1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h> 353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h> 4eec179cfSJacob Faibussowitsch #include <petsc/private/hashmapi.h> 595fce210SBarry Smith 67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 77fd2d3dbSJunchao Zhang #include <cuda_runtime.h> 8715b587bSJunchao Zhang #include <petscdevice_cuda.h> 97fd2d3dbSJunchao Zhang #endif 107fd2d3dbSJunchao Zhang 117fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP) 127fd2d3dbSJunchao Zhang #include <hip/hip_runtime.h> 137fd2d3dbSJunchao Zhang #endif 147fd2d3dbSJunchao Zhang 152abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER) 164bf303faSJacob Faibussowitsch extern void PetscSFCheckGraphSet(PetscSF, int); 172abc8c78SJacob Faibussowitsch #else 1895fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 19a8f51744SPierre Jolivet #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME) 2095fce210SBarry Smith #else 219371c9d4SSatish Balay #define PetscSFCheckGraphSet(sf, arg) \ 229371c9d4SSatish Balay do { \ 239371c9d4SSatish Balay } while (0) 2495fce210SBarry Smith #endif 252abc8c78SJacob Faibussowitsch #endif 2695fce210SBarry Smith 274c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[] = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL}; 281f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL}; 2995fce210SBarry Smith 308af6ec1cSBarry Smith /*@ 3195fce210SBarry Smith PetscSFCreate - create a star forest communication context 3295fce210SBarry Smith 33d083f849SBarry Smith Collective 3495fce210SBarry Smith 354165533cSJose E. Roman Input Parameter: 3695fce210SBarry Smith . comm - communicator on which the star forest will operate 3795fce210SBarry Smith 384165533cSJose E. Roman Output Parameter: 3995fce210SBarry Smith . sf - new star forest context 4095fce210SBarry Smith 4120662ed9SBarry Smith Options Database Key: 426677b1c1SJunchao Zhang + -sf_type basic - Use MPI persistent Isend/Irecv for communication (Default) 436677b1c1SJunchao Zhang . -sf_type window - Use MPI-3 one-sided window for communication 446677b1c1SJunchao Zhang . -sf_type neighbor - Use MPI-3 neighborhood collectives for communication 456677b1c1SJunchao Zhang - -sf_neighbor_persistent <bool> - If true, use MPI-4 persistent neighborhood collectives for communication (used along with -sf_type neighbor) 46dd5b3ca6SJunchao Zhang 4795fce210SBarry Smith Level: intermediate 4895fce210SBarry Smith 49cab54364SBarry Smith Note: 50cab54364SBarry Smith When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`, 51cab54364SBarry Smith `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special 5220662ed9SBarry Smith `SF`s are optimized and they have better performance than the general `SF`s. 53dd5b3ca6SJunchao Zhang 5438b5cf2dSJacob Faibussowitsch .seealso: `PetscSF`, `PetscSFSetType`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()` 5595fce210SBarry Smith @*/ 56d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf) 57d71ae5a4SJacob Faibussowitsch { 5895fce210SBarry Smith PetscSF b; 5995fce210SBarry Smith 6095fce210SBarry Smith PetscFunctionBegin; 614f572ea9SToby Isaac PetscAssertPointer(sf, 2); 629566063dSJacob Faibussowitsch PetscCall(PetscSFInitializePackage()); 6395fce210SBarry Smith 649566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView)); 6595fce210SBarry Smith 6695fce210SBarry Smith b->nroots = -1; 6795fce210SBarry Smith b->nleaves = -1; 6829046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 6929046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 7095fce210SBarry Smith b->nranks = -1; 7195fce210SBarry Smith b->rankorder = PETSC_TRUE; 7295fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 7395fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 7495fce210SBarry Smith b->graphset = PETSC_FALSE; 7520c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 7620c24465SJunchao Zhang b->use_gpu_aware_mpi = use_gpu_aware_mpi; 7720c24465SJunchao Zhang b->use_stream_aware_mpi = PETSC_FALSE; 7871438e86SJunchao Zhang b->unknown_input_stream = PETSC_FALSE; 7927f636e8SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/ 8020c24465SJunchao Zhang b->backend = PETSCSF_BACKEND_KOKKOS; 8127f636e8SJunchao Zhang #elif defined(PETSC_HAVE_CUDA) 8227f636e8SJunchao Zhang b->backend = PETSCSF_BACKEND_CUDA; 8359af0bd3SScott Kruger #elif defined(PETSC_HAVE_HIP) 8459af0bd3SScott Kruger b->backend = PETSCSF_BACKEND_HIP; 8520c24465SJunchao Zhang #endif 8671438e86SJunchao Zhang 8771438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 8871438e86SJunchao Zhang b->use_nvshmem = PETSC_FALSE; /* Default is not to try NVSHMEM */ 8971438e86SJunchao Zhang b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */ 909566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL)); 919566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL)); 9271438e86SJunchao Zhang #endif 9320c24465SJunchao Zhang #endif 9460c22052SBarry Smith b->vscat.from_n = -1; 9560c22052SBarry Smith b->vscat.to_n = -1; 9660c22052SBarry Smith b->vscat.unit = MPIU_SCALAR; 9795fce210SBarry Smith *sf = b; 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9995fce210SBarry Smith } 10095fce210SBarry Smith 10129046d53SLisandro Dalcin /*@ 10295fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 10395fce210SBarry Smith 10495fce210SBarry Smith Collective 10595fce210SBarry Smith 1064165533cSJose E. Roman Input Parameter: 10795fce210SBarry Smith . sf - star forest 10895fce210SBarry Smith 10995fce210SBarry Smith Level: advanced 11095fce210SBarry Smith 111cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()` 11295fce210SBarry Smith @*/ 113d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf) 114d71ae5a4SJacob Faibussowitsch { 11595fce210SBarry Smith PetscFunctionBegin; 11695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 117dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Reset); 11829046d53SLisandro Dalcin sf->nroots = -1; 11929046d53SLisandro Dalcin sf->nleaves = -1; 12029046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 12129046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 12295fce210SBarry Smith sf->mine = NULL; 12395fce210SBarry Smith sf->remote = NULL; 12429046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 1259566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->mine_alloc)); 1269566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->remote_alloc)); 12721c688dcSJed Brown sf->nranks = -1; 1289566063dSJacob Faibussowitsch PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote)); 12929046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 1309566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degree)); 1319566063dSJacob Faibussowitsch if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup)); 1329566063dSJacob Faibussowitsch if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup)); 133013b3241SStefano Zampini if (sf->multi) sf->multi->multi = NULL; 1349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf->multi)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&sf->map)); 13671438e86SJunchao Zhang 13771438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 1389566063dSJacob Faibussowitsch for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i])); 13971438e86SJunchao Zhang #endif 14071438e86SJunchao Zhang 14195fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 1423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14395fce210SBarry Smith } 14495fce210SBarry Smith 14595fce210SBarry Smith /*@C 146cab54364SBarry Smith PetscSFSetType - Set the `PetscSF` communication implementation 14795fce210SBarry Smith 148c3339decSBarry Smith Collective 14995fce210SBarry Smith 15095fce210SBarry Smith Input Parameters: 151cab54364SBarry Smith + sf - the `PetscSF` context 15295fce210SBarry Smith - type - a known method 153cab54364SBarry Smith .vb 154cab54364SBarry Smith PETSCSFWINDOW - MPI-2/3 one-sided 155cab54364SBarry Smith PETSCSFBASIC - basic implementation using MPI-1 two-sided 156cab54364SBarry Smith .ve 15795fce210SBarry Smith 15895fce210SBarry Smith Options Database Key: 15920662ed9SBarry Smith . -sf_type <type> - Sets the method; for example `basic` or `window` use -help for a list of available methods 160cab54364SBarry Smith 161cab54364SBarry Smith Level: intermediate 16295fce210SBarry Smith 16395fce210SBarry Smith Notes: 16420662ed9SBarry Smith See `PetscSFType` for possible values 16595fce210SBarry Smith 16620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()` 16795fce210SBarry Smith @*/ 168d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type) 169d71ae5a4SJacob Faibussowitsch { 17095fce210SBarry Smith PetscBool match; 1715f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(PetscSF); 17295fce210SBarry Smith 17395fce210SBarry Smith PetscFunctionBegin; 17495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 1754f572ea9SToby Isaac PetscAssertPointer(type, 2); 17695fce210SBarry Smith 1779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match)); 1783ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 17995fce210SBarry Smith 1809566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSFList, type, &r)); 1816adde796SStefano Zampini PetscCheck(r, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type); 18229046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 183dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Destroy); 1849566063dSJacob Faibussowitsch PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops))); 1859566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type)); 1869566063dSJacob Faibussowitsch PetscCall((*r)(sf)); 1873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18895fce210SBarry Smith } 18995fce210SBarry Smith 19029046d53SLisandro Dalcin /*@C 191cab54364SBarry Smith PetscSFGetType - Get the `PetscSF` communication implementation 19229046d53SLisandro Dalcin 19329046d53SLisandro Dalcin Not Collective 19429046d53SLisandro Dalcin 19529046d53SLisandro Dalcin Input Parameter: 196cab54364SBarry Smith . sf - the `PetscSF` context 19729046d53SLisandro Dalcin 19829046d53SLisandro Dalcin Output Parameter: 199cab54364SBarry Smith . type - the `PetscSF` type name 20029046d53SLisandro Dalcin 20129046d53SLisandro Dalcin Level: intermediate 20229046d53SLisandro Dalcin 20320662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()` 20429046d53SLisandro Dalcin @*/ 205d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 206d71ae5a4SJacob Faibussowitsch { 20729046d53SLisandro Dalcin PetscFunctionBegin; 20829046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2094f572ea9SToby Isaac PetscAssertPointer(type, 2); 21029046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 2113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21229046d53SLisandro Dalcin } 21329046d53SLisandro Dalcin 2141fb7b255SJunchao Zhang /*@C 21520662ed9SBarry Smith PetscSFDestroy - destroy a star forest 21695fce210SBarry Smith 21795fce210SBarry Smith Collective 21895fce210SBarry Smith 2194165533cSJose E. Roman Input Parameter: 22095fce210SBarry Smith . sf - address of star forest 22195fce210SBarry Smith 22295fce210SBarry Smith Level: intermediate 22395fce210SBarry Smith 22420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()` 22595fce210SBarry Smith @*/ 226d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf) 227d71ae5a4SJacob Faibussowitsch { 22895fce210SBarry Smith PetscFunctionBegin; 2293ba16761SJacob Faibussowitsch if (!*sf) PetscFunctionReturn(PETSC_SUCCESS); 230*f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*sf, PETSCSF_CLASSID, 1); 231*f4f49eeaSPierre Jolivet if (--((PetscObject)*sf)->refct > 0) { 2329371c9d4SSatish Balay *sf = NULL; 2333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2349371c9d4SSatish Balay } 2359566063dSJacob Faibussowitsch PetscCall(PetscSFReset(*sf)); 236*f4f49eeaSPierre Jolivet PetscTryTypeMethod(*sf, Destroy); 2379566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf)); 2389566063dSJacob Faibussowitsch if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit)); 239c02794c0SJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 240715b587bSJunchao Zhang if ((*sf)->use_stream_aware_mpi) { 241715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_free(&(*sf)->mpi_stream)); 242715b587bSJunchao Zhang PetscCallMPI(MPI_Comm_free(&(*sf)->stream_comm)); 243715b587bSJunchao Zhang } 244715b587bSJunchao Zhang #endif 2459566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sf)); 2463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24795fce210SBarry Smith } 24895fce210SBarry Smith 249d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf) 250d71ae5a4SJacob Faibussowitsch { 251c4e6a40aSLawrence Mitchell PetscInt i, nleaves; 252c4e6a40aSLawrence Mitchell PetscMPIInt size; 253c4e6a40aSLawrence Mitchell const PetscInt *ilocal; 254c4e6a40aSLawrence Mitchell const PetscSFNode *iremote; 255c4e6a40aSLawrence Mitchell 256c4e6a40aSLawrence Mitchell PetscFunctionBegin; 2573ba16761SJacob Faibussowitsch if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(PETSC_SUCCESS); 2589566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote)); 2599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 260c4e6a40aSLawrence Mitchell for (i = 0; i < nleaves; i++) { 261c4e6a40aSLawrence Mitchell const PetscInt rank = iremote[i].rank; 262c4e6a40aSLawrence Mitchell const PetscInt remote = iremote[i].index; 263c4e6a40aSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 264c9cc58a2SBarry Smith PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size); 26508401ef6SPierre Jolivet PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i); 26608401ef6SPierre Jolivet PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i); 267c4e6a40aSLawrence Mitchell } 2683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 269c4e6a40aSLawrence Mitchell } 270c4e6a40aSLawrence Mitchell 27195fce210SBarry Smith /*@ 27220662ed9SBarry Smith PetscSFSetUp - set up communication structures for a `PetscSF`, after this is done it may be used to perform communication 27395fce210SBarry Smith 27495fce210SBarry Smith Collective 27595fce210SBarry Smith 2764165533cSJose E. Roman Input Parameter: 27795fce210SBarry Smith . sf - star forest communication object 27895fce210SBarry Smith 27995fce210SBarry Smith Level: beginner 28095fce210SBarry Smith 28120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()` 28295fce210SBarry Smith @*/ 283d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf) 284d71ae5a4SJacob Faibussowitsch { 28595fce210SBarry Smith PetscFunctionBegin; 28629046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 28729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 2883ba16761SJacob Faibussowitsch if (sf->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 2899566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0)); 2909566063dSJacob Faibussowitsch PetscCall(PetscSFCheckGraphValid_Private(sf)); 2919566063dSJacob Faibussowitsch if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */ 292dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetUp); 29320c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 29420c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_CUDA) { 29571438e86SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_CUDA; 29671438e86SJunchao Zhang sf->ops->Free = PetscSFFree_CUDA; 29720c24465SJunchao Zhang } 29820c24465SJunchao Zhang #endif 29959af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 30059af0bd3SScott Kruger if (sf->backend == PETSCSF_BACKEND_HIP) { 30159af0bd3SScott Kruger sf->ops->Malloc = PetscSFMalloc_HIP; 30259af0bd3SScott Kruger sf->ops->Free = PetscSFFree_HIP; 30359af0bd3SScott Kruger } 30459af0bd3SScott Kruger #endif 30520c24465SJunchao Zhang 30620c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 30720c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_KOKKOS) { 30820c24465SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_Kokkos; 30920c24465SJunchao Zhang sf->ops->Free = PetscSFFree_Kokkos; 31020c24465SJunchao Zhang } 31120c24465SJunchao Zhang #endif 3129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0)); 31395fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 3143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31595fce210SBarry Smith } 31695fce210SBarry Smith 3178af6ec1cSBarry Smith /*@ 318cab54364SBarry Smith PetscSFSetFromOptions - set `PetscSF` options using the options database 31995fce210SBarry Smith 32095fce210SBarry Smith Logically Collective 32195fce210SBarry Smith 3224165533cSJose E. Roman Input Parameter: 32395fce210SBarry Smith . sf - star forest 32495fce210SBarry Smith 32595fce210SBarry Smith Options Database Keys: 32620662ed9SBarry Smith + -sf_type - implementation type, see `PetscSFSetType()` 32751ccb202SJunchao Zhang . -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 32820662ed9SBarry Smith . -sf_use_default_stream - Assume callers of `PetscSF` computed the input root/leafdata with the default CUDA stream. `PetscSF` will also 32920662ed9SBarry Smith use the default stream to process data. Therefore, no stream synchronization is needed between `PetscSF` and its caller (default: true). 