Smith char type[256]; 23695fce210SBarry Smith PetscErrorCode ierr; 23795fce210SBarry Smith PetscBool flg; 23895fce210SBarry Smith 23995fce210SBarry Smith PetscFunctionBegin; 24095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 24195fce210SBarry Smith ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr); 24295fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 24329046d53SLisandro Dalcin ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr); 24495fce210SBarry Smith ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr); 24595fce210SBarry Smith ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr); 246e55864a3SBarry Smith if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);} 24795fce210SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 24895fce210SBarry Smith PetscFunctionReturn(0); 24995fce210SBarry Smith } 25095fce210SBarry Smith 25129046d53SLisandro Dalcin /*@ 25295fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 25395fce210SBarry Smith 25495fce210SBarry Smith Logically Collective 25595fce210SBarry Smith 25695fce210SBarry Smith Input Arguments: 25795fce210SBarry Smith + sf - star forest 25895fce210SBarry Smith - flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic) 25995fce210SBarry Smith 26095fce210SBarry Smith Level: advanced 26195fce210SBarry Smith 26295fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin() 26395fce210SBarry Smith @*/ 26495fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg) 26595fce210SBarry Smith { 26695fce210SBarry Smith 26795fce210SBarry Smith PetscFunctionBegin; 26895fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 26995fce210SBarry Smith PetscValidLogicalCollectiveBool(sf,flg,2); 27095fce210SBarry Smith if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 27195fce210SBarry Smith sf->rankorder = flg; 27295fce210SBarry Smith PetscFunctionReturn(0); 27395fce210SBarry Smith } 27495fce210SBarry Smith 2758af6ec1cSBarry Smith /*@ 27695fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 27795fce210SBarry Smith 27895fce210SBarry Smith Collective 27995fce210SBarry Smith 28095fce210SBarry Smith Input Arguments: 28195fce210SBarry Smith + sf - star forest 28295fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 28395fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 28495fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage 28595fce210SBarry Smith . localmode - copy mode for ilocal 28695fce210SBarry Smith . iremote - remote locations of root vertices for each leaf on the current process 28795fce210SBarry Smith - remotemode - copy mode for iremote 28895fce210SBarry Smith 28995fce210SBarry Smith Level: intermediate 29095fce210SBarry Smith 29195452b02SPatrick Sanan Notes: 29295452b02SPatrick Sanan In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode 29338ab3f8aSBarry Smith 2942ad1e87fSLisandro Dalcin Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they 2952ad1e87fSLisandro Dalcin encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not 2962ad1e87fSLisandro Dalcin needed 2972ad1e87fSLisandro Dalcin 29895fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph() 29995fce210SBarry Smith @*/ 30095fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode) 30195fce210SBarry Smith { 30295fce210SBarry Smith PetscErrorCode ierr; 30395fce210SBarry Smith 30495fce210SBarry Smith PetscFunctionBegin; 30595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 30629046d53SLisandro Dalcin if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4); 30729046d53SLisandro Dalcin if (nleaves > 0) PetscValidPointer(iremote,6); 30829046d53SLisandro Dalcin if (nroots < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots); 30995fce210SBarry Smith if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves); 31029046d53SLisandro Dalcin 31195fce210SBarry Smith ierr = PetscSFReset(sf);CHKERRQ(ierr); 31229046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 31329046d53SLisandro Dalcin 31495fce210SBarry Smith sf->nroots = nroots; 31595fce210SBarry Smith sf->nleaves = nleaves; 31629046d53SLisandro Dalcin 31729046d53SLisandro Dalcin if (nleaves && ilocal) { 31821c688dcSJed Brown PetscInt i; 31929046d53SLisandro Dalcin PetscInt minleaf = PETSC_MAX_INT; 32029046d53SLisandro Dalcin PetscInt maxleaf = PETSC_MIN_INT; 3212ad1e87fSLisandro Dalcin int contiguous = 1; 32229046d53SLisandro Dalcin for (i=0; i<nleaves; i++) { 32329046d53SLisandro Dalcin minleaf = PetscMin(minleaf,ilocal[i]); 32429046d53SLisandro Dalcin maxleaf = PetscMax(maxleaf,ilocal[i]); 3252ad1e87fSLisandro Dalcin contiguous &= (ilocal[i] == i); 32629046d53SLisandro Dalcin } 32729046d53SLisandro Dalcin sf->minleaf = minleaf; 32829046d53SLisandro Dalcin sf->maxleaf = maxleaf; 3292ad1e87fSLisandro Dalcin if (contiguous) { 3302ad1e87fSLisandro Dalcin if (localmode == PETSC_OWN_POINTER) { 3312ad1e87fSLisandro Dalcin ierr = PetscFree(ilocal);CHKERRQ(ierr); 3322ad1e87fSLisandro Dalcin } 3332ad1e87fSLisandro Dalcin ilocal = NULL; 3342ad1e87fSLisandro Dalcin } 33529046d53SLisandro Dalcin } else { 33629046d53SLisandro Dalcin sf->minleaf = 0; 33729046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 33829046d53SLisandro Dalcin } 33929046d53SLisandro Dalcin 34029046d53SLisandro Dalcin if (ilocal) { 34195fce210SBarry Smith switch (localmode) { 34295fce210SBarry Smith case PETSC_COPY_VALUES: 343785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr); 344580bdb30SBarry Smith ierr = PetscArraycpy(sf->mine_alloc,ilocal,nleaves);CHKERRQ(ierr); 34595fce210SBarry Smith sf->mine = sf->mine_alloc; 34695fce210SBarry Smith break; 34795fce210SBarry Smith case PETSC_OWN_POINTER: 34895fce210SBarry Smith sf->mine_alloc = (PetscInt*)ilocal; 34995fce210SBarry Smith sf->mine = sf->mine_alloc; 35095fce210SBarry Smith break; 35195fce210SBarry Smith case PETSC_USE_POINTER: 35229046d53SLisandro Dalcin sf->mine_alloc = NULL; 35395fce210SBarry Smith sf->mine = (PetscInt*)ilocal; 35495fce210SBarry Smith break; 35595fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode"); 35695fce210SBarry Smith } 35795fce210SBarry Smith } 35829046d53SLisandro Dalcin 35995fce210SBarry Smith switch (remotemode) { 36095fce210SBarry Smith case PETSC_COPY_VALUES: 361785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr); 362580bdb30SBarry Smith ierr = PetscArraycpy(sf->remote_alloc,iremote,nleaves);CHKERRQ(ierr); 36395fce210SBarry Smith sf->remote = sf->remote_alloc; 36495fce210SBarry Smith break; 36595fce210SBarry Smith case PETSC_OWN_POINTER: 36695fce210SBarry Smith sf->remote_alloc = (PetscSFNode*)iremote; 36795fce210SBarry Smith sf->remote = sf->remote_alloc; 36895fce210SBarry Smith break; 36995fce210SBarry Smith case PETSC_USE_POINTER: 37029046d53SLisandro Dalcin sf->remote_alloc = NULL; 37195fce210SBarry Smith sf->remote = (PetscSFNode*)iremote; 37295fce210SBarry Smith break; 37395fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode"); 37495fce210SBarry Smith } 37595fce210SBarry Smith 376563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 37729046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 37895fce210SBarry Smith PetscFunctionReturn(0); 37995fce210SBarry Smith } 38095fce210SBarry Smith 38129046d53SLisandro Dalcin /*@ 38295fce210SBarry Smith PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map 38395fce210SBarry Smith 38495fce210SBarry Smith Collective 38595fce210SBarry Smith 38695fce210SBarry Smith Input Arguments: 38795fce210SBarry Smith . sf - star forest to invert 38895fce210SBarry Smith 38995fce210SBarry Smith Output Arguments: 39095fce210SBarry Smith . isf - inverse of sf 39195fce210SBarry Smith 39295fce210SBarry Smith Level: advanced 39395fce210SBarry Smith 39495fce210SBarry Smith Notes: 39595fce210SBarry Smith All roots must have degree 1. 