1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h> 353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h> 4eec179cfSJacob Faibussowitsch #include <petsc/private/hashmapi.h> 595fce210SBarry Smith 67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 77fd2d3dbSJunchao Zhang #include <cuda_runtime.h> 8715b587bSJunchao Zhang #include <petscdevice_cuda.h> 97fd2d3dbSJunchao Zhang #endif 107fd2d3dbSJunchao Zhang 117fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP) 127fd2d3dbSJunchao Zhang #include <hip/hip_runtime.h> 137fd2d3dbSJunchao Zhang #endif 147fd2d3dbSJunchao Zhang 152abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER) 164bf303faSJacob Faibussowitsch extern void PetscSFCheckGraphSet(PetscSF, int); 172abc8c78SJacob Faibussowitsch #else 1895fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 19a8f51744SPierre Jolivet #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME) 2095fce210SBarry Smith #else 219371c9d4SSatish Balay #define PetscSFCheckGraphSet(sf, arg) \ 229371c9d4SSatish Balay do { \ 239371c9d4SSatish Balay } while (0) 2495fce210SBarry Smith #endif 252abc8c78SJacob Faibussowitsch #endif 2695fce210SBarry Smith 274c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[] = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL}; 281f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL}; 2995fce210SBarry Smith 308af6ec1cSBarry Smith /*@ 3195fce210SBarry Smith PetscSFCreate - create a star forest communication context 3295fce210SBarry Smith 33d083f849SBarry Smith Collective 3495fce210SBarry Smith 354165533cSJose E. Roman Input Parameter: 3695fce210SBarry Smith . comm - communicator on which the star forest will operate 3795fce210SBarry Smith 384165533cSJose E. Roman Output Parameter: 3995fce210SBarry Smith . sf - new star forest context 4095fce210SBarry Smith 4120662ed9SBarry Smith Options Database Key: 426677b1c1SJunchao Zhang + -sf_type basic - Use MPI persistent Isend/Irecv for communication (Default) 436677b1c1SJunchao Zhang . -sf_type window - Use MPI-3 one-sided window for communication 446677b1c1SJunchao Zhang . -sf_type neighbor - Use MPI-3 neighborhood collectives for communication 456677b1c1SJunchao Zhang - -sf_neighbor_persistent <bool> - If true, use MPI-4 persistent neighborhood collectives for communication (used along with -sf_type neighbor) 46dd5b3ca6SJunchao Zhang 4795fce210SBarry Smith Level: intermediate 4895fce210SBarry Smith 49cab54364SBarry Smith Note: 50cab54364SBarry Smith When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`, 51cab54364SBarry Smith `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special 5220662ed9SBarry Smith `SF`s are optimized and they have better performance than the general `SF`s. 53dd5b3ca6SJunchao Zhang 5438b5cf2dSJacob Faibussowitsch .seealso: `PetscSF`, `PetscSFSetType`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()` 5595fce210SBarry Smith @*/ 56d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf) 57d71ae5a4SJacob Faibussowitsch { 5895fce210SBarry Smith PetscSF b; 5995fce210SBarry Smith 6095fce210SBarry Smith PetscFunctionBegin; 614f572ea9SToby Isaac PetscAssertPointer(sf, 2); 629566063dSJacob Faibussowitsch PetscCall(PetscSFInitializePackage()); 6395fce210SBarry Smith 649566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView)); 6595fce210SBarry Smith 6695fce210SBarry Smith b->nroots = -1; 6795fce210SBarry Smith b->nleaves = -1; 6829046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 6929046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 7095fce210SBarry Smith b->nranks = -1; 7195fce210SBarry Smith b->rankorder = PETSC_TRUE; 7295fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 7395fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 7495fce210SBarry Smith b->graphset = PETSC_FALSE; 7520c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 7620c24465SJunchao Zhang b->use_gpu_aware_mpi = use_gpu_aware_mpi; 7720c24465SJunchao Zhang b->use_stream_aware_mpi = PETSC_FALSE; 7871438e86SJunchao Zhang b->unknown_input_stream = PETSC_FALSE; 7927f636e8SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/ 8020c24465SJunchao Zhang b->backend = PETSCSF_BACKEND_KOKKOS; 8127f636e8SJunchao Zhang #elif defined(PETSC_HAVE_CUDA) 8227f636e8SJunchao Zhang b->backend = PETSCSF_BACKEND_CUDA; 8359af0bd3SScott Kruger #elif defined(PETSC_HAVE_HIP) 8459af0bd3SScott Kruger b->backend = PETSCSF_BACKEND_HIP; 8520c24465SJunchao Zhang #endif 8671438e86SJunchao Zhang 8771438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 8871438e86SJunchao Zhang b->use_nvshmem = PETSC_FALSE; /* Default is not to try NVSHMEM */ 8971438e86SJunchao Zhang b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */ 909566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL)); 919566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL)); 9271438e86SJunchao Zhang #endif 9320c24465SJunchao Zhang #endif 9460c22052SBarry Smith b->vscat.from_n = -1; 9560c22052SBarry Smith b->vscat.to_n = -1; 9660c22052SBarry Smith b->vscat.unit = MPIU_SCALAR; 9795fce210SBarry Smith *sf = b; 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9995fce210SBarry Smith } 10095fce210SBarry Smith 10129046d53SLisandro Dalcin /*@ 10295fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 10395fce210SBarry Smith 10495fce210SBarry Smith Collective 10595fce210SBarry Smith 1064165533cSJose E. Roman Input Parameter: 10795fce210SBarry Smith . sf - star forest 10895fce210SBarry Smith 10995fce210SBarry Smith Level: advanced 11095fce210SBarry Smith 111cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()` 11295fce210SBarry Smith @*/ 113d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf) 114d71ae5a4SJacob Faibussowitsch { 11595fce210SBarry Smith PetscFunctionBegin; 11695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 117dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Reset); 1180dd791a8SStefano Zampini PetscCall(PetscSFDestroy(&sf->rankssf)); 1190dd791a8SStefano Zampini 12029046d53SLisandro Dalcin sf->nroots = -1; 12129046d53SLisandro Dalcin sf->nleaves = -1; 12229046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 12329046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 12495fce210SBarry Smith sf->mine = NULL; 12595fce210SBarry Smith sf->remote = NULL; 12629046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 1279566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->mine_alloc)); 1289566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->remote_alloc)); 12921c688dcSJed Brown sf->nranks = -1; 1309566063dSJacob Faibussowitsch PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote)); 13129046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 1329566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degree)); 1339566063dSJacob Faibussowitsch if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup)); 1349566063dSJacob Faibussowitsch if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup)); 1350dd791a8SStefano Zampini 136013b3241SStefano Zampini if (sf->multi) sf->multi->multi = NULL; 1379566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf->multi)); 1380dd791a8SStefano Zampini 1399566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&sf->map)); 14071438e86SJunchao Zhang 14171438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 1429566063dSJacob Faibussowitsch for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i])); 14371438e86SJunchao Zhang #endif 14471438e86SJunchao Zhang 14595fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 1463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14795fce210SBarry Smith } 14895fce210SBarry Smith 149cc4c1da9SBarry Smith /*@ 150cab54364SBarry Smith PetscSFSetType - Set the `PetscSF` communication implementation 15195fce210SBarry Smith 152c3339decSBarry Smith Collective 15395fce210SBarry Smith 15495fce210SBarry Smith Input Parameters: 155cab54364SBarry Smith + sf - the `PetscSF` context 15695fce210SBarry Smith - type - a known method 157cab54364SBarry Smith .vb 158cab54364SBarry Smith PETSCSFWINDOW - MPI-2/3 one-sided 159cab54364SBarry Smith PETSCSFBASIC - basic implementation using MPI-1 two-sided 160cab54364SBarry Smith .ve 16195fce210SBarry Smith 16295fce210SBarry Smith Options Database Key: 16320662ed9SBarry Smith . -sf_type <type> - Sets the method; for example `basic` or `window` use -help for a list of available methods 164cab54364SBarry Smith 165cab54364SBarry Smith Level: intermediate 16695fce210SBarry Smith 16795fce210SBarry Smith Notes: 16820662ed9SBarry Smith See `PetscSFType` for possible values 16995fce210SBarry Smith 17020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()` 17195fce210SBarry Smith @*/ 172d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type) 173d71ae5a4SJacob Faibussowitsch { 17495fce210SBarry Smith PetscBool match; 1755f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(PetscSF); 17695fce210SBarry Smith 17795fce210SBarry Smith PetscFunctionBegin; 17895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 1794f572ea9SToby Isaac PetscAssertPointer(type, 2); 18095fce210SBarry Smith 1819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match)); 1823ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 18395fce210SBarry Smith 1849566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSFList, type, &r)); 1856adde796SStefano Zampini PetscCheck(r, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type); 18629046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 187dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Destroy); 1889566063dSJacob Faibussowitsch PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops))); 1899566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type)); 1909566063dSJacob Faibussowitsch PetscCall((*r)(sf)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19295fce210SBarry Smith } 19395fce210SBarry Smith 194cc4c1da9SBarry Smith /*@ 195cab54364SBarry Smith PetscSFGetType - Get the `PetscSF` communication implementation 19629046d53SLisandro Dalcin 19729046d53SLisandro Dalcin Not Collective 19829046d53SLisandro Dalcin 19929046d53SLisandro Dalcin Input Parameter: 200cab54364SBarry Smith . sf - the `PetscSF` context 20129046d53SLisandro Dalcin 20229046d53SLisandro Dalcin Output Parameter: 203cab54364SBarry Smith . type - the `PetscSF` type name 20429046d53SLisandro Dalcin 20529046d53SLisandro Dalcin Level: intermediate 20629046d53SLisandro Dalcin 20720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()` 20829046d53SLisandro Dalcin @*/ 209d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 210d71ae5a4SJacob Faibussowitsch { 21129046d53SLisandro Dalcin PetscFunctionBegin; 21229046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2134f572ea9SToby Isaac PetscAssertPointer(type, 2); 21429046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 2153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21629046d53SLisandro Dalcin } 21729046d53SLisandro Dalcin 2181fb7b255SJunchao Zhang /*@C 21920662ed9SBarry Smith PetscSFDestroy - destroy a star forest 22095fce210SBarry Smith 22195fce210SBarry Smith Collective 22295fce210SBarry Smith 2234165533cSJose E. Roman Input Parameter: 22495fce210SBarry Smith . sf - address of star forest 22595fce210SBarry Smith 22695fce210SBarry Smith Level: intermediate 22795fce210SBarry Smith 22820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()` 22995fce210SBarry Smith @*/ 230d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf) 231d71ae5a4SJacob Faibussowitsch { 23295fce210SBarry Smith PetscFunctionBegin; 2333ba16761SJacob Faibussowitsch if (!*sf) PetscFunctionReturn(PETSC_SUCCESS); 234f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*sf, PETSCSF_CLASSID, 1); 235f4f49eeaSPierre Jolivet if (--((PetscObject)*sf)->refct > 0) { 2369371c9d4SSatish Balay *sf = NULL; 2373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2389371c9d4SSatish Balay } 2399566063dSJacob Faibussowitsch PetscCall(PetscSFReset(*sf)); 240f4f49eeaSPierre Jolivet PetscTryTypeMethod(*sf, Destroy); 2419566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf)); 2429566063dSJacob Faibussowitsch if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit)); 243c02794c0SJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 244715b587bSJunchao Zhang if ((*sf)->use_stream_aware_mpi) { 245715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_free(&(*sf)->mpi_stream)); 246715b587bSJunchao Zhang PetscCallMPI(MPI_Comm_free(&(*sf)->stream_comm)); 247715b587bSJunchao Zhang } 248715b587bSJunchao Zhang #endif 2499566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sf)); 2503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25195fce210SBarry Smith } 25295fce210SBarry Smith 253d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf) 254d71ae5a4SJacob Faibussowitsch { 255c4e6a40aSLawrence Mitchell PetscInt i, nleaves; 256c4e6a40aSLawrence Mitchell PetscMPIInt size; 257c4e6a40aSLawrence Mitchell const PetscInt *ilocal; 258c4e6a40aSLawrence Mitchell const PetscSFNode *iremote; 259c4e6a40aSLawrence Mitchell 260c4e6a40aSLawrence Mitchell PetscFunctionBegin; 2613ba16761SJacob Faibussowitsch if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(PETSC_SUCCESS); 2629566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote)); 2639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 264c4e6a40aSLawrence Mitchell for (i = 0; i < nleaves; i++) { 265c4e6a40aSLawrence Mitchell const PetscInt rank = iremote[i].rank; 266c4e6a40aSLawrence Mitchell const PetscInt remote = iremote[i].index; 267c4e6a40aSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 268c9cc58a2SBarry Smith PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size); 26908401ef6SPierre Jolivet PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i); 27008401ef6SPierre Jolivet PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i); 271c4e6a40aSLawrence Mitchell } 2723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 273c4e6a40aSLawrence Mitchell } 274c4e6a40aSLawrence Mitchell 27595fce210SBarry Smith /*@ 27620662ed9SBarry Smith PetscSFSetUp - set up communication structures for a `PetscSF`, after this is done it may be used to perform communication 27795fce210SBarry Smith 27895fce210SBarry Smith Collective 27995fce210SBarry Smith 2804165533cSJose E. Roman Input Parameter: 28195fce210SBarry Smith . sf - star forest communication object 28295fce210SBarry Smith 28395fce210SBarry Smith Level: beginner 28495fce210SBarry Smith 28520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()` 28695fce210SBarry Smith @*/ 287d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf) 288d71ae5a4SJacob Faibussowitsch { 28995fce210SBarry Smith PetscFunctionBegin; 29029046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 29129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 2923ba16761SJacob Faibussowitsch if (sf->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 2939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0)); 2949566063dSJacob Faibussowitsch PetscCall(PetscSFCheckGraphValid_Private(sf)); 2959566063dSJacob Faibussowitsch if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */ 296dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetUp); 29720c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 29820c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_CUDA) { 29971438e86SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_CUDA; 30071438e86SJunchao Zhang sf->ops->Free = PetscSFFree_CUDA; 30120c24465SJunchao Zhang } 30220c24465SJunchao Zhang #endif 30359af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 30459af0bd3SScott Kruger if (sf->backend == PETSCSF_BACKEND_HIP) { 30559af0bd3SScott Kruger sf->ops->Malloc = PetscSFMalloc_HIP; 30659af0bd3SScott Kruger sf->ops->Free = PetscSFFree_HIP; 30759af0bd3SScott Kruger } 30859af0bd3SScott Kruger #endif 30920c24465SJunchao Zhang 31020c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 31120c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_KOKKOS) { 31220c24465SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_Kokkos; 31320c24465SJunchao Zhang sf->ops->Free = PetscSFFree_Kokkos; 31420c24465SJunchao Zhang } 31520c24465SJunchao Zhang #endif 3169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0)); 31795fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 3183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31995fce210SBarry Smith } 32095fce210SBarry Smith 3218af6ec1cSBarry Smith /*@ 322cab54364SBarry Smith PetscSFSetFromOptions - set `PetscSF` options using the options database 32395fce210SBarry Smith 32495fce210SBarry Smith Logically Collective 32595fce210SBarry Smith 3264165533cSJose E. Roman Input Parameter: 32795fce210SBarry Smith . sf - star forest 32895fce210SBarry Smith 32995fce210SBarry Smith Options Database Keys: 33020662ed9SBarry Smith + -sf_type - implementation type, see `PetscSFSetType()` 33151ccb202SJunchao Zhang . -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 33220662ed9SBarry Smith . -sf_use_default_stream - Assume callers of `PetscSF` computed the input root/leafdata with the default CUDA stream. `PetscSF` will also 33320662ed9SBarry Smith use the default stream to process data. Therefore, no stream synchronization is needed between `PetscSF` and its caller (default: true). 