33020662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33120662ed9SBarry Smith . -sf_use_stream_aware_mpi - Assume the underlying MPI is CUDA-stream aware and `PetscSF` won't sync streams for send/recv buffers passed to MPI (default: false). 33220662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33395fce210SBarry Smith 33438b5cf2dSJacob Faibussowitsch - -sf_backend cuda | hip | kokkos -Select the device backend SF uses. Currently `PetscSF` has these backends: cuda - hip and Kokkos. 33559af0bd3SScott Kruger On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices, 33620c24465SJunchao Zhang the only available is kokkos. 33720c24465SJunchao Zhang 33895fce210SBarry Smith Level: intermediate 339cab54364SBarry Smith 340cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()` 34195fce210SBarry Smith @*/ 342d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 343d71ae5a4SJacob Faibussowitsch { 34495fce210SBarry Smith PetscSFType deft; 34595fce210SBarry Smith char type[256]; 34695fce210SBarry Smith PetscBool flg; 34795fce210SBarry Smith 34895fce210SBarry Smith PetscFunctionBegin; 34995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 350d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)sf); 35195fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 3529566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg)); 3539566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, flg ? type : deft)); 3549566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL)); 3557fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 35620c24465SJunchao Zhang { 35720c24465SJunchao Zhang char backendstr[32] = {0}; 35859af0bd3SScott Kruger PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set; 35920c24465SJunchao Zhang /* Change the defaults set in PetscSFCreate() with command line options */ 360d5b43468SJose E. Roman PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL)); 3619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL)); 3629566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set)); 3639566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda)); 3649566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos)); 3659566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("hip", backendstr, &isHip)); 36659af0bd3SScott Kruger #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 36720c24465SJunchao Zhang if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA; 36820c24465SJunchao Zhang else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS; 36959af0bd3SScott Kruger else if (isHip) sf->backend = PETSCSF_BACKEND_HIP; 37028b400f6SJacob Faibussowitsch else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr); 37120c24465SJunchao Zhang #elif defined(PETSC_HAVE_KOKKOS) 37208401ef6SPierre Jolivet PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr); 37320c24465SJunchao Zhang #endif 374715b587bSJunchao Zhang 375715b587bSJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 376715b587bSJunchao Zhang if (sf->use_stream_aware_mpi) { 377715b587bSJunchao Zhang MPI_Info info; 378715b587bSJunchao Zhang 379715b587bSJunchao Zhang PetscCallMPI(MPI_Info_create(&info)); 380715b587bSJunchao Zhang PetscCallMPI(MPI_Info_set(info, "type", "cudaStream_t")); 381715b587bSJunchao Zhang PetscCallMPI(MPIX_Info_set_hex(info, "value", &PetscDefaultCudaStream, sizeof(PetscDefaultCudaStream))); 382715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_create(info, &sf->mpi_stream)); 383715b587bSJunchao Zhang PetscCallMPI(MPI_Info_free(&info)); 384715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_comm_create(PetscObjectComm((PetscObject)sf), sf->mpi_stream, &sf->stream_comm)); 385715b587bSJunchao Zhang } 386715b587bSJunchao Zhang #endif 38720c24465SJunchao Zhang } 388c2a741eeSJunchao Zhang #endif 389dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject); 390d0609cedSBarry Smith PetscOptionsEnd(); 3913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39295fce210SBarry Smith } 39395fce210SBarry Smith 39429046d53SLisandro Dalcin /*@ 39595fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 39695fce210SBarry Smith 39795fce210SBarry Smith Logically Collective 39895fce210SBarry Smith 3994165533cSJose E. Roman Input Parameters: 40095fce210SBarry Smith + sf - star forest 401cab54364SBarry Smith - flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic) 40295fce210SBarry Smith 40395fce210SBarry Smith Level: advanced 40495fce210SBarry Smith 40520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()` 40695fce210SBarry Smith @*/ 407d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg) 408d71ae5a4SJacob Faibussowitsch { 40995fce210SBarry Smith PetscFunctionBegin; 41095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 41195fce210SBarry Smith PetscValidLogicalCollectiveBool(sf, flg, 2); 41228b400f6SJacob Faibussowitsch PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 41395fce210SBarry Smith sf->rankorder = flg; 4143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41595fce210SBarry Smith } 41695fce210SBarry Smith 4178dbb0df6SBarry Smith /*@C 41895fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 41995fce210SBarry Smith 42095fce210SBarry Smith Collective 42195fce210SBarry Smith 4224165533cSJose E. Roman Input Parameters: 42395fce210SBarry Smith + sf - star forest 42495fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 42595fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 42620662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass `NULL` for contiguous storage (locations must be >= 0, enforced 427c4e6a40aSLawrence Mitchell during setup in debug mode) 42820662ed9SBarry Smith . localmode - copy mode for `ilocal` 429c4e6a40aSLawrence Mitchell . iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced 430c4e6a40aSLawrence Mitchell during setup in debug mode) 43120662ed9SBarry Smith - remotemode - copy mode for `iremote` 43295fce210SBarry Smith 43395fce210SBarry Smith Level: intermediate 43495fce210SBarry Smith 43595452b02SPatrick Sanan Notes: 43620662ed9SBarry Smith Leaf indices in `ilocal` must be unique, otherwise an error occurs. 43738ab3f8aSBarry Smith 43820662ed9SBarry Smith Input arrays `ilocal` and `iremote` follow the `PetscCopyMode` semantics. 43920662ed9SBarry Smith In particular, if `localmode` or `remotemode` is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`, 440db2b9530SVaclav Hapla PETSc might modify the respective array; 44120662ed9SBarry Smith if `PETSC_USE_POINTER`, the user must delete the array after `PetscSFDestroy()`. 442cab54364SBarry Smith Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed). 443db2b9530SVaclav Hapla 44438b5cf2dSJacob Faibussowitsch Fortran Notes: 44520662ed9SBarry Smith In Fortran you must use `PETSC_COPY_VALUES` for `localmode` and `remotemode`. 446c4e6a40aSLawrence Mitchell 44738b5cf2dSJacob Faibussowitsch Developer Notes: 448db2b9530SVaclav Hapla We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf. 44920662ed9SBarry Smith This also allows to compare leaf sets of two `PetscSF`s easily. 45072bf8598SVaclav Hapla 45120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 45295fce210SBarry Smith @*/ 453d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode) 454d71ae5a4SJacob Faibussowitsch { 455db2b9530SVaclav Hapla PetscBool unique, contiguous; 45695fce210SBarry Smith 45795fce210SBarry Smith PetscFunctionBegin; 45895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 4594f572ea9SToby Isaac if (nleaves > 0 && ilocal) PetscAssertPointer(ilocal, 4); 4604f572ea9SToby Isaac if (nleaves > 0) PetscAssertPointer(iremote, 6); 46108401ef6SPierre Jolivet PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots); 46208401ef6SPierre Jolivet PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves); 4638da24d32SBarry Smith /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast 4648da24d32SBarry Smith * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */ 4658da24d32SBarry Smith PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode); 4668da24d32SBarry Smith PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode); 46729046d53SLisandro Dalcin 4682a67d2daSStefano Zampini if (sf->nroots >= 0) { /* Reset only if graph already set */ 4699566063dSJacob Faibussowitsch PetscCall(PetscSFReset(sf)); 4702a67d2daSStefano Zampini } 4712a67d2daSStefano Zampini 4729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0)); 47329046d53SLisandro Dalcin 47495fce210SBarry Smith sf->nroots = nroots; 47595fce210SBarry Smith sf->nleaves = nleaves; 47629046d53SLisandro Dalcin 477db2b9530SVaclav Hapla if (localmode == PETSC_COPY_VALUES && ilocal) { 478db2b9530SVaclav Hapla PetscInt *tlocal = NULL; 479db2b9530SVaclav Hapla 4809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tlocal)); 4819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tlocal, ilocal, nleaves)); 482db2b9530SVaclav Hapla ilocal = tlocal; 483db2b9530SVaclav Hapla } 484db2b9530SVaclav Hapla if (remotemode == PETSC_COPY_VALUES) { 485db2b9530SVaclav Hapla PetscSFNode *tremote = NULL; 486db2b9530SVaclav Hapla 4879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tremote)); 4889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tremote, iremote, nleaves)); 489db2b9530SVaclav Hapla iremote = tremote; 490db2b9530SVaclav Hapla } 491db2b9530SVaclav Hapla 49229046d53SLisandro Dalcin if (nleaves && ilocal) { 493db2b9530SVaclav Hapla PetscSFNode work; 494db2b9530SVaclav Hapla 4959566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work)); 4969566063dSJacob Faibussowitsch PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique)); 497db2b9530SVaclav Hapla unique = PetscNot(unique); 498db2b9530SVaclav Hapla PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF"); 499db2b9530SVaclav Hapla sf->minleaf = ilocal[0]; 500db2b9530SVaclav Hapla sf->maxleaf = ilocal[nleaves - 1]; 501db2b9530SVaclav Hapla contiguous = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1); 50229046d53SLisandro Dalcin } else { 50329046d53SLisandro Dalcin sf->minleaf = 0; 50429046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 505db2b9530SVaclav Hapla unique = PETSC_TRUE; 506db2b9530SVaclav Hapla contiguous = PETSC_TRUE; 50729046d53SLisandro Dalcin } 50829046d53SLisandro Dalcin 509db2b9530SVaclav Hapla if (contiguous) { 510db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 511db2b9530SVaclav Hapla ilocal = NULL; 512db2b9530SVaclav Hapla } else { 5139566063dSJacob Faibussowitsch PetscCall(PetscFree(ilocal)); 514db2b9530SVaclav Hapla } 515db2b9530SVaclav Hapla } 516db2b9530SVaclav Hapla sf->mine = ilocal; 517db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 51829046d53SLisandro Dalcin sf->mine_alloc = NULL; 519db2b9530SVaclav Hapla } else { 520db2b9530SVaclav Hapla sf->mine_alloc = ilocal; 52195fce210SBarry Smith } 522db2b9530SVaclav Hapla sf->remote = iremote; 523db2b9530SVaclav Hapla if (remotemode == PETSC_USE_POINTER) { 52429046d53SLisandro Dalcin sf->remote_alloc = NULL; 525db2b9530SVaclav Hapla } else { 526db2b9530SVaclav Hapla sf->remote_alloc = iremote; 52795fce210SBarry Smith } 5289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0)); 52929046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 5303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53195fce210SBarry Smith } 53295fce210SBarry Smith 53329046d53SLisandro Dalcin /*@ 534cab54364SBarry Smith PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern 535dd5b3ca6SJunchao Zhang 536dd5b3ca6SJunchao Zhang Collective 537dd5b3ca6SJunchao Zhang 538dd5b3ca6SJunchao Zhang Input Parameters: 539cab54364SBarry Smith + sf - The `PetscSF` 540cab54364SBarry Smith . map - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`) 541cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL` 542cab54364SBarry Smith 543cab54364SBarry Smith Level: intermediate 544dd5b3ca6SJunchao Zhang 545dd5b3ca6SJunchao Zhang Notes: 54620662ed9SBarry Smith It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector `x` and its `PetscLayout` is `map`. 54720662ed9SBarry Smith `n` and `N` are the local and global sizes of `x` respectively. 548dd5b3ca6SJunchao Zhang 54920662ed9SBarry Smith With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to 55020662ed9SBarry Smith sequential vectors `y` on all MPI processes. 551dd5b3ca6SJunchao Zhang 55220662ed9SBarry Smith With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to a 55320662ed9SBarry Smith sequential vector `y` on rank 0. 554dd5b3ca6SJunchao Zhang 55520662ed9SBarry Smith In above cases, entries of `x` are roots and entries of `y` are leaves. 556dd5b3ca6SJunchao Zhang 55720662ed9SBarry Smith With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of `sf`'s communicator. The routine 558dd5b3ca6SJunchao Zhang creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i 559cab54364SBarry Smith of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does 560dd5b3ca6SJunchao Zhang not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data 561cab54364SBarry Smith items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines. 562dd5b3ca6SJunchao Zhang 563dd5b3ca6SJunchao Zhang In this case, roots and leaves are symmetric. 564dd5b3ca6SJunchao Zhang 565cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 566dd5b3ca6SJunchao Zhang @*/ 567d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern) 568d71ae5a4SJacob Faibussowitsch { 569dd5b3ca6SJunchao Zhang MPI_Comm comm; 570dd5b3ca6SJunchao Zhang PetscInt n, N, res[2]; 571dd5b3ca6SJunchao Zhang PetscMPIInt rank, size; 572dd5b3ca6SJunchao Zhang PetscSFType type; 573dd5b3ca6SJunchao Zhang 574dd5b3ca6SJunchao Zhang PetscFunctionBegin; 5752abc8c78SJacob Faibussowitsch PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 5764f572ea9SToby Isaac if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscAssertPointer(map, 2); 5779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 5782c71b3e2SJacob Faibussowitsch PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern); 5799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 581dd5b3ca6SJunchao Zhang 582dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLTOALL) { 583dd5b3ca6SJunchao Zhang type = PETSCSFALLTOALL; 5849566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &sf->map)); 5859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(sf->map, size)); 5869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size)); 5879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(sf->map)); 588dd5b3ca6SJunchao Zhang } else { 5899566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetLocalSize(map, &n)); 5909566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(map, &N)); 591dd5b3ca6SJunchao Zhang res[0] = n; 592dd5b3ca6SJunchao Zhang res[1] = -n; 593dd5b3ca6SJunchao Zhang /* Check if n are same over all ranks so that we can optimize it */ 5941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm)); 595dd5b3ca6SJunchao Zhang if (res[0] == -res[1]) { /* same n */ 596dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER; 597dd5b3ca6SJunchao Zhang } else { 598dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV; 599dd5b3ca6SJunchao Zhang } 6009566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(map, &sf->map)); 601dd5b3ca6SJunchao Zhang } 6029566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, type)); 603dd5b3ca6SJunchao Zhang 604dd5b3ca6SJunchao Zhang sf->pattern = pattern; 605dd5b3ca6SJunchao Zhang sf->mine = NULL; /* Contiguous */ 606dd5b3ca6SJunchao Zhang 607dd5b3ca6SJunchao Zhang /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called. 608dd5b3ca6SJunchao Zhang Also set other easy stuff. 609dd5b3ca6SJunchao Zhang */ 610dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLGATHER) { 611dd5b3ca6SJunchao Zhang sf->nleaves = N; 612dd5b3ca6SJunchao Zhang sf->nroots = n; 613dd5b3ca6SJunchao Zhang sf->nranks = size; 614dd5b3ca6SJunchao Zhang sf->minleaf = 0; 615dd5b3ca6SJunchao Zhang sf->maxleaf = N - 1; 616dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_GATHER) { 617dd5b3ca6SJunchao Zhang sf->nleaves = rank ? 0 : N; 618dd5b3ca6SJunchao Zhang sf->nroots = n; 619dd5b3ca6SJunchao Zhang sf->nranks = rank ? 