39695fce210SBarry Smith 39795fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 39895fce210SBarry Smith 39995fce210SBarry Smith .seealso: PetscSFSetGraph() 40095fce210SBarry Smith @*/ 40195fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf) 40295fce210SBarry Smith { 40395fce210SBarry Smith PetscErrorCode ierr; 40495fce210SBarry Smith PetscMPIInt rank; 40595fce210SBarry Smith PetscInt i,nroots,nleaves,maxlocal,count,*newilocal; 40695fce210SBarry Smith const PetscInt *ilocal; 40795fce210SBarry Smith PetscSFNode *roots,*leaves; 40895fce210SBarry Smith 40995fce210SBarry Smith PetscFunctionBegin; 41029046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 41129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 41229046d53SLisandro Dalcin PetscValidPointer(isf,2); 41329046d53SLisandro Dalcin 41495fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 41529046d53SLisandro Dalcin maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 41629046d53SLisandro Dalcin 41729046d53SLisandro Dalcin ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 418ae9aee6dSMatthew G. Knepley ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr); 419ae9aee6dSMatthew G. Knepley for (i=0; i<maxlocal; i++) { 42095fce210SBarry Smith leaves[i].rank = rank; 42195fce210SBarry Smith leaves[i].index = i; 42295fce210SBarry Smith } 42395fce210SBarry Smith for (i=0; i <nroots; i++) { 42495fce210SBarry Smith roots[i].rank = -1; 42595fce210SBarry Smith roots[i].index = -1; 42695fce210SBarry Smith } 4278bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 4288bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 42995fce210SBarry Smith 43095fce210SBarry Smith /* Check whether our leaves are sparse */ 43195fce210SBarry Smith for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++; 43295fce210SBarry Smith if (count == nroots) newilocal = NULL; 43395fce210SBarry Smith else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ 434785e854fSJed Brown ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr); 43595fce210SBarry Smith for (i=0,count=0; i<nroots; i++) { 43695fce210SBarry Smith if (roots[i].rank >= 0) { 43795fce210SBarry Smith newilocal[count] = i; 43895fce210SBarry Smith roots[count].rank = roots[i].rank; 43995fce210SBarry Smith roots[count].index = roots[i].index; 44095fce210SBarry Smith count++; 44195fce210SBarry Smith } 44295fce210SBarry Smith } 44395fce210SBarry Smith } 44495fce210SBarry Smith 44595fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr); 44695fce210SBarry Smith ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr); 44795fce210SBarry Smith ierr = PetscFree2(roots,leaves);CHKERRQ(ierr); 44895fce210SBarry Smith PetscFunctionReturn(0); 44995fce210SBarry Smith } 45095fce210SBarry Smith 45195fce210SBarry Smith /*@ 45295fce210SBarry Smith PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph 45395fce210SBarry Smith 45495fce210SBarry Smith Collective 45595fce210SBarry Smith 45695fce210SBarry Smith Input Arguments: 45795fce210SBarry Smith + sf - communication object to duplicate 45895fce210SBarry Smith - opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption) 45995fce210SBarry Smith 46095fce210SBarry Smith Output Arguments: 46195fce210SBarry Smith . newsf - new communication object 46295fce210SBarry Smith 46395fce210SBarry Smith Level: beginner 46495fce210SBarry Smith 46595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph() 46695fce210SBarry Smith @*/ 46795fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf) 46895fce210SBarry Smith { 46929046d53SLisandro Dalcin PetscSFType type; 47095fce210SBarry Smith PetscErrorCode ierr; 47195fce210SBarry Smith 47295fce210SBarry Smith PetscFunctionBegin; 47329046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 47429046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf,opt,2); 47529046d53SLisandro Dalcin PetscValidPointer(newsf,3); 47695fce210SBarry Smith ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr); 47729046d53SLisandro Dalcin ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr); 47829046d53SLisandro Dalcin if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);} 47995fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 48095fce210SBarry Smith PetscInt nroots,nleaves; 48195fce210SBarry Smith const PetscInt *ilocal; 48295fce210SBarry Smith const PetscSFNode *iremote; 48329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 48495fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 48595fce210SBarry Smith ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr); 48695fce210SBarry Smith } 48729046d53SLisandro Dalcin if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);} 48895fce210SBarry Smith PetscFunctionReturn(0); 48995fce210SBarry Smith } 49095fce210SBarry Smith 49195fce210SBarry Smith /*@C 49295fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 49395fce210SBarry Smith 49495fce210SBarry Smith Not Collective 49595fce210SBarry Smith 49695fce210SBarry Smith Input Arguments: 49795fce210SBarry Smith . sf - star forest 49895fce210SBarry Smith 49995fce210SBarry Smith Output Arguments: 50095fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 50195fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 50295fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers 50395fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 50495fce210SBarry Smith 505373e0d91SLisandro Dalcin Notes: 506373e0d91SLisandro Dalcin We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet 507373e0d91SLisandro Dalcin 50895fce210SBarry Smith Level: intermediate 50995fce210SBarry Smith 51095fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph() 51195fce210SBarry Smith @*/ 51295fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote) 51395fce210SBarry Smith { 51495fce210SBarry Smith 51595fce210SBarry Smith PetscFunctionBegin; 51695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 51795fce210SBarry Smith if (nroots) *nroots = sf->nroots; 51895fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 51995fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 52095fce210SBarry Smith if (iremote) *iremote = sf->remote; 52195fce210SBarry Smith PetscFunctionReturn(0); 52295fce210SBarry Smith } 52395fce210SBarry Smith 52429046d53SLisandro Dalcin /*@ 52595fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 52695fce210SBarry Smith 52795fce210SBarry Smith Not Collective 52895fce210SBarry Smith 52995fce210SBarry Smith Input Arguments: 53095fce210SBarry Smith . sf - star forest 53195fce210SBarry Smith 53295fce210SBarry Smith Output Arguments: 53395fce210SBarry Smith + minleaf - minimum active leaf on this process 53495fce210SBarry Smith - maxleaf - maximum active leaf on this process 53595fce210SBarry Smith 53695fce210SBarry Smith Level: developer 53795fce210SBarry Smith 53895fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph() 53995fce210SBarry Smith @*/ 54095fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf) 54195fce210SBarry Smith { 54295fce210SBarry Smith 54395fce210SBarry Smith PetscFunctionBegin; 54495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 54529046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 54695fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 54795fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 54895fce210SBarry Smith PetscFunctionReturn(0); 54995fce210SBarry Smith } 55095fce210SBarry Smith 55195fce210SBarry Smith /*@C 55295fce210SBarry Smith PetscSFView - view a star forest 55395fce210SBarry Smith 55495fce210SBarry Smith Collective 55595fce210SBarry Smith 55695fce210SBarry Smith Input Arguments: 55795fce210SBarry Smith + sf - star forest 55895fce210SBarry Smith - viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD 55995fce210SBarry Smith 56095fce210SBarry Smith Level: beginner 56195fce210SBarry Smith 56295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph() 56395fce210SBarry Smith @*/ 56495fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer) 56595fce210SBarry Smith { 56695fce210SBarry Smith PetscErrorCode ierr; 56795fce210SBarry Smith PetscBool iascii; 56895fce210SBarry Smith PetscViewerFormat format; 56995fce210SBarry Smith 57095fce210SBarry Smith PetscFunctionBegin; 57195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 57295fce210SBarry Smith if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);} 57395fce210SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 57495fce210SBarry Smith PetscCheckSameComm(sf,1,viewer,2); 57580153354SVaclav Hapla if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);} 57695fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 57795fce210SBarry Smith if (iascii) { 57895fce210SBarry Smith PetscMPIInt rank; 57981bfa7aaSJed Brown PetscInt ii,i,j; 58095fce210SBarry Smith 581dae58748SBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr); 58295fce210SBarry Smith ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 58395fce210SBarry Smith if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);} 58480153354SVaclav Hapla if (!sf->graphset) { 58580153354SVaclav Hapla ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr); 58680153354SVaclav Hapla ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 58780153354SVaclav Hapla PetscFunctionReturn(0); 58880153354SVaclav Hapla } 58995fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 5901575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 59195fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr); 59295fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 59395fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr); 59495fce210SBarry Smith } 59595fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 59695fce210SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 59795fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 59881bfa7aaSJed Brown PetscMPIInt *tmpranks,*perm; 59981bfa7aaSJed