33420662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33520662ed9SBarry Smith . -sf_use_stream_aware_mpi - Assume the underlying MPI is CUDA-stream aware and `PetscSF` won't sync streams for send/recv buffers passed to MPI (default: false). 33620662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33795fce210SBarry Smith 33838b5cf2dSJacob Faibussowitsch - -sf_backend cuda | hip | kokkos -Select the device backend SF uses. Currently `PetscSF` has these backends: cuda - hip and Kokkos. 33959af0bd3SScott Kruger On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices, 34020c24465SJunchao Zhang the only available is kokkos. 34120c24465SJunchao Zhang 34295fce210SBarry Smith Level: intermediate 343cab54364SBarry Smith 344cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()` 34595fce210SBarry Smith @*/ 346d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 347d71ae5a4SJacob Faibussowitsch { 34895fce210SBarry Smith PetscSFType deft; 34995fce210SBarry Smith char type[256]; 35095fce210SBarry Smith PetscBool flg; 35195fce210SBarry Smith 35295fce210SBarry Smith PetscFunctionBegin; 35395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 354d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)sf); 35595fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 3569566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg)); 3579566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, flg ? type : deft)); 3589566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL)); 3597fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 36020c24465SJunchao Zhang { 36120c24465SJunchao Zhang char backendstr[32] = {0}; 36259af0bd3SScott Kruger PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set; 36320c24465SJunchao Zhang /* Change the defaults set in PetscSFCreate() with command line options */ 364d5b43468SJose E. Roman PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL)); 3659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL)); 3669566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set)); 3679566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda)); 3689566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos)); 3699566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("hip", backendstr, &isHip)); 37059af0bd3SScott Kruger #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 37120c24465SJunchao Zhang if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA; 37220c24465SJunchao Zhang else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS; 37359af0bd3SScott Kruger else if (isHip) sf->backend = PETSCSF_BACKEND_HIP; 37428b400f6SJacob Faibussowitsch else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr); 37520c24465SJunchao Zhang #elif defined(PETSC_HAVE_KOKKOS) 37608401ef6SPierre Jolivet PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr); 37720c24465SJunchao Zhang #endif 378715b587bSJunchao Zhang 379715b587bSJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 380715b587bSJunchao Zhang if (sf->use_stream_aware_mpi) { 381715b587bSJunchao Zhang MPI_Info info; 382715b587bSJunchao Zhang 383715b587bSJunchao Zhang PetscCallMPI(MPI_Info_create(&info)); 384715b587bSJunchao Zhang PetscCallMPI(MPI_Info_set(info, "type", "cudaStream_t")); 385715b587bSJunchao Zhang PetscCallMPI(MPIX_Info_set_hex(info, "value", &PetscDefaultCudaStream, sizeof(PetscDefaultCudaStream))); 386715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_create(info, &sf->mpi_stream)); 387715b587bSJunchao Zhang PetscCallMPI(MPI_Info_free(&info)); 388715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_comm_create(PetscObjectComm((PetscObject)sf), sf->mpi_stream, &sf->stream_comm)); 389715b587bSJunchao Zhang } 390715b587bSJunchao Zhang #endif 39120c24465SJunchao Zhang } 392c2a741eeSJunchao Zhang #endif 393dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject); 394d0609cedSBarry Smith PetscOptionsEnd(); 3953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39695fce210SBarry Smith } 39795fce210SBarry Smith 39829046d53SLisandro Dalcin /*@ 39995fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 40095fce210SBarry Smith 40195fce210SBarry Smith Logically Collective 40295fce210SBarry Smith 4034165533cSJose E. Roman Input Parameters: 40495fce210SBarry Smith + sf - star forest 405cab54364SBarry Smith - flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic) 40695fce210SBarry Smith 40795fce210SBarry Smith Level: advanced 40895fce210SBarry Smith 40920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()` 41095fce210SBarry Smith @*/ 411d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg) 412d71ae5a4SJacob Faibussowitsch { 41395fce210SBarry Smith PetscFunctionBegin; 41495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 41595fce210SBarry Smith PetscValidLogicalCollectiveBool(sf, flg, 2); 41628b400f6SJacob Faibussowitsch PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 41795fce210SBarry Smith sf->rankorder = flg; 4183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41995fce210SBarry Smith } 42095fce210SBarry Smith 4218dbb0df6SBarry Smith /*@C 42295fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 42395fce210SBarry Smith 42495fce210SBarry Smith Collective 42595fce210SBarry Smith 4264165533cSJose E. Roman Input Parameters: 42795fce210SBarry Smith + sf - star forest 42895fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 42995fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 43020662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass `NULL` for contiguous storage (locations must be >= 0, enforced 431c4e6a40aSLawrence Mitchell during setup in debug mode) 43220662ed9SBarry Smith . localmode - copy mode for `ilocal` 433c4e6a40aSLawrence Mitchell . iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced 434c4e6a40aSLawrence Mitchell during setup in debug mode) 43520662ed9SBarry Smith - remotemode - copy mode for `iremote` 43695fce210SBarry Smith 43795fce210SBarry Smith Level: intermediate 43895fce210SBarry Smith 43995452b02SPatrick Sanan Notes: 44020662ed9SBarry Smith Leaf indices in `ilocal` must be unique, otherwise an error occurs. 44138ab3f8aSBarry Smith 44220662ed9SBarry Smith Input arrays `ilocal` and `iremote` follow the `PetscCopyMode` semantics. 44320662ed9SBarry Smith In particular, if `localmode` or `remotemode` is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`, 444db2b9530SVaclav Hapla PETSc might modify the respective array; 44520662ed9SBarry Smith if `PETSC_USE_POINTER`, the user must delete the array after `PetscSFDestroy()`. 446cab54364SBarry Smith Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed). 447db2b9530SVaclav Hapla 44838b5cf2dSJacob Faibussowitsch Fortran Notes: 44920662ed9SBarry Smith In Fortran you must use `PETSC_COPY_VALUES` for `localmode` and `remotemode`. 450c4e6a40aSLawrence Mitchell 45138b5cf2dSJacob Faibussowitsch Developer Notes: 452db2b9530SVaclav Hapla We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf. 45320662ed9SBarry Smith This also allows to compare leaf sets of two `PetscSF`s easily. 45472bf8598SVaclav Hapla 45520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 45695fce210SBarry Smith @*/ 457d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode) 458d71ae5a4SJacob Faibussowitsch { 459db2b9530SVaclav Hapla PetscBool unique, contiguous; 46095fce210SBarry Smith 46195fce210SBarry Smith PetscFunctionBegin; 46295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 4634f572ea9SToby Isaac if (nleaves > 0 && ilocal) PetscAssertPointer(ilocal, 4); 4644f572ea9SToby Isaac if (nleaves > 0) PetscAssertPointer(iremote, 6); 46508401ef6SPierre Jolivet PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots); 46608401ef6SPierre Jolivet PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves); 4678da24d32SBarry Smith /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast 4688da24d32SBarry Smith * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */ 4698da24d32SBarry Smith PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode); 4708da24d32SBarry Smith PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode); 47129046d53SLisandro Dalcin 4722a67d2daSStefano Zampini if (sf->nroots >= 0) { /* Reset only if graph already set */ 4739566063dSJacob Faibussowitsch PetscCall(PetscSFReset(sf)); 4742a67d2daSStefano Zampini } 4752a67d2daSStefano Zampini 4769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0)); 47729046d53SLisandro Dalcin 47895fce210SBarry Smith sf->nroots = nroots; 47995fce210SBarry Smith sf->nleaves = nleaves; 48029046d53SLisandro Dalcin 481db2b9530SVaclav Hapla if (localmode == PETSC_COPY_VALUES && ilocal) { 482db2b9530SVaclav Hapla PetscInt *tlocal = NULL; 483db2b9530SVaclav Hapla 4849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tlocal)); 4859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tlocal, ilocal, nleaves)); 486db2b9530SVaclav Hapla ilocal = tlocal; 487db2b9530SVaclav Hapla } 488db2b9530SVaclav Hapla if (remotemode == PETSC_COPY_VALUES) { 489db2b9530SVaclav Hapla PetscSFNode *tremote = NULL; 490db2b9530SVaclav Hapla 4919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tremote)); 4929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tremote, iremote, nleaves)); 493db2b9530SVaclav Hapla iremote = tremote; 494db2b9530SVaclav Hapla } 495db2b9530SVaclav Hapla 49629046d53SLisandro Dalcin if (nleaves && ilocal) { 497db2b9530SVaclav Hapla PetscSFNode work; 498db2b9530SVaclav Hapla 4999566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work)); 5009566063dSJacob Faibussowitsch PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique)); 501db2b9530SVaclav Hapla unique = PetscNot(unique); 502db2b9530SVaclav Hapla PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF"); 503db2b9530SVaclav Hapla sf->minleaf = ilocal[0]; 504db2b9530SVaclav Hapla sf->maxleaf = ilocal[nleaves - 1]; 505db2b9530SVaclav Hapla contiguous = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1); 50629046d53SLisandro Dalcin } else { 50729046d53SLisandro Dalcin sf->minleaf = 0; 50829046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 509db2b9530SVaclav Hapla unique = PETSC_TRUE; 510db2b9530SVaclav Hapla contiguous = PETSC_TRUE; 51129046d53SLisandro Dalcin } 51229046d53SLisandro Dalcin 513db2b9530SVaclav Hapla if (contiguous) { 514db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 515db2b9530SVaclav Hapla ilocal = NULL; 516db2b9530SVaclav Hapla } else { 5179566063dSJacob Faibussowitsch PetscCall(PetscFree(ilocal)); 518db2b9530SVaclav Hapla } 519db2b9530SVaclav Hapla } 520db2b9530SVaclav Hapla sf->mine = ilocal; 521db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 52229046d53SLisandro Dalcin sf->mine_alloc = NULL; 523db2b9530SVaclav Hapla } else { 524db2b9530SVaclav Hapla sf->mine_alloc = ilocal; 52595fce210SBarry Smith } 526db2b9530SVaclav Hapla sf->remote = iremote; 527db2b9530SVaclav Hapla if (remotemode == PETSC_USE_POINTER) { 52829046d53SLisandro Dalcin sf->remote_alloc = NULL; 529db2b9530SVaclav Hapla } else { 530db2b9530SVaclav Hapla sf->remote_alloc = iremote; 53195fce210SBarry Smith } 5329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0)); 53329046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 5343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53595fce210SBarry Smith } 53695fce210SBarry Smith 53729046d53SLisandro Dalcin /*@ 538cab54364SBarry Smith PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern 539dd5b3ca6SJunchao Zhang 540dd5b3ca6SJunchao Zhang Collective 541dd5b3ca6SJunchao Zhang 542dd5b3ca6SJunchao Zhang Input Parameters: 543cab54364SBarry Smith + sf - The `PetscSF` 544cab54364SBarry Smith . map - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`) 545cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL` 546cab54364SBarry Smith 547cab54364SBarry Smith Level: intermediate 548dd5b3ca6SJunchao Zhang 549dd5b3ca6SJunchao Zhang Notes: 55020662ed9SBarry Smith It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector `x` and its `PetscLayout` is `map`. 55120662ed9SBarry Smith `n` and `N` are the local and global sizes of `x` respectively. 552dd5b3ca6SJunchao Zhang 55320662ed9SBarry Smith With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to 55420662ed9SBarry Smith sequential vectors `y` on all MPI processes. 555dd5b3ca6SJunchao Zhang 55620662ed9SBarry Smith With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to a 55720662ed9SBarry Smith sequential vector `y` on rank 0. 558dd5b3ca6SJunchao Zhang 55920662ed9SBarry Smith In above cases, entries of `x` are roots and entries of `y` are leaves. 560dd5b3ca6SJunchao Zhang 56120662ed9SBarry Smith With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of `sf`'s communicator. The routine 562dd5b3ca6SJunchao Zhang creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i 563cab54364SBarry Smith of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does 564dd5b3ca6SJunchao Zhang not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data 565cab54364SBarry Smith items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines. 566dd5b3ca6SJunchao Zhang 567dd5b3ca6SJunchao Zhang In this case, roots and leaves are symmetric. 568dd5b3ca6SJunchao Zhang 569cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 570dd5b3ca6SJunchao Zhang @*/ 571d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern) 572d71ae5a4SJacob Faibussowitsch { 573dd5b3ca6SJunchao Zhang MPI_Comm comm; 574dd5b3ca6SJunchao Zhang PetscInt n, N, res[2]; 575dd5b3ca6SJunchao Zhang PetscMPIInt rank, size; 576dd5b3ca6SJunchao Zhang PetscSFType type; 577dd5b3ca6SJunchao Zhang 578dd5b3ca6SJunchao Zhang PetscFunctionBegin; 5792abc8c78SJacob Faibussowitsch PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 5804f572ea9SToby Isaac if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscAssertPointer(map, 2); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 5822c71b3e2SJacob Faibussowitsch PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern); 5839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 585dd5b3ca6SJunchao Zhang 586dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLTOALL) { 587dd5b3ca6SJunchao Zhang type = PETSCSFALLTOALL; 5889566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &sf->map)); 5899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(sf->map, size)); 5909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size)); 5919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(sf->map)); 592dd5b3ca6SJunchao Zhang } else { 5939566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetLocalSize(map, &n)); 5949566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(map, &N)); 595dd5b3ca6SJunchao Zhang res[0] = n; 596dd5b3ca6SJunchao Zhang res[1] = -n; 597dd5b3ca6SJunchao Zhang /* Check if n are same over all ranks so that we can optimize it */ 5981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm)); 599dd5b3ca6SJunchao Zhang if (res[0] == -res[1]) { /* same n */ 600dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER; 601dd5b3ca6SJunchao Zhang } else { 602dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV; 603dd5b3ca6SJunchao Zhang } 6049566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(map, &sf->map)); 605dd5b3ca6SJunchao Zhang } 6069566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, type)); 607dd5b3ca6SJunchao Zhang 608dd5b3ca6SJunchao Zhang sf->pattern = pattern; 609dd5b3ca6SJunchao Zhang sf->mine = NULL; /* Contiguous */ 610dd5b3ca6SJunchao Zhang 611dd5b3ca6SJunchao Zhang /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called. 612dd5b3ca6SJunchao Zhang Also set other easy stuff. 613dd5b3ca6SJunchao Zhang */ 614dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLGATHER) { 615dd5b3ca6SJunchao Zhang sf->nleaves = N; 616dd5b3ca6SJunchao Zhang sf->nroots = n; 617dd5b3ca6SJunchao Zhang sf->nranks = size; 618dd5b3ca6SJunchao Zhang sf->minleaf = 0; 619dd5b3ca6SJunchao Zhang sf->maxleaf = N - 1; 620dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_GATHER) { 621dd5b3ca6SJunchao Zhang sf->nleaves = rank ? 0 : N; 622dd5b3ca6SJunchao Zhang sf->nroots = n; 623dd5b3ca6SJunchao Zhang sf->nranks = rank ? 0 : size; 624dd5b3ca6SJunchao Zhang sf->minleaf = 0; 625dd5b3ca6SJunchao Zhang sf->maxleaf = rank ? -1 : N - 1; 626dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_ALLTOALL) { 627dd5b3ca6SJunchao Zhang sf->nleaves = size; 628dd5b3ca6SJunchao Zhang sf->nroots = size; 629dd5b3ca6SJunchao Zhang sf->nranks = size; 630dd5b3ca6SJunchao Zhang sf->minleaf = 0; 631dd5b3ca6SJunchao Zhang sf->maxleaf = size - 1; 632dd5b3ca6SJunchao Zhang } 633dd5b3ca6SJunchao Zhang sf->ndranks = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */ 634dd5b3ca6SJunchao Zhang sf->graphset = PETSC_TRUE; 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 636dd5b3ca6SJunchao Zhang } 637dd5b3ca6SJunchao Zhang 638dd5b3ca6SJunchao Zhang /*@ 639cab54364SBarry Smith PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map 64095fce210SBarry Smith 64195fce210SBarry Smith Collective 64295fce210SBarry Smith 6434165533cSJose E. Roman Input Parameter: 64495fce210SBarry Smith . sf - star forest to invert 64595fce210SBarry Smith 6464165533cSJose E. Roman Output Parameter: 64720662ed9SBarry Smith . isf - inverse of `sf` 6484165533cSJose E. Roman 64995fce210SBarry Smith Level: advanced 65095fce210SBarry Smith 65195fce210SBarry Smith Notes: 65295fce210SBarry Smith All roots must have degree 1. 