xref: /petsc/src/vec/is/sf/interface/sf.c (revision fccb18fbb4825433b897d8c2cb64f0bcfabccc52)
1 #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/
2 #include <petscctable.h>
3 
4 #if defined(PETSC_USE_DEBUG)
5 #  define PetscSFCheckGraphSet(sf,arg) do {                          \
6     if (PetscUnlikely(!(sf)->graphset))                              \
7       SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \
8   } while (0)
9 #else
10 #  define PetscSFCheckGraphSet(sf,arg) do {} while (0)
11 #endif
12 
13 const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0};
14 
15 /*@
16    PetscSFCreate - create a star forest communication context
17 
18    Collective on MPI_Comm
19 
20    Input Arguments:
21 .  comm - communicator on which the star forest will operate
22 
23    Output Arguments:
24 .  sf - new star forest context
25 
26    Level: intermediate
27 
28 .seealso: PetscSFSetGraph(), PetscSFDestroy()
29 @*/
30 PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf)
31 {
32   PetscErrorCode ierr;
33   PetscSF        b;
34 
35   PetscFunctionBegin;
36   PetscValidPointer(sf,2);
37   ierr = PetscSFInitializePackage();CHKERRQ(ierr);
38 
39   ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr);
40 
41   b->nroots    = -1;
42   b->nleaves   = -1;
43   b->minleaf   = PETSC_MAX_INT;
44   b->maxleaf   = PETSC_MIN_INT;
45   b->nranks    = -1;
46   b->rankorder = PETSC_TRUE;
47   b->ingroup   = MPI_GROUP_NULL;
48   b->outgroup  = MPI_GROUP_NULL;
49   b->graphset  = PETSC_FALSE;
50 
51   *sf = b;
52   PetscFunctionReturn(0);
53 }
54 
55 /*@
56    PetscSFReset - Reset a star forest so that different sizes or neighbors can be used
57 
58    Collective
59 
60    Input Arguments:
61 .  sf - star forest
62 
63    Level: advanced
64 
65 .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy()
66 @*/
67 PetscErrorCode PetscSFReset(PetscSF sf)
68 {
69   PetscErrorCode ierr;
70 
71   PetscFunctionBegin;
72   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
73   if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);}
74   sf->nroots   = -1;
75   sf->nleaves  = -1;
76   sf->minleaf  = PETSC_MAX_INT;
77   sf->maxleaf  = PETSC_MIN_INT;
78   sf->mine     = NULL;
79   sf->remote   = NULL;
80   sf->graphset = PETSC_FALSE;
81   ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr);
82   ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr);
83   sf->nranks = -1;
84   ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr);
85   sf->degreeknown = PETSC_FALSE;
86   ierr = PetscFree(sf->degree);CHKERRQ(ierr);
87   if (sf->ingroup  != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);}
88   if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);}
89   ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr);
90   sf->setupcalled = PETSC_FALSE;
91   PetscFunctionReturn(0);
92 }
93 
94 /*@C
95    PetscSFSetType - Set the PetscSF communication implementation
96 
97    Collective on PetscSF
98 
99    Input Parameters:
100 +  sf - the PetscSF context
101 -  type - a known method
102 
103    Options Database Key:
104 .  -sf_type <type> - Sets the method; use -help for a list
105    of available methods (for instance, window, pt2pt, neighbor)
106 
107    Notes:
108    See "include/petscsf.h" for available methods (for instance)
109 +    PETSCSFWINDOW - MPI-2/3 one-sided
110 -    PETSCSFBASIC - basic implementation using MPI-1 two-sided
111 
112   Level: intermediate
113 
114 .keywords: PetscSF, set, type
115 
116 .seealso: PetscSFType, PetscSFCreate()
117 @*/
118 PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type)
119 {
120   PetscErrorCode ierr,(*r)(PetscSF);
121   PetscBool      match;
122 
123   PetscFunctionBegin;
124   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
125   PetscValidCharPointer(type,2);
126 
127   ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr);
128   if (match) PetscFunctionReturn(0);
129 
130   ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr);
131   if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type);
132   /* Destroy the previous PetscSF implementation context */
133   if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);}
134   ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr);
135   ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr);
136   ierr = (*r)(sf);CHKERRQ(ierr);
137   PetscFunctionReturn(0);
138 }
139 
140 /*@C
141   PetscSFGetType - Get the PetscSF communication implementation
142 
143   Not Collective
144 
145   Input Parameter:
146 . sf  - the PetscSF context
147 
148   Output Parameter:
149 . type - the PetscSF type name
150 
151   Level: intermediate
152 
153 .keywords: PetscSF, get, type
154 .seealso: PetscSFSetType(), PetscSFCreate()
155 @*/
156 PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type)
157 {
158   PetscFunctionBegin;
159   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1);
160   PetscValidPointer(type,2);
161   *type = ((PetscObject)sf)->type_name;
162   PetscFunctionReturn(0);
163 }
164 
165 /*@
166    PetscSFDestroy - destroy star forest
167 
168    Collective
169 
170    Input Arguments:
171 .  sf - address of star forest
172 
173    Level: intermediate
174 
175 .seealso: PetscSFCreate(), PetscSFReset()
176 @*/
177 PetscErrorCode PetscSFDestroy(PetscSF *sf)
178 {
179   PetscErrorCode ierr;
180 
181   PetscFunctionBegin;
182   if (!*sf) PetscFunctionReturn(0);
183   PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1);