Brown ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr); 600580bdb30SBarry Smith ierr = PetscArraycpy(tmpranks,sf->ranks,sf->nranks);CHKERRQ(ierr); 60181bfa7aaSJed Brown for (i=0; i<sf->nranks; i++) perm[i] = i; 60281bfa7aaSJed Brown ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr); 60395fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr); 60481bfa7aaSJed Brown for (ii=0; ii<sf->nranks; ii++) { 60581bfa7aaSJed Brown i = perm[ii]; 6067904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr); 60795fce210SBarry Smith for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) { 60895fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr); 60995fce210SBarry Smith } 61095fce210SBarry Smith } 61181bfa7aaSJed Brown ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr); 61295fce210SBarry Smith } 61395fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6141575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 61595fce210SBarry Smith ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 61695fce210SBarry Smith } 61795fce210SBarry Smith PetscFunctionReturn(0); 61895fce210SBarry Smith } 61995fce210SBarry Smith 62095fce210SBarry Smith /*@C 621*dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 62295fce210SBarry Smith 62395fce210SBarry Smith Not Collective 62495fce210SBarry Smith 62595fce210SBarry Smith Input Arguments: 62695fce210SBarry Smith . sf - star forest 62795fce210SBarry Smith 62895fce210SBarry Smith Output Arguments: 62995fce210SBarry Smith + nranks - number of ranks referenced by local part 63095fce210SBarry Smith . ranks - array of ranks 63195fce210SBarry Smith . roffset - offset in rmine/rremote for each rank (length nranks+1) 63295fce210SBarry Smith . rmine - concatenated array holding local indices referencing each remote rank 63395fce210SBarry Smith - rremote - concatenated array holding remote indices referenced for each remote rank 63495fce210SBarry Smith 63595fce210SBarry Smith Level: developer 63695fce210SBarry Smith 637*dec1416fSJunchao Zhang .seealso: PetscSFGetLeafRanks() 63895fce210SBarry Smith @*/ 639*dec1416fSJunchao Zhang PetscErrorCode PetscSFGetRootRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) 64095fce210SBarry Smith { 641*dec1416fSJunchao Zhang PetscErrorCode ierr; 64295fce210SBarry Smith 64395fce210SBarry Smith PetscFunctionBegin; 64495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 64529046d53SLisandro Dalcin if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks"); 646*dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 647*dec1416fSJunchao Zhang ierr = (sf->ops->GetRootRanks)(sf,nranks,ranks,roffset,rmine,rremote);CHKERRQ(ierr); 648*dec1416fSJunchao Zhang } else { 649*dec1416fSJunchao Zhang /* The generic implementation */ 65095fce210SBarry Smith if (nranks) *nranks = sf->nranks; 65195fce210SBarry Smith if (ranks) *ranks = sf->ranks; 65295fce210SBarry Smith if (roffset) *roffset = sf->roffset; 65395fce210SBarry Smith if (rmine) *rmine = sf->rmine; 65495fce210SBarry Smith if (rremote) *rremote = sf->rremote; 655*dec1416fSJunchao Zhang } 65695fce210SBarry Smith PetscFunctionReturn(0); 65795fce210SBarry Smith } 65895fce210SBarry Smith 6598750ddebSJunchao Zhang /*@C 6608750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 6618750ddebSJunchao Zhang 6628750ddebSJunchao Zhang Not Collective 6638750ddebSJunchao Zhang 6648750ddebSJunchao Zhang Input Arguments: 6658750ddebSJunchao Zhang . sf - star forest 6668750ddebSJunchao Zhang 6678750ddebSJunchao Zhang Output Arguments: 6688750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 6698750ddebSJunchao Zhang . iranks - array of ranks 6708750ddebSJunchao Zhang . ioffset - offset in irootloc for each rank (length niranks+1) 6718750ddebSJunchao Zhang - irootloc - concatenated array holding local indices of roots referenced by each leaf rank 6728750ddebSJunchao Zhang 6738750ddebSJunchao Zhang Level: developer 6748750ddebSJunchao Zhang 675*dec1416fSJunchao Zhang .seealso: PetscSFGetRootRanks() 6768750ddebSJunchao Zhang @*/ 6778750ddebSJunchao Zhang PetscErrorCode PetscSFGetLeafRanks(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc) 6788750ddebSJunchao Zhang { 6798750ddebSJunchao Zhang PetscErrorCode ierr; 6808750ddebSJunchao Zhang 6818750ddebSJunchao Zhang PetscFunctionBegin; 6828750ddebSJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 6838750ddebSJunchao Zhang if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks"); 6848750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 6858750ddebSJunchao Zhang ierr = (sf->ops->GetLeafRanks)(sf,niranks,iranks,ioffset,irootloc);CHKERRQ(ierr); 6868750ddebSJunchao Zhang } else { 6878750ddebSJunchao Zhang PetscSFType type; 6888750ddebSJunchao Zhang ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr); 6898750ddebSJunchao Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 6908750ddebSJunchao Zhang } 6918750ddebSJunchao Zhang PetscFunctionReturn(0); 6928750ddebSJunchao Zhang } 6938750ddebSJunchao Zhang 694b5a8e515SJed Brown static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) { 695b5a8e515SJed Brown PetscInt i; 696b5a8e515SJed Brown for (i=0; i<n; i++) { 697b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 698b5a8e515SJed Brown } 699b5a8e515SJed Brown return PETSC_FALSE; 700b5a8e515SJed Brown } 701b5a8e515SJed Brown 70295fce210SBarry Smith /*@C 70321c688dcSJed Brown PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations. 70421c688dcSJed Brown 70521c688dcSJed Brown Collective 70621c688dcSJed Brown 70721c688dcSJed Brown Input Arguments: 708b5a8e515SJed Brown + sf - PetscSF to set up; PetscSFSetGraph() must have been called 709b5a8e515SJed Brown - dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange) 71021c688dcSJed Brown 71121c688dcSJed Brown Level: developer 71221c688dcSJed Brown 713*dec1416fSJunchao Zhang .seealso: PetscSFGetRootRanks() 71421c688dcSJed Brown @*/ 715b5a8e515SJed Brown PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup) 71621c688dcSJed Brown { 71721c688dcSJed Brown PetscErrorCode ierr; 71821c688dcSJed Brown PetscTable table; 71921c688dcSJed Brown PetscTablePosition pos; 720b5a8e515SJed Brown PetscMPIInt size,groupsize,*groupranks; 721247e8311SStefano Zampini PetscInt *rcount,*ranks; 722247e8311SStefano Zampini PetscInt i, irank = -1,orank = -1; 72321c688dcSJed Brown 72421c688dcSJed Brown PetscFunctionBegin; 72521c688dcSJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 72629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 72721c688dcSJed Brown ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr); 72821c688dcSJed Brown ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr); 72921c688dcSJed Brown for (i=0; i<sf->nleaves; i++) { 73021c688dcSJed Brown /* Log 1-based rank */ 73121c688dcSJed Brown ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr); 73221c688dcSJed Brown } 73321c688dcSJed Brown ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr); 73421c688dcSJed Brown ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr); 73521c688dcSJed Brown ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr); 73621c688dcSJed Brown ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr); 73721c688dcSJed Brown for (i=0; i<sf->nranks; i++) { 73821c688dcSJed Brown ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr); 73921c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 74021c688dcSJed Brown } 74121c688dcSJed Brown ierr = PetscTableDestroy(&table);CHKERRQ(ierr); 742b5a8e515SJed Brown 743b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 744b5a8e515SJed Brown { 7457fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 746b5a8e515SJed Brown PetscMPIInt *dgroupranks; 747b5a8e515SJed Brown ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 748b5a8e515SJed Brown ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr); 749b5a8e515SJed Brown ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr); 750b5a8e515SJed Brown ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr); 751b5a8e515SJed Brown for (i=0; i<groupsize; i++) dgroupranks[i] = i; 752f3fc9a17SJed Brown if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);} 753b5a8e515SJed Brown ierr = MPI_Group_free(&group);CHKERRQ(ierr); 754b5a8e515SJed Brown ierr = PetscFree(dgroupranks);CHKERRQ(ierr); 755b5a8e515SJed Brown } 756b5a8e515SJed Brown 757b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 758b5a8e515SJed Brown for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) { 759b5a8e515SJed Brown for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */ 760b5a8e515SJed Brown if (InList(ranks[i],groupsize,groupranks)) break; 761b5a8e515SJed Brown } 762b5a8e515SJed Brown for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 763b5a8e515SJed Brown if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break; 