65395fce210SBarry Smith 65495fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 65595fce210SBarry Smith 65620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetGraph()` 65795fce210SBarry Smith @*/ 658d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf) 659d71ae5a4SJacob Faibussowitsch { 66095fce210SBarry Smith PetscMPIInt rank; 66195fce210SBarry Smith PetscInt i, nroots, nleaves, maxlocal, count, *newilocal; 66295fce210SBarry Smith const PetscInt *ilocal; 66395fce210SBarry Smith PetscSFNode *roots, *leaves; 66495fce210SBarry Smith 66595fce210SBarry Smith PetscFunctionBegin; 66629046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 66729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 6684f572ea9SToby Isaac PetscAssertPointer(isf, 2); 66929046d53SLisandro Dalcin 6709566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL)); 67129046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 67229046d53SLisandro Dalcin 6739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 6749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves)); 675ae9aee6dSMatthew G. Knepley for (i = 0; i < maxlocal; i++) { 67695fce210SBarry Smith leaves[i].rank = rank; 67795fce210SBarry Smith leaves[i].index = i; 67895fce210SBarry Smith } 67995fce210SBarry Smith for (i = 0; i < nroots; i++) { 68095fce210SBarry Smith roots[i].rank = -1; 68195fce210SBarry Smith roots[i].index = -1; 68295fce210SBarry Smith } 6839566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 6849566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 68595fce210SBarry Smith 68695fce210SBarry Smith /* Check whether our leaves are sparse */ 6879371c9d4SSatish Balay for (i = 0, count = 0; i < nroots; i++) 6889371c9d4SSatish Balay if (roots[i].rank >= 0) count++; 68995fce210SBarry Smith if (count == nroots) newilocal = NULL; 6909371c9d4SSatish Balay else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal)); 69195fce210SBarry Smith for (i = 0, count = 0; i < nroots; i++) { 69295fce210SBarry Smith if (roots[i].rank >= 0) { 69395fce210SBarry Smith newilocal[count] = i; 69495fce210SBarry Smith roots[count].rank = roots[i].rank; 69595fce210SBarry Smith roots[count].index = roots[i].index; 69695fce210SBarry Smith count++; 69795fce210SBarry Smith } 69895fce210SBarry Smith } 69995fce210SBarry Smith } 70095fce210SBarry Smith 7019566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf)); 7029566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES)); 7039566063dSJacob Faibussowitsch PetscCall(PetscFree2(roots, leaves)); 7043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70595fce210SBarry Smith } 70695fce210SBarry Smith 70795fce210SBarry Smith /*@ 708cab54364SBarry Smith PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph 70995fce210SBarry Smith 71095fce210SBarry Smith Collective 71195fce210SBarry Smith 7124165533cSJose E. Roman Input Parameters: 71395fce210SBarry Smith + sf - communication object to duplicate 714cab54364SBarry Smith - opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`) 71595fce210SBarry Smith 7164165533cSJose E. Roman Output Parameter: 71795fce210SBarry Smith . newsf - new communication object 71895fce210SBarry Smith 71995fce210SBarry Smith Level: beginner 72095fce210SBarry Smith 72120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()` 72295fce210SBarry Smith @*/ 723d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf) 724d71ae5a4SJacob Faibussowitsch { 72529046d53SLisandro Dalcin PetscSFType type; 72697929ea7SJunchao Zhang MPI_Datatype dtype = MPIU_SCALAR; 72795fce210SBarry Smith 72895fce210SBarry Smith PetscFunctionBegin; 72929046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 73029046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf, opt, 2); 7314f572ea9SToby Isaac PetscAssertPointer(newsf, 3); 7329566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf)); 7339566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 7349566063dSJacob Faibussowitsch if (type) PetscCall(PetscSFSetType(*newsf, type)); 73535cb6cd3SPierre Jolivet (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag earlier since PetscSFSetGraph() below checks on this flag */ 73695fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 737dd5b3ca6SJunchao Zhang PetscSFCheckGraphSet(sf, 1); 738dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 73995fce210SBarry Smith PetscInt nroots, nleaves; 74095fce210SBarry Smith const PetscInt *ilocal; 74195fce210SBarry Smith const PetscSFNode *iremote; 7429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7439566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 744dd5b3ca6SJunchao Zhang } else { 7459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern)); 746dd5b3ca6SJunchao Zhang } 74795fce210SBarry Smith } 74897929ea7SJunchao Zhang /* Since oldtype is committed, so is newtype, according to MPI */ 7499566063dSJacob Faibussowitsch if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype)); 75097929ea7SJunchao Zhang (*newsf)->vscat.bs = sf->vscat.bs; 75197929ea7SJunchao Zhang (*newsf)->vscat.unit = dtype; 75297929ea7SJunchao Zhang (*newsf)->vscat.to_n = sf->vscat.to_n; 75397929ea7SJunchao Zhang (*newsf)->vscat.from_n = sf->vscat.from_n; 75497929ea7SJunchao Zhang /* Do not copy lsf. Build it on demand since it is rarely used */ 75597929ea7SJunchao Zhang 75620c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 75720c24465SJunchao Zhang (*newsf)->backend = sf->backend; 75871438e86SJunchao Zhang (*newsf)->unknown_input_stream = sf->unknown_input_stream; 75920c24465SJunchao Zhang (*newsf)->use_gpu_aware_mpi = sf->use_gpu_aware_mpi; 76020c24465SJunchao Zhang (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi; 76120c24465SJunchao Zhang #endif 762dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Duplicate, opt, *newsf); 76320c24465SJunchao Zhang /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */ 7643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76595fce210SBarry Smith } 76695fce210SBarry Smith 76795fce210SBarry Smith /*@C 76895fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 76995fce210SBarry Smith 77095fce210SBarry Smith Not Collective 77195fce210SBarry Smith 7724165533cSJose E. Roman Input Parameter: 77395fce210SBarry Smith . sf - star forest 77495fce210SBarry Smith 7754165533cSJose E. Roman Output Parameters: 77695fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 77795fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 77820662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers (if returned value is `NULL`, it means leaves are in contiguous storage) 77995fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 78095fce210SBarry Smith 781cab54364SBarry Smith Level: intermediate 782cab54364SBarry Smith 783373e0d91SLisandro Dalcin Notes: 78420662ed9SBarry Smith We are not currently requiring that the graph is set, thus returning `nroots` = -1 if it has not been set yet 785373e0d91SLisandro Dalcin 78620662ed9SBarry Smith The returned `ilocal` and `iremote` might contain values in different order than the input ones in `PetscSFSetGraph()` 787db2b9530SVaclav Hapla 7888dbb0df6SBarry Smith Fortran Notes: 78920662ed9SBarry Smith The returned `iremote` array is a copy and must be deallocated after use. Consequently, if you 79020662ed9SBarry Smith want to update the graph, you must call `PetscSFSetGraph()` after modifying the `iremote` array. 7918dbb0df6SBarry Smith 79220662ed9SBarry Smith To check for a `NULL` `ilocal` use 7938dbb0df6SBarry Smith $ if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then 794ca797d7aSLawrence Mitchell 79520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()` 79695fce210SBarry Smith @*/ 797d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 798d71ae5a4SJacob Faibussowitsch { 79995fce210SBarry Smith PetscFunctionBegin; 80095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 801b8dee149SJunchao Zhang if (sf->ops->GetGraph) { 802f4f49eeaSPierre Jolivet PetscCall(sf->ops->GetGraph(sf, nroots, nleaves, ilocal, iremote)); 803b8dee149SJunchao Zhang } else { 80495fce210SBarry Smith if (nroots) *nroots = sf->nroots; 80595fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 80695fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 80795fce210SBarry Smith if (iremote) *iremote = sf->remote; 808b8dee149SJunchao Zhang } 8093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81095fce210SBarry Smith } 81195fce210SBarry Smith 81229046d53SLisandro Dalcin /*@ 81395fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 81495fce210SBarry Smith 81595fce210SBarry Smith Not Collective 81695fce210SBarry Smith 8174165533cSJose E. Roman Input Parameter: 81895fce210SBarry Smith . sf - star forest 81995fce210SBarry Smith 8204165533cSJose E. Roman Output Parameters: 82120662ed9SBarry Smith + minleaf - minimum active leaf on this process. Returns 0 if there are no leaves. 82220662ed9SBarry Smith - maxleaf - maximum active leaf on this process. Returns -1 if there are no leaves. 82395fce210SBarry Smith 82495fce210SBarry Smith Level: developer 82595fce210SBarry Smith 82620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 82795fce210SBarry Smith @*/ 828d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf) 829d71ae5a4SJacob Faibussowitsch { 83095fce210SBarry Smith PetscFunctionBegin; 83195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 83229046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 83395fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 83495fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 8353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83695fce210SBarry Smith } 83795fce210SBarry Smith 838*ffeef943SBarry Smith /*@ 839cab54364SBarry Smith PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database 840fe2efc57SMark 84120f4b53cSBarry Smith Collective 842fe2efc57SMark 843fe2efc57SMark Input Parameters: 844fe2efc57SMark + A - the star forest 845cab54364SBarry Smith . obj - Optional object that provides the prefix for the option names 846736c3998SJose E. Roman - name - command line option 847fe2efc57SMark 848fe2efc57SMark Level: intermediate 849cab54364SBarry Smith 85020662ed9SBarry Smith Note: 85120662ed9SBarry Smith See `PetscObjectViewFromOptions()` for possible `PetscViewer` and `PetscViewerFormat` 85220662ed9SBarry Smith 853db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()` 854fe2efc57SMark @*/ 855d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[]) 856d71ae5a4SJacob Faibussowitsch { 857fe2efc57SMark PetscFunctionBegin; 858fe2efc57SMark PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1); 8599566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 861fe2efc57SMark } 862fe2efc57SMark 863*ffeef943SBarry Smith /*@ 86495fce210SBarry Smith PetscSFView - view a star forest 86595fce210SBarry Smith 86695fce210SBarry Smith Collective 86795fce210SBarry Smith 8684165533cSJose E. Roman Input Parameters: 86995fce210SBarry Smith + sf - star forest 870cab54364SBarry Smith - viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD` 87195fce210SBarry Smith 87295fce210SBarry Smith Level: beginner 87395fce210SBarry Smith 874cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()` 87595fce210SBarry Smith @*/ 876d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer) 877d71ae5a4SJacob Faibussowitsch { 87895fce210SBarry Smith PetscBool iascii; 87995fce210SBarry Smith PetscViewerFormat format; 88095fce210SBarry Smith 88195fce210SBarry Smith PetscFunctionBegin; 88295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8839566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer)); 88495fce210SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 88595fce210SBarry Smith PetscCheckSameComm(sf, 1, viewer, 2); 8869566063dSJacob Faibussowitsch if (sf->graphset) PetscCall(PetscSFSetUp(sf)); 8879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 88853dd6d7dSJunchao Zhang if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) { 88995fce210SBarry Smith PetscMPIInt rank; 89081bfa7aaSJed Brown PetscInt ii, i, j; 89195fce210SBarry Smith 8929566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer)); 8939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 894dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 89580153354SVaclav Hapla if (!sf->graphset) { 8969566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n")); 8979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 8983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89980153354SVaclav Hapla } 9009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 9019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, sf->nroots, sf->nleaves, sf->nranks)); 90348a46eb9SPierre Jolivet for (i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index)); 9049566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9059566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 90695fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 90781bfa7aaSJed Brown PetscMPIInt *tmpranks, *perm; 9089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm)); 9099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks)); 91081bfa7aaSJed Brown for (i = 0; i < sf->nranks; i++) perm[i] = i; 9119566063dSJacob Faibussowitsch PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm)); 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank)); 91381bfa7aaSJed Brown for (ii = 0; ii < sf->nranks; ii++) { 91481bfa7aaSJed Brown i = perm[ii]; 9159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i])); 91648a46eb9SPierre Jolivet for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j])); 91795fce210SBarry Smith } 9189566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmpranks, perm)); 91995fce210SBarry Smith } 9209566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 922dd5b3ca6SJunchao Zhang } 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 92495fce210SBarry Smith } 925dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, View, viewer); 9263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92795fce210SBarry Smith } 92895fce210SBarry Smith 92995fce210SBarry Smith /*@C 930dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 93195fce210SBarry Smith 93295fce210SBarry Smith Not Collective 93395fce210SBarry Smith 9344165533cSJose E. Roman Input Parameter: 93595fce210SBarry Smith . sf - star forest 93695fce210SBarry Smith 9374165533cSJose E. Roman Output Parameters: 93895fce210SBarry Smith + nranks - number of ranks referenced by local part 93920662ed9SBarry Smith . ranks - [`nranks`] array of ranks 94020662ed9SBarry Smith . roffset - [`nranks`+1] offset in `rmine`/`rremote` for each rank 94120662ed9SBarry Smith . rmine - [`roffset`[`nranks`]] concatenated array holding local indices referencing each remote rank 94220662ed9SBarry Smith - rremote - [`roffset`[`nranks`]] concatenated array holding remote indices referenced for each remote rank 94395fce210SBarry Smith 94495fce210SBarry Smith Level: developer 94595fce210SBarry Smith 946cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()` 94795fce210SBarry Smith @*/ 948d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 949d71ae5a4SJacob Faibussowitsch { 95095fce210SBarry Smith PetscFunctionBegin; 95195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 95228b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 953dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 9549927e4dfSBarry Smith PetscUseTypeMethod(sf, GetRootRanks, nranks, ranks, roffset, rmine, rremote); 955dec1416fSJunchao Zhang } else { 956dec1416fSJunchao Zhang /* The generic implementation */ 95795fce210SBarry Smith if (nranks) *nranks = sf->nranks; 95895fce210SBarry Smith if (ranks) *ranks = sf->ranks; 95995fce210SBarry Smith if (roffset) *roffset = sf->roffset; 96095fce210SBarry Smith if (rmine) *rmine = sf->rmine; 96195fce210SBarry Smith if (rremote) *rremote = sf->rremote; 962dec1416fSJunchao Zhang } 9633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 96495fce210SBarry Smith } 96595fce210SBarry Smith 9668750ddebSJunchao Zhang /*@C 9678750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 9688750ddebSJunchao Zhang 9698750ddebSJunchao Zhang Not Collective 9708750ddebSJunchao Zhang 9714165533cSJose E. Roman Input Parameter: 9728750ddebSJunchao Zhang . sf - star forest 9738750ddebSJunchao Zhang 9744165533cSJose E. Roman Output Parameters: 9758750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 97620662ed9SBarry Smith . iranks - [`niranks`] array of ranks 97720662ed9SBarry Smith . ioffset - [`niranks`+1] offset in `irootloc` for each rank 97820662ed9SBarry Smith - irootloc - [`ioffset`[`niranks`]] concatenated array holding local indices of roots referenced by each leaf rank 9798750ddebSJunchao Zhang 9808750ddebSJunchao Zhang Level: developer 9818750ddebSJunchao Zhang 982cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 9838750ddebSJunchao Zhang @*/ 984d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 985d71ae5a4SJacob Faibussowitsch { 9868750ddebSJunchao Zhang PetscFunctionBegin; 9878750ddebSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 98828b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 9898750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 9909927e4dfSBarry Smith PetscUseTypeMethod(sf, GetLeafRanks, niranks, iranks, ioffset, irootloc); 9918750ddebSJunchao Zhang } else { 9928750ddebSJunchao Zhang PetscSFType type; 9939566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 99498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 9958750ddebSJunchao Zhang } 9963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9978750ddebSJunchao Zhang } 9988750ddebSJunchao Zhang 999d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list) 1000d71ae5a4SJacob Faibussowitsch { 1001b5a8e515SJed Brown PetscInt i; 1002b5a8e515SJed Brown for (i = 0; i < n; i++) { 1003b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 1004b5a8e515SJed Brown } 1005b5a8e515SJed Brown return PETSC_FALSE; 1006b5a8e515SJed Brown } 1007b5a8e515SJed Brown 100895fce210SBarry Smith /*@C 1009cab54364SBarry Smith PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations. 