0 : size; 620dd5b3ca6SJunchao Zhang sf->minleaf = 0; 621dd5b3ca6SJunchao Zhang sf->maxleaf = rank ? -1 : N - 1; 622dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_ALLTOALL) { 623dd5b3ca6SJunchao Zhang sf->nleaves = size; 624dd5b3ca6SJunchao Zhang sf->nroots = size; 625dd5b3ca6SJunchao Zhang sf->nranks = size; 626dd5b3ca6SJunchao Zhang sf->minleaf = 0; 627dd5b3ca6SJunchao Zhang sf->maxleaf = size - 1; 628dd5b3ca6SJunchao Zhang } 629dd5b3ca6SJunchao Zhang sf->ndranks = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */ 630dd5b3ca6SJunchao Zhang sf->graphset = PETSC_TRUE; 6313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 632dd5b3ca6SJunchao Zhang } 633dd5b3ca6SJunchao Zhang 634dd5b3ca6SJunchao Zhang /*@ 635cab54364SBarry Smith PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map 63695fce210SBarry Smith 63795fce210SBarry Smith Collective 63895fce210SBarry Smith 6394165533cSJose E. Roman Input Parameter: 64095fce210SBarry Smith . sf - star forest to invert 64195fce210SBarry Smith 6424165533cSJose E. Roman Output Parameter: 64320662ed9SBarry Smith . isf - inverse of `sf` 6444165533cSJose E. Roman 64595fce210SBarry Smith Level: advanced 64695fce210SBarry Smith 64795fce210SBarry Smith Notes: 64895fce210SBarry Smith All roots must have degree 1. 64995fce210SBarry Smith 65095fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 65195fce210SBarry Smith 65220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetGraph()` 65395fce210SBarry Smith @*/ 654d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf) 655d71ae5a4SJacob Faibussowitsch { 65695fce210SBarry Smith PetscMPIInt rank; 65795fce210SBarry Smith PetscInt i, nroots, nleaves, maxlocal, count, *newilocal; 65895fce210SBarry Smith const PetscInt *ilocal; 65995fce210SBarry Smith PetscSFNode *roots, *leaves; 66095fce210SBarry Smith 66195fce210SBarry Smith PetscFunctionBegin; 66229046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 66329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 6644f572ea9SToby Isaac PetscAssertPointer(isf, 2); 66529046d53SLisandro Dalcin 6669566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL)); 66729046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 66829046d53SLisandro Dalcin 6699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 6709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves)); 671ae9aee6dSMatthew G. Knepley for (i = 0; i < maxlocal; i++) { 67295fce210SBarry Smith leaves[i].rank = rank; 67395fce210SBarry Smith leaves[i].index = i; 67495fce210SBarry Smith } 67595fce210SBarry Smith for (i = 0; i < nroots; i++) { 67695fce210SBarry Smith roots[i].rank = -1; 67795fce210SBarry Smith roots[i].index = -1; 67895fce210SBarry Smith } 6799566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 6809566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 68195fce210SBarry Smith 68295fce210SBarry Smith /* Check whether our leaves are sparse */ 6839371c9d4SSatish Balay for (i = 0, count = 0; i < nroots; i++) 6849371c9d4SSatish Balay if (roots[i].rank >= 0) count++; 68595fce210SBarry Smith if (count == nroots) newilocal = NULL; 6869371c9d4SSatish Balay else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal)); 68795fce210SBarry Smith for (i = 0, count = 0; i < nroots; i++) { 68895fce210SBarry Smith if (roots[i].rank >= 0) { 68995fce210SBarry Smith newilocal[count] = i; 69095fce210SBarry Smith roots[count].rank = roots[i].rank; 69195fce210SBarry Smith roots[count].index = roots[i].index; 69295fce210SBarry Smith count++; 69395fce210SBarry Smith } 69495fce210SBarry Smith } 69595fce210SBarry Smith } 69695fce210SBarry Smith 6979566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf)); 6989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES)); 6999566063dSJacob Faibussowitsch PetscCall(PetscFree2(roots, leaves)); 7003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70195fce210SBarry Smith } 70295fce210SBarry Smith 70395fce210SBarry Smith /*@ 704cab54364SBarry Smith PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph 70595fce210SBarry Smith 70695fce210SBarry Smith Collective 70795fce210SBarry Smith 7084165533cSJose E. Roman Input Parameters: 70995fce210SBarry Smith + sf - communication object to duplicate 710cab54364SBarry Smith - opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`) 71195fce210SBarry Smith 7124165533cSJose E. Roman Output Parameter: 71395fce210SBarry Smith . newsf - new communication object 71495fce210SBarry Smith 71595fce210SBarry Smith Level: beginner 71695fce210SBarry Smith 71720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()` 71895fce210SBarry Smith @*/ 719d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf) 720d71ae5a4SJacob Faibussowitsch { 72129046d53SLisandro Dalcin PetscSFType type; 72297929ea7SJunchao Zhang MPI_Datatype dtype = MPIU_SCALAR; 72395fce210SBarry Smith 72495fce210SBarry Smith PetscFunctionBegin; 72529046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 72629046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf, opt, 2); 7274f572ea9SToby Isaac PetscAssertPointer(newsf, 3); 7289566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf)); 7299566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 7309566063dSJacob Faibussowitsch if (type) PetscCall(PetscSFSetType(*newsf, type)); 73135cb6cd3SPierre Jolivet (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag earlier since PetscSFSetGraph() below checks on this flag */ 73295fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 733dd5b3ca6SJunchao Zhang PetscSFCheckGraphSet(sf, 1); 734dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 73595fce210SBarry Smith PetscInt nroots, nleaves; 73695fce210SBarry Smith const PetscInt *ilocal; 73795fce210SBarry Smith const PetscSFNode *iremote; 7389566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7399566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 740dd5b3ca6SJunchao Zhang } else { 7419566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern)); 742dd5b3ca6SJunchao Zhang } 74395fce210SBarry Smith } 74497929ea7SJunchao Zhang /* Since oldtype is committed, so is newtype, according to MPI */ 7459566063dSJacob Faibussowitsch if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype)); 74697929ea7SJunchao Zhang (*newsf)->vscat.bs = sf->vscat.bs; 74797929ea7SJunchao Zhang (*newsf)->vscat.unit = dtype; 74897929ea7SJunchao Zhang (*newsf)->vscat.to_n = sf->vscat.to_n; 74997929ea7SJunchao Zhang (*newsf)->vscat.from_n = sf->vscat.from_n; 75097929ea7SJunchao Zhang /* Do not copy lsf. Build it on demand since it is rarely used */ 75197929ea7SJunchao Zhang 75220c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 75320c24465SJunchao Zhang (*newsf)->backend = sf->backend; 75471438e86SJunchao Zhang (*newsf)->unknown_input_stream = sf->unknown_input_stream; 75520c24465SJunchao Zhang (*newsf)->use_gpu_aware_mpi = sf->use_gpu_aware_mpi; 75620c24465SJunchao Zhang (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi; 75720c24465SJunchao Zhang #endif 758dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Duplicate, opt, *newsf); 75920c24465SJunchao Zhang /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */ 7603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76195fce210SBarry Smith } 76295fce210SBarry Smith 76395fce210SBarry Smith /*@C 76495fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 76595fce210SBarry Smith 76695fce210SBarry Smith Not Collective 76795fce210SBarry Smith 7684165533cSJose E. Roman Input Parameter: 76995fce210SBarry Smith . sf - star forest 77095fce210SBarry Smith 7714165533cSJose E. Roman Output Parameters: 77295fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 77395fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 77420662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers (if returned value is `NULL`, it means leaves are in contiguous storage) 77595fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 77695fce210SBarry Smith 777cab54364SBarry Smith Level: intermediate 778cab54364SBarry Smith 779373e0d91SLisandro Dalcin Notes: 78020662ed9SBarry Smith We are not currently requiring that the graph is set, thus returning `nroots` = -1 if it has not been set yet 781373e0d91SLisandro Dalcin 78220662ed9SBarry Smith The returned `ilocal` and `iremote` might contain values in different order than the input ones in `PetscSFSetGraph()` 783db2b9530SVaclav Hapla 7848dbb0df6SBarry Smith Fortran Notes: 78520662ed9SBarry Smith The returned `iremote` array is a copy and must be deallocated after use. Consequently, if you 78620662ed9SBarry Smith want to update the graph, you must call `PetscSFSetGraph()` after modifying the `iremote` array. 7878dbb0df6SBarry Smith 78820662ed9SBarry Smith To check for a `NULL` `ilocal` use 7898dbb0df6SBarry Smith $ if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then 790ca797d7aSLawrence Mitchell 79120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()` 79295fce210SBarry Smith @*/ 793d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 794d71ae5a4SJacob Faibussowitsch { 79595fce210SBarry Smith PetscFunctionBegin; 79695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 797b8dee149SJunchao Zhang if (sf->ops->GetGraph) { 798*f4f49eeaSPierre Jolivet PetscCall(sf->ops->GetGraph(sf, nroots, nleaves, ilocal, iremote)); 799b8dee149SJunchao Zhang } else { 80095fce210SBarry Smith if (nroots) *nroots = sf->nroots; 80195fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 80295fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 80395fce210SBarry Smith if (iremote) *iremote = sf->remote; 804b8dee149SJunchao Zhang } 8053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80695fce210SBarry Smith } 80795fce210SBarry Smith 80829046d53SLisandro Dalcin /*@ 80995fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 81095fce210SBarry Smith 81195fce210SBarry Smith Not Collective 81295fce210SBarry Smith 8134165533cSJose E. Roman Input Parameter: 81495fce210SBarry Smith . sf - star forest 81595fce210SBarry Smith 8164165533cSJose E. Roman Output Parameters: 81720662ed9SBarry Smith + minleaf - minimum active leaf on this process. Returns 0 if there are no leaves. 81820662ed9SBarry Smith - maxleaf - maximum active leaf on this process. Returns -1 if there are no leaves. 81995fce210SBarry Smith 82095fce210SBarry Smith Level: developer 82195fce210SBarry Smith 82220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 82395fce210SBarry Smith @*/ 824d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf) 825d71ae5a4SJacob Faibussowitsch { 82695fce210SBarry Smith PetscFunctionBegin; 82795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 82829046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 82995fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 83095fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 8313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83295fce210SBarry Smith } 83395fce210SBarry Smith 83495fce210SBarry Smith /*@C 835cab54364SBarry Smith PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database 836fe2efc57SMark 83720f4b53cSBarry Smith Collective 838fe2efc57SMark 839fe2efc57SMark Input Parameters: 840fe2efc57SMark + A - the star forest 841cab54364SBarry Smith . obj - Optional object that provides the prefix for the option names 842736c3998SJose E. Roman - name - command line option 843fe2efc57SMark 844fe2efc57SMark Level: intermediate 845cab54364SBarry Smith 84620662ed9SBarry Smith Note: 84720662ed9SBarry Smith See `PetscObjectViewFromOptions()` for possible `PetscViewer` and `PetscViewerFormat` 84820662ed9SBarry Smith 849db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()` 850fe2efc57SMark @*/ 851d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[]) 852d71ae5a4SJacob Faibussowitsch { 853fe2efc57SMark PetscFunctionBegin; 854fe2efc57SMark PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1); 8559566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 8563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 857fe2efc57SMark } 858fe2efc57SMark 859fe2efc57SMark /*@C 86095fce210SBarry Smith PetscSFView - view a star forest 86195fce210SBarry Smith 86295fce210SBarry Smith Collective 86395fce210SBarry Smith 8644165533cSJose E. Roman Input Parameters: 86595fce210SBarry Smith + sf - star forest 866cab54364SBarry Smith - viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD` 86795fce210SBarry Smith 86895fce210SBarry Smith Level: beginner 86995fce210SBarry Smith 870cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()` 87195fce210SBarry Smith @*/ 872d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer) 873d71ae5a4SJacob Faibussowitsch { 87495fce210SBarry Smith PetscBool iascii; 87595fce210SBarry Smith PetscViewerFormat format; 87695fce210SBarry Smith 87795fce210SBarry Smith PetscFunctionBegin; 87895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8799566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer)); 88095fce210SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 88195fce210SBarry Smith PetscCheckSameComm(sf, 1, viewer, 2); 8829566063dSJacob Faibussowitsch if (sf->graphset) PetscCall(PetscSFSetUp(sf)); 8839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 88453dd6d7dSJunchao Zhang if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) { 88595fce210SBarry Smith PetscMPIInt rank; 88681bfa7aaSJed Brown PetscInt ii, i, j; 88795fce210SBarry Smith 8889566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer)); 8899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 890dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 89180153354SVaclav Hapla if (!sf->graphset) { 8929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n")); 8939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 8943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89580153354SVaclav Hapla } 8969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 8979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, sf->nroots, sf->nleaves, sf->nranks)); 89948a46eb9SPierre Jolivet for (i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index)); 9009566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9019566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 90295fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 90381bfa7aaSJed Brown PetscMPIInt *tmpranks, *perm; 9049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm)); 9059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks)); 90681bfa7aaSJed Brown for (i = 0; i < sf->nranks; i++) perm[i] = i; 9079566063dSJacob Faibussowitsch PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm)); 9089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank)); 90981bfa7aaSJed Brown for (ii = 0; ii < sf->nranks; ii++) { 91081bfa7aaSJed Brown i = perm[ii]; 9119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i])); 91248a46eb9SPierre Jolivet for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j])); 91395fce210SBarry Smith } 9149566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmpranks, perm)); 91595fce210SBarry Smith } 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 918dd5b3ca6SJunchao Zhang } 9199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 92095fce210SBarry Smith } 921dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, View, viewer); 9223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92395fce210SBarry Smith } 92495fce210SBarry Smith 92595fce210SBarry Smith /*@C 926dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 92795fce210SBarry Smith 92895fce210SBarry Smith Not Collective 92995fce210SBarry Smith 9304165533cSJose E. Roman Input Parameter: 93195fce210SBarry Smith . sf - star forest 93295fce210SBarry Smith 9334165533cSJose E. Roman Output Parameters: 93495fce210SBarry Smith + nranks - number of ranks referenced by local part 93520662ed9SBarry Smith . ranks - [`nranks`] array of ranks 93620662ed9SBarry Smith . roffset - [`nranks`+1] offset in `rmine`/`rremote` for each rank 93720662ed9SBarry Smith . rmine - [`roffset`[`nranks`]] concatenated array holding local indices referencing each remote rank 93820662ed9SBarry Smith - rremote - [`roffset`[`nranks`]] concatenated array holding remote indices referenced for each remote rank 93995fce210SBarry Smith 94095fce210SBarry Smith Level: developer 94195fce210SBarry Smith 942cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()` 94395fce210SBarry Smith @*/ 944d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 945d71ae5a4SJacob Faibussowitsch { 94695fce210SBarry Smith PetscFunctionBegin; 94795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 94828b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 949dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 9509927e4dfSBarry Smith PetscUseTypeMethod(sf, GetRootRanks, nranks, ranks, roffset, rmine, rremote); 951dec1416fSJunchao Zhang } else { 952dec1416fSJunchao Zhang /* The generic implementation */ 95395fce210SBarry Smith if (nranks) *nranks = sf->nranks; 95495fce210SBarry Smith if (ranks) *ranks = sf->ranks; 95595fce210SBarry Smith if (roffset) *roffset = sf->roffset; 95695fce210SBarry Smith if (rmine) *rmine = sf->rmine; 95795fce210SBarry Smith if (rremote) *rremote = sf->rremote; 958dec1416fSJunchao Zhang } 9593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 96095fce210SBarry Smith } 96195fce210SBarry Smith 9628750ddebSJunchao Zhang /*@C 9638750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 9648750ddebSJunchao Zhang 9658750ddebSJunchao Zhang Not Collective 9668750ddebSJunchao Zhang 9674165533cSJose E. Roman Input Parameter: 9688750ddebSJunchao Zhang . sf - star forest 9698750ddebSJunchao Zhang 9704165533cSJose E. Roman Output Parameters: 9718750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 97220662ed9SBarry Smith . iranks - [`niranks`] array of ranks 97320662ed9SBarry Smith . ioffset - [`niranks`+1] offset in `irootloc` for each rank 97420662ed9SBarry Smith - irootloc - [`ioffset`[`niranks`]] concatenated array holding local indices of roots referenced by each leaf rank 9758750ddebSJunchao Zhang 9768750ddebSJunchao Zhang Level: developer 9778750ddebSJunchao Zhang 978cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 9798750ddebSJunchao Zhang @*/ 980d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 981d71ae5a4SJacob Faibussowitsch { 9828750ddebSJunchao Zhang PetscFunctionBegin; 9838750ddebSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 98428b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 9858750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 9869927e4dfSBarry Smith PetscUseTypeMethod(sf, GetLeafRanks, niranks, iranks, ioffset, irootloc); 9878750ddebSJunchao Zhang } else { 9888750ddebSJunchao Zhang PetscSFType type; 9899566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 99098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 9918750ddebSJunchao Zhang } 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9938750ddebSJunchao Zhang } 9948750ddebSJunchao Zhang 995d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list) 996d71ae5a4SJacob Faibussowitsch { 997b5a8e515SJed Brown PetscInt i; 998b5a8e515SJed Brown for (i = 0; i < n; i++) { 999b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 1000b5a8e515SJed Brown } 1001b5a8e515SJed Brown return PETSC_FALSE; 1002b5a8e515SJed Brown } 1003b5a8e515SJed Brown 100495fce210SBarry Smith /*@C 1005cab54364SBarry Smith PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations. 