184   if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);}
185   ierr = PetscSFReset(*sf);CHKERRQ(ierr);
186   if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);}
187   ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr);
188   PetscFunctionReturn(0);
189 }
190 
191 /*@
192    PetscSFSetUp - set up communication structures
193 
194    Collective
195 
196    Input Arguments:
197 .  sf - star forest communication object
198 
199    Level: beginner
200 
201 .seealso: PetscSFSetFromOptions(), PetscSFSetType()
202 @*/
203 PetscErrorCode PetscSFSetUp(PetscSF sf)
204 {
205   PetscErrorCode ierr;
206 
207   PetscFunctionBegin;
208   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
209   PetscSFCheckGraphSet(sf,1);
210   if (sf->setupcalled) PetscFunctionReturn(0);
211   if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);}
212   ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
213   if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);}
214   ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
215   sf->setupcalled = PETSC_TRUE;
216   PetscFunctionReturn(0);
217 }
218 
219 /*@
220    PetscSFSetFromOptions - set PetscSF options using the options database
221 
222    Logically Collective
223 
224    Input Arguments:
225 .  sf - star forest
226 
227    Options Database Keys:
228 +  -sf_type - implementation type, see PetscSFSetType()
229 -  -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise
230 
231    Level: intermediate
232 
233 .keywords: KSP, set, from, options, database
234 
235 .seealso: PetscSFWindowSetSyncType()
236 @*/
237 PetscErrorCode PetscSFSetFromOptions(PetscSF sf)
238 {
239   PetscSFType    deft;
240   char           type[256];
241   PetscErrorCode ierr;
242   PetscBool      flg;
243 
244   PetscFunctionBegin;
245   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
246   ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr);
247   deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC;
248   ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr);
249   ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr);
250   ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr);
251   if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);}
252   ierr = PetscOptionsEnd();CHKERRQ(ierr);
253   PetscFunctionReturn(0);
254 }
255 
256 /*@
257    PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order
258 
259    Logically Collective
260 
261    Input Arguments:
262 +  sf - star forest
263 -  flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic)
264 
265    Level: advanced
266 
267 .seealso: PetscSFGatherBegin(), PetscSFScatterBegin()
268 @*/
269 PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg)
270 {
271 
272   PetscFunctionBegin;
273   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
274   PetscValidLogicalCollectiveBool(sf,flg,2);
275   if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()");
276   sf->rankorder = flg;
277   PetscFunctionReturn(0);
278 }
279 
280 /*@
281    PetscSFSetGraph - Set a parallel star forest
282 
283    Collective
284 
285    Input Arguments:
286 +  sf - star forest
287 .  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
288 .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
289 .  ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage
290 .  localmode - copy mode for ilocal
291 .  iremote - remote locations of root vertices for each leaf on the current process
292 -  remotemode - copy mode for iremote
293 
294    Level: intermediate
295 
296    Notes:
297     In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode
298 
299    Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they
300    encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not
301    needed
302 
303 .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph()
304 @*/
305 PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode)
306 {
307   PetscErrorCode ierr;
308 
309   PetscFunctionBegin;
310   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
311   if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4);
312   if (nleaves > 0) PetscValidPointer(iremote,6);
313   if (nroots  < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots);
314   if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves);
315 
316   ierr = PetscSFReset(sf);CHKERRQ(ierr);
317   ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
318 
319   sf->nroots  = nroots;
320   sf->nleaves = nleaves;
321 
322   if (nleaves && ilocal) {
323     PetscInt i;
324     PetscInt minleaf = PETSC_MAX_INT;
325     PetscInt maxleaf = PETSC_MIN_INT;
326     int      contiguous = 1;
327     for (i=0; i<nleaves; i++) {
328       minleaf = PetscMin(minleaf,ilocal[i]);
329       maxleaf = PetscMax(maxleaf,ilocal[i]);
330       contiguous &= (ilocal[i] == i);
331     }
332     sf->minleaf = minleaf;
333     sf->maxleaf = maxleaf;
334     if (contiguous) {
335       if (localmode == PETSC_OWN_POINTER) {
336         ierr = PetscFree(ilocal);CHKERRQ(ierr);
337       }
338       ilocal = NULL;
339     }
340   } else {
341     sf->minleaf = 0;
342     sf->maxleaf = nleaves - 1;
343   }
344 
345   if (ilocal) {
346     switch (localmode) {
347     case PETSC_COPY_VALUES:
348       ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr);
349       ierr = PetscMemcpy(sf->mine_alloc,ilocal,nleaves*sizeof(*ilocal));CHKERRQ(ierr);
350       sf->mine = sf->mine_alloc;