101021c688dcSJed Brown 101121c688dcSJed Brown Collective 101221c688dcSJed Brown 10134165533cSJose E. Roman Input Parameters: 1014cab54364SBarry Smith + sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called 1015cab54364SBarry Smith - dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange) 101621c688dcSJed Brown 101721c688dcSJed Brown Level: developer 101821c688dcSJed Brown 1019cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 102021c688dcSJed Brown @*/ 1021d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup) 1022d71ae5a4SJacob Faibussowitsch { 1023eec179cfSJacob Faibussowitsch PetscHMapI table; 1024eec179cfSJacob Faibussowitsch PetscHashIter pos; 1025b5a8e515SJed Brown PetscMPIInt size, groupsize, *groupranks; 1026247e8311SStefano Zampini PetscInt *rcount, *ranks; 1027247e8311SStefano Zampini PetscInt i, irank = -1, orank = -1; 102821c688dcSJed Brown 102921c688dcSJed Brown PetscFunctionBegin; 103021c688dcSJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 103129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 1033eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(10, &table)); 103421c688dcSJed Brown for (i = 0; i < sf->nleaves; i++) { 103521c688dcSJed Brown /* Log 1-based rank */ 1036eec179cfSJacob Faibussowitsch PetscCall(PetscHMapISetWithMode(table, sf->remote[i].rank + 1, 1, ADD_VALUES)); 103721c688dcSJed Brown } 1038eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(table, &sf->nranks)); 10399566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 10409566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks)); 1041eec179cfSJacob Faibussowitsch PetscHashIterBegin(table, pos); 104221c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 1043eec179cfSJacob Faibussowitsch PetscHashIterGetKey(table, pos, ranks[i]); 1044eec179cfSJacob Faibussowitsch PetscHashIterGetVal(table, pos, rcount[i]); 1045eec179cfSJacob Faibussowitsch PetscHashIterNext(table, pos); 104621c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 104721c688dcSJed Brown } 1048eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&table)); 1049b5a8e515SJed Brown 1050b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 1051b5a8e515SJed Brown { 10527fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 1053b5a8e515SJed Brown PetscMPIInt *dgroupranks; 10549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 10559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_size(dgroup, &groupsize)); 10569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &dgroupranks)); 10579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &groupranks)); 1058b5a8e515SJed Brown for (i = 0; i < groupsize; i++) dgroupranks[i] = i; 10599566063dSJacob Faibussowitsch if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks)); 10609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 10619566063dSJacob Faibussowitsch PetscCall(PetscFree(dgroupranks)); 1062b5a8e515SJed Brown } 1063b5a8e515SJed Brown 1064b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 1065b5a8e515SJed Brown for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) { 1066b5a8e515SJed Brown for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */ 1067b5a8e515SJed Brown if (InList(ranks[i], groupsize, groupranks)) break; 1068b5a8e515SJed Brown } 1069b5a8e515SJed Brown for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 1070b5a8e515SJed Brown if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break; 1071b5a8e515SJed Brown } 1072b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 1073b5a8e515SJed Brown PetscInt tmprank, tmpcount; 1074247e8311SStefano Zampini 1075b5a8e515SJed Brown tmprank = ranks[i]; 1076b5a8e515SJed Brown tmpcount = rcount[i]; 1077b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 1078b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 1079b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 1080b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 1081b5a8e515SJed Brown sf->ndranks++; 1082b5a8e515SJed Brown } 1083b5a8e515SJed Brown } 10849566063dSJacob Faibussowitsch PetscCall(PetscFree(groupranks)); 10859566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(sf->ndranks, ranks, rcount)); 10865c0db29aSPierre Jolivet if (rcount) PetscCall(PetscSortIntWithArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks)); 108721c688dcSJed Brown sf->roffset[0] = 0; 108821c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10899566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i)); 109021c688dcSJed Brown sf->roffset[i + 1] = sf->roffset[i] + rcount[i]; 109121c688dcSJed Brown rcount[i] = 0; 109221c688dcSJed Brown } 1093247e8311SStefano Zampini for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) { 1094247e8311SStefano Zampini /* short circuit */ 1095247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 109621c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 10979566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->ndranks, sf->ranks, &irank)); 1098b5a8e515SJed Brown if (irank < 0) { 10999566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank)); 1100b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 110121c688dcSJed Brown } 1102247e8311SStefano Zampini orank = sf->remote[i].rank; 1103247e8311SStefano Zampini } 110408401ef6SPierre Jolivet PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %" PetscInt_FMT " in array", sf->remote[i].rank); 110521c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 110621c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 110721c688dcSJed Brown rcount[irank]++; 110821c688dcSJed Brown } 11099566063dSJacob Faibussowitsch PetscCall(PetscFree2(rcount, ranks)); 11103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 111121c688dcSJed Brown } 111221c688dcSJed Brown 111321c688dcSJed Brown /*@C 111495fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 111595fce210SBarry Smith 111695fce210SBarry Smith Collective 111795fce210SBarry Smith 11184165533cSJose E. Roman Input Parameter: 111995fce210SBarry Smith . sf - star forest 112095fce210SBarry Smith 11214165533cSJose E. Roman Output Parameters: 112295fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 112395fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 112495fce210SBarry Smith 112595fce210SBarry Smith Level: developer 112695fce210SBarry Smith 1127cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()` 112895fce210SBarry Smith @*/ 1129d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing) 1130d71ae5a4SJacob Faibussowitsch { 11317fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 113295fce210SBarry Smith 113395fce210SBarry Smith PetscFunctionBegin; 113408401ef6SPierre Jolivet PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups"); 113595fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 113695fce210SBarry Smith PetscInt i; 113795fce210SBarry Smith const PetscInt *indegree; 113895fce210SBarry Smith PetscMPIInt rank, *outranks, *inranks; 113995fce210SBarry Smith PetscSFNode *remote; 114095fce210SBarry Smith PetscSF bgcount; 114195fce210SBarry Smith 114295fce210SBarry Smith /* Compute the number of incoming ranks */ 11439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nranks, &remote)); 114495fce210SBarry Smith for (i = 0; i < sf->nranks; i++) { 114595fce210SBarry Smith remote[i].rank = sf->ranks[i]; 114695fce210SBarry Smith remote[i].index = 0; 114795fce210SBarry Smith } 11489566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount)); 11499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 11509566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree)); 11519566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree)); 115295fce210SBarry Smith /* Enumerate the incoming ranks */ 11539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks)); 11549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 115595fce210SBarry Smith for (i = 0; i < sf->nranks; i++) outranks[i] = rank; 11569566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks)); 11579566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks)); 11589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, indegree[0], inranks, &sf->ingroup)); 11609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 11619566063dSJacob Faibussowitsch PetscCall(PetscFree2(inranks, outranks)); 11629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&bgcount)); 116395fce210SBarry Smith } 116495fce210SBarry Smith *incoming = sf->ingroup; 116595fce210SBarry Smith 116695fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 11679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup)); 11699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 117095fce210SBarry Smith } 117195fce210SBarry Smith *outgoing = sf->outgroup; 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 117395fce210SBarry Smith } 117495fce210SBarry Smith 117529046d53SLisandro Dalcin /*@ 11760dd791a8SStefano Zampini PetscSFGetRanksSF - gets the `PetscSF` to perform communications with root ranks 11770dd791a8SStefano Zampini 11780dd791a8SStefano Zampini Collective 11790dd791a8SStefano Zampini 11800dd791a8SStefano Zampini Input Parameter: 11810dd791a8SStefano Zampini . sf - star forest 11820dd791a8SStefano Zampini 11830dd791a8SStefano Zampini Output Parameter: 11840dd791a8SStefano Zampini . rsf - the star forest with a single root per process to perform communications 11850dd791a8SStefano Zampini 11860dd791a8SStefano Zampini Level: developer 11870dd791a8SStefano Zampini 11880dd791a8SStefano Zampini .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetRootRanks()` 11890dd791a8SStefano Zampini @*/ 11900dd791a8SStefano Zampini PetscErrorCode PetscSFGetRanksSF(PetscSF sf, PetscSF *rsf) 11910dd791a8SStefano Zampini { 11920dd791a8SStefano Zampini PetscFunctionBegin; 11930dd791a8SStefano Zampini PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 11940dd791a8SStefano Zampini PetscAssertPointer(rsf, 2); 11950dd791a8SStefano Zampini if (!sf->rankssf) { 11960dd791a8SStefano Zampini PetscSFNode *rremotes; 11970dd791a8SStefano Zampini const PetscMPIInt *ranks; 11980dd791a8SStefano Zampini PetscInt nranks; 11990dd791a8SStefano Zampini 12000dd791a8SStefano Zampini PetscCall(PetscSFGetRootRanks(sf, &nranks, &ranks, NULL, NULL, NULL)); 12010dd791a8SStefano Zampini PetscCall(PetscMalloc1(nranks, &rremotes)); 12020dd791a8SStefano Zampini for (PetscInt i = 0; i < nranks; i++) { 12030dd791a8SStefano Zampini rremotes[i].rank = ranks[i]; 12040dd791a8SStefano Zampini rremotes[i].index = 0; 12050dd791a8SStefano Zampini } 12060dd791a8SStefano Zampini PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &sf->rankssf)); 12070dd791a8SStefano Zampini PetscCall(PetscSFSetGraph(sf->rankssf, 1, nranks, NULL, PETSC_OWN_POINTER, rremotes, PETSC_OWN_POINTER)); 12080dd791a8SStefano Zampini } 12090dd791a8SStefano Zampini *rsf = sf->rankssf; 12100dd791a8SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 12110dd791a8SStefano Zampini } 12120dd791a8SStefano Zampini 12130dd791a8SStefano Zampini /*@ 1214cab54364SBarry Smith PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters 121595fce210SBarry Smith 121695fce210SBarry Smith Collective 121795fce210SBarry Smith 12184165533cSJose E. Roman Input Parameter: 121995fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 122095fce210SBarry Smith 12214165533cSJose E. Roman Output Parameter: 122295fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 122395fce210SBarry Smith 122495fce210SBarry Smith Level: developer 122595fce210SBarry Smith 1226cab54364SBarry Smith Note: 1227cab54364SBarry Smith In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi 122895fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 122995fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 123095fce210SBarry Smith 1231cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()` 123295fce210SBarry Smith @*/ 1233d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi) 1234d71ae5a4SJacob Faibussowitsch { 123595fce210SBarry Smith PetscFunctionBegin; 123695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 12374f572ea9SToby Isaac PetscAssertPointer(multi, 2); 123895fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 12399566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 124095fce210SBarry Smith *multi = sf->multi; 1241013b3241SStefano Zampini sf->multi->multi = sf->multi; 12423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124395fce210SBarry Smith } 124495fce210SBarry Smith if (!sf->multi) { 124595fce210SBarry Smith const PetscInt *indegree; 12469837ea96SMatthew G. Knepley PetscInt i, *inoffset, *outones, *outoffset, maxlocal; 124795fce210SBarry Smith PetscSFNode *remote; 124829046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 12499566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &indegree)); 12509566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &indegree)); 12519566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset)); 125295fce210SBarry Smith inoffset[0] = 0; 125395fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i]; 12549837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outones[i] = 1; 12559566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 12569566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 125795fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 125876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Check that the expected number of increments occurred */ 1259ad540459SPierre Jolivet for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp"); 126076bd3646SJed Brown } 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &remote)); 126295fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 126395fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 126438e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 126595fce210SBarry Smith } 12669566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 1267013b3241SStefano Zampini sf->multi->multi = sf->multi; 12689566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 126995fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 127095fce210SBarry Smith PetscMPIInt rank; 127195fce210SBarry Smith PetscInt *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree; 127295fce210SBarry Smith PetscSFNode *newremote; 12739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 127495fce210SBarry Smith for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]); 12759566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset)); 12769837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outranks[i] = rank; 12779566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 12789566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 127995fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 128095fce210SBarry Smith for (i = 0; i < sf->nroots; i++) { 128195fce210SBarry Smith PetscInt j; 128295fce210SBarry Smith for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j; 12838e3a54c0SPierre Jolivet PetscCall(PetscSortIntWithArray(indegree[i], PetscSafePointerPlusOffset(inranks, inoffset[i]), tmpoffset)); 128495fce210SBarry Smith for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 128595fce210SBarry Smith } 12869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &newremote)); 128995fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 129095fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 129101365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 129295fce210SBarry Smith } 12939566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER)); 12949566063dSJacob Faibussowitsch PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset)); 129595fce210SBarry Smith } 12969566063dSJacob Faibussowitsch PetscCall(PetscFree3(inoffset, outones, outoffset)); 129795fce210SBarry Smith } 129895fce210SBarry Smith *multi = sf->multi; 12993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130095fce210SBarry Smith } 130195fce210SBarry Smith 130295fce210SBarry Smith /*@C 130320662ed9SBarry Smith PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots of a `PetscSF`, does not remap indices 130495fce210SBarry Smith 130595fce210SBarry Smith Collective 130695fce210SBarry Smith 13074165533cSJose E. Roman Input Parameters: 130895fce210SBarry Smith + sf - original star forest 1309ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 1310ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 131195fce210SBarry Smith 13124165533cSJose E. Roman Output Parameter: 1313cd620004SJunchao Zhang . esf - new star forest 131495fce210SBarry Smith 131595fce210SBarry Smith Level: advanced 131695fce210SBarry Smith 131795fce210SBarry Smith Note: 1318cab54364SBarry Smith To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can 131995fce210SBarry Smith be done by calling PetscSFGetGraph(). 