100621c688dcSJed Brown 100721c688dcSJed Brown Collective 100821c688dcSJed Brown 10094165533cSJose E. Roman Input Parameters: 1010cab54364SBarry Smith + sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called 1011cab54364SBarry Smith - dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange) 101221c688dcSJed Brown 101321c688dcSJed Brown Level: developer 101421c688dcSJed Brown 1015cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 101621c688dcSJed Brown @*/ 1017d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup) 1018d71ae5a4SJacob Faibussowitsch { 1019eec179cfSJacob Faibussowitsch PetscHMapI table; 1020eec179cfSJacob Faibussowitsch PetscHashIter pos; 1021b5a8e515SJed Brown PetscMPIInt size, groupsize, *groupranks; 1022247e8311SStefano Zampini PetscInt *rcount, *ranks; 1023247e8311SStefano Zampini PetscInt i, irank = -1, orank = -1; 102421c688dcSJed Brown 102521c688dcSJed Brown PetscFunctionBegin; 102621c688dcSJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 102729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 1029eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(10, &table)); 103021c688dcSJed Brown for (i = 0; i < sf->nleaves; i++) { 103121c688dcSJed Brown /* Log 1-based rank */ 1032eec179cfSJacob Faibussowitsch PetscCall(PetscHMapISetWithMode(table, sf->remote[i].rank + 1, 1, ADD_VALUES)); 103321c688dcSJed Brown } 1034eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(table, &sf->nranks)); 10359566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 10369566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks)); 1037eec179cfSJacob Faibussowitsch PetscHashIterBegin(table, pos); 103821c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 1039eec179cfSJacob Faibussowitsch PetscHashIterGetKey(table, pos, ranks[i]); 1040eec179cfSJacob Faibussowitsch PetscHashIterGetVal(table, pos, rcount[i]); 1041eec179cfSJacob Faibussowitsch PetscHashIterNext(table, pos); 104221c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 104321c688dcSJed Brown } 1044eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&table)); 1045b5a8e515SJed Brown 1046b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 1047b5a8e515SJed Brown { 10487fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 1049b5a8e515SJed Brown PetscMPIInt *dgroupranks; 10509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 10519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_size(dgroup, &groupsize)); 10529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &dgroupranks)); 10539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &groupranks)); 1054b5a8e515SJed Brown for (i = 0; i < groupsize; i++) dgroupranks[i] = i; 10559566063dSJacob Faibussowitsch if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks)); 10569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 10579566063dSJacob Faibussowitsch PetscCall(PetscFree(dgroupranks)); 1058b5a8e515SJed Brown } 1059b5a8e515SJed Brown 1060b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 1061b5a8e515SJed Brown for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) { 1062b5a8e515SJed Brown for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */ 1063b5a8e515SJed Brown if (InList(ranks[i], groupsize, groupranks)) break; 1064b5a8e515SJed Brown } 1065b5a8e515SJed Brown for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 1066b5a8e515SJed Brown if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break; 1067b5a8e515SJed Brown } 1068b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 1069b5a8e515SJed Brown PetscInt tmprank, tmpcount; 1070247e8311SStefano Zampini 1071b5a8e515SJed Brown tmprank = ranks[i]; 1072b5a8e515SJed Brown tmpcount = rcount[i]; 1073b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 1074b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 1075b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 1076b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 1077b5a8e515SJed Brown sf->ndranks++; 1078b5a8e515SJed Brown } 1079b5a8e515SJed Brown } 10809566063dSJacob Faibussowitsch PetscCall(PetscFree(groupranks)); 10819566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(sf->ndranks, ranks, rcount)); 10825c0db29aSPierre Jolivet if (rcount) PetscCall(PetscSortIntWithArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks)); 108321c688dcSJed Brown sf->roffset[0] = 0; 108421c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10859566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i)); 108621c688dcSJed Brown sf->roffset[i + 1] = sf->roffset[i] + rcount[i]; 108721c688dcSJed Brown rcount[i] = 0; 108821c688dcSJed Brown } 1089247e8311SStefano Zampini for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) { 1090247e8311SStefano Zampini /* short circuit */ 1091247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 109221c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 10939566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->ndranks, sf->ranks, &irank)); 1094b5a8e515SJed Brown if (irank < 0) { 10959566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank)); 1096b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 109721c688dcSJed Brown } 1098247e8311SStefano Zampini orank = sf->remote[i].rank; 1099247e8311SStefano Zampini } 110008401ef6SPierre Jolivet PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %" PetscInt_FMT " in array", sf->remote[i].rank); 110121c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 110221c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 110321c688dcSJed Brown rcount[irank]++; 110421c688dcSJed Brown } 11059566063dSJacob Faibussowitsch PetscCall(PetscFree2(rcount, ranks)); 11063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 110721c688dcSJed Brown } 110821c688dcSJed Brown 110921c688dcSJed Brown /*@C 111095fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 111195fce210SBarry Smith 111295fce210SBarry Smith Collective 111395fce210SBarry Smith 11144165533cSJose E. Roman Input Parameter: 111595fce210SBarry Smith . sf - star forest 111695fce210SBarry Smith 11174165533cSJose E. Roman Output Parameters: 111895fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 111995fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 112095fce210SBarry Smith 112195fce210SBarry Smith Level: developer 112295fce210SBarry Smith 1123cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()` 112495fce210SBarry Smith @*/ 1125d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing) 1126d71ae5a4SJacob Faibussowitsch { 11277fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 112895fce210SBarry Smith 112995fce210SBarry Smith PetscFunctionBegin; 113008401ef6SPierre Jolivet PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups"); 113195fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 113295fce210SBarry Smith PetscInt i; 113395fce210SBarry Smith const PetscInt *indegree; 113495fce210SBarry Smith PetscMPIInt rank, *outranks, *inranks; 113595fce210SBarry Smith PetscSFNode *remote; 113695fce210SBarry Smith PetscSF bgcount; 113795fce210SBarry Smith 113895fce210SBarry Smith /* Compute the number of incoming ranks */ 11399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nranks, &remote)); 114095fce210SBarry Smith for (i = 0; i < sf->nranks; i++) { 114195fce210SBarry Smith remote[i].rank = sf->ranks[i]; 114295fce210SBarry Smith remote[i].index = 0; 114395fce210SBarry Smith } 11449566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount)); 11459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 11469566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree)); 11479566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree)); 114895fce210SBarry Smith /* Enumerate the incoming ranks */ 11499566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks)); 11509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 115195fce210SBarry Smith for (i = 0; i < sf->nranks; i++) outranks[i] = rank; 11529566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks)); 11539566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks)); 11549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, indegree[0], inranks, &sf->ingroup)); 11569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 11579566063dSJacob Faibussowitsch PetscCall(PetscFree2(inranks, outranks)); 11589566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&bgcount)); 115995fce210SBarry Smith } 116095fce210SBarry Smith *incoming = sf->ingroup; 116195fce210SBarry Smith 116295fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 11639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup)); 11659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 116695fce210SBarry Smith } 116795fce210SBarry Smith *outgoing = sf->outgroup; 11683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 116995fce210SBarry Smith } 117095fce210SBarry Smith 117129046d53SLisandro Dalcin /*@ 1172cab54364SBarry Smith PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters 117395fce210SBarry Smith 117495fce210SBarry Smith Collective 117595fce210SBarry Smith 11764165533cSJose E. Roman Input Parameter: 117795fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 117895fce210SBarry Smith 11794165533cSJose E. Roman Output Parameter: 118095fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 118195fce210SBarry Smith 118295fce210SBarry Smith Level: developer 118395fce210SBarry Smith 1184cab54364SBarry Smith Note: 1185cab54364SBarry Smith In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi 118695fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 118795fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 118895fce210SBarry Smith 1189cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()` 119095fce210SBarry Smith @*/ 1191d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi) 1192d71ae5a4SJacob Faibussowitsch { 119395fce210SBarry Smith PetscFunctionBegin; 119495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 11954f572ea9SToby Isaac PetscAssertPointer(multi, 2); 119695fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 11979566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 119895fce210SBarry Smith *multi = sf->multi; 1199013b3241SStefano Zampini sf->multi->multi = sf->multi; 12003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 120195fce210SBarry Smith } 120295fce210SBarry Smith if (!sf->multi) { 120395fce210SBarry Smith const PetscInt *indegree; 12049837ea96SMatthew G. Knepley PetscInt i, *inoffset, *outones, *outoffset, maxlocal; 120595fce210SBarry Smith PetscSFNode *remote; 120629046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 12079566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &indegree)); 12089566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &indegree)); 12099566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset)); 121095fce210SBarry Smith inoffset[0] = 0; 121195fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i]; 12129837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outones[i] = 1; 12139566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 12149566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 121595fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 121676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Check that the expected number of increments occurred */ 1217ad540459SPierre Jolivet for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp"); 121876bd3646SJed Brown } 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &remote)); 122095fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 122195fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 122238e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 122395fce210SBarry Smith } 12249566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 1225013b3241SStefano Zampini sf->multi->multi = sf->multi; 12269566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 122795fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 122895fce210SBarry Smith PetscMPIInt rank; 122995fce210SBarry Smith PetscInt *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree; 123095fce210SBarry Smith PetscSFNode *newremote; 12319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 123295fce210SBarry Smith for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]); 12339566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset)); 12349837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outranks[i] = rank; 12359566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 12369566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 123795fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 123895fce210SBarry Smith for (i = 0; i < sf->nroots; i++) { 123995fce210SBarry Smith PetscInt j; 124095fce210SBarry Smith for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j; 12418e3a54c0SPierre Jolivet PetscCall(PetscSortIntWithArray(indegree[i], PetscSafePointerPlusOffset(inranks, inoffset[i]), tmpoffset)); 124295fce210SBarry Smith for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 124395fce210SBarry Smith } 12449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &newremote)); 124795fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 124895fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 124901365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 125095fce210SBarry Smith } 12519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER)); 12529566063dSJacob Faibussowitsch PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset)); 125395fce210SBarry Smith } 12549566063dSJacob Faibussowitsch PetscCall(PetscFree3(inoffset, outones, outoffset)); 125595fce210SBarry Smith } 125695fce210SBarry Smith *multi = sf->multi; 12573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 125895fce210SBarry Smith } 125995fce210SBarry Smith 126095fce210SBarry Smith /*@C 126120662ed9SBarry Smith PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots of a `PetscSF`, does not remap indices 126295fce210SBarry Smith 126395fce210SBarry Smith Collective 126495fce210SBarry Smith 12654165533cSJose E. Roman Input Parameters: 126695fce210SBarry Smith + sf - original star forest 1267ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 1268ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 126995fce210SBarry Smith 12704165533cSJose E. Roman Output Parameter: 1271cd620004SJunchao Zhang . esf - new star forest 127295fce210SBarry Smith 127395fce210SBarry Smith Level: advanced 127495fce210SBarry Smith 127595fce210SBarry Smith Note: 1276cab54364SBarry Smith To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can 127795fce210SBarry Smith be done by calling PetscSFGetGraph(). 