351       break;
352     case PETSC_OWN_POINTER:
353       sf->mine_alloc = (PetscInt*)ilocal;
354       sf->mine       = sf->mine_alloc;
355       break;
356     case PETSC_USE_POINTER:
357       sf->mine_alloc = NULL;
358       sf->mine       = (PetscInt*)ilocal;
359       break;
360     default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode");
361     }
362   }
363 
364   switch (remotemode) {
365   case PETSC_COPY_VALUES:
366     ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr);
367     ierr = PetscMemcpy(sf->remote_alloc,iremote,nleaves*sizeof(*iremote));CHKERRQ(ierr);
368     sf->remote = sf->remote_alloc;
369     break;
370   case PETSC_OWN_POINTER:
371     sf->remote_alloc = (PetscSFNode*)iremote;
372     sf->remote       = sf->remote_alloc;
373     break;
374   case PETSC_USE_POINTER:
375     sf->remote_alloc = NULL;
376     sf->remote       = (PetscSFNode*)iremote;
377     break;
378   default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode");
379   }
380 
381   ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
382   sf->graphset = PETSC_TRUE;
383   PetscFunctionReturn(0);
384 }
385 
386 /*@
387    PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map
388 
389    Collective
390 
391    Input Arguments:
392 .  sf - star forest to invert
393 
394    Output Arguments:
395 .  isf - inverse of sf
396 
397    Level: advanced
398 
399    Notes:
400    All roots must have degree 1.
401 
402    The local space may be a permutation, but cannot be sparse.
403 
404 .seealso: PetscSFSetGraph()
405 @*/
406 PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf)
407 {
408   PetscErrorCode ierr;
409   PetscMPIInt    rank;
410   PetscInt       i,nroots,nleaves,maxlocal,count,*newilocal;
411   const PetscInt *ilocal;
412   PetscSFNode    *roots,*leaves;
413 
414   PetscFunctionBegin;
415   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
416   PetscSFCheckGraphSet(sf,1);
417   PetscValidPointer(isf,2);
418 
419   ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr);
420   maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
421 
422   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
423   ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr);
424   for (i=0; i<maxlocal; i++) {
425     leaves[i].rank  = rank;
426     leaves[i].index = i;
427   }
428   for (i=0; i <nroots; i++) {
429     roots[i].rank  = -1;
430     roots[i].index = -1;
431   }
432   ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
433   ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
434 
435   /* Check whether our leaves are sparse */
436   for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++;
437   if (count == nroots) newilocal = NULL;
438   else {                        /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */
439     ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr);
440     for (i=0,count=0; i<nroots; i++) {
441       if (roots[i].rank >= 0) {
442         newilocal[count]   = i;
443         roots[count].rank  = roots[i].rank;
444         roots[count].index = roots[i].index;
445         count++;
446       }
447     }
448   }
449 
450   ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr);
451   ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr);
452   ierr = PetscFree2(roots,leaves);CHKERRQ(ierr);
453   PetscFunctionReturn(0);
454 }
455 
456 /*@
457    PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph
458 
459    Collective
460 
461    Input Arguments:
462 +  sf - communication object to duplicate
463 -  opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption)
464 
465    Output Arguments:
466 .  newsf - new communication object
467 
468    Level: beginner
469 
470 .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph()
471 @*/
472 PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf)
473 {
474   PetscSFType    type;
475   PetscErrorCode ierr;
476 
477   PetscFunctionBegin;
478   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
479   PetscValidLogicalCollectiveEnum(sf,opt,2);
480   PetscValidPointer(newsf,3);
481   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr);
482   ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
483   if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);}
484   if (opt == PETSCSF_DUPLICATE_GRAPH) {
485     PetscInt          nroots,nleaves;
486     const PetscInt    *ilocal;
487     const PetscSFNode *iremote;
488     PetscSFCheckGraphSet(sf,1);
489     ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
490     ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr);
491   }
492   if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);}
493   PetscFunctionReturn(0);
494 }
495 
496 /*@C
497    PetscSFGetGraph - Get the graph specifying a parallel star forest
498 
499    Not Collective
500 
501    Input Arguments:
502 .  sf - star forest
503 
504    Output Arguments:
505 +  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
506 .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
507 .  ilocal - locations of leaves in leafdata buffers
508 -  iremote - remote locations of root vertices for each leaf on the current process
509 
510    Notes:
511    We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet
512 
513    Level: intermediate
514 
515 .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph()
516 @*/
517 PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote)
518 {
519 