132095fce210SBarry Smith 1321cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 132295fce210SBarry Smith @*/ 1323d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf) 1324d71ae5a4SJacob Faibussowitsch { 1325cd620004SJunchao Zhang PetscInt i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal; 1326cd620004SJunchao Zhang const PetscInt *ilocal; 1327cd620004SJunchao Zhang signed char *rootdata, *leafdata, *leafmem; 1328ba2a7774SJunchao Zhang const PetscSFNode *iremote; 1329f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1330f659e5c7SJunchao Zhang MPI_Comm comm; 133195fce210SBarry Smith 133295fce210SBarry Smith PetscFunctionBegin; 133395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 133429046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 13354f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 13364f572ea9SToby Isaac PetscAssertPointer(esf, 4); 13370511a646SMatthew G. Knepley 13389566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 13399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0)); 13409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 13419566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 1342cd620004SJunchao Zhang 134376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or out of range indices */ 1344cd620004SJunchao Zhang PetscBool dups; 13459566063dSJacob Faibussowitsch PetscCall(PetscCheckDupsInt(nselected, selected, &dups)); 134628b400f6SJacob Faibussowitsch PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups"); 1347511e6246SStefano Zampini for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root index %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots); 1348cd620004SJunchao Zhang } 1349f659e5c7SJunchao Zhang 1350dbbe0bcdSBarry Smith if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf); 1351dbbe0bcdSBarry Smith else { 1352cd620004SJunchao Zhang /* A generic version of creating embedded sf */ 13539566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf)); 1354cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 13559566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem)); 13568e3a54c0SPierre Jolivet leafdata = PetscSafePointerPlusOffset(leafmem, -minleaf); 1357cd620004SJunchao Zhang /* Tag selected roots and bcast to leaves */ 1358cd620004SJunchao Zhang for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1; 13599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 13609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 1361ba2a7774SJunchao Zhang 1362cd620004SJunchao Zhang /* Build esf with leaves that are still connected */ 1363cd620004SJunchao Zhang esf_nleaves = 0; 1364cd620004SJunchao Zhang for (i = 0; i < nleaves; i++) { 1365cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1366cd620004SJunchao Zhang /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs 1367cd620004SJunchao Zhang with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555 1368cd620004SJunchao Zhang */ 1369cd620004SJunchao Zhang esf_nleaves += (leafdata[j] ? 1 : 0); 1370cd620004SJunchao Zhang } 13719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal)); 13729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_iremote)); 1373cd620004SJunchao Zhang for (i = n = 0; i < nleaves; i++) { 1374cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1375cd620004SJunchao Zhang if (leafdata[j]) { 1376cd620004SJunchao Zhang new_ilocal[n] = j; 1377cd620004SJunchao Zhang new_iremote[n].rank = iremote[i].rank; 1378cd620004SJunchao Zhang new_iremote[n].index = iremote[i].index; 1379fc1ede2bSMatthew G. Knepley ++n; 138095fce210SBarry Smith } 138195fce210SBarry Smith } 13829566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, esf)); 13839566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*esf)); 13849566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 13859566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootdata, leafmem)); 1386f659e5c7SJunchao Zhang } 13879566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138995fce210SBarry Smith } 139095fce210SBarry Smith 13912f5fb4c2SMatthew G. Knepley /*@C 139220662ed9SBarry Smith PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves of a `PetscSF`, does not remap indices 13932f5fb4c2SMatthew G. Knepley 13942f5fb4c2SMatthew G. Knepley Collective 13952f5fb4c2SMatthew G. Knepley 13964165533cSJose E. Roman Input Parameters: 13972f5fb4c2SMatthew G. Knepley + sf - original star forest 1398f659e5c7SJunchao Zhang . nselected - number of selected leaves on this process 1399f659e5c7SJunchao Zhang - selected - indices of the selected leaves on this process 14002f5fb4c2SMatthew G. Knepley 14014165533cSJose E. Roman Output Parameter: 14022f5fb4c2SMatthew G. Knepley . newsf - new star forest 14032f5fb4c2SMatthew G. Knepley 14042f5fb4c2SMatthew G. Knepley Level: advanced 14052f5fb4c2SMatthew G. Knepley 1406cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 14072f5fb4c2SMatthew G. Knepley @*/ 1408d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf) 1409d71ae5a4SJacob Faibussowitsch { 1410f659e5c7SJunchao Zhang const PetscSFNode *iremote; 1411f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1412f659e5c7SJunchao Zhang const PetscInt *ilocal; 1413f659e5c7SJunchao Zhang PetscInt i, nroots, *leaves, *new_ilocal; 1414f659e5c7SJunchao Zhang MPI_Comm comm; 14152f5fb4c2SMatthew G. Knepley 14162f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 14172f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 141829046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 14194f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 14204f572ea9SToby Isaac PetscAssertPointer(newsf, 4); 14212f5fb4c2SMatthew G. Knepley 1422f659e5c7SJunchao Zhang /* Uniq selected[] and put results in leaves[] */ 14239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 14249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &leaves)); 14259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(leaves, selected, nselected)); 14269566063dSJacob Faibussowitsch PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves)); 142708401ef6SPierre Jolivet PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves); 1428f659e5c7SJunchao Zhang 1429f659e5c7SJunchao Zhang /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */ 1430dbbe0bcdSBarry Smith if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf); 1431dbbe0bcdSBarry Smith else { 14329566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote)); 14339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_ilocal)); 14349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_iremote)); 1435f659e5c7SJunchao Zhang for (i = 0; i < nselected; ++i) { 1436f659e5c7SJunchao Zhang const PetscInt l = leaves[i]; 1437f659e5c7SJunchao Zhang new_ilocal[i] = ilocal ? ilocal[l] : l; 1438f659e5c7SJunchao Zhang new_iremote[i].rank = iremote[l].rank; 1439f659e5c7SJunchao Zhang new_iremote[i].index = iremote[l].index; 14402f5fb4c2SMatthew G. Knepley } 14419566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf)); 14429566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 1443f659e5c7SJunchao Zhang } 14449566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 14453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14462f5fb4c2SMatthew G. Knepley } 14472f5fb4c2SMatthew G. Knepley 144895fce210SBarry Smith /*@C 1449cab54364SBarry Smith PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()` 14503482bfa8SJunchao Zhang 1451c3339decSBarry Smith Collective 14523482bfa8SJunchao Zhang 14534165533cSJose E. Roman Input Parameters: 14543482bfa8SJunchao Zhang + sf - star forest on which to communicate 14553482bfa8SJunchao Zhang . unit - data type associated with each node 14563482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14573482bfa8SJunchao Zhang - op - operation to use for reduction 14583482bfa8SJunchao Zhang 14594165533cSJose E. Roman Output Parameter: 14603482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14613482bfa8SJunchao Zhang 14623482bfa8SJunchao Zhang Level: intermediate 14633482bfa8SJunchao Zhang 146420662ed9SBarry Smith Note: 146520662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1466da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1467cab54364SBarry Smith use `PetscSFBcastWithMemTypeBegin()` instead. 1468cab54364SBarry Smith 1469cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()` 14703482bfa8SJunchao Zhang @*/ 1471d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1472d71ae5a4SJacob Faibussowitsch { 1473eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 14743482bfa8SJunchao Zhang 14753482bfa8SJunchao Zhang PetscFunctionBegin; 14763482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14779566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14789566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14799566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 14809566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1481dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14829566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14843482bfa8SJunchao Zhang } 14853482bfa8SJunchao Zhang 14863482bfa8SJunchao Zhang /*@C 148720662ed9SBarry Smith PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call 148820662ed9SBarry Smith to `PetscSFBcastEnd()` 1489d0295fc0SJunchao Zhang 1490c3339decSBarry Smith Collective 1491d0295fc0SJunchao Zhang 14924165533cSJose E. Roman Input Parameters: 1493d0295fc0SJunchao Zhang + sf - star forest on which to communicate 1494d0295fc0SJunchao Zhang . unit - data type associated with each node 1495d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1496d0295fc0SJunchao Zhang . rootdata - buffer to broadcast 1497d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1498d0295fc0SJunchao Zhang - op - operation to use for reduction 1499d0295fc0SJunchao Zhang 15004165533cSJose E. Roman Output Parameter: 1501d0295fc0SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 1502d0295fc0SJunchao Zhang 1503d0295fc0SJunchao Zhang Level: intermediate 1504d0295fc0SJunchao Zhang 1505cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()` 1506d0295fc0SJunchao Zhang @*/ 1507d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 1508d71ae5a4SJacob Faibussowitsch { 1509d0295fc0SJunchao Zhang PetscFunctionBegin; 1510d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15119566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15129566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1513dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 15149566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 15153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1516d0295fc0SJunchao Zhang } 1517d0295fc0SJunchao Zhang 1518d0295fc0SJunchao Zhang /*@C 151920662ed9SBarry Smith PetscSFBcastEnd - end a broadcast and reduce operation started with `PetscSFBcastBegin()` or `PetscSFBcastWithMemTypeBegin()` 15203482bfa8SJunchao Zhang 15213482bfa8SJunchao Zhang Collective 15223482bfa8SJunchao Zhang 15234165533cSJose E. Roman Input Parameters: 15243482bfa8SJunchao Zhang + sf - star forest 15253482bfa8SJunchao Zhang . unit - data type 15263482bfa8SJunchao Zhang . rootdata - buffer to broadcast 15273482bfa8SJunchao Zhang - op - operation to use for reduction 15283482bfa8SJunchao Zhang 15294165533cSJose E. Roman Output Parameter: 15303482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 15313482bfa8SJunchao Zhang 15323482bfa8SJunchao Zhang Level: intermediate 15333482bfa8SJunchao Zhang 1534cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()` 15353482bfa8SJunchao Zhang @*/ 1536d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1537d71ae5a4SJacob Faibussowitsch { 15383482bfa8SJunchao Zhang PetscFunctionBegin; 15393482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15409566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0)); 1541dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op); 15429566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0)); 15433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15443482bfa8SJunchao Zhang } 15453482bfa8SJunchao Zhang 15463482bfa8SJunchao Zhang /*@C 1547cab54364SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()` 154895fce210SBarry Smith 154995fce210SBarry Smith Collective 155095fce210SBarry Smith 15514165533cSJose E. Roman Input Parameters: 155295fce210SBarry Smith + sf - star forest 155395fce210SBarry Smith . unit - data type 155495fce210SBarry Smith . leafdata - values to reduce 155595fce210SBarry Smith - op - reduction operation 155695fce210SBarry Smith 15574165533cSJose E. Roman Output Parameter: 155895fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 155995fce210SBarry Smith 156095fce210SBarry Smith Level: intermediate 156195fce210SBarry Smith 156220662ed9SBarry Smith Note: 156320662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1564da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1565cab54364SBarry Smith use `PetscSFReduceWithMemTypeBegin()` instead. 1566d0295fc0SJunchao Zhang 156720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`, `PetscSFReduceEnd()` 156895fce210SBarry Smith @*/ 1569d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1570d71ae5a4SJacob Faibussowitsch { 1571eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 157295fce210SBarry Smith 157395fce210SBarry Smith PetscFunctionBegin; 157495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15759566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15769566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15779566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 15789566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1579f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15809566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158295fce210SBarry Smith } 158395fce210SBarry Smith 158495fce210SBarry Smith /*@C 1585cab54364SBarry Smith PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()` 1586d0295fc0SJunchao Zhang 1587d0295fc0SJunchao Zhang Collective 1588d0295fc0SJunchao Zhang 15894165533cSJose E. Roman Input Parameters: 1590d0295fc0SJunchao Zhang + sf - star forest 1591d0295fc0SJunchao Zhang . unit - data type 1592d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1593d0295fc0SJunchao Zhang . leafdata - values to reduce 1594d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1595d0295fc0SJunchao Zhang - op - reduction operation 1596d0295fc0SJunchao Zhang 15974165533cSJose E. Roman Output Parameter: 1598d0295fc0SJunchao Zhang . rootdata - result of reduction of values from all leaves of each root 1599d0295fc0SJunchao Zhang 1600d0295fc0SJunchao Zhang Level: intermediate 1601d0295fc0SJunchao Zhang 160220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()`, `PetscSFReduceEnd()` 1603d0295fc0SJunchao Zhang @*/ 1604d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 1605d71ae5a4SJacob Faibussowitsch { 1606d0295fc0SJunchao Zhang PetscFunctionBegin; 1607d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16089566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16099566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 1610f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 16119566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 16123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1613d0295fc0SJunchao Zhang } 1614d0295fc0SJunchao Zhang 1615d0295fc0SJunchao Zhang /*@C 161620662ed9SBarry Smith PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` or `PetscSFReduceWithMemTypeBegin()` 161795fce210SBarry Smith 161895fce210SBarry Smith Collective 161995fce210SBarry Smith 16204165533cSJose E. Roman Input Parameters: 162195fce210SBarry Smith + sf - star forest 162295fce210SBarry Smith . unit - data type 162395fce210SBarry Smith . leafdata - values to reduce 162495fce210SBarry Smith - op - reduction operation 162595fce210SBarry Smith 16264165533cSJose E. Roman Output Parameter: 162795fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 162895fce210SBarry Smith 162995fce210SBarry Smith Level: intermediate 163095fce210SBarry Smith 163120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()`, `PetscSFReduceBegin()`, `PetscSFReduceWithMemTypeBegin()` 163295fce210SBarry Smith @*/ 1633d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1634d71ae5a4SJacob Faibussowitsch { 163595fce210SBarry Smith PetscFunctionBegin; 163695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16379566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 1638dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op); 16399566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 16403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 164195fce210SBarry Smith } 164295fce210SBarry Smith 164395fce210SBarry Smith /*@C 1644cab54364SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, 1645cab54364SBarry Smith to be completed with `PetscSFFetchAndOpEnd()` 1646a1729e3fSJunchao Zhang 1647a1729e3fSJunchao Zhang Collective 1648a1729e3fSJunchao Zhang 16494165533cSJose E. Roman Input Parameters: 1650a1729e3fSJunchao Zhang + sf - star forest 1651a1729e3fSJunchao Zhang . unit - data type 1652a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1653a1729e3fSJunchao Zhang - op - operation to use for reduction 1654a1729e3fSJunchao Zhang 16554165533cSJose E. Roman Output Parameters: 1656a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1657a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1658a1729e3fSJunchao Zhang 1659a1729e3fSJunchao Zhang Level: advanced 1660a1729e3fSJunchao Zhang 1661a1729e3fSJunchao Zhang Note: 1662a1729e3fSJunchao Zhang The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 1663a1729e3fSJunchao Zhang might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 1664a1729e3fSJunchao Zhang not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 1665a1729e3fSJunchao Zhang integers. 