127895fce210SBarry Smith 1279cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 128095fce210SBarry Smith @*/ 1281d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf) 1282d71ae5a4SJacob Faibussowitsch { 1283cd620004SJunchao Zhang PetscInt i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal; 1284cd620004SJunchao Zhang const PetscInt *ilocal; 1285cd620004SJunchao Zhang signed char *rootdata, *leafdata, *leafmem; 1286ba2a7774SJunchao Zhang const PetscSFNode *iremote; 1287f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1288f659e5c7SJunchao Zhang MPI_Comm comm; 128995fce210SBarry Smith 129095fce210SBarry Smith PetscFunctionBegin; 129195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 129229046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 12934f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 12944f572ea9SToby Isaac PetscAssertPointer(esf, 4); 12950511a646SMatthew G. Knepley 12969566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 12979566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0)); 12989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 12999566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 1300cd620004SJunchao Zhang 130176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or out of range indices */ 1302cd620004SJunchao Zhang PetscBool dups; 13039566063dSJacob Faibussowitsch PetscCall(PetscCheckDupsInt(nselected, selected, &dups)); 130428b400f6SJacob Faibussowitsch PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups"); 1305511e6246SStefano Zampini for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root index %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots); 1306cd620004SJunchao Zhang } 1307f659e5c7SJunchao Zhang 1308dbbe0bcdSBarry Smith if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf); 1309dbbe0bcdSBarry Smith else { 1310cd620004SJunchao Zhang /* A generic version of creating embedded sf */ 13119566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf)); 1312cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 13139566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem)); 13148e3a54c0SPierre Jolivet leafdata = PetscSafePointerPlusOffset(leafmem, -minleaf); 1315cd620004SJunchao Zhang /* Tag selected roots and bcast to leaves */ 1316cd620004SJunchao Zhang for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1; 13179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 13189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 1319ba2a7774SJunchao Zhang 1320cd620004SJunchao Zhang /* Build esf with leaves that are still connected */ 1321cd620004SJunchao Zhang esf_nleaves = 0; 1322cd620004SJunchao Zhang for (i = 0; i < nleaves; i++) { 1323cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1324cd620004SJunchao Zhang /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs 1325cd620004SJunchao Zhang with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555 1326cd620004SJunchao Zhang */ 1327cd620004SJunchao Zhang esf_nleaves += (leafdata[j] ? 1 : 0); 1328cd620004SJunchao Zhang } 13299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal)); 13309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_iremote)); 1331cd620004SJunchao Zhang for (i = n = 0; i < nleaves; i++) { 1332cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1333cd620004SJunchao Zhang if (leafdata[j]) { 1334cd620004SJunchao Zhang new_ilocal[n] = j; 1335cd620004SJunchao Zhang new_iremote[n].rank = iremote[i].rank; 1336cd620004SJunchao Zhang new_iremote[n].index = iremote[i].index; 1337fc1ede2bSMatthew G. Knepley ++n; 133895fce210SBarry Smith } 133995fce210SBarry Smith } 13409566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, esf)); 13419566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*esf)); 13429566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 13439566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootdata, leafmem)); 1344f659e5c7SJunchao Zhang } 13459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0)); 13463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 134795fce210SBarry Smith } 134895fce210SBarry Smith 13492f5fb4c2SMatthew G. Knepley /*@C 135020662ed9SBarry Smith PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves of a `PetscSF`, does not remap indices 13512f5fb4c2SMatthew G. Knepley 13522f5fb4c2SMatthew G. Knepley Collective 13532f5fb4c2SMatthew G. Knepley 13544165533cSJose E. Roman Input Parameters: 13552f5fb4c2SMatthew G. Knepley + sf - original star forest 1356f659e5c7SJunchao Zhang . nselected - number of selected leaves on this process 1357f659e5c7SJunchao Zhang - selected - indices of the selected leaves on this process 13582f5fb4c2SMatthew G. Knepley 13594165533cSJose E. Roman Output Parameter: 13602f5fb4c2SMatthew G. Knepley . newsf - new star forest 13612f5fb4c2SMatthew G. Knepley 13622f5fb4c2SMatthew G. Knepley Level: advanced 13632f5fb4c2SMatthew G. Knepley 1364cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 13652f5fb4c2SMatthew G. Knepley @*/ 1366d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf) 1367d71ae5a4SJacob Faibussowitsch { 1368f659e5c7SJunchao Zhang const PetscSFNode *iremote; 1369f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1370f659e5c7SJunchao Zhang const PetscInt *ilocal; 1371f659e5c7SJunchao Zhang PetscInt i, nroots, *leaves, *new_ilocal; 1372f659e5c7SJunchao Zhang MPI_Comm comm; 13732f5fb4c2SMatthew G. Knepley 13742f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 13752f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 137629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 13774f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 13784f572ea9SToby Isaac PetscAssertPointer(newsf, 4); 13792f5fb4c2SMatthew G. Knepley 1380f659e5c7SJunchao Zhang /* Uniq selected[] and put results in leaves[] */ 13819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 13829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &leaves)); 13839566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(leaves, selected, nselected)); 13849566063dSJacob Faibussowitsch PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves)); 138508401ef6SPierre Jolivet PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves); 1386f659e5c7SJunchao Zhang 1387f659e5c7SJunchao Zhang /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */ 1388dbbe0bcdSBarry Smith if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf); 1389dbbe0bcdSBarry Smith else { 13909566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote)); 13919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_ilocal)); 13929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_iremote)); 1393f659e5c7SJunchao Zhang for (i = 0; i < nselected; ++i) { 1394f659e5c7SJunchao Zhang const PetscInt l = leaves[i]; 1395f659e5c7SJunchao Zhang new_ilocal[i] = ilocal ? ilocal[l] : l; 1396f659e5c7SJunchao Zhang new_iremote[i].rank = iremote[l].rank; 1397f659e5c7SJunchao Zhang new_iremote[i].index = iremote[l].index; 13982f5fb4c2SMatthew G. Knepley } 13999566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf)); 14009566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 1401f659e5c7SJunchao Zhang } 14029566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14042f5fb4c2SMatthew G. Knepley } 14052f5fb4c2SMatthew G. Knepley 140695fce210SBarry Smith /*@C 1407cab54364SBarry Smith PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()` 14083482bfa8SJunchao Zhang 1409c3339decSBarry Smith Collective 14103482bfa8SJunchao Zhang 14114165533cSJose E. Roman Input Parameters: 14123482bfa8SJunchao Zhang + sf - star forest on which to communicate 14133482bfa8SJunchao Zhang . unit - data type associated with each node 14143482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14153482bfa8SJunchao Zhang - op - operation to use for reduction 14163482bfa8SJunchao Zhang 14174165533cSJose E. Roman Output Parameter: 14183482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14193482bfa8SJunchao Zhang 14203482bfa8SJunchao Zhang Level: intermediate 14213482bfa8SJunchao Zhang 142220662ed9SBarry Smith Note: 142320662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1424da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1425cab54364SBarry Smith use `PetscSFBcastWithMemTypeBegin()` instead. 1426cab54364SBarry Smith 1427cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()` 14283482bfa8SJunchao Zhang @*/ 1429d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1430d71ae5a4SJacob Faibussowitsch { 1431eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 14323482bfa8SJunchao Zhang 14333482bfa8SJunchao Zhang PetscFunctionBegin; 14343482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14359566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14369566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14379566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 14389566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1439dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14409566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14423482bfa8SJunchao Zhang } 14433482bfa8SJunchao Zhang 14443482bfa8SJunchao Zhang /*@C 144520662ed9SBarry Smith PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call 144620662ed9SBarry Smith to `PetscSFBcastEnd()` 1447d0295fc0SJunchao Zhang 1448c3339decSBarry Smith Collective 1449d0295fc0SJunchao Zhang 14504165533cSJose E. Roman Input Parameters: 1451d0295fc0SJunchao Zhang + sf - star forest on which to communicate 1452d0295fc0SJunchao Zhang . unit - data type associated with each node 1453d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1454d0295fc0SJunchao Zhang . rootdata - buffer to broadcast 1455d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1456d0295fc0SJunchao Zhang - op - operation to use for reduction 1457d0295fc0SJunchao Zhang 14584165533cSJose E. Roman Output Parameter: 1459d0295fc0SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 1460d0295fc0SJunchao Zhang 1461d0295fc0SJunchao Zhang Level: intermediate 1462d0295fc0SJunchao Zhang 1463cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()` 1464d0295fc0SJunchao Zhang @*/ 1465d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 1466d71ae5a4SJacob Faibussowitsch { 1467d0295fc0SJunchao Zhang PetscFunctionBegin; 1468d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14699566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14709566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1471dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14729566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1474d0295fc0SJunchao Zhang } 1475d0295fc0SJunchao Zhang 1476d0295fc0SJunchao Zhang /*@C 147720662ed9SBarry Smith PetscSFBcastEnd - end a broadcast and reduce operation started with `PetscSFBcastBegin()` or `PetscSFBcastWithMemTypeBegin()` 14783482bfa8SJunchao Zhang 14793482bfa8SJunchao Zhang Collective 14803482bfa8SJunchao Zhang 14814165533cSJose E. Roman Input Parameters: 14823482bfa8SJunchao Zhang + sf - star forest 14833482bfa8SJunchao Zhang . unit - data type 14843482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14853482bfa8SJunchao Zhang - op - operation to use for reduction 14863482bfa8SJunchao Zhang 14874165533cSJose E. Roman Output Parameter: 14883482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14893482bfa8SJunchao Zhang 14903482bfa8SJunchao Zhang Level: intermediate 14913482bfa8SJunchao Zhang 1492cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()` 14933482bfa8SJunchao Zhang @*/ 1494d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1495d71ae5a4SJacob Faibussowitsch { 14963482bfa8SJunchao Zhang PetscFunctionBegin; 14973482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14989566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0)); 1499dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op); 15009566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0)); 15013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15023482bfa8SJunchao Zhang } 15033482bfa8SJunchao Zhang 15043482bfa8SJunchao Zhang /*@C 1505cab54364SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()` 150695fce210SBarry Smith 150795fce210SBarry Smith Collective 150895fce210SBarry Smith 15094165533cSJose E. Roman Input Parameters: 151095fce210SBarry Smith + sf - star forest 151195fce210SBarry Smith . unit - data type 151295fce210SBarry Smith . leafdata - values to reduce 151395fce210SBarry Smith - op - reduction operation 151495fce210SBarry Smith 15154165533cSJose E. Roman Output Parameter: 151695fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 151795fce210SBarry Smith 151895fce210SBarry Smith Level: intermediate 151995fce210SBarry Smith 152020662ed9SBarry Smith Note: 152120662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1522da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1523cab54364SBarry Smith use `PetscSFReduceWithMemTypeBegin()` instead. 1524d0295fc0SJunchao Zhang 152520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`, `PetscSFReduceEnd()` 152695fce210SBarry Smith @*/ 1527d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1528d71ae5a4SJacob Faibussowitsch { 1529eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 153095fce210SBarry Smith 153195fce210SBarry Smith PetscFunctionBegin; 153295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15339566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15349566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15359566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 15369566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1537*f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15389566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 154095fce210SBarry Smith } 154195fce210SBarry Smith 154295fce210SBarry Smith /*@C 1543cab54364SBarry Smith PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()` 1544d0295fc0SJunchao Zhang 1545d0295fc0SJunchao Zhang Collective 1546d0295fc0SJunchao Zhang 15474165533cSJose E. Roman Input Parameters: 1548d0295fc0SJunchao Zhang + sf - star forest 1549d0295fc0SJunchao Zhang . unit - data type 1550d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1551d0295fc0SJunchao Zhang . leafdata - values to reduce 1552d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1553d0295fc0SJunchao Zhang - op - reduction operation 1554d0295fc0SJunchao Zhang 15554165533cSJose E. Roman Output Parameter: 1556d0295fc0SJunchao Zhang . rootdata - result of reduction of values from all leaves of each root 1557d0295fc0SJunchao Zhang 1558d0295fc0SJunchao Zhang Level: intermediate 1559d0295fc0SJunchao Zhang 156020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()`, `PetscSFReduceEnd()` 1561d0295fc0SJunchao Zhang @*/ 1562d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 1563d71ae5a4SJacob Faibussowitsch { 1564d0295fc0SJunchao Zhang PetscFunctionBegin; 1565d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15679566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 1568*f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15699566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1571d0295fc0SJunchao Zhang } 1572d0295fc0SJunchao Zhang 1573d0295fc0SJunchao Zhang /*@C 157420662ed9SBarry Smith PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` or `PetscSFReduceWithMemTypeBegin()` 157595fce210SBarry Smith 157695fce210SBarry Smith Collective 157795fce210SBarry Smith 15784165533cSJose E. Roman Input Parameters: 157995fce210SBarry Smith + sf - star forest 158095fce210SBarry Smith . unit - data type 158195fce210SBarry Smith . leafdata - values to reduce 158295fce210SBarry Smith - op - reduction operation 158395fce210SBarry Smith 15844165533cSJose E. Roman Output Parameter: 158595fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 158695fce210SBarry Smith 158795fce210SBarry Smith Level: intermediate 158895fce210SBarry Smith 158920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()`, `PetscSFReduceBegin()`, `PetscSFReduceWithMemTypeBegin()` 159095fce210SBarry Smith @*/ 1591d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1592d71ae5a4SJacob Faibussowitsch { 159395fce210SBarry Smith PetscFunctionBegin; 159495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15959566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 1596dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op); 15979566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 15983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159995fce210SBarry Smith } 160095fce210SBarry Smith 160195fce210SBarry Smith /*@C 1602cab54364SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, 1603cab54364SBarry Smith to be completed with `PetscSFFetchAndOpEnd()` 1604a1729e3fSJunchao Zhang 1605a1729e3fSJunchao Zhang Collective 1606a1729e3fSJunchao Zhang 16074165533cSJose E. Roman Input Parameters: 1608a1729e3fSJunchao Zhang + sf - star forest 1609a1729e3fSJunchao Zhang . unit - data type 1610a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1611a1729e3fSJunchao Zhang - op - operation to use for reduction 1612a1729e3fSJunchao Zhang 16134165533cSJose E. Roman Output Parameters: 1614a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1615a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1616a1729e3fSJunchao Zhang 1617a1729e3fSJunchao Zhang Level: advanced 1618a1729e3fSJunchao Zhang 1619a1729e3fSJunchao Zhang Note: 1620a1729e3fSJunchao Zhang The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 1621a1729e3fSJunchao Zhang might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 1622a1729e3fSJunchao Zhang not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 1623a1729e3fSJunchao Zhang integers. 