764b5a8e515SJed Brown } 765b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 766b5a8e515SJed Brown PetscInt tmprank,tmpcount; 767247e8311SStefano Zampini 768b5a8e515SJed Brown tmprank = ranks[i]; 769b5a8e515SJed Brown tmpcount = rcount[i]; 770b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 771b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 772b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 773b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 774b5a8e515SJed Brown sf->ndranks++; 775b5a8e515SJed Brown } 776b5a8e515SJed Brown } 777b5a8e515SJed Brown ierr = PetscFree(groupranks);CHKERRQ(ierr); 778b5a8e515SJed Brown ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr); 779b5a8e515SJed Brown ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr); 78021c688dcSJed Brown sf->roffset[0] = 0; 78121c688dcSJed Brown for (i=0; i<sf->nranks; i++) { 78221c688dcSJed Brown ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr); 78321c688dcSJed Brown sf->roffset[i+1] = sf->roffset[i] + rcount[i]; 78421c688dcSJed Brown rcount[i] = 0; 78521c688dcSJed Brown } 786247e8311SStefano Zampini for (i=0, irank = -1, orank = -1; i<sf->nleaves; i++) { 787247e8311SStefano Zampini /* short circuit */ 788247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 78921c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 790b5a8e515SJed Brown ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr); 791b5a8e515SJed Brown if (irank < 0) { 792b5a8e515SJed Brown ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr); 793b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 79421c688dcSJed Brown } 795247e8311SStefano Zampini orank = sf->remote[i].rank; 796247e8311SStefano Zampini } 797b5a8e515SJed Brown if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank); 79821c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 79921c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 80021c688dcSJed Brown rcount[irank]++; 80121c688dcSJed Brown } 80221c688dcSJed Brown ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr); 80321c688dcSJed Brown PetscFunctionReturn(0); 80421c688dcSJed Brown } 80521c688dcSJed Brown 80621c688dcSJed Brown /*@C 80795fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 80895fce210SBarry Smith 80995fce210SBarry Smith Collective 81095fce210SBarry Smith 81195fce210SBarry Smith Input Argument: 81295fce210SBarry Smith . sf - star forest 81395fce210SBarry Smith 81495fce210SBarry Smith Output Arguments: 81595fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 81695fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 81795fce210SBarry Smith 81895fce210SBarry Smith Level: developer 81995fce210SBarry Smith 82095fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow() 82195fce210SBarry Smith @*/ 82295fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing) 82395fce210SBarry Smith { 82495fce210SBarry Smith PetscErrorCode ierr; 8257fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 82695fce210SBarry Smith 82795fce210SBarry Smith PetscFunctionBegin; 82829046d53SLisandro Dalcin if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining groups"); 82995fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 83095fce210SBarry Smith PetscInt i; 83195fce210SBarry Smith const PetscInt *indegree; 83295fce210SBarry Smith PetscMPIInt rank,*outranks,*inranks; 83395fce210SBarry Smith PetscSFNode *remote; 83495fce210SBarry Smith PetscSF bgcount; 83595fce210SBarry Smith 83695fce210SBarry Smith /* Compute the number of incoming ranks */ 837785e854fSJed Brown ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr); 83895fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 83995fce210SBarry Smith remote[i].rank = sf->ranks[i]; 84095fce210SBarry Smith remote[i].index = 0; 84195fce210SBarry Smith } 84295fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr); 84395fce210SBarry Smith ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 84495fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr); 84595fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr); 84695fce210SBarry Smith 84795fce210SBarry Smith /* Enumerate the incoming ranks */ 848dcca6d9dSJed Brown ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr); 84995fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 85095fce210SBarry Smith for (i=0; i<sf->nranks; i++) outranks[i] = rank; 85195fce210SBarry Smith ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 85295fce210SBarry Smith ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 85395fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 85495fce210SBarry Smith ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr); 85595fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 85695fce210SBarry Smith ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr); 85795fce210SBarry Smith ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr); 85895fce210SBarry Smith } 85995fce210SBarry Smith *incoming = sf->ingroup; 86095fce210SBarry Smith 86195fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 86295fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 86395fce210SBarry Smith ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr); 86495fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 86595fce210SBarry Smith } 86695fce210SBarry Smith *outgoing = sf->outgroup; 86795fce210SBarry Smith PetscFunctionReturn(0); 86895fce210SBarry Smith } 86995fce210SBarry Smith 87029046d53SLisandro Dalcin /*@ 87195fce210SBarry Smith PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters 87295fce210SBarry Smith 87395fce210SBarry Smith Collective 87495fce210SBarry Smith 87595fce210SBarry Smith Input Argument: 87695fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 87795fce210SBarry Smith 87895fce210SBarry Smith Output Arguments: 87995fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 88095fce210SBarry Smith 88195fce210SBarry Smith Level: developer 88295fce210SBarry Smith 88395fce210SBarry Smith Notes: 88495fce210SBarry Smith 88595fce210SBarry Smith In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi 88695fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 88795fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 88895fce210SBarry Smith 889673100f5SVaclav Hapla .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin(), PetscSFComputeMultiRootOriginalNumbering() 89095fce210SBarry Smith @*/ 89195fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi) 89295fce210SBarry Smith { 89395fce210SBarry Smith PetscErrorCode ierr; 89495fce210SBarry Smith 89595fce210SBarry Smith PetscFunctionBegin; 89695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 89795fce210SBarry Smith PetscValidPointer(multi,2); 89895fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 89995fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 90095fce210SBarry Smith *multi = sf->multi; 90195fce210SBarry Smith PetscFunctionReturn(0); 90295fce210SBarry Smith } 90395fce210SBarry Smith if (!sf->multi) { 90495fce210SBarry Smith const PetscInt *indegree; 9059837ea96SMatthew G. Knepley PetscInt i,*inoffset,*outones,*outoffset,maxlocal; 90695fce210SBarry Smith PetscSFNode *remote; 90729046d53SLisandro Dalcin maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 90895fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr); 90995fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr); 9109837ea96SMatthew G. Knepley ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr); 91195fce210SBarry Smith inoffset[0] = 0; 91295fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i]; 9139837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outones[i] = 1; 914dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 915dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 91695fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 91795fce210SBarry Smith #if 0 91895fce210SBarry Smith #if defined(PETSC_USE_DEBUG) /* Check that the expected number of increments occurred */ 91995fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 92095fce210SBarry Smith if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp"); 92195fce210SBarry Smith } 92295fce210SBarry Smith #endif 92395fce210SBarry Smith #endif 924785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr); 92595fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 92695fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 92738e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 92895fce210SBarry Smith } 92995fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 93001365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 93195fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 93295fce210SBarry Smith PetscMPIInt rank; 93395fce210SBarry Smith PetscInt *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree; 