1666a1729e3fSJunchao Zhang 1667cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1668a1729e3fSJunchao Zhang @*/ 1669d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1670d71ae5a4SJacob Faibussowitsch { 1671eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype, leafupdatemtype; 1672a1729e3fSJunchao Zhang 1673a1729e3fSJunchao Zhang PetscFunctionBegin; 1674a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16759566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16779566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 16789566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 16799566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype)); 168008401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1681dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1684a1729e3fSJunchao Zhang } 1685a1729e3fSJunchao Zhang 1686a1729e3fSJunchao Zhang /*@C 1687cab54364SBarry Smith PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by 1688cab54364SBarry Smith applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()` 1689d3b3e55cSJunchao Zhang 1690d3b3e55cSJunchao Zhang Collective 1691d3b3e55cSJunchao Zhang 1692d3b3e55cSJunchao Zhang Input Parameters: 1693d3b3e55cSJunchao Zhang + sf - star forest 1694d3b3e55cSJunchao Zhang . unit - data type 1695d3b3e55cSJunchao Zhang . rootmtype - memory type of rootdata 1696d3b3e55cSJunchao Zhang . leafmtype - memory type of leafdata 1697d3b3e55cSJunchao Zhang . leafdata - leaf values to use in reduction 1698d3b3e55cSJunchao Zhang . leafupdatemtype - memory type of leafupdate 1699d3b3e55cSJunchao Zhang - op - operation to use for reduction 1700d3b3e55cSJunchao Zhang 1701d3b3e55cSJunchao Zhang Output Parameters: 1702d3b3e55cSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1703d3b3e55cSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1704d3b3e55cSJunchao Zhang 1705d3b3e55cSJunchao Zhang Level: advanced 1706d3b3e55cSJunchao Zhang 1707cab54364SBarry Smith Note: 1708cab54364SBarry Smith See `PetscSFFetchAndOpBegin()` for more details. 1709d3b3e55cSJunchao Zhang 171020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpEnd()` 1711d3b3e55cSJunchao Zhang @*/ 1712d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op) 1713d71ae5a4SJacob Faibussowitsch { 1714d3b3e55cSJunchao Zhang PetscFunctionBegin; 1715d3b3e55cSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17169566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 17179566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 171808401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1719dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 17209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 17213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1722d3b3e55cSJunchao Zhang } 1723d3b3e55cSJunchao Zhang 1724d3b3e55cSJunchao Zhang /*@C 172520662ed9SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to `PetscSFFetchAndOpBegin()` or `PetscSFFetchAndOpWithMemTypeBegin()` 172620662ed9SBarry Smith to fetch values from roots and update atomically by applying operation using my leaf value 1727a1729e3fSJunchao Zhang 1728a1729e3fSJunchao Zhang Collective 1729a1729e3fSJunchao Zhang 17304165533cSJose E. Roman Input Parameters: 1731a1729e3fSJunchao Zhang + sf - star forest 1732a1729e3fSJunchao Zhang . unit - data type 1733a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1734a1729e3fSJunchao Zhang - op - operation to use for reduction 1735a1729e3fSJunchao Zhang 17364165533cSJose E. Roman Output Parameters: 1737a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1738a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1739a1729e3fSJunchao Zhang 1740a1729e3fSJunchao Zhang Level: advanced 1741a1729e3fSJunchao Zhang 174220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpBegin()`, `PetscSFFetchAndOpWithMemTypeBegin()` 1743a1729e3fSJunchao Zhang @*/ 1744d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1745d71ae5a4SJacob Faibussowitsch { 1746a1729e3fSJunchao Zhang PetscFunctionBegin; 1747a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17489566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1749dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op); 17509566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 17513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1752a1729e3fSJunchao Zhang } 1753a1729e3fSJunchao Zhang 1754a1729e3fSJunchao Zhang /*@C 1755cab54364SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()` 175695fce210SBarry Smith 175795fce210SBarry Smith Collective 175895fce210SBarry Smith 17594165533cSJose E. Roman Input Parameter: 176095fce210SBarry Smith . sf - star forest 176195fce210SBarry Smith 17624165533cSJose E. Roman Output Parameter: 176395fce210SBarry Smith . degree - degree of each root vertex 176495fce210SBarry Smith 176595fce210SBarry Smith Level: advanced 176695fce210SBarry Smith 1767cab54364SBarry Smith Note: 176820662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1769ffe67aa5SVáclav Hapla 1770cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()` 177195fce210SBarry Smith @*/ 1772d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt **degree) 1773d71ae5a4SJacob Faibussowitsch { 177495fce210SBarry Smith PetscFunctionBegin; 177595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 177695fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 17774f572ea9SToby Isaac PetscAssertPointer(degree, 2); 1778803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 17795b0d146aSStefano Zampini PetscInt i, nroots = sf->nroots, maxlocal; 178028b400f6SJacob Faibussowitsch PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 17815b0d146aSStefano Zampini maxlocal = sf->maxleaf - sf->minleaf + 1; 17829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &sf->degree)); 17839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 178429046d53SLisandro Dalcin for (i = 0; i < nroots; i++) sf->degree[i] = 0; 17859837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1; 17869566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 178795fce210SBarry Smith } 178895fce210SBarry Smith *degree = NULL; 17893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179095fce210SBarry Smith } 179195fce210SBarry Smith 179295fce210SBarry Smith /*@C 1793cab54364SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()` 179495fce210SBarry Smith 179595fce210SBarry Smith Collective 179695fce210SBarry Smith 17974165533cSJose E. Roman Input Parameter: 179895fce210SBarry Smith . sf - star forest 179995fce210SBarry Smith 18004165533cSJose E. Roman Output Parameter: 180195fce210SBarry Smith . degree - degree of each root vertex 180295fce210SBarry Smith 180395fce210SBarry Smith Level: developer 180495fce210SBarry Smith 1805cab54364SBarry Smith Note: 180620662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1807ffe67aa5SVáclav Hapla 1808cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()` 180995fce210SBarry Smith @*/ 1810d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree) 1811d71ae5a4SJacob Faibussowitsch { 181295fce210SBarry Smith PetscFunctionBegin; 181395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 181495fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 18154f572ea9SToby Isaac PetscAssertPointer(degree, 2); 181695fce210SBarry Smith if (!sf->degreeknown) { 181728b400f6SJacob Faibussowitsch PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 18189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 18199566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degreetmp)); 182095fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 182195fce210SBarry Smith } 182295fce210SBarry Smith *degree = sf->degree; 18233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 182495fce210SBarry Smith } 182595fce210SBarry Smith 1826673100f5SVaclav Hapla /*@C 182720662ed9SBarry Smith PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-`PetscSF` returned by `PetscSFGetMultiSF()`). 182866dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1829673100f5SVaclav Hapla 1830673100f5SVaclav Hapla Collective 1831673100f5SVaclav Hapla 18324165533cSJose E. Roman Input Parameters: 1833673100f5SVaclav Hapla + sf - star forest 1834cab54364SBarry Smith - degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()` 1835673100f5SVaclav Hapla 18364165533cSJose E. Roman Output Parameters: 183720662ed9SBarry Smith + nMultiRoots - (optional) number of multi-roots (roots of multi-`PetscSF`) 183820662ed9SBarry Smith - multiRootsOrigNumbering - original indices of multi-roots; length of this array is `nMultiRoots` 1839673100f5SVaclav Hapla 1840673100f5SVaclav Hapla Level: developer 1841673100f5SVaclav Hapla 1842cab54364SBarry Smith Note: 184320662ed9SBarry Smith The returned array `multiRootsOrigNumbering` is newly allocated and should be destroyed with `PetscFree()` when no longer needed. 1844ffe67aa5SVáclav Hapla 1845cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()` 1846673100f5SVaclav Hapla @*/ 1847d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1848d71ae5a4SJacob Faibussowitsch { 1849673100f5SVaclav Hapla PetscSF msf; 1850673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1851673100f5SVaclav Hapla 1852673100f5SVaclav Hapla PetscFunctionBegin; 1853673100f5SVaclav Hapla PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18549566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 18554f572ea9SToby Isaac if (nroots) PetscAssertPointer(degree, 2); 18564f572ea9SToby Isaac if (nMultiRoots) PetscAssertPointer(nMultiRoots, 3); 18574f572ea9SToby Isaac PetscAssertPointer(multiRootsOrigNumbering, 4); 18589566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &msf)); 18599566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL)); 18609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering)); 1861673100f5SVaclav Hapla for (i = 0, j = 0, k = 0; i < nroots; i++) { 1862673100f5SVaclav Hapla if (!degree[i]) continue; 1863ad540459SPierre Jolivet for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i; 1864673100f5SVaclav Hapla } 186508401ef6SPierre Jolivet PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail"); 186666dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 18673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1868673100f5SVaclav Hapla } 1869673100f5SVaclav Hapla 187095fce210SBarry Smith /*@C 1871cab54364SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()` 187295fce210SBarry Smith 187395fce210SBarry Smith Collective 187495fce210SBarry Smith 18754165533cSJose E. Roman Input Parameters: 187695fce210SBarry Smith + sf - star forest 187795fce210SBarry Smith . unit - data type 187895fce210SBarry Smith - leafdata - leaf data to gather to roots 187995fce210SBarry Smith 18804165533cSJose E. Roman Output Parameter: 188195fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 188295fce210SBarry Smith 188395fce210SBarry Smith Level: intermediate 188495fce210SBarry Smith 1885cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 188695fce210SBarry Smith @*/ 1887d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1888d71ae5a4SJacob Faibussowitsch { 1889a5526d50SJunchao Zhang PetscSF multi = NULL; 189095fce210SBarry Smith 189195fce210SBarry Smith PetscFunctionBegin; 189295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18939566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 18949566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18959566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 18963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189795fce210SBarry Smith } 189895fce210SBarry Smith 189995fce210SBarry Smith /*@C 1900cab54364SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()` 190195fce210SBarry Smith 190295fce210SBarry Smith Collective 190395fce210SBarry Smith 19044165533cSJose E. Roman Input Parameters: 190595fce210SBarry Smith + sf - star forest 190695fce210SBarry Smith . unit - data type 190795fce210SBarry Smith - leafdata - leaf data to gather to roots 190895fce210SBarry Smith 19094165533cSJose E. Roman Output Parameter: 191095fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 191195fce210SBarry Smith 191295fce210SBarry Smith Level: intermediate 191395fce210SBarry Smith 1914cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 191595fce210SBarry Smith @*/ 1916d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1917d71ae5a4SJacob Faibussowitsch { 1918a5526d50SJunchao Zhang PetscSF multi = NULL; 191995fce210SBarry Smith 192095fce210SBarry Smith PetscFunctionBegin; 192195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19229566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 19243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 192595fce210SBarry Smith } 192695fce210SBarry Smith 192795fce210SBarry Smith /*@C 1928cab54364SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()` 192995fce210SBarry Smith 193095fce210SBarry Smith Collective 193195fce210SBarry Smith 19324165533cSJose E. Roman Input Parameters: 193395fce210SBarry Smith + sf - star forest 193495fce210SBarry Smith . unit - data type 193595fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 193695fce210SBarry Smith 19374165533cSJose E. Roman Output Parameter: 193895fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 193995fce210SBarry Smith 194095fce210SBarry Smith Level: intermediate 194195fce210SBarry Smith 194220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterEnd()` 194395fce210SBarry Smith @*/ 1944d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1945d71ae5a4SJacob Faibussowitsch { 1946a5526d50SJunchao Zhang PetscSF multi = NULL; 194795fce210SBarry Smith 194895fce210SBarry Smith PetscFunctionBegin; 194995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19509566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 19519566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 195495fce210SBarry Smith } 195595fce210SBarry Smith 195695fce210SBarry Smith /*@C 1957cab54364SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()` 195895fce210SBarry Smith 195995fce210SBarry Smith Collective 196095fce210SBarry Smith 19614165533cSJose E. Roman Input Parameters: 196295fce210SBarry Smith + sf - star forest 196395fce210SBarry Smith . unit - data type 196495fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 196595fce210SBarry Smith 19664165533cSJose E. Roman Output Parameter: 196795fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 196895fce210SBarry Smith 196995fce210SBarry Smith Level: intermediate 197095fce210SBarry Smith 197120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterBegin()` 197295fce210SBarry Smith @*/ 1973d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1974d71ae5a4SJacob Faibussowitsch { 1975a5526d50SJunchao Zhang PetscSF multi = NULL; 197695fce210SBarry Smith 197795fce210SBarry Smith PetscFunctionBegin; 197895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19799566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19809566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 198295fce210SBarry Smith } 1983a7b3aa13SAta Mesgarnejad 1984d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf) 1985d71ae5a4SJacob Faibussowitsch { 1986a072220fSLawrence Mitchell PetscInt i, n, nleaves; 1987a072220fSLawrence Mitchell const PetscInt *ilocal = NULL; 1988a072220fSLawrence Mitchell PetscHSetI seen; 1989a072220fSLawrence Mitchell 1990a072220fSLawrence Mitchell PetscFunctionBegin; 1991b458e8f1SJose E. Roman if (PetscDefined(USE_DEBUG)) { 19929566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL)); 19939566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seen)); 1994a072220fSLawrence Mitchell for (i = 0; i < nleaves; i++) { 1995a072220fSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 19969566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(seen, leaf)); 1997a072220fSLawrence Mitchell } 19989566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(seen, &n)); 199908401ef6SPierre Jolivet PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique"); 20009566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seen)); 2001b458e8f1SJose E. Roman } 20023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2003a072220fSLawrence Mitchell } 200454729392SStefano Zampini 2005a7b3aa13SAta Mesgarnejad /*@ 2006cab54364SBarry Smith PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view 2007a7b3aa13SAta Mesgarnejad 2008a7b3aa13SAta Mesgarnejad Input Parameters: 2009cab54364SBarry Smith + sfA - The first `PetscSF` 2010cab54364SBarry Smith - sfB - The second `PetscSF` 2011a7b3aa13SAta Mesgarnejad 20122fe279fdSBarry Smith Output Parameter: 2013cab54364SBarry Smith . sfBA - The composite `PetscSF` 2014a7b3aa13SAta Mesgarnejad 2015a7b3aa13SAta Mesgarnejad Level: developer 2016a7b3aa13SAta Mesgarnejad 2017a072220fSLawrence Mitchell Notes: 2018cab54364SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 201954729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. 