1624a1729e3fSJunchao Zhang 1625cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1626a1729e3fSJunchao Zhang @*/ 1627d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1628d71ae5a4SJacob Faibussowitsch { 1629eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype, leafupdatemtype; 1630a1729e3fSJunchao Zhang 1631a1729e3fSJunchao Zhang PetscFunctionBegin; 1632a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16339566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16349566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16359566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 16369566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 16379566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype)); 163808401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1639dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16409566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1642a1729e3fSJunchao Zhang } 1643a1729e3fSJunchao Zhang 1644a1729e3fSJunchao Zhang /*@C 1645cab54364SBarry Smith PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by 1646cab54364SBarry Smith applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()` 1647d3b3e55cSJunchao Zhang 1648d3b3e55cSJunchao Zhang Collective 1649d3b3e55cSJunchao Zhang 1650d3b3e55cSJunchao Zhang Input Parameters: 1651d3b3e55cSJunchao Zhang + sf - star forest 1652d3b3e55cSJunchao Zhang . unit - data type 1653d3b3e55cSJunchao Zhang . rootmtype - memory type of rootdata 1654d3b3e55cSJunchao Zhang . leafmtype - memory type of leafdata 1655d3b3e55cSJunchao Zhang . leafdata - leaf values to use in reduction 1656d3b3e55cSJunchao Zhang . leafupdatemtype - memory type of leafupdate 1657d3b3e55cSJunchao Zhang - op - operation to use for reduction 1658d3b3e55cSJunchao Zhang 1659d3b3e55cSJunchao Zhang Output Parameters: 1660d3b3e55cSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1661d3b3e55cSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1662d3b3e55cSJunchao Zhang 1663d3b3e55cSJunchao Zhang Level: advanced 1664d3b3e55cSJunchao Zhang 1665cab54364SBarry Smith Note: 1666cab54364SBarry Smith See `PetscSFFetchAndOpBegin()` for more details. 1667d3b3e55cSJunchao Zhang 166820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpEnd()` 1669d3b3e55cSJunchao Zhang @*/ 1670d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op) 1671d71ae5a4SJacob Faibussowitsch { 1672d3b3e55cSJunchao Zhang PetscFunctionBegin; 1673d3b3e55cSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16749566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 167608401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1677dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1680d3b3e55cSJunchao Zhang } 1681d3b3e55cSJunchao Zhang 1682d3b3e55cSJunchao Zhang /*@C 168320662ed9SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to `PetscSFFetchAndOpBegin()` or `PetscSFFetchAndOpWithMemTypeBegin()` 168420662ed9SBarry Smith to fetch values from roots and update atomically by applying operation using my leaf value 1685a1729e3fSJunchao Zhang 1686a1729e3fSJunchao Zhang Collective 1687a1729e3fSJunchao Zhang 16884165533cSJose E. Roman Input Parameters: 1689a1729e3fSJunchao Zhang + sf - star forest 1690a1729e3fSJunchao Zhang . unit - data type 1691a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1692a1729e3fSJunchao Zhang - op - operation to use for reduction 1693a1729e3fSJunchao Zhang 16944165533cSJose E. Roman Output Parameters: 1695a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1696a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1697a1729e3fSJunchao Zhang 1698a1729e3fSJunchao Zhang Level: advanced 1699a1729e3fSJunchao Zhang 170020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpBegin()`, `PetscSFFetchAndOpWithMemTypeBegin()` 1701a1729e3fSJunchao Zhang @*/ 1702d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1703d71ae5a4SJacob Faibussowitsch { 1704a1729e3fSJunchao Zhang PetscFunctionBegin; 1705a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1707dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op); 17089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 17093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1710a1729e3fSJunchao Zhang } 1711a1729e3fSJunchao Zhang 1712a1729e3fSJunchao Zhang /*@C 1713cab54364SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()` 171495fce210SBarry Smith 171595fce210SBarry Smith Collective 171695fce210SBarry Smith 17174165533cSJose E. Roman Input Parameter: 171895fce210SBarry Smith . sf - star forest 171995fce210SBarry Smith 17204165533cSJose E. Roman Output Parameter: 172195fce210SBarry Smith . degree - degree of each root vertex 172295fce210SBarry Smith 172395fce210SBarry Smith Level: advanced 172495fce210SBarry Smith 1725cab54364SBarry Smith Note: 172620662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1727ffe67aa5SVáclav Hapla 1728cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()` 172995fce210SBarry Smith @*/ 1730d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt **degree) 1731d71ae5a4SJacob Faibussowitsch { 173295fce210SBarry Smith PetscFunctionBegin; 173395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 173495fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 17354f572ea9SToby Isaac PetscAssertPointer(degree, 2); 1736803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 17375b0d146aSStefano Zampini PetscInt i, nroots = sf->nroots, maxlocal; 173828b400f6SJacob Faibussowitsch PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 17395b0d146aSStefano Zampini maxlocal = sf->maxleaf - sf->minleaf + 1; 17409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &sf->degree)); 17419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 174229046d53SLisandro Dalcin for (i = 0; i < nroots; i++) sf->degree[i] = 0; 17439837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1; 17449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 174595fce210SBarry Smith } 174695fce210SBarry Smith *degree = NULL; 17473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 174895fce210SBarry Smith } 174995fce210SBarry Smith 175095fce210SBarry Smith /*@C 1751cab54364SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()` 175295fce210SBarry Smith 175395fce210SBarry Smith Collective 175495fce210SBarry Smith 17554165533cSJose E. Roman Input Parameter: 175695fce210SBarry Smith . sf - star forest 175795fce210SBarry Smith 17584165533cSJose E. Roman Output Parameter: 175995fce210SBarry Smith . degree - degree of each root vertex 176095fce210SBarry Smith 176195fce210SBarry Smith Level: developer 176295fce210SBarry Smith 1763cab54364SBarry Smith Note: 176420662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1765ffe67aa5SVáclav Hapla 1766cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()` 176795fce210SBarry Smith @*/ 1768d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree) 1769d71ae5a4SJacob Faibussowitsch { 177095fce210SBarry Smith PetscFunctionBegin; 177195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 177295fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 17734f572ea9SToby Isaac PetscAssertPointer(degree, 2); 177495fce210SBarry Smith if (!sf->degreeknown) { 177528b400f6SJacob Faibussowitsch PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 17769566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 17779566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degreetmp)); 177895fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 177995fce210SBarry Smith } 178095fce210SBarry Smith *degree = sf->degree; 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178295fce210SBarry Smith } 178395fce210SBarry Smith 1784673100f5SVaclav Hapla /*@C 178520662ed9SBarry Smith PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-`PetscSF` returned by `PetscSFGetMultiSF()`). 178666dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1787673100f5SVaclav Hapla 1788673100f5SVaclav Hapla Collective 1789673100f5SVaclav Hapla 17904165533cSJose E. Roman Input Parameters: 1791673100f5SVaclav Hapla + sf - star forest 1792cab54364SBarry Smith - degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()` 1793673100f5SVaclav Hapla 17944165533cSJose E. Roman Output Parameters: 179520662ed9SBarry Smith + nMultiRoots - (optional) number of multi-roots (roots of multi-`PetscSF`) 179620662ed9SBarry Smith - multiRootsOrigNumbering - original indices of multi-roots; length of this array is `nMultiRoots` 1797673100f5SVaclav Hapla 1798673100f5SVaclav Hapla Level: developer 1799673100f5SVaclav Hapla 1800cab54364SBarry Smith Note: 180120662ed9SBarry Smith The returned array `multiRootsOrigNumbering` is newly allocated and should be destroyed with `PetscFree()` when no longer needed. 1802ffe67aa5SVáclav Hapla 1803cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()` 1804673100f5SVaclav Hapla @*/ 1805d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1806d71ae5a4SJacob Faibussowitsch { 1807673100f5SVaclav Hapla PetscSF msf; 1808673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1809673100f5SVaclav Hapla 1810673100f5SVaclav Hapla PetscFunctionBegin; 1811673100f5SVaclav Hapla PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18129566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 18134f572ea9SToby Isaac if (nroots) PetscAssertPointer(degree, 2); 18144f572ea9SToby Isaac if (nMultiRoots) PetscAssertPointer(nMultiRoots, 3); 18154f572ea9SToby Isaac PetscAssertPointer(multiRootsOrigNumbering, 4); 18169566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &msf)); 18179566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL)); 18189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering)); 1819673100f5SVaclav Hapla for (i = 0, j = 0, k = 0; i < nroots; i++) { 1820673100f5SVaclav Hapla if (!degree[i]) continue; 1821ad540459SPierre Jolivet for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i; 1822673100f5SVaclav Hapla } 182308401ef6SPierre Jolivet PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail"); 182466dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 18253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1826673100f5SVaclav Hapla } 1827673100f5SVaclav Hapla 182895fce210SBarry Smith /*@C 1829cab54364SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()` 183095fce210SBarry Smith 183195fce210SBarry Smith Collective 183295fce210SBarry Smith 18334165533cSJose E. Roman Input Parameters: 183495fce210SBarry Smith + sf - star forest 183595fce210SBarry Smith . unit - data type 183695fce210SBarry Smith - leafdata - leaf data to gather to roots 183795fce210SBarry Smith 18384165533cSJose E. Roman Output Parameter: 183995fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 184095fce210SBarry Smith 184195fce210SBarry Smith Level: intermediate 184295fce210SBarry Smith 1843cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 184495fce210SBarry Smith @*/ 1845d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1846d71ae5a4SJacob Faibussowitsch { 1847a5526d50SJunchao Zhang PetscSF multi = NULL; 184895fce210SBarry Smith 184995fce210SBarry Smith PetscFunctionBegin; 185095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18519566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 18529566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18539566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 18543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 185595fce210SBarry Smith } 185695fce210SBarry Smith 185795fce210SBarry Smith /*@C 1858cab54364SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()` 185995fce210SBarry Smith 186095fce210SBarry Smith Collective 186195fce210SBarry Smith 18624165533cSJose E. Roman Input Parameters: 186395fce210SBarry Smith + sf - star forest 186495fce210SBarry Smith . unit - data type 186595fce210SBarry Smith - leafdata - leaf data to gather to roots 186695fce210SBarry Smith 18674165533cSJose E. Roman Output Parameter: 186895fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 186995fce210SBarry Smith 187095fce210SBarry Smith Level: intermediate 187195fce210SBarry Smith 1872cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 187395fce210SBarry Smith @*/ 1874d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1875d71ae5a4SJacob Faibussowitsch { 1876a5526d50SJunchao Zhang PetscSF multi = NULL; 187795fce210SBarry Smith 187895fce210SBarry Smith PetscFunctionBegin; 187995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18809566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18819566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 18823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188395fce210SBarry Smith } 188495fce210SBarry Smith 188595fce210SBarry Smith /*@C 1886cab54364SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()` 188795fce210SBarry Smith 188895fce210SBarry Smith Collective 188995fce210SBarry Smith 18904165533cSJose E. Roman Input Parameters: 189195fce210SBarry Smith + sf - star forest 189295fce210SBarry Smith . unit - data type 189395fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 189495fce210SBarry Smith 18954165533cSJose E. Roman Output Parameter: 189695fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 189795fce210SBarry Smith 189895fce210SBarry Smith Level: intermediate 189995fce210SBarry Smith 190020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterEnd()` 190195fce210SBarry Smith @*/ 1902d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1903d71ae5a4SJacob Faibussowitsch { 1904a5526d50SJunchao Zhang PetscSF multi = NULL; 190595fce210SBarry Smith 190695fce210SBarry Smith PetscFunctionBegin; 190795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19089566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 19099566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 191295fce210SBarry Smith } 191395fce210SBarry Smith 191495fce210SBarry Smith /*@C 1915cab54364SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()` 191695fce210SBarry Smith 191795fce210SBarry Smith Collective 191895fce210SBarry Smith 19194165533cSJose E. Roman Input Parameters: 192095fce210SBarry Smith + sf - star forest 192195fce210SBarry Smith . unit - data type 192295fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 192395fce210SBarry Smith 19244165533cSJose E. Roman Output Parameter: 192595fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 192695fce210SBarry Smith 192795fce210SBarry Smith Level: intermediate 192895fce210SBarry Smith 192920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterBegin()` 193095fce210SBarry Smith @*/ 1931d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1932d71ae5a4SJacob Faibussowitsch { 1933a5526d50SJunchao Zhang PetscSF multi = NULL; 193495fce210SBarry Smith 193595fce210SBarry Smith PetscFunctionBegin; 193695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19379566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 194095fce210SBarry Smith } 1941a7b3aa13SAta Mesgarnejad 1942d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf) 1943d71ae5a4SJacob Faibussowitsch { 1944a072220fSLawrence Mitchell PetscInt i, n, nleaves; 1945a072220fSLawrence Mitchell const PetscInt *ilocal = NULL; 1946a072220fSLawrence Mitchell PetscHSetI seen; 1947a072220fSLawrence Mitchell 1948a072220fSLawrence Mitchell PetscFunctionBegin; 1949b458e8f1SJose E. Roman if (PetscDefined(USE_DEBUG)) { 19509566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL)); 19519566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seen)); 1952a072220fSLawrence Mitchell for (i = 0; i < nleaves; i++) { 1953a072220fSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 19549566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(seen, leaf)); 1955a072220fSLawrence Mitchell } 19569566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(seen, &n)); 195708401ef6SPierre Jolivet PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique"); 19589566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seen)); 1959b458e8f1SJose E. Roman } 19603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1961a072220fSLawrence Mitchell } 196254729392SStefano Zampini 1963a7b3aa13SAta Mesgarnejad /*@ 1964cab54364SBarry Smith PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view 1965a7b3aa13SAta Mesgarnejad 1966a7b3aa13SAta Mesgarnejad Input Parameters: 1967cab54364SBarry Smith + sfA - The first `PetscSF` 1968cab54364SBarry Smith - sfB - The second `PetscSF` 1969a7b3aa13SAta Mesgarnejad 19702fe279fdSBarry Smith Output Parameter: 1971cab54364SBarry Smith . sfBA - The composite `PetscSF` 1972a7b3aa13SAta Mesgarnejad 1973a7b3aa13SAta Mesgarnejad Level: developer 1974a7b3aa13SAta Mesgarnejad 1975a072220fSLawrence Mitchell Notes: 1976cab54364SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 197754729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. 