93495fce210SBarry Smith PetscSFNode *newremote; 93595fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 93695fce210SBarry Smith for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]); 9379837ea96SMatthew G. Knepley ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr); 9389837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outranks[i] = rank; 9398bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 9408bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 94195fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 94295fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 94395fce210SBarry Smith PetscInt j; 94495fce210SBarry Smith for (j=0; j<indegree[i]; j++) tmpoffset[j] = j; 94595fce210SBarry Smith ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr); 94695fce210SBarry Smith for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 94795fce210SBarry Smith } 94895fce210SBarry Smith ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 94995fce210SBarry Smith ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 950785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr); 95195fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 95295fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 95301365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 95495fce210SBarry Smith } 95501365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 95695fce210SBarry Smith ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr); 95795fce210SBarry Smith } 95895fce210SBarry Smith ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr); 95995fce210SBarry Smith } 96095fce210SBarry Smith *multi = sf->multi; 96195fce210SBarry Smith PetscFunctionReturn(0); 96295fce210SBarry Smith } 96395fce210SBarry Smith 96495fce210SBarry Smith /*@C 96595fce210SBarry Smith PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices 96695fce210SBarry Smith 96795fce210SBarry Smith Collective 96895fce210SBarry Smith 96995fce210SBarry Smith Input Arguments: 97095fce210SBarry Smith + sf - original star forest 971ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 972ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 97395fce210SBarry Smith 97495fce210SBarry Smith Output Arguments: 97595fce210SBarry Smith . newsf - new star forest 97695fce210SBarry Smith 97795fce210SBarry Smith Level: advanced 97895fce210SBarry Smith 97995fce210SBarry Smith Note: 98095fce210SBarry Smith To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can 98195fce210SBarry Smith be done by calling PetscSFGetGraph(). 98295fce210SBarry Smith 98395fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph() 98495fce210SBarry Smith @*/ 985ba2a7774SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf) 98695fce210SBarry Smith { 987ba2a7774SJunchao Zhang PetscInt *rootdata,*leafdata,*new_ilocal; 988ba2a7774SJunchao Zhang PetscSFNode *new_iremote; 989ba2a7774SJunchao Zhang const PetscInt *ilocal; 990ba2a7774SJunchao Zhang const PetscSFNode *iremote; 991ba2a7774SJunchao Zhang PetscInt nleaves,nroots,n,i,new_nleaves = 0; 992ba2a7774SJunchao Zhang PetscSF tmpsf; 9930511a646SMatthew G. Knepley PetscErrorCode ierr; 99495fce210SBarry Smith 99595fce210SBarry Smith PetscFunctionBegin; 99695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 99729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 998ba2a7774SJunchao Zhang if (nselected) PetscValidPointer(selected,3); 99995fce210SBarry Smith PetscValidPointer(newsf,4); 1000524e35f8SStefano Zampini ierr = PetscLogEventBegin(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr); 10010511a646SMatthew G. Knepley 1002ba2a7774SJunchao Zhang /* Find out which leaves (not leaf data items) are still connected to roots in the embedded sf */ 1003ba2a7774SJunchao Zhang ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 1004ba2a7774SJunchao Zhang ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&tmpsf);CHKERRQ(ierr); 1005ba2a7774SJunchao Zhang ierr = PetscSFSetGraph(tmpsf,nroots,nleaves,NULL/*contiguous*/,PETSC_USE_POINTER,iremote,PETSC_USE_POINTER);CHKERRQ(ierr); 1006ba2a7774SJunchao Zhang ierr = PetscCalloc2(nroots,&rootdata,nleaves,&leafdata);CHKERRQ(ierr); 1007ba2a7774SJunchao Zhang for (i=0; i<nselected; ++i) { 100846fbb50bSJunchao Zhang if (selected[i] < 0 || selected[i] >= nroots) SETERRQ2(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Root index %D is not in [0,%D)",selected[i],nroots); 1009ba2a7774SJunchao Zhang rootdata[selected[i]] = 1; 1010ba2a7774SJunchao Zhang } 1011ba2a7774SJunchao Zhang 1012ba2a7774SJunchao Zhang ierr = PetscSFBcastBegin(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 1013ba2a7774SJunchao Zhang ierr = PetscSFBcastEnd(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 1014ba2a7774SJunchao Zhang ierr = PetscSFDestroy(&tmpsf);CHKERRQ(ierr); 1015ba2a7774SJunchao Zhang 1016ba2a7774SJunchao Zhang /* Build newsf with leaves that are still connected */ 1017ba2a7774SJunchao Zhang for (i = 0; i < nleaves; ++i) new_nleaves += leafdata[i]; 1018ba2a7774SJunchao Zhang ierr = PetscMalloc1(new_nleaves,&new_ilocal);CHKERRQ(ierr); 1019ba2a7774SJunchao Zhang ierr = PetscMalloc1(new_nleaves,&new_iremote);CHKERRQ(ierr); 1020ba2a7774SJunchao Zhang for (i = 0, n = 0; i < nleaves; ++i) { 1021ba2a7774SJunchao Zhang if (leafdata[i]) { 1022ba2a7774SJunchao Zhang new_ilocal[n] = sf->mine ? sf->mine[i] : i; 1023ba2a7774SJunchao Zhang new_iremote[n].rank = sf->remote[i].rank; 1024ba2a7774SJunchao Zhang new_iremote[n].index = sf->remote[i].index; 1025fc1ede2bSMatthew G. Knepley ++n; 102695fce210SBarry Smith } 102795fce210SBarry Smith } 102841bb73faSSatish Balay if (n != new_nleaves) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"There is a size mismatch in the SF embedding, %D != %D",n,new_nleaves); 1029ba2a7774SJunchao Zhang ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,newsf);CHKERRQ(ierr); 1030ba2a7774SJunchao Zhang ierr = PetscSFSetGraph(*newsf,nroots,new_nleaves,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 103195fce210SBarry Smith ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr); 1032524e35f8SStefano Zampini ierr = PetscSFSetUp(*newsf);CHKERRQ(ierr); 1033524e35f8SStefano Zampini ierr = PetscLogEventEnd(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr); 103495fce210SBarry Smith PetscFunctionReturn(0); 103595fce210SBarry Smith } 103695fce210SBarry Smith 10372f5fb4c2SMatthew G. Knepley /*@C 10382f5fb4c2SMatthew G. Knepley PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices 10392f5fb4c2SMatthew G. Knepley 10402f5fb4c2SMatthew G. Knepley Collective 10412f5fb4c2SMatthew G. Knepley 10422f5fb4c2SMatthew G. Knepley Input Arguments: 10432f5fb4c2SMatthew G. Knepley + sf - original star forest 10442f5fb4c2SMatthew G. Knepley . nleaves - number of leaves to select on this process 10452f5fb4c2SMatthew G. Knepley - selected - selected leaves on this process 10462f5fb4c2SMatthew G. Knepley 10472f5fb4c2SMatthew G. Knepley Output Arguments: 10482f5fb4c2SMatthew G. Knepley . newsf - new star forest 10492f5fb4c2SMatthew G. Knepley 10502f5fb4c2SMatthew G. Knepley Level: advanced 10512f5fb4c2SMatthew G. Knepley 10522f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph() 10532f5fb4c2SMatthew G. Knepley @*/ 10542f5fb4c2SMatthew G. Knepley PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nleaves, const PetscInt *selected, PetscSF *newsf) 10552f5fb4c2SMatthew G. Knepley { 10562f5fb4c2SMatthew G. Knepley PetscSFNode *iremote; 10572f5fb4c2SMatthew G. Knepley PetscInt *ilocal; 10582f5fb4c2SMatthew G. Knepley PetscInt i; 10592f5fb4c2SMatthew G. Knepley PetscErrorCode ierr; 10602f5fb4c2SMatthew G. Knepley 10612f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 10622f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 106329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10642f5fb4c2SMatthew G. Knepley if (nleaves) PetscValidPointer(selected, 3); 10652f5fb4c2SMatthew G. Knepley PetscValidPointer(newsf, 4); 10662f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 10672f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &iremote);CHKERRQ(ierr); 10682f5fb4c2SMatthew G. Knepley for (i = 0; i < nleaves; ++i) { 10692f5fb4c2SMatthew G. Knepley const PetscInt l = selected[i]; 10702f5fb4c2SMatthew G. Knepley 10712f5fb4c2SMatthew G. Knepley ilocal[i] = sf->mine ? sf->mine[l] : l; 10722f5fb4c2SMatthew G. Knepley iremote[i].rank = sf->remote[l].rank; 10732f5fb4c2SMatthew G. Knepley iremote[i].index = sf->remote[l].index; 10742f5fb4c2SMatthew G. Knepley } 10752f5fb4c2SMatthew G. Knepley ierr = PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, newsf);CHKERRQ(ierr); 10762f5fb4c2SMatthew G. Knepley ierr = PetscSFSetGraph(*newsf, sf->nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 10772f5fb4c2SMatthew G. Knepley PetscFunctionReturn(0); 