202054729392SStefano Zampini 202120662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s root space might be partially overlapped. The composition builds 202220662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s leaves only when there is a path between them. Unconnected 202320662ed9SBarry Smith nodes (roots or leaves) are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a 202420662ed9SBarry Smith `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfA`, then a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfB`, on connected nodes. 2025a072220fSLawrence Mitchell 2026db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 2027a7b3aa13SAta Mesgarnejad @*/ 2028d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2029d71ae5a4SJacob Faibussowitsch { 2030a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 2031d41018fbSJunchao Zhang PetscSFNode *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB; 203254729392SStefano Zampini const PetscInt *localPointsA, *localPointsB; 203354729392SStefano Zampini PetscInt *localPointsBA; 203454729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA; 203554729392SStefano Zampini PetscBool denseB; 2036a7b3aa13SAta Mesgarnejad 2037a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 2038a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 203929046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 204029046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 204129046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 204254729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 20434f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 20449566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 20459566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 204654729392SStefano Zampini 20479566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 20489566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 204920662ed9SBarry Smith /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size 205020662ed9SBarry Smith numRootsB; otherwise, garbage will be broadcasted. 205120662ed9SBarry Smith Example (comm size = 1): 205220662ed9SBarry Smith sfA: 0 <- (0, 0) 205320662ed9SBarry Smith sfB: 100 <- (0, 0) 205420662ed9SBarry Smith 101 <- (0, 1) 205520662ed9SBarry Smith Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget 205620662ed9SBarry Smith of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would 205720662ed9SBarry Smith receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on 205820662ed9SBarry Smith remotePointsA; if not recasted, point 101 would receive a garbage value. */ 20599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA)); 206054729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 206154729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 206254729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 206354729392SStefano Zampini } 206454729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 20650ea77edaSksagiyam PetscInt localp = localPointsA ? localPointsA[i] : i; 20660ea77edaSksagiyam 20670ea77edaSksagiyam if (localp >= numRootsB) continue; 20680ea77edaSksagiyam reorderedRemotePointsA[localp] = remotePointsA[i]; 206954729392SStefano Zampini } 2070d41018fbSJunchao Zhang remotePointsA = reorderedRemotePointsA; 20719566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 20729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB)); 20730ea77edaSksagiyam for (i = 0; i < maxleaf - minleaf + 1; i++) { 20740ea77edaSksagiyam leafdataB[i].rank = -1; 20750ea77edaSksagiyam leafdataB[i].index = -1; 20760ea77edaSksagiyam } 20778e3a54c0SPierre Jolivet PetscCall(PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20788e3a54c0SPierre Jolivet PetscCall(PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20799566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 2080d41018fbSJunchao Zhang 208154729392SStefano Zampini denseB = (PetscBool)!localPointsB; 208254729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 208354729392SStefano Zampini if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE; 208454729392SStefano Zampini else numLeavesBA++; 208554729392SStefano Zampini } 208654729392SStefano Zampini if (denseB) { 2087d41018fbSJunchao Zhang localPointsBA = NULL; 2088d41018fbSJunchao Zhang remotePointsBA = leafdataB; 2089d41018fbSJunchao Zhang } else { 20909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA)); 20919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA)); 209254729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 209354729392SStefano Zampini const PetscInt l = localPointsB ? localPointsB[i] : i; 209454729392SStefano Zampini 209554729392SStefano Zampini if (leafdataB[l - minleaf].rank == -1) continue; 209654729392SStefano Zampini remotePointsBA[numLeavesBA] = leafdataB[l - minleaf]; 209754729392SStefano Zampini localPointsBA[numLeavesBA] = l; 209854729392SStefano Zampini numLeavesBA++; 209954729392SStefano Zampini } 21009566063dSJacob Faibussowitsch PetscCall(PetscFree(leafdataB)); 2101d41018fbSJunchao Zhang } 21029566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 21039566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 21049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 21053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2106a7b3aa13SAta Mesgarnejad } 21071c6ba672SJunchao Zhang 210804c0ada0SJunchao Zhang /*@ 2109cab54364SBarry Smith PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one 211004c0ada0SJunchao Zhang 211104c0ada0SJunchao Zhang Input Parameters: 2112cab54364SBarry Smith + sfA - The first `PetscSF` 2113cab54364SBarry Smith - sfB - The second `PetscSF` 211404c0ada0SJunchao Zhang 21152fe279fdSBarry Smith Output Parameter: 2116cab54364SBarry Smith . sfBA - The composite `PetscSF`. 211704c0ada0SJunchao Zhang 211804c0ada0SJunchao Zhang Level: developer 211904c0ada0SJunchao Zhang 212054729392SStefano Zampini Notes: 212120662ed9SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 212254729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the 212320662ed9SBarry Smith second `PetscSF` must have a degree of 1, i.e., no roots have more than one leaf connected. 212454729392SStefano Zampini 212520662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s leaf space might be partially overlapped. The composition builds 212620662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s roots only when there is a path between them. Unconnected 212720662ed9SBarry Smith roots are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` 212820662ed9SBarry Smith on `sfA`, then 212920662ed9SBarry Smith a `PetscSFReduceBegin()`/`PetscSFReduceEnd()` on `sfB`, on connected roots. 213054729392SStefano Zampini 2131db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()` 213204c0ada0SJunchao Zhang @*/ 2133d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2134d71ae5a4SJacob Faibussowitsch { 213504c0ada0SJunchao Zhang const PetscSFNode *remotePointsA, *remotePointsB; 213604c0ada0SJunchao Zhang PetscSFNode *remotePointsBA; 213704c0ada0SJunchao Zhang const PetscInt *localPointsA, *localPointsB; 213854729392SStefano Zampini PetscSFNode *reorderedRemotePointsA = NULL; 213954729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA; 21405b0d146aSStefano Zampini MPI_Op op; 21415b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21425b0d146aSStefano Zampini PetscBool iswin; 21435b0d146aSStefano Zampini #endif 214404c0ada0SJunchao Zhang 214504c0ada0SJunchao Zhang PetscFunctionBegin; 214604c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 214704c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfA, 1); 214804c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 214904c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfB, 2); 215054729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 21514f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 21529566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 21539566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 215454729392SStefano Zampini 21559566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 21569566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 21575b0d146aSStefano Zampini 21585b0d146aSStefano Zampini /* TODO: Check roots of sfB have degree of 1 */ 21595b0d146aSStefano Zampini /* Once we implement it, we can replace the MPI_MAXLOC 216083df288dSJunchao Zhang with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect. 21615b0d146aSStefano Zampini We use MPI_MAXLOC only to have a deterministic output from this routine if 21625b0d146aSStefano Zampini the root condition is not meet. 21635b0d146aSStefano Zampini */ 21645b0d146aSStefano Zampini op = MPI_MAXLOC; 21655b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21665b0d146aSStefano Zampini /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */ 21679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin)); 216883df288dSJunchao Zhang if (iswin) op = MPI_REPLACE; 21695b0d146aSStefano Zampini #endif 21705b0d146aSStefano Zampini 21719566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 21729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA)); 217354729392SStefano Zampini for (i = 0; i < maxleaf - minleaf + 1; i++) { 217454729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 217554729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 217654729392SStefano Zampini } 217754729392SStefano Zampini if (localPointsA) { 217854729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 217954729392SStefano Zampini if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue; 218054729392SStefano Zampini reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i]; 218154729392SStefano Zampini } 218254729392SStefano Zampini } else { 218354729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 218454729392SStefano Zampini if (i > maxleaf || i < minleaf) continue; 218554729392SStefano Zampini reorderedRemotePointsA[i - minleaf] = remotePointsA[i]; 218654729392SStefano Zampini } 218754729392SStefano Zampini } 218854729392SStefano Zampini 21899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &localPointsBA)); 21909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &remotePointsBA)); 219154729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 219254729392SStefano Zampini remotePointsBA[i].rank = -1; 219354729392SStefano Zampini remotePointsBA[i].index = -1; 219454729392SStefano Zampini } 219554729392SStefano Zampini 21968e3a54c0SPierre Jolivet PetscCall(PetscSFReduceBegin(sfB, MPIU_2INT, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 21978e3a54c0SPierre Jolivet PetscCall(PetscSFReduceEnd(sfB, MPIU_2INT, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 21989566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 219954729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numRootsB; i++) { 220054729392SStefano Zampini if (remotePointsBA[i].rank == -1) continue; 220154729392SStefano Zampini remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank; 220254729392SStefano Zampini remotePointsBA[numLeavesBA].index = remotePointsBA[i].index; 220354729392SStefano Zampini localPointsBA[numLeavesBA] = i; 220454729392SStefano Zampini numLeavesBA++; 220554729392SStefano Zampini } 22069566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 22079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 22089566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 22093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221004c0ada0SJunchao Zhang } 221104c0ada0SJunchao Zhang 22121c6ba672SJunchao Zhang /* 2213cab54364SBarry Smith PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF` 22141c6ba672SJunchao Zhang 22152fe279fdSBarry Smith Input Parameter: 2216cab54364SBarry Smith . sf - The global `PetscSF` 22171c6ba672SJunchao Zhang 22182fe279fdSBarry Smith Output Parameter: 2219cab54364SBarry Smith . out - The local `PetscSF` 2220cab54364SBarry Smith 2221cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()` 22221c6ba672SJunchao Zhang */ 2223d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out) 2224d71ae5a4SJacob Faibussowitsch { 22251c6ba672SJunchao Zhang MPI_Comm comm; 22261c6ba672SJunchao Zhang PetscMPIInt myrank; 22271c6ba672SJunchao Zhang const PetscInt *ilocal; 22281c6ba672SJunchao Zhang const PetscSFNode *iremote; 22291c6ba672SJunchao Zhang PetscInt i, j, nroots, nleaves, lnleaves, *lilocal; 22301c6ba672SJunchao Zhang PetscSFNode *liremote; 22311c6ba672SJunchao Zhang PetscSF lsf; 22321c6ba672SJunchao Zhang 22331c6ba672SJunchao Zhang PetscFunctionBegin; 22341c6ba672SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2235dbbe0bcdSBarry Smith if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out); 2236dbbe0bcdSBarry Smith else { 22371c6ba672SJunchao Zhang /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */ 22389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 22399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &myrank)); 22401c6ba672SJunchao Zhang 22411c6ba672SJunchao Zhang /* Find out local edges and build a local SF */ 22429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 22439371c9d4SSatish Balay for (i = lnleaves = 0; i < nleaves; i++) { 22449371c9d4SSatish Balay if (iremote[i].rank == (PetscInt)myrank) lnleaves++; 22459371c9d4SSatish Balay } 22469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &lilocal)); 22479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &liremote)); 22481c6ba672SJunchao Zhang 22491c6ba672SJunchao Zhang for (i = j = 0; i < nleaves; i++) { 22501c6ba672SJunchao Zhang if (iremote[i].rank == (PetscInt)myrank) { 22511c6ba672SJunchao Zhang lilocal[j] = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */ 22521c6ba672SJunchao Zhang liremote[j].rank = 0; /* rank in PETSC_COMM_SELF */ 22531c6ba672SJunchao Zhang liremote[j].index = iremote[i].index; 22541c6ba672SJunchao Zhang j++; 22551c6ba672SJunchao Zhang } 22561c6ba672SJunchao Zhang } 22579566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 22589566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(lsf)); 22599566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER)); 22609566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 22611c6ba672SJunchao Zhang *out = lsf; 22621c6ba672SJunchao Zhang } 22633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22641c6ba672SJunchao Zhang } 2265dd5b3ca6SJunchao Zhang 2266dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */ 2267d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata) 2268d71ae5a4SJacob Faibussowitsch { 2269eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 2270dd5b3ca6SJunchao Zhang 2271dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2272dd5b3ca6SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 22739566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 22749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22759566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 22769566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 2277dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata); 22789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2280dd5b3ca6SJunchao Zhang } 2281dd5b3ca6SJunchao Zhang 2282157edd7aSVaclav Hapla /*@ 2283cab54364SBarry Smith PetscSFConcatenate - concatenate multiple `PetscSF` into one 2284157edd7aSVaclav Hapla 2285157edd7aSVaclav Hapla Input Parameters: 2286157edd7aSVaclav Hapla + comm - the communicator 2287cab54364SBarry Smith . nsfs - the number of input `PetscSF` 2288cab54364SBarry Smith . sfs - the array of input `PetscSF` 22891f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled 229020662ed9SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or `NULL` for contiguous storage 2291157edd7aSVaclav Hapla 22922fe279fdSBarry Smith Output Parameter: 2293cab54364SBarry Smith . newsf - The resulting `PetscSF` 2294157edd7aSVaclav Hapla 22951f40158dSVaclav Hapla Level: advanced 2296157edd7aSVaclav Hapla 2297157edd7aSVaclav Hapla Notes: 229820662ed9SBarry Smith The communicator of all `PetscSF`s in `sfs` must be comm. 2299157edd7aSVaclav Hapla 230020662ed9SBarry Smith Leaves are always concatenated locally, keeping them ordered by the input `PetscSF` index and original local order. 230120662ed9SBarry Smith 230220662ed9SBarry Smith The offsets in `leafOffsets` are added to the original leaf indices. 230320662ed9SBarry Smith 230420662ed9SBarry Smith If all input SFs use contiguous leaf storage (`ilocal` = `NULL`), `leafOffsets` can be passed as `NULL` as well. 230520662ed9SBarry Smith In this case, `NULL` is also passed as `ilocal` to the resulting `PetscSF`. 