197854729392SStefano Zampini 197920662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s root space might be partially overlapped. The composition builds 198020662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s leaves only when there is a path between them. Unconnected 198120662ed9SBarry Smith nodes (roots or leaves) are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a 198220662ed9SBarry Smith `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfA`, then a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfB`, on connected nodes. 1983a072220fSLawrence Mitchell 1984db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 1985a7b3aa13SAta Mesgarnejad @*/ 1986d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1987d71ae5a4SJacob Faibussowitsch { 1988a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1989d41018fbSJunchao Zhang PetscSFNode *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB; 199054729392SStefano Zampini const PetscInt *localPointsA, *localPointsB; 199154729392SStefano Zampini PetscInt *localPointsBA; 199254729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA; 199354729392SStefano Zampini PetscBool denseB; 1994a7b3aa13SAta Mesgarnejad 1995a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1996a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 199729046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 199829046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 199929046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 200054729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 20014f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 20029566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 20039566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 200454729392SStefano Zampini 20059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 20069566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 200720662ed9SBarry Smith /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size 200820662ed9SBarry Smith numRootsB; otherwise, garbage will be broadcasted. 200920662ed9SBarry Smith Example (comm size = 1): 201020662ed9SBarry Smith sfA: 0 <- (0, 0) 201120662ed9SBarry Smith sfB: 100 <- (0, 0) 201220662ed9SBarry Smith 101 <- (0, 1) 201320662ed9SBarry Smith Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget 201420662ed9SBarry Smith of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would 201520662ed9SBarry Smith receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on 201620662ed9SBarry Smith remotePointsA; if not recasted, point 101 would receive a garbage value. */ 20179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA)); 201854729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 201954729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 202054729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 202154729392SStefano Zampini } 202254729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 20230ea77edaSksagiyam PetscInt localp = localPointsA ? localPointsA[i] : i; 20240ea77edaSksagiyam 20250ea77edaSksagiyam if (localp >= numRootsB) continue; 20260ea77edaSksagiyam reorderedRemotePointsA[localp] = remotePointsA[i]; 202754729392SStefano Zampini } 2028d41018fbSJunchao Zhang remotePointsA = reorderedRemotePointsA; 20299566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 20309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB)); 20310ea77edaSksagiyam for (i = 0; i < maxleaf - minleaf + 1; i++) { 20320ea77edaSksagiyam leafdataB[i].rank = -1; 20330ea77edaSksagiyam leafdataB[i].index = -1; 20340ea77edaSksagiyam } 20358e3a54c0SPierre Jolivet PetscCall(PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20368e3a54c0SPierre Jolivet PetscCall(PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20379566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 2038d41018fbSJunchao Zhang 203954729392SStefano Zampini denseB = (PetscBool)!localPointsB; 204054729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 204154729392SStefano Zampini if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE; 204254729392SStefano Zampini else numLeavesBA++; 204354729392SStefano Zampini } 204454729392SStefano Zampini if (denseB) { 2045d41018fbSJunchao Zhang localPointsBA = NULL; 2046d41018fbSJunchao Zhang remotePointsBA = leafdataB; 2047d41018fbSJunchao Zhang } else { 20489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA)); 20499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA)); 205054729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 205154729392SStefano Zampini const PetscInt l = localPointsB ? localPointsB[i] : i; 205254729392SStefano Zampini 205354729392SStefano Zampini if (leafdataB[l - minleaf].rank == -1) continue; 205454729392SStefano Zampini remotePointsBA[numLeavesBA] = leafdataB[l - minleaf]; 205554729392SStefano Zampini localPointsBA[numLeavesBA] = l; 205654729392SStefano Zampini numLeavesBA++; 205754729392SStefano Zampini } 20589566063dSJacob Faibussowitsch PetscCall(PetscFree(leafdataB)); 2059d41018fbSJunchao Zhang } 20609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 20619566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 20629566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 20633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2064a7b3aa13SAta Mesgarnejad } 20651c6ba672SJunchao Zhang 206604c0ada0SJunchao Zhang /*@ 2067cab54364SBarry Smith PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one 206804c0ada0SJunchao Zhang 206904c0ada0SJunchao Zhang Input Parameters: 2070cab54364SBarry Smith + sfA - The first `PetscSF` 2071cab54364SBarry Smith - sfB - The second `PetscSF` 207204c0ada0SJunchao Zhang 20732fe279fdSBarry Smith Output Parameter: 2074cab54364SBarry Smith . sfBA - The composite `PetscSF`. 207504c0ada0SJunchao Zhang 207604c0ada0SJunchao Zhang Level: developer 207704c0ada0SJunchao Zhang 207854729392SStefano Zampini Notes: 207920662ed9SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 208054729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the 208120662ed9SBarry Smith second `PetscSF` must have a degree of 1, i.e., no roots have more than one leaf connected. 208254729392SStefano Zampini 208320662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s leaf space might be partially overlapped. The composition builds 208420662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s roots only when there is a path between them. Unconnected 208520662ed9SBarry Smith roots are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` 208620662ed9SBarry Smith on `sfA`, then 208720662ed9SBarry Smith a `PetscSFReduceBegin()`/`PetscSFReduceEnd()` on `sfB`, on connected roots. 208854729392SStefano Zampini 2089db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()` 209004c0ada0SJunchao Zhang @*/ 2091d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2092d71ae5a4SJacob Faibussowitsch { 209304c0ada0SJunchao Zhang const PetscSFNode *remotePointsA, *remotePointsB; 209404c0ada0SJunchao Zhang PetscSFNode *remotePointsBA; 209504c0ada0SJunchao Zhang const PetscInt *localPointsA, *localPointsB; 209654729392SStefano Zampini PetscSFNode *reorderedRemotePointsA = NULL; 209754729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA; 20985b0d146aSStefano Zampini MPI_Op op; 20995b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21005b0d146aSStefano Zampini PetscBool iswin; 21015b0d146aSStefano Zampini #endif 210204c0ada0SJunchao Zhang 210304c0ada0SJunchao Zhang PetscFunctionBegin; 210404c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 210504c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfA, 1); 210604c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 210704c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfB, 2); 210854729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 21094f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 21109566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 21119566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 211254729392SStefano Zampini 21139566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 21149566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 21155b0d146aSStefano Zampini 21165b0d146aSStefano Zampini /* TODO: Check roots of sfB have degree of 1 */ 21175b0d146aSStefano Zampini /* Once we implement it, we can replace the MPI_MAXLOC 211883df288dSJunchao Zhang with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect. 21195b0d146aSStefano Zampini We use MPI_MAXLOC only to have a deterministic output from this routine if 21205b0d146aSStefano Zampini the root condition is not meet. 21215b0d146aSStefano Zampini */ 21225b0d146aSStefano Zampini op = MPI_MAXLOC; 21235b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21245b0d146aSStefano Zampini /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */ 21259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin)); 212683df288dSJunchao Zhang if (iswin) op = MPI_REPLACE; 21275b0d146aSStefano Zampini #endif 21285b0d146aSStefano Zampini 21299566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 21309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA)); 213154729392SStefano Zampini for (i = 0; i < maxleaf - minleaf + 1; i++) { 213254729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 213354729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 213454729392SStefano Zampini } 213554729392SStefano Zampini if (localPointsA) { 213654729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 213754729392SStefano Zampini if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue; 213854729392SStefano Zampini reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i]; 213954729392SStefano Zampini } 214054729392SStefano Zampini } else { 214154729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 214254729392SStefano Zampini if (i > maxleaf || i < minleaf) continue; 214354729392SStefano Zampini reorderedRemotePointsA[i - minleaf] = remotePointsA[i]; 214454729392SStefano Zampini } 214554729392SStefano Zampini } 214654729392SStefano Zampini 21479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &localPointsBA)); 21489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &remotePointsBA)); 214954729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 215054729392SStefano Zampini remotePointsBA[i].rank = -1; 215154729392SStefano Zampini remotePointsBA[i].index = -1; 215254729392SStefano Zampini } 215354729392SStefano Zampini 21548e3a54c0SPierre Jolivet PetscCall(PetscSFReduceBegin(sfB, MPIU_2INT, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 21558e3a54c0SPierre Jolivet PetscCall(PetscSFReduceEnd(sfB, MPIU_2INT, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 21569566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 215754729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numRootsB; i++) { 215854729392SStefano Zampini if (remotePointsBA[i].rank == -1) continue; 215954729392SStefano Zampini remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank; 216054729392SStefano Zampini remotePointsBA[numLeavesBA].index = remotePointsBA[i].index; 216154729392SStefano Zampini localPointsBA[numLeavesBA] = i; 216254729392SStefano Zampini numLeavesBA++; 216354729392SStefano Zampini } 21649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 21659566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 21669566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 21673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 216804c0ada0SJunchao Zhang } 216904c0ada0SJunchao Zhang 21701c6ba672SJunchao Zhang /* 2171cab54364SBarry Smith PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF` 21721c6ba672SJunchao Zhang 21732fe279fdSBarry Smith Input Parameter: 2174cab54364SBarry Smith . sf - The global `PetscSF` 21751c6ba672SJunchao Zhang 21762fe279fdSBarry Smith Output Parameter: 2177cab54364SBarry Smith . out - The local `PetscSF` 2178cab54364SBarry Smith 2179cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()` 21801c6ba672SJunchao Zhang */ 2181d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out) 2182d71ae5a4SJacob Faibussowitsch { 21831c6ba672SJunchao Zhang MPI_Comm comm; 21841c6ba672SJunchao Zhang PetscMPIInt myrank; 21851c6ba672SJunchao Zhang const PetscInt *ilocal; 21861c6ba672SJunchao Zhang const PetscSFNode *iremote; 21871c6ba672SJunchao Zhang PetscInt i, j, nroots, nleaves, lnleaves, *lilocal; 21881c6ba672SJunchao Zhang PetscSFNode *liremote; 21891c6ba672SJunchao Zhang PetscSF lsf; 21901c6ba672SJunchao Zhang 21911c6ba672SJunchao Zhang PetscFunctionBegin; 21921c6ba672SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2193dbbe0bcdSBarry Smith if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out); 2194dbbe0bcdSBarry Smith else { 21951c6ba672SJunchao Zhang /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */ 21969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 21979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &myrank)); 21981c6ba672SJunchao Zhang 21991c6ba672SJunchao Zhang /* Find out local edges and build a local SF */ 22009566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 22019371c9d4SSatish Balay for (i = lnleaves = 0; i < nleaves; i++) { 22029371c9d4SSatish Balay if (iremote[i].rank == (PetscInt)myrank) lnleaves++; 22039371c9d4SSatish Balay } 22049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &lilocal)); 22059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &liremote)); 22061c6ba672SJunchao Zhang 22071c6ba672SJunchao Zhang for (i = j = 0; i < nleaves; i++) { 22081c6ba672SJunchao Zhang if (iremote[i].rank == (PetscInt)myrank) { 22091c6ba672SJunchao Zhang lilocal[j] = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */ 22101c6ba672SJunchao Zhang liremote[j].rank = 0; /* rank in PETSC_COMM_SELF */ 22111c6ba672SJunchao Zhang liremote[j].index = iremote[i].index; 22121c6ba672SJunchao Zhang j++; 22131c6ba672SJunchao Zhang } 22141c6ba672SJunchao Zhang } 22159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 22169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(lsf)); 22179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER)); 22189566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 22191c6ba672SJunchao Zhang *out = lsf; 22201c6ba672SJunchao Zhang } 22213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22221c6ba672SJunchao Zhang } 2223dd5b3ca6SJunchao Zhang 2224dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */ 2225d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata) 2226d71ae5a4SJacob Faibussowitsch { 2227eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 2228dd5b3ca6SJunchao Zhang 2229dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2230dd5b3ca6SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 22319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 22329566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22339566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 22349566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 2235dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata); 22369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2238dd5b3ca6SJunchao Zhang } 2239dd5b3ca6SJunchao Zhang 2240157edd7aSVaclav Hapla /*@ 2241cab54364SBarry Smith PetscSFConcatenate - concatenate multiple `PetscSF` into one 2242157edd7aSVaclav Hapla 2243157edd7aSVaclav Hapla Input Parameters: 2244157edd7aSVaclav Hapla + comm - the communicator 2245cab54364SBarry Smith . nsfs - the number of input `PetscSF` 2246cab54364SBarry Smith . sfs - the array of input `PetscSF` 22471f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled 224820662ed9SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or `NULL` for contiguous storage 2249157edd7aSVaclav Hapla 22502fe279fdSBarry Smith Output Parameter: 2251cab54364SBarry Smith . newsf - The resulting `PetscSF` 2252157edd7aSVaclav Hapla 22531f40158dSVaclav Hapla Level: advanced 2254157edd7aSVaclav Hapla 2255157edd7aSVaclav Hapla Notes: 225620662ed9SBarry Smith The communicator of all `PetscSF`s in `sfs` must be comm. 2257157edd7aSVaclav Hapla 225820662ed9SBarry Smith Leaves are always concatenated locally, keeping them ordered by the input `PetscSF` index and original local order. 225920662ed9SBarry Smith 226020662ed9SBarry Smith The offsets in `leafOffsets` are added to the original leaf indices. 226120662ed9SBarry Smith 226220662ed9SBarry Smith If all input SFs use contiguous leaf storage (`ilocal` = `NULL`), `leafOffsets` can be passed as `NULL` as well. 226320662ed9SBarry Smith In this case, `NULL` is also passed as `ilocal` to the resulting `PetscSF`. 226420662ed9SBarry Smith 226520662ed9SBarry Smith If any input `PetscSF` has non-null `ilocal`, `leafOffsets` is needed to distinguish leaves from different input `PetscSF`s. 2266157edd7aSVaclav Hapla In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs). 