10782f5fb4c2SMatthew G. Knepley } 10792f5fb4c2SMatthew G. Knepley 108095fce210SBarry Smith /*@C 108195fce210SBarry Smith PetscSFBcastBegin - begin pointwise broadcast to be concluded with call to PetscSFBcastEnd() 108295fce210SBarry Smith 108395fce210SBarry Smith Collective on PetscSF 108495fce210SBarry Smith 108595fce210SBarry Smith Input Arguments: 108695fce210SBarry Smith + sf - star forest on which to communicate 108795fce210SBarry Smith . unit - data type associated with each node 108895fce210SBarry Smith - rootdata - buffer to broadcast 108995fce210SBarry Smith 109095fce210SBarry Smith Output Arguments: 109195fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 109295fce210SBarry Smith 109395fce210SBarry Smith Level: intermediate 109495fce210SBarry Smith 109595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFView(), PetscSFBcastEnd(), PetscSFReduceBegin() 109695fce210SBarry Smith @*/ 109795fce210SBarry Smith PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 109895fce210SBarry Smith { 109995fce210SBarry Smith PetscErrorCode ierr; 110095fce210SBarry Smith 110195fce210SBarry Smith PetscFunctionBegin; 110295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 110395fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 110429046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 110595fce210SBarry Smith ierr = (*sf->ops->BcastBegin)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 1106563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 110795fce210SBarry Smith PetscFunctionReturn(0); 110895fce210SBarry Smith } 110995fce210SBarry Smith 111095fce210SBarry Smith /*@C 111195fce210SBarry Smith PetscSFBcastEnd - end a broadcast operation started with PetscSFBcastBegin() 111295fce210SBarry Smith 111395fce210SBarry Smith Collective 111495fce210SBarry Smith 111595fce210SBarry Smith Input Arguments: 111695fce210SBarry Smith + sf - star forest 111795fce210SBarry Smith . unit - data type 111895fce210SBarry Smith - rootdata - buffer to broadcast 111995fce210SBarry Smith 112095fce210SBarry Smith Output Arguments: 112195fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 112295fce210SBarry Smith 112395fce210SBarry Smith Level: intermediate 112495fce210SBarry Smith 112595fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 112695fce210SBarry Smith @*/ 112795fce210SBarry Smith PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 112895fce210SBarry Smith { 112995fce210SBarry Smith PetscErrorCode ierr; 113095fce210SBarry Smith 113195fce210SBarry Smith PetscFunctionBegin; 113295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 113395fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 113429046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 113595fce210SBarry Smith ierr = (*sf->ops->BcastEnd)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 1136563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 113795fce210SBarry Smith PetscFunctionReturn(0); 113895fce210SBarry Smith } 113995fce210SBarry Smith 114095fce210SBarry Smith /*@C 11413482bfa8SJunchao Zhang PetscSFBcastAndOpBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to PetscSFBcastAndOpEnd() 11423482bfa8SJunchao Zhang 11433482bfa8SJunchao Zhang Collective on PetscSF 11443482bfa8SJunchao Zhang 11453482bfa8SJunchao Zhang Input Arguments: 11463482bfa8SJunchao Zhang + sf - star forest on which to communicate 11473482bfa8SJunchao Zhang . unit - data type associated with each node 11483482bfa8SJunchao Zhang . rootdata - buffer to broadcast 11493482bfa8SJunchao Zhang - op - operation to use for reduction 11503482bfa8SJunchao Zhang 11513482bfa8SJunchao Zhang Output Arguments: 11523482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 11533482bfa8SJunchao Zhang 11543482bfa8SJunchao Zhang Level: intermediate 11553482bfa8SJunchao Zhang 11563482bfa8SJunchao Zhang .seealso: PetscSFBcastAndOpEnd(), PetscSFBcastBegin(), PetscSFBcastEnd() 11573482bfa8SJunchao Zhang @*/ 11583482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 11593482bfa8SJunchao Zhang { 11603482bfa8SJunchao Zhang PetscErrorCode ierr; 11613482bfa8SJunchao Zhang 11623482bfa8SJunchao Zhang PetscFunctionBegin; 11633482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 11643482bfa8SJunchao Zhang ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 11653482bfa8SJunchao Zhang ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 11663482bfa8SJunchao Zhang ierr = (*sf->ops->BcastAndOpBegin)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr); 11673482bfa8SJunchao Zhang ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 11683482bfa8SJunchao Zhang PetscFunctionReturn(0); 11693482bfa8SJunchao Zhang } 11703482bfa8SJunchao Zhang 11713482bfa8SJunchao Zhang /*@C 11723482bfa8SJunchao Zhang PetscSFBcastAndOpEnd - end a broadcast & reduce operation started with PetscSFBcastAndOpBegin() 11733482bfa8SJunchao Zhang 11743482bfa8SJunchao Zhang Collective 11753482bfa8SJunchao Zhang 11763482bfa8SJunchao Zhang Input Arguments: 11773482bfa8SJunchao Zhang + sf - star forest 11783482bfa8SJunchao Zhang . unit - data type 11793482bfa8SJunchao Zhang . rootdata - buffer to broadcast 11803482bfa8SJunchao Zhang - op - operation to use for reduction 11813482bfa8SJunchao Zhang 11823482bfa8SJunchao Zhang Output Arguments: 11833482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 11843482bfa8SJunchao Zhang 11853482bfa8SJunchao Zhang Level: intermediate 11863482bfa8SJunchao Zhang 11873482bfa8SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 11883482bfa8SJunchao Zhang @*/ 11893482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 11903482bfa8SJunchao Zhang { 11913482bfa8SJunchao Zhang PetscErrorCode ierr; 11923482bfa8SJunchao Zhang 11933482bfa8SJunchao Zhang PetscFunctionBegin; 11943482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 11953482bfa8SJunchao Zhang ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 11963482bfa8SJunchao Zhang ierr = PetscLogEventBegin(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 11973482bfa8SJunchao Zhang ierr = (*sf->ops->BcastAndOpEnd)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr); 11983482bfa8SJunchao Zhang ierr = PetscLogEventEnd(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 11993482bfa8SJunchao Zhang PetscFunctionReturn(0); 12003482bfa8SJunchao Zhang } 12013482bfa8SJunchao Zhang 12023482bfa8SJunchao Zhang /*@C 120395fce210SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd() 120495fce210SBarry Smith 120595fce210SBarry Smith Collective 120695fce210SBarry Smith 120795fce210SBarry Smith Input Arguments: 120895fce210SBarry Smith + sf - star forest 120995fce210SBarry Smith . unit - data type 121095fce210SBarry Smith . leafdata - values to reduce 121195fce210SBarry Smith - op - reduction operation 121295fce210SBarry Smith 121395fce210SBarry Smith Output Arguments: 121495fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 121595fce210SBarry Smith 121695fce210SBarry Smith Level: intermediate 121795fce210SBarry Smith 121895fce210SBarry Smith .seealso: PetscSFBcastBegin() 121995fce210SBarry Smith @*/ 122095fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 122195fce210SBarry Smith { 122295fce210SBarry Smith PetscErrorCode ierr; 122395fce210SBarry Smith 122495fce210SBarry Smith PetscFunctionBegin; 122595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 122695fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 122729046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 122895fce210SBarry Smith ierr = (sf->ops->ReduceBegin)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 1229563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 123095fce210SBarry Smith PetscFunctionReturn(0); 123195fce210SBarry Smith } 123295fce210SBarry Smith 123395fce210SBarry Smith /*@C 123495fce210SBarry Smith PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin() 123595fce210SBarry Smith 123695fce210SBarry Smith Collective 123795fce210SBarry Smith 123895fce210SBarry Smith Input Arguments: 123995fce210SBarry Smith + sf - star forest 124095fce210SBarry Smith . unit - data type 124195fce210SBarry Smith . leafdata - values to reduce 124295fce210SBarry Smith - op - reduction operation 124395fce210SBarry Smith 124495fce210SBarry Smith Output Arguments: 124595fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 124695fce210SBarry Smith 124795fce210SBarry Smith Level: intermediate 124895fce210SBarry Smith 124995fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd() 125095fce210SBarry Smith @*/ 125195fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 125295fce210SBarry Smith { 125395fce210SBarry Smith PetscErrorCode ierr; 125495fce210SBarry Smith 125595fce210SBarry Smith PetscFunctionBegin; 125695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 125795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 