230620662ed9SBarry Smith 230720662ed9SBarry Smith If any input `PetscSF` has non-null `ilocal`, `leafOffsets` is needed to distinguish leaves from different input `PetscSF`s. 2308157edd7aSVaclav Hapla In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs). 2309157edd7aSVaclav Hapla 231020662ed9SBarry Smith All root modes retain the essential connectivity condition. 231120662ed9SBarry Smith If two leaves of the same input `PetscSF` are connected (sharing the same root), they are also connected in the output `PetscSF`. 231220662ed9SBarry Smith Parameter `rootMode` controls how the input root spaces are combined. 231320662ed9SBarry Smith For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input `PetscSF` (checked in debug mode) 231420662ed9SBarry Smith and is also the same in the output `PetscSF`. 23151f40158dSVaclav Hapla For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined. 23161f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally; 231720662ed9SBarry Smith roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input `PetscSF` and original local index, and renumbered contiguously. 23181f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally; 23191593df67SStefano Zampini roots of sfs[0], sfs[1], sfs[2], ... are joined globally, ordered by input `PetscSF` index and original global index, and renumbered contiguously; 23201f40158dSVaclav Hapla the original root ranks are ignored. 23211f40158dSVaclav Hapla For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, 232220662ed9SBarry Smith the output `PetscSF`'s root layout is such that the local number of roots is a sum of the input `PetscSF`'s local numbers of roots on each rank 232320662ed9SBarry Smith to keep the load balancing. 232420662ed9SBarry Smith However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, roots can move to different ranks. 23251f40158dSVaclav Hapla 23261f40158dSVaclav Hapla Example: 23271f40158dSVaclav Hapla We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running 232820662ed9SBarry Smith .vb 232920662ed9SBarry Smith make -C $PETSC_DIR/src/vec/is/sf/tests ex18 233020662ed9SBarry Smith for m in {local,global,shared}; do 233120662ed9SBarry Smith mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view 233220662ed9SBarry Smith done 233320662ed9SBarry Smith .ve 233420662ed9SBarry Smith we generate two identical `PetscSF`s sf_0 and sf_1, 233520662ed9SBarry Smith .vb 233620662ed9SBarry Smith PetscSF Object: sf_0 2 MPI processes 233720662ed9SBarry Smith type: basic 233820662ed9SBarry Smith rank #leaves #roots 233920662ed9SBarry Smith [ 0] 4 2 234020662ed9SBarry Smith [ 1] 4 2 234120662ed9SBarry Smith leaves roots roots in global numbering 234220662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 234320662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 234420662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 234520662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 234620662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 234720662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 234820662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 234920662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 235020662ed9SBarry Smith .ve 2351e33f79d8SJacob Faibussowitsch and pass them to `PetscSFConcatenate()` along with different choices of `rootMode`, yielding different result_sf\: 235220662ed9SBarry Smith .vb 235320662ed9SBarry Smith rootMode = local: 235420662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 235520662ed9SBarry Smith type: basic 235620662ed9SBarry Smith rank #leaves #roots 235720662ed9SBarry Smith [ 0] 8 4 235820662ed9SBarry Smith [ 1] 8 4 235920662ed9SBarry Smith leaves roots roots in global numbering 236020662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 236120662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 236220662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 4 236320662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 5 236420662ed9SBarry Smith ( 0, 4) <- ( 0, 2) = 2 236520662ed9SBarry Smith ( 0, 5) <- ( 0, 3) = 3 236620662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 236720662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 236820662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 236920662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 237020662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 4 237120662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 5 237220662ed9SBarry Smith ( 1, 4) <- ( 0, 2) = 2 237320662ed9SBarry Smith ( 1, 5) <- ( 0, 3) = 3 237420662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 237520662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 237620662ed9SBarry Smith 237720662ed9SBarry Smith rootMode = global: 237820662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 237920662ed9SBarry Smith type: basic 238020662ed9SBarry Smith rank #leaves #roots 238120662ed9SBarry Smith [ 0] 8 4 238220662ed9SBarry Smith [ 1] 8 4 238320662ed9SBarry Smith leaves roots roots in global numbering 238420662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 238520662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 238620662ed9SBarry Smith ( 0, 2) <- ( 0, 2) = 2 238720662ed9SBarry Smith ( 0, 3) <- ( 0, 3) = 3 238820662ed9SBarry Smith ( 0, 4) <- ( 1, 0) = 4 238920662ed9SBarry Smith ( 0, 5) <- ( 1, 1) = 5 239020662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 239120662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 239220662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 239320662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 239420662ed9SBarry Smith ( 1, 2) <- ( 0, 2) = 2 239520662ed9SBarry Smith ( 1, 3) <- ( 0, 3) = 3 239620662ed9SBarry Smith ( 1, 4) <- ( 1, 0) = 4 239720662ed9SBarry Smith ( 1, 5) <- ( 1, 1) = 5 239820662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 239920662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 240020662ed9SBarry Smith 240120662ed9SBarry Smith rootMode = shared: 240220662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 240320662ed9SBarry Smith type: basic 240420662ed9SBarry Smith rank #leaves #roots 240520662ed9SBarry Smith [ 0] 8 2 240620662ed9SBarry Smith [ 1] 8 2 240720662ed9SBarry Smith leaves roots roots in global numbering 240820662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 240920662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 241020662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 241120662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 241220662ed9SBarry Smith ( 0, 4) <- ( 0, 0) = 0 241320662ed9SBarry Smith ( 0, 5) <- ( 0, 1) = 1 241420662ed9SBarry Smith ( 0, 6) <- ( 1, 0) = 2 241520662ed9SBarry Smith ( 0, 7) <- ( 1, 1) = 3 241620662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 241720662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 241820662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 241920662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 242020662ed9SBarry Smith ( 1, 4) <- ( 0, 0) = 0 242120662ed9SBarry Smith ( 1, 5) <- ( 0, 1) = 1 242220662ed9SBarry Smith ( 1, 6) <- ( 1, 0) = 2 242320662ed9SBarry Smith ( 1, 7) <- ( 1, 1) = 3 242420662ed9SBarry Smith .ve 24251f40158dSVaclav Hapla 24261f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode` 2427157edd7aSVaclav Hapla @*/ 24281f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf) 2429d71ae5a4SJacob Faibussowitsch { 2430157edd7aSVaclav Hapla PetscInt i, s, nLeaves, nRoots; 2431157edd7aSVaclav Hapla PetscInt *leafArrayOffsets; 2432157edd7aSVaclav Hapla PetscInt *ilocal_new; 2433157edd7aSVaclav Hapla PetscSFNode *iremote_new; 2434157edd7aSVaclav Hapla PetscBool all_ilocal_null = PETSC_FALSE; 24351f40158dSVaclav Hapla PetscLayout glayout = NULL; 24361f40158dSVaclav Hapla PetscInt *gremote = NULL; 24371f40158dSVaclav Hapla PetscMPIInt rank, size; 2438157edd7aSVaclav Hapla 2439157edd7aSVaclav Hapla PetscFunctionBegin; 244012f479c1SVaclav Hapla if (PetscDefined(USE_DEBUG)) { 2441157edd7aSVaclav Hapla PetscSF dummy; /* just to have a PetscObject on comm for input validation */ 2442157edd7aSVaclav Hapla 24439566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &dummy)); 2444157edd7aSVaclav Hapla PetscValidLogicalCollectiveInt(dummy, nsfs, 2); 24454f572ea9SToby Isaac PetscAssertPointer(sfs, 3); 2446157edd7aSVaclav Hapla for (i = 0; i < nsfs; i++) { 2447157edd7aSVaclav Hapla PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3); 2448157edd7aSVaclav Hapla PetscCheckSameComm(dummy, 1, sfs[i], 3); 2449157edd7aSVaclav Hapla } 24501f40158dSVaclav Hapla PetscValidLogicalCollectiveEnum(dummy, rootMode, 4); 24514f572ea9SToby Isaac if (leafOffsets) PetscAssertPointer(leafOffsets, 5); 24524f572ea9SToby Isaac PetscAssertPointer(newsf, 6); 24539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dummy)); 2454157edd7aSVaclav Hapla } 2455157edd7aSVaclav Hapla if (!nsfs) { 24569566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 24579566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 24583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2459157edd7aSVaclav Hapla } 24609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 24611f40158dSVaclav Hapla PetscCallMPI(MPI_Comm_size(comm, &size)); 2462157edd7aSVaclav Hapla 24631f40158dSVaclav Hapla /* Calculate leaf array offsets */ 24649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets)); 2465157edd7aSVaclav Hapla leafArrayOffsets[0] = 0; 2466157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2467157edd7aSVaclav Hapla PetscInt nl; 2468157edd7aSVaclav Hapla 24699566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL)); 2470157edd7aSVaclav Hapla leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl; 2471157edd7aSVaclav Hapla } 2472157edd7aSVaclav Hapla nLeaves = leafArrayOffsets[nsfs]; 2473157edd7aSVaclav Hapla 24741f40158dSVaclav Hapla /* Calculate number of roots */ 24751f40158dSVaclav Hapla switch (rootMode) { 24761f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_SHARED: { 24771f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL)); 24781f40158dSVaclav Hapla if (PetscDefined(USE_DEBUG)) { 24791f40158dSVaclav Hapla for (s = 1; s < nsfs; s++) { 24801f40158dSVaclav Hapla PetscInt nr; 24811f40158dSVaclav Hapla 24821f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 24831f40158dSVaclav Hapla PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots); 24841f40158dSVaclav Hapla } 24851f40158dSVaclav Hapla } 24861f40158dSVaclav Hapla } break; 24871f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: { 24881f40158dSVaclav Hapla /* Calculate also global layout in this case */ 24891f40158dSVaclav Hapla PetscInt *nls; 24901f40158dSVaclav Hapla PetscLayout *lts; 24911f40158dSVaclav Hapla PetscInt **inds; 24921f40158dSVaclav Hapla PetscInt j; 24931f40158dSVaclav Hapla PetscInt rootOffset = 0; 24941f40158dSVaclav Hapla 24951f40158dSVaclav Hapla PetscCall(PetscCalloc3(nsfs, <s, nsfs, &nls, nsfs, &inds)); 24961f40158dSVaclav Hapla PetscCall(PetscLayoutCreate(comm, &glayout)); 24971f40158dSVaclav Hapla glayout->bs = 1; 24981f40158dSVaclav Hapla glayout->n = 0; 24991f40158dSVaclav Hapla glayout->N = 0; 25001f40158dSVaclav Hapla for (s = 0; s < nsfs; s++) { 25011f40158dSVaclav Hapla PetscCall(PetscSFGetGraphLayout(sfs[s], <s[s], &nls[s], NULL, &inds[s])); 25021f40158dSVaclav Hapla glayout->n += lts[s]->n; 25031f40158dSVaclav Hapla glayout->N += lts[s]->N; 25041f40158dSVaclav Hapla } 25051f40158dSVaclav Hapla PetscCall(PetscLayoutSetUp(glayout)); 25061f40158dSVaclav Hapla PetscCall(PetscMalloc1(nLeaves, &gremote)); 25071f40158dSVaclav Hapla for (s = 0, j = 0; s < nsfs; s++) { 25081f40158dSVaclav Hapla for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset; 25091f40158dSVaclav Hapla rootOffset += lts[s]->N; 25101f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(<s[s])); 25111f40158dSVaclav Hapla PetscCall(PetscFree(inds[s])); 25121f40158dSVaclav Hapla } 25131f40158dSVaclav Hapla PetscCall(PetscFree3(lts, nls, inds)); 25141f40158dSVaclav Hapla nRoots = glayout->N; 25151f40158dSVaclav Hapla } break; 25161f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_LOCAL: 25171f40158dSVaclav Hapla /* nRoots calculated later in this case */ 25181f40158dSVaclav Hapla break; 25191f40158dSVaclav Hapla default: 25201f40158dSVaclav Hapla SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode); 25211f40158dSVaclav Hapla } 25221f40158dSVaclav Hapla 2523157edd7aSVaclav Hapla if (!leafOffsets) { 2524157edd7aSVaclav Hapla all_ilocal_null = PETSC_TRUE; 2525157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2526157edd7aSVaclav Hapla const PetscInt *ilocal; 2527157edd7aSVaclav Hapla 25289566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL)); 2529157edd7aSVaclav Hapla if (ilocal) { 2530157edd7aSVaclav Hapla all_ilocal_null = PETSC_FALSE; 2531157edd7aSVaclav Hapla break; 2532157edd7aSVaclav Hapla } 2533157edd7aSVaclav Hapla } 2534157edd7aSVaclav Hapla PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL"); 2535157edd7aSVaclav Hapla } 2536157edd7aSVaclav Hapla 2537157edd7aSVaclav Hapla /* Renumber and concatenate local leaves */ 2538157edd7aSVaclav Hapla ilocal_new = NULL; 2539157edd7aSVaclav Hapla if (!all_ilocal_null) { 25409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &ilocal_new)); 2541157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1; 2542157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2543157edd7aSVaclav Hapla const PetscInt *ilocal; 25448e3a54c0SPierre Jolivet PetscInt *ilocal_l = PetscSafePointerPlusOffset(ilocal_new, leafArrayOffsets[s]); 2545157edd7aSVaclav Hapla PetscInt i, nleaves_l; 2546157edd7aSVaclav Hapla 25479566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL)); 2548157edd7aSVaclav Hapla for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s]; 2549157edd7aSVaclav Hapla } 2550157edd7aSVaclav Hapla } 2551157edd7aSVaclav Hapla 2552157edd7aSVaclav Hapla /* Renumber and concatenate remote roots */ 25531f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) { 25541f40158dSVaclav Hapla PetscInt rootOffset = 0; 25551f40158dSVaclav Hapla 25569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &iremote_new)); 2557157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) { 2558157edd7aSVaclav Hapla iremote_new[i].rank = -1; 2559157edd7aSVaclav Hapla iremote_new[i].index = -1; 2560157edd7aSVaclav Hapla } 2561157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2562157edd7aSVaclav Hapla PetscInt i, nl, nr; 2563157edd7aSVaclav Hapla PetscSF tmp_sf; 2564157edd7aSVaclav Hapla const PetscSFNode *iremote; 2565157edd7aSVaclav Hapla PetscSFNode *tmp_rootdata; 25668e3a54c0SPierre Jolivet PetscSFNode *tmp_leafdata = PetscSafePointerPlusOffset(iremote_new, leafArrayOffsets[s]); 2567157edd7aSVaclav Hapla 25689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote)); 25699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &tmp_sf)); 2570157edd7aSVaclav Hapla /* create helper SF with contiguous leaves */ 25719566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 25729566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(tmp_sf)); 25739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nr, &tmp_rootdata)); 25741f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { 2575157edd7aSVaclav Hapla for (i = 0; i < nr; i++) { 25761f40158dSVaclav Hapla tmp_rootdata[i].index = i + rootOffset; 2577157edd7aSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 2578157edd7aSVaclav Hapla } 25791f40158dSVaclav Hapla rootOffset += nr; 25801f40158dSVaclav Hapla } else { 25811f40158dSVaclav Hapla for (i = 0; i < nr; i++) { 25821f40158dSVaclav Hapla tmp_rootdata[i].index = i; 25831f40158dSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 25841f40158dSVaclav Hapla } 25851f40158dSVaclav Hapla } 25869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 25879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 25889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tmp_sf)); 25899566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp_rootdata)); 2590157edd7aSVaclav Hapla } 2591aa624791SPierre Jolivet if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) nRoots = rootOffset; // else nRoots already calculated above 2592157edd7aSVaclav Hapla 2593157edd7aSVaclav Hapla /* Build the new SF */ 25949566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 25959566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER)); 25961f40158dSVaclav Hapla } else { 25971f40158dSVaclav Hapla /* Build the new SF */ 25981f40158dSVaclav Hapla PetscCall(PetscSFCreate(comm, newsf)); 25991f40158dSVaclav Hapla PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote)); 26001f40158dSVaclav Hapla } 26019566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(*newsf)); 26021f40158dSVaclav Hapla PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view")); 26031f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(&glayout)); 26041f40158dSVaclav Hapla PetscCall(PetscFree(gremote)); 26059566063dSJacob Faibussowitsch PetscCall(PetscFree(leafArrayOffsets)); 26063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2607157edd7aSVaclav Hapla } 2608