2267157edd7aSVaclav Hapla 226820662ed9SBarry Smith All root modes retain the essential connectivity condition. 226920662ed9SBarry Smith If two leaves of the same input `PetscSF` are connected (sharing the same root), they are also connected in the output `PetscSF`. 227020662ed9SBarry Smith Parameter `rootMode` controls how the input root spaces are combined. 227120662ed9SBarry Smith For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input `PetscSF` (checked in debug mode) 227220662ed9SBarry Smith and is also the same in the output `PetscSF`. 22731f40158dSVaclav Hapla For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined. 22741f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally; 227520662ed9SBarry Smith roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input `PetscSF` and original local index, and renumbered contiguously. 22761f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally; 22771593df67SStefano Zampini roots of sfs[0], sfs[1], sfs[2], ... are joined globally, ordered by input `PetscSF` index and original global index, and renumbered contiguously; 22781f40158dSVaclav Hapla the original root ranks are ignored. 22791f40158dSVaclav Hapla For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, 228020662ed9SBarry Smith the output `PetscSF`'s root layout is such that the local number of roots is a sum of the input `PetscSF`'s local numbers of roots on each rank 228120662ed9SBarry Smith to keep the load balancing. 228220662ed9SBarry Smith However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, roots can move to different ranks. 22831f40158dSVaclav Hapla 22841f40158dSVaclav Hapla Example: 22851f40158dSVaclav Hapla We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running 228620662ed9SBarry Smith .vb 228720662ed9SBarry Smith make -C $PETSC_DIR/src/vec/is/sf/tests ex18 228820662ed9SBarry Smith for m in {local,global,shared}; do 228920662ed9SBarry Smith mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view 229020662ed9SBarry Smith done 229120662ed9SBarry Smith .ve 229220662ed9SBarry Smith we generate two identical `PetscSF`s sf_0 and sf_1, 229320662ed9SBarry Smith .vb 229420662ed9SBarry Smith PetscSF Object: sf_0 2 MPI processes 229520662ed9SBarry Smith type: basic 229620662ed9SBarry Smith rank #leaves #roots 229720662ed9SBarry Smith [ 0] 4 2 229820662ed9SBarry Smith [ 1] 4 2 229920662ed9SBarry Smith leaves roots roots in global numbering 230020662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 230120662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 230220662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 230320662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 230420662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 230520662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 230620662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 230720662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 230820662ed9SBarry Smith .ve 2309e33f79d8SJacob Faibussowitsch and pass them to `PetscSFConcatenate()` along with different choices of `rootMode`, yielding different result_sf\: 231020662ed9SBarry Smith .vb 231120662ed9SBarry Smith rootMode = local: 231220662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 231320662ed9SBarry Smith type: basic 231420662ed9SBarry Smith rank #leaves #roots 231520662ed9SBarry Smith [ 0] 8 4 231620662ed9SBarry Smith [ 1] 8 4 231720662ed9SBarry Smith leaves roots roots in global numbering 231820662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 231920662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 232020662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 4 232120662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 5 232220662ed9SBarry Smith ( 0, 4) <- ( 0, 2) = 2 232320662ed9SBarry Smith ( 0, 5) <- ( 0, 3) = 3 232420662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 232520662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 232620662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 232720662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 232820662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 4 232920662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 5 233020662ed9SBarry Smith ( 1, 4) <- ( 0, 2) = 2 233120662ed9SBarry Smith ( 1, 5) <- ( 0, 3) = 3 233220662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 233320662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 233420662ed9SBarry Smith 233520662ed9SBarry Smith rootMode = global: 233620662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 233720662ed9SBarry Smith type: basic 233820662ed9SBarry Smith rank #leaves #roots 233920662ed9SBarry Smith [ 0] 8 4 234020662ed9SBarry Smith [ 1] 8 4 234120662ed9SBarry Smith leaves roots roots in global numbering 234220662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 234320662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 234420662ed9SBarry Smith ( 0, 2) <- ( 0, 2) = 2 234520662ed9SBarry Smith ( 0, 3) <- ( 0, 3) = 3 234620662ed9SBarry Smith ( 0, 4) <- ( 1, 0) = 4 234720662ed9SBarry Smith ( 0, 5) <- ( 1, 1) = 5 234820662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 234920662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 235020662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 235120662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 235220662ed9SBarry Smith ( 1, 2) <- ( 0, 2) = 2 235320662ed9SBarry Smith ( 1, 3) <- ( 0, 3) = 3 235420662ed9SBarry Smith ( 1, 4) <- ( 1, 0) = 4 235520662ed9SBarry Smith ( 1, 5) <- ( 1, 1) = 5 235620662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 235720662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 235820662ed9SBarry Smith 235920662ed9SBarry Smith rootMode = shared: 236020662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 236120662ed9SBarry Smith type: basic 236220662ed9SBarry Smith rank #leaves #roots 236320662ed9SBarry Smith [ 0] 8 2 236420662ed9SBarry Smith [ 1] 8 2 236520662ed9SBarry Smith leaves roots roots in global numbering 236620662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 236720662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 236820662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 236920662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 237020662ed9SBarry Smith ( 0, 4) <- ( 0, 0) = 0 237120662ed9SBarry Smith ( 0, 5) <- ( 0, 1) = 1 237220662ed9SBarry Smith ( 0, 6) <- ( 1, 0) = 2 237320662ed9SBarry Smith ( 0, 7) <- ( 1, 1) = 3 237420662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 237520662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 237620662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 237720662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 237820662ed9SBarry Smith ( 1, 4) <- ( 0, 0) = 0 237920662ed9SBarry Smith ( 1, 5) <- ( 0, 1) = 1 238020662ed9SBarry Smith ( 1, 6) <- ( 1, 0) = 2 238120662ed9SBarry Smith ( 1, 7) <- ( 1, 1) = 3 238220662ed9SBarry Smith .ve 23831f40158dSVaclav Hapla 23841f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode` 2385157edd7aSVaclav Hapla @*/ 23861f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf) 2387d71ae5a4SJacob Faibussowitsch { 2388157edd7aSVaclav Hapla PetscInt i, s, nLeaves, nRoots; 2389157edd7aSVaclav Hapla PetscInt *leafArrayOffsets; 2390157edd7aSVaclav Hapla PetscInt *ilocal_new; 2391157edd7aSVaclav Hapla PetscSFNode *iremote_new; 2392157edd7aSVaclav Hapla PetscBool all_ilocal_null = PETSC_FALSE; 23931f40158dSVaclav Hapla PetscLayout glayout = NULL; 23941f40158dSVaclav Hapla PetscInt *gremote = NULL; 23951f40158dSVaclav Hapla PetscMPIInt rank, size; 2396157edd7aSVaclav Hapla 2397157edd7aSVaclav Hapla PetscFunctionBegin; 239812f479c1SVaclav Hapla if (PetscDefined(USE_DEBUG)) { 2399157edd7aSVaclav Hapla PetscSF dummy; /* just to have a PetscObject on comm for input validation */ 2400157edd7aSVaclav Hapla 24019566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &dummy)); 2402157edd7aSVaclav Hapla PetscValidLogicalCollectiveInt(dummy, nsfs, 2); 24034f572ea9SToby Isaac PetscAssertPointer(sfs, 3); 2404157edd7aSVaclav Hapla for (i = 0; i < nsfs; i++) { 2405157edd7aSVaclav Hapla PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3); 2406157edd7aSVaclav Hapla PetscCheckSameComm(dummy, 1, sfs[i], 3); 2407157edd7aSVaclav Hapla } 24081f40158dSVaclav Hapla PetscValidLogicalCollectiveEnum(dummy, rootMode, 4); 24094f572ea9SToby Isaac if (leafOffsets) PetscAssertPointer(leafOffsets, 5); 24104f572ea9SToby Isaac PetscAssertPointer(newsf, 6); 24119566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dummy)); 2412157edd7aSVaclav Hapla } 2413157edd7aSVaclav Hapla if (!nsfs) { 24149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 24159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 24163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2417157edd7aSVaclav Hapla } 24189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 24191f40158dSVaclav Hapla PetscCallMPI(MPI_Comm_size(comm, &size)); 2420157edd7aSVaclav Hapla 24211f40158dSVaclav Hapla /* Calculate leaf array offsets */ 24229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets)); 2423157edd7aSVaclav Hapla leafArrayOffsets[0] = 0; 2424157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2425157edd7aSVaclav Hapla PetscInt nl; 2426157edd7aSVaclav Hapla 24279566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL)); 2428157edd7aSVaclav Hapla leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl; 2429157edd7aSVaclav Hapla } 2430157edd7aSVaclav Hapla nLeaves = leafArrayOffsets[nsfs]; 2431157edd7aSVaclav Hapla 24321f40158dSVaclav Hapla /* Calculate number of roots */ 24331f40158dSVaclav Hapla switch (rootMode) { 24341f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_SHARED: { 24351f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL)); 24361f40158dSVaclav Hapla if (PetscDefined(USE_DEBUG)) { 24371f40158dSVaclav Hapla for (s = 1; s < nsfs; s++) { 24381f40158dSVaclav Hapla PetscInt nr; 24391f40158dSVaclav Hapla 24401f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 24411f40158dSVaclav Hapla PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots); 24421f40158dSVaclav Hapla } 24431f40158dSVaclav Hapla } 24441f40158dSVaclav Hapla } break; 24451f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: { 24461f40158dSVaclav Hapla /* Calculate also global layout in this case */ 24471f40158dSVaclav Hapla PetscInt *nls; 24481f40158dSVaclav Hapla PetscLayout *lts; 24491f40158dSVaclav Hapla PetscInt **inds; 24501f40158dSVaclav Hapla PetscInt j; 24511f40158dSVaclav Hapla PetscInt rootOffset = 0; 24521f40158dSVaclav Hapla 24531f40158dSVaclav Hapla PetscCall(PetscCalloc3(nsfs, <s, nsfs, &nls, nsfs, &inds)); 24541f40158dSVaclav Hapla PetscCall(PetscLayoutCreate(comm, &glayout)); 24551f40158dSVaclav Hapla glayout->bs = 1; 24561f40158dSVaclav Hapla glayout->n = 0; 24571f40158dSVaclav Hapla glayout->N = 0; 24581f40158dSVaclav Hapla for (s = 0; s < nsfs; s++) { 24591f40158dSVaclav Hapla PetscCall(PetscSFGetGraphLayout(sfs[s], <s[s], &nls[s], NULL, &inds[s])); 24601f40158dSVaclav Hapla glayout->n += lts[s]->n; 24611f40158dSVaclav Hapla glayout->N += lts[s]->N; 24621f40158dSVaclav Hapla } 24631f40158dSVaclav Hapla PetscCall(PetscLayoutSetUp(glayout)); 24641f40158dSVaclav Hapla PetscCall(PetscMalloc1(nLeaves, &gremote)); 24651f40158dSVaclav Hapla for (s = 0, j = 0; s < nsfs; s++) { 24661f40158dSVaclav Hapla for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset; 24671f40158dSVaclav Hapla rootOffset += lts[s]->N; 24681f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(<s[s])); 24691f40158dSVaclav Hapla PetscCall(PetscFree(inds[s])); 24701f40158dSVaclav Hapla } 24711f40158dSVaclav Hapla PetscCall(PetscFree3(lts, nls, inds)); 24721f40158dSVaclav Hapla nRoots = glayout->N; 24731f40158dSVaclav Hapla } break; 24741f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_LOCAL: 24751f40158dSVaclav Hapla /* nRoots calculated later in this case */ 24761f40158dSVaclav Hapla break; 24771f40158dSVaclav Hapla default: 24781f40158dSVaclav Hapla SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode); 24791f40158dSVaclav Hapla } 24801f40158dSVaclav Hapla 2481157edd7aSVaclav Hapla if (!leafOffsets) { 2482157edd7aSVaclav Hapla all_ilocal_null = PETSC_TRUE; 2483157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2484157edd7aSVaclav Hapla const PetscInt *ilocal; 2485157edd7aSVaclav Hapla 24869566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL)); 2487157edd7aSVaclav Hapla if (ilocal) { 2488157edd7aSVaclav Hapla all_ilocal_null = PETSC_FALSE; 2489157edd7aSVaclav Hapla break; 2490157edd7aSVaclav Hapla } 2491157edd7aSVaclav Hapla } 2492157edd7aSVaclav Hapla PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL"); 2493157edd7aSVaclav Hapla } 2494157edd7aSVaclav Hapla 2495157edd7aSVaclav Hapla /* Renumber and concatenate local leaves */ 2496157edd7aSVaclav Hapla ilocal_new = NULL; 2497157edd7aSVaclav Hapla if (!all_ilocal_null) { 24989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &ilocal_new)); 2499157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1; 2500157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2501157edd7aSVaclav Hapla const PetscInt *ilocal; 25028e3a54c0SPierre Jolivet PetscInt *ilocal_l = PetscSafePointerPlusOffset(ilocal_new, leafArrayOffsets[s]); 2503157edd7aSVaclav Hapla PetscInt i, nleaves_l; 2504157edd7aSVaclav Hapla 25059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL)); 2506157edd7aSVaclav Hapla for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s]; 2507157edd7aSVaclav Hapla } 2508157edd7aSVaclav Hapla } 2509157edd7aSVaclav Hapla 2510157edd7aSVaclav Hapla /* Renumber and concatenate remote roots */ 25111f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) { 25121f40158dSVaclav Hapla PetscInt rootOffset = 0; 25131f40158dSVaclav Hapla 25149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &iremote_new)); 2515157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) { 2516157edd7aSVaclav Hapla iremote_new[i].rank = -1; 2517157edd7aSVaclav Hapla iremote_new[i].index = -1; 2518157edd7aSVaclav Hapla } 2519157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2520157edd7aSVaclav Hapla PetscInt i, nl, nr; 2521157edd7aSVaclav Hapla PetscSF tmp_sf; 2522157edd7aSVaclav Hapla const PetscSFNode *iremote; 2523157edd7aSVaclav Hapla PetscSFNode *tmp_rootdata; 25248e3a54c0SPierre Jolivet PetscSFNode *tmp_leafdata = PetscSafePointerPlusOffset(iremote_new, leafArrayOffsets[s]); 2525157edd7aSVaclav Hapla 25269566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote)); 25279566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &tmp_sf)); 2528157edd7aSVaclav Hapla /* create helper SF with contiguous leaves */ 25299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 25309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(tmp_sf)); 25319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nr, &tmp_rootdata)); 25321f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { 2533157edd7aSVaclav Hapla for (i = 0; i < nr; i++) { 25341f40158dSVaclav Hapla tmp_rootdata[i].index = i + rootOffset; 2535157edd7aSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 2536157edd7aSVaclav Hapla } 25371f40158dSVaclav Hapla rootOffset += nr; 25381f40158dSVaclav Hapla } else { 25391f40158dSVaclav Hapla for (i = 0; i < nr; i++) { 25401f40158dSVaclav Hapla tmp_rootdata[i].index = i; 25411f40158dSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 25421f40158dSVaclav Hapla } 25431f40158dSVaclav Hapla } 25449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 25459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 25469566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tmp_sf)); 25479566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp_rootdata)); 2548157edd7aSVaclav Hapla } 2549aa624791SPierre Jolivet if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) nRoots = rootOffset; // else nRoots already calculated above 2550157edd7aSVaclav Hapla 2551157edd7aSVaclav Hapla /* Build the new SF */ 25529566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 25539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER)); 25541f40158dSVaclav Hapla } else { 25551f40158dSVaclav Hapla /* Build the new SF */ 25561f40158dSVaclav Hapla PetscCall(PetscSFCreate(comm, newsf)); 25571f40158dSVaclav Hapla PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote)); 25581f40158dSVaclav Hapla } 25599566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(*newsf)); 25601f40158dSVaclav Hapla PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view")); 25611f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(&glayout)); 25621f40158dSVaclav Hapla PetscCall(PetscFree(gremote)); 25639566063dSJacob Faibussowitsch PetscCall(PetscFree(leafArrayOffsets)); 25643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2565157edd7aSVaclav Hapla } 2566