125829046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 125995fce210SBarry Smith ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 1260563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 126195fce210SBarry Smith PetscFunctionReturn(0); 126295fce210SBarry Smith } 126395fce210SBarry Smith 126495fce210SBarry Smith /*@C 126595fce210SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd() 126695fce210SBarry Smith 126795fce210SBarry Smith Collective 126895fce210SBarry Smith 126995fce210SBarry Smith Input Arguments: 127095fce210SBarry Smith . sf - star forest 127195fce210SBarry Smith 127295fce210SBarry Smith Output Arguments: 127395fce210SBarry Smith . degree - degree of each root vertex 127495fce210SBarry Smith 127595fce210SBarry Smith Level: advanced 127695fce210SBarry Smith 1277ffe67aa5SVáclav Hapla Notes: 1278ffe67aa5SVáclav Hapla The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it. 1279ffe67aa5SVáclav Hapla 128095fce210SBarry Smith .seealso: PetscSFGatherBegin() 128195fce210SBarry Smith @*/ 128295fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree) 128395fce210SBarry Smith { 128495fce210SBarry Smith PetscErrorCode ierr; 128595fce210SBarry Smith 128695fce210SBarry Smith PetscFunctionBegin; 128795fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 128895fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 128995fce210SBarry Smith PetscValidPointer(degree,2); 1290803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 129129046d53SLisandro Dalcin PetscInt i, nroots = sf->nroots, maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 1292803bd9e8SMatthew G. Knepley if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 129329046d53SLisandro Dalcin ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr); 129429046d53SLisandro Dalcin ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 129529046d53SLisandro Dalcin for (i=0; i<nroots; i++) sf->degree[i] = 0; 12969837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1; 1297dbd2ff41SBarry Smith ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 129895fce210SBarry Smith } 129995fce210SBarry Smith *degree = NULL; 130095fce210SBarry Smith PetscFunctionReturn(0); 130195fce210SBarry Smith } 130295fce210SBarry Smith 130395fce210SBarry Smith /*@C 130495fce210SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin() 130595fce210SBarry Smith 130695fce210SBarry Smith Collective 130795fce210SBarry Smith 130895fce210SBarry Smith Input Arguments: 130995fce210SBarry Smith . sf - star forest 131095fce210SBarry Smith 131195fce210SBarry Smith Output Arguments: 131295fce210SBarry Smith . degree - degree of each root vertex 131395fce210SBarry Smith 131495fce210SBarry Smith Level: developer 131595fce210SBarry Smith 1316ffe67aa5SVáclav Hapla Notes: 1317ffe67aa5SVáclav Hapla The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it. 1318ffe67aa5SVáclav Hapla 131995fce210SBarry Smith .seealso: 132095fce210SBarry Smith @*/ 132195fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree) 132295fce210SBarry Smith { 132395fce210SBarry Smith PetscErrorCode ierr; 132495fce210SBarry Smith 132595fce210SBarry Smith PetscFunctionBegin; 132695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 132795fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 132829046d53SLisandro Dalcin PetscValidPointer(degree,2); 132995fce210SBarry Smith if (!sf->degreeknown) { 133029046d53SLisandro Dalcin if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 1331dbd2ff41SBarry Smith ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 133295fce210SBarry Smith ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr); 133395fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 133495fce210SBarry Smith } 133595fce210SBarry Smith *degree = sf->degree; 133695fce210SBarry Smith PetscFunctionReturn(0); 133795fce210SBarry Smith } 133895fce210SBarry Smith 1339673100f5SVaclav Hapla 1340673100f5SVaclav Hapla /*@C 134166dfcd1aSVaclav Hapla PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by PetscSFGetMultiSF()). 134266dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1343673100f5SVaclav Hapla 1344673100f5SVaclav Hapla Collective 1345673100f5SVaclav Hapla 1346673100f5SVaclav Hapla Input Arguments: 1347673100f5SVaclav Hapla + sf - star forest 1348673100f5SVaclav Hapla - degree - degree of each root vertex, computed with PetscSFComputeDegreeBegin()/PetscSFComputeDegreeEnd() 1349673100f5SVaclav Hapla 1350673100f5SVaclav Hapla Output Arguments: 135166dfcd1aSVaclav Hapla + nMultiRoots - (optional) number of multi-roots (roots of multi-SF) 135266dfcd1aSVaclav Hapla - multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots 1353673100f5SVaclav Hapla 1354673100f5SVaclav Hapla Level: developer 1355673100f5SVaclav Hapla 1356ffe67aa5SVáclav Hapla Notes: 1357ffe67aa5SVáclav Hapla The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with PetscFree() when no longer needed. 1358ffe67aa5SVáclav Hapla 1359673100f5SVaclav Hapla .seealso: PetscSFComputeDegreeBegin(), PetscSFComputeDegreeEnd(), PetscSFGetMultiSF() 1360673100f5SVaclav Hapla @*/ 136166dfcd1aSVaclav Hapla PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1362673100f5SVaclav Hapla { 1363673100f5SVaclav Hapla PetscSF msf; 1364673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1365673100f5SVaclav Hapla PetscErrorCode ierr; 1366673100f5SVaclav Hapla 1367673100f5SVaclav Hapla PetscFunctionBegin; 1368673100f5SVaclav Hapla PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 1369673100f5SVaclav Hapla ierr = PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 137029328920SVaclav Hapla if (nroots) PetscValidIntPointer(degree,2); 137166dfcd1aSVaclav Hapla if (nMultiRoots) PetscValidIntPointer(nMultiRoots,3); 137266dfcd1aSVaclav Hapla PetscValidPointer(multiRootsOrigNumbering,4); 1373673100f5SVaclav Hapla ierr = PetscSFGetMultiSF(sf,&msf);CHKERRQ(ierr); 1374673100f5SVaclav Hapla ierr = PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL);CHKERRQ(ierr); 137566dfcd1aSVaclav Hapla ierr = PetscMalloc1(nmroots, multiRootsOrigNumbering);CHKERRQ(ierr); 1376673100f5SVaclav Hapla for (i=0,j=0,k=0; i<nroots; i++) { 1377673100f5SVaclav Hapla if (!degree[i]) continue; 1378673100f5SVaclav Hapla for (j=0; j<degree[i]; j++,k++) { 137966dfcd1aSVaclav Hapla (*multiRootsOrigNumbering)[k] = i; 1380673100f5SVaclav Hapla } 1381673100f5SVaclav Hapla } 1382673100f5SVaclav Hapla #if defined(PETSC_USE_DEBUG) 1383673100f5SVaclav Hapla if (PetscUnlikely(k != nmroots)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"sanity check fail"); 1384673100f5SVaclav Hapla #endif 138566dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 1386673100f5SVaclav Hapla PetscFunctionReturn(0); 1387673100f5SVaclav Hapla } 1388673100f5SVaclav Hapla 138995fce210SBarry Smith /*@C 139095fce210SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd() 139195fce210SBarry Smith 139295fce210SBarry Smith Collective 139395fce210SBarry Smith 139495fce210SBarry Smith Input Arguments: 139595fce210SBarry Smith + sf - star forest 139695fce210SBarry Smith . unit - data type 139795fce210SBarry Smith . leafdata - leaf values to use in reduction 139895fce210SBarry Smith - op - operation to use for reduction 139995fce210SBarry Smith 140095fce210SBarry Smith Output Arguments: 140195fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 140295fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 140395fce210SBarry Smith 140495fce210SBarry Smith Level: advanced 140595fce210SBarry Smith 140695fce210SBarry Smith Note: 140795fce210SBarry Smith The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 140895fce210SBarry Smith might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 140995fce210SBarry Smith not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 141095fce210SBarry Smith integers. 141195fce210SBarry Smith 141295fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph() 141395fce210SBarry Smith @*/ 141495fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 141595fce210SBarry Smith { 141695fce210SBarry Smith PetscErrorCode ierr; 141795fce210SBarry Smith 141895fce210SBarry Smith PetscFunctionBegin; 141995fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 142095fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 142129046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 142295fce210SBarry Smith ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1423563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 142495fce210SBarry Smith PetscFunctionReturn(0); 142595fce210SBarry Smith } 142695fce210SBarry Smith 142795fce210SBarry Smith /*@C 142895fce210SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value 142995fce210SBarry Smith 143095fce210SBarry Smith Collective 143195fce210SBarry Smith 143295fce210SBarry Smith Input Arguments: 143395fce210SBarry Smith + sf - star forest 143495fce210SBarry Smith . unit - data type 143595fce210SBarry Smith . leafdata - leaf values to use in reduction 143695fce210SBarry Smith - op - operation to use for reduction 143795fce210SBarry Smith 143895fce210SBarry Smith Output Arguments: 143995fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 144095fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 144195fce210SBarry Smith 144295fce210SBarry Smith Level: advanced 144395fce210SBarry Smith 144495fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph() 144595fce210SBarry Smith @*/ 144695fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 144795fce210SBarry Smith { 144895fce210SBarry Smith PetscErrorCode ierr; 144995fce210SBarry Smith 145095fce210SBarry Smith PetscFunctionBegin; 145195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 145295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 145329046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 145495fce210SBarry Smith ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1455563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 145695fce210SBarry Smith PetscFunctionReturn(0); 145795fce210SBarry Smith } 145895fce210SBarry Smith 145995fce210SBarry Smith /*@C 146095fce210SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd() 146195fce210SBarry Smith 146295fce210SBarry Smith Collective 146395fce210SBarry Smith 146495fce210SBarry Smith Input Arguments: 146595fce210SBarry Smith + sf - star forest 146695fce210SBarry Smith . unit - data type 146795fce210SBarry Smith - leafdata - leaf data to gather to roots 146895fce210SBarry Smith 146995fce210SBarry Smith Output Argument: 147095fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 147195fce210SBarry Smith 147295fce210SBarry Smith Level: intermediate 147395fce210SBarry Smith 147495fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 147595fce210SBarry Smith @*/ 147695fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 147795fce210SBarry Smith { 147895fce210SBarry Smith PetscErrorCode ierr; 147995fce210SBarry Smith PetscSF multi; 148095fce210SBarry Smith 148195fce210SBarry Smith PetscFunctionBegin; 148295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 148329046d53SLisandro Dalcin ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 148495fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 14858bfbc91cSJed Brown ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 148695fce210SBarry Smith PetscFunctionReturn(0); 148795fce210SBarry Smith } 148895fce210SBarry Smith 148995fce210SBarry Smith /*@C 149095fce210SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin() 149195fce210SBarry Smith 149295fce210SBarry Smith Collective 149395fce210SBarry Smith 149495fce210SBarry Smith Input Arguments: 149595fce210SBarry Smith + sf - star forest 149695fce210SBarry Smith . unit - data type 149795fce210SBarry Smith - leafdata - leaf data to gather to roots 149895fce210SBarry Smith 149995fce210SBarry Smith Output Argument: 150095fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 150195fce210SBarry Smith 150295fce210SBarry Smith Level: intermediate 150395fce210SBarry Smith 150495fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 150595fce210SBarry Smith @*/ 150695fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 150795fce210SBarry Smith { 150895fce210SBarry Smith PetscErrorCode ierr; 150995fce210SBarry Smith PetscSF multi; 151095fce210SBarry Smith 151195fce210SBarry Smith PetscFunctionBegin; 151295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 151395fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 151495fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 15158bfbc91cSJed Brown ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 151695fce210SBarry Smith PetscFunctionReturn(0); 151795fce210SBarry Smith } 151895fce210SBarry Smith 151995fce210SBarry Smith /*@C 152095fce210SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd() 152195fce210SBarry Smith 152295fce210SBarry Smith Collective 152395fce210SBarry Smith 152495fce210SBarry Smith Input Arguments: 152595fce210SBarry Smith + sf - star forest 152695fce210SBarry Smith . unit - data type 152795fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 152895fce210SBarry Smith 152995fce210SBarry Smith Output Argument: 153095fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 153195fce210SBarry Smith 153295fce210SBarry Smith Level: intermediate 153395fce210SBarry Smith 153495fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 153595fce210SBarry Smith @*/ 153695fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 153795fce210SBarry Smith { 153895fce210SBarry Smith PetscErrorCode ierr; 153995fce210SBarry Smith PetscSF multi; 154095fce210SBarry Smith 154195fce210SBarry Smith PetscFunctionBegin; 154295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 154395fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 154495fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 154595fce210SBarry Smith ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 154695fce210SBarry Smith PetscFunctionReturn(0); 154795fce210SBarry Smith } 154895fce210SBarry Smith 154995fce210SBarry Smith /*@C 155095fce210SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin() 155195fce210SBarry Smith 155295fce210SBarry Smith Collective 155395fce210SBarry Smith 155495fce210SBarry Smith Input Arguments: 155595fce210SBarry Smith + sf - star forest 155695fce210SBarry Smith . unit - data type 155795fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 155895fce210SBarry Smith 155995fce210SBarry Smith Output Argument: 156095fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 156195fce210SBarry Smith 156295fce210SBarry Smith Level: intermediate 156395fce210SBarry Smith 156495fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 156595fce210SBarry Smith @*/ 156695fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 156795fce210SBarry Smith { 156895fce210SBarry Smith PetscErrorCode ierr; 156995fce210SBarry Smith PetscSF multi; 157095fce210SBarry Smith 157195fce210SBarry Smith PetscFunctionBegin; 157295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 157395fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 157495fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 157595fce210SBarry Smith ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 157695fce210SBarry Smith PetscFunctionReturn(0); 157795fce210SBarry Smith } 1578a7b3aa13SAta Mesgarnejad 1579a7b3aa13SAta Mesgarnejad /*@ 1580a7b3aa13SAta Mesgarnejad PetscSFCompose - Compose a new PetscSF equivalent to action to PetscSFs 1581a7b3aa13SAta Mesgarnejad 1582a7b3aa13SAta Mesgarnejad Input Parameters: 1583a7b3aa13SAta Mesgarnejad + sfA - The first PetscSF 1584a7b3aa13SAta Mesgarnejad - sfB - The second PetscSF 1585a7b3aa13SAta Mesgarnejad 1586a7b3aa13SAta Mesgarnejad Output Parameters: 1587a7b3aa13SAta Mesgarnejad . sfBA - equvalent PetscSF for applying A then B 1588a7b3aa13SAta Mesgarnejad 1589a7b3aa13SAta Mesgarnejad Level: developer 1590a7b3aa13SAta Mesgarnejad 1591a7b3aa13SAta Mesgarnejad .seealso: PetscSF, PetscSFGetGraph(), PetscSFSetGraph() 1592a7b3aa13SAta Mesgarnejad @*/ 1593a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1594a7b3aa13SAta Mesgarnejad { 1595a7b3aa13SAta Mesgarnejad MPI_Comm comm; 1596a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1597a7b3aa13SAta Mesgarnejad PetscSFNode *remotePointsBA; 1598a7b3aa13SAta Mesgarnejad const PetscInt *localPointsA, *localPointsB; 1599a7b3aa13SAta Mesgarnejad PetscInt numRootsA, numLeavesA, numRootsB, numLeavesB; 1600a7b3aa13SAta Mesgarnejad PetscErrorCode ierr; 1601a7b3aa13SAta Mesgarnejad 1602a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1603a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 160429046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 160529046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 160629046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 160729046d53SLisandro Dalcin PetscValidPointer(sfBA, 3); 1608a7b3aa13SAta Mesgarnejad ierr = PetscObjectGetComm((PetscObject) sfA, &comm);CHKERRQ(ierr); 1609a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr); 1610a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr); 1611a7b3aa13SAta Mesgarnejad ierr = PetscMalloc1(numLeavesB, &remotePointsBA);CHKERRQ(ierr); 1612a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1613a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1614a7b3aa13SAta Mesgarnejad ierr = PetscSFCreate(comm, sfBA);CHKERRQ(ierr); 1615a7b3aa13SAta Mesgarnejad ierr = PetscSFSetGraph(*sfBA, numRootsA, numLeavesB, localPointsB, PETSC_COPY_VALUES, remotePointsBA, PETSC_OWN_POINTER);CHKERRQ(ierr); 1616a7b3aa13SAta Mesgarnejad PetscFunctionReturn(0); 1617a7b3aa13SAta Mesgarnejad } 1618