520   PetscFunctionBegin;
521   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
522   if (nroots) *nroots = sf->nroots;
523   if (nleaves) *nleaves = sf->nleaves;
524   if (ilocal) *ilocal = sf->mine;
525   if (iremote) *iremote = sf->remote;
526   PetscFunctionReturn(0);
527 }
528 
529 /*@
530    PetscSFGetLeafRange - Get the active leaf ranges
531 
532    Not Collective
533 
534    Input Arguments:
535 .  sf - star forest
536 
537    Output Arguments:
538 +  minleaf - minimum active leaf on this process
539 -  maxleaf - maximum active leaf on this process
540 
541    Level: developer
542 
543 .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph()
544 @*/
545 PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf)
546 {
547 
548   PetscFunctionBegin;
549   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
550   PetscSFCheckGraphSet(sf,1);
551   if (minleaf) *minleaf = sf->minleaf;
552   if (maxleaf) *maxleaf = sf->maxleaf;
553   PetscFunctionReturn(0);
554 }
555 
556 /*@C
557    PetscSFView - view a star forest
558 
559    Collective
560 
561    Input Arguments:
562 +  sf - star forest
563 -  viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD
564 
565    Level: beginner
566 
567 .seealso: PetscSFCreate(), PetscSFSetGraph()
568 @*/
569 PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer)
570 {
571   PetscErrorCode    ierr;
572   PetscBool         iascii;
573   PetscViewerFormat format;
574 
575   PetscFunctionBegin;
576   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
577   if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);}
578   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
579   PetscCheckSameComm(sf,1,viewer,2);
580   if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);}
581   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
582   if (iascii) {
583     PetscMPIInt rank;
584     PetscInt    ii,i,j;
585 
586     ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr);
587     ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
588     if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);}
589     if (!sf->graphset) {
590       ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr);
591       ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
592       PetscFunctionReturn(0);
593     }
594     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
595     ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
596     ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr);
597     for (i=0; i<sf->nleaves; i++) {
598       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr);
599     }
600     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
601     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
602     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
603       PetscMPIInt *tmpranks,*perm;
604       ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr);
605       ierr = PetscMemcpy(tmpranks,sf->ranks,sf->nranks*sizeof(tmpranks[0]));CHKERRQ(ierr);
606       for (i=0; i<sf->nranks; i++) perm[i] = i;
607       ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr);
608       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr);
609       for (ii=0; ii<sf->nranks; ii++) {
610         i = perm[ii];
611         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr);
612         for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) {
613           ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]    %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr);
614         }
615       }
616       ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr);
617     }
618     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
619     ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
620     ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
621   }
622   PetscFunctionReturn(0);
623 }
624 
625 /*@C
626    PetscSFGetRanks - Get ranks and number of vertices referenced by leaves on this process
627 
628    Not Collective
629 
630    Input Arguments:
631 .  sf - star forest
632 
633    Output Arguments:
634 +  nranks - number of ranks referenced by local part
635 .  ranks - array of ranks
636 .  roffset - offset in rmine/rremote for each rank (length nranks+1)
637 .  rmine - concatenated array holding local indices referencing each remote rank
638 -  rremote - concatenated array holding remote indices referenced for each remote rank
639 
640    Level: developer
641 
642 .seealso: PetscSFSetGraph()
643 @*/
644 PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote)
645 {
646 
647   PetscFunctionBegin;
648   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
649   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
650   if (nranks)  *nranks  = sf->nranks;
651   if (ranks)   *ranks   = sf->ranks;
652   if (roffset) *roffset = sf->roffset;
653   if (rmine)   *rmine   = sf->rmine;
654   if (rremote) *rremote = sf->rremote;
655   PetscFunctionReturn(0);
656 }
657 
658 /*@C
659    PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process
660 
661    Not Collective
662 
663    Input Arguments:
664 .  sf - star forest
665 
666    Output Arguments:
667 +  niranks - number of leaf ranks referencing roots on this process
668 .  iranks - array of ranks
669 .  ioffset - offset in irootloc for each rank (length niranks+1)
670 -  irootloc - concatenated array holding local indices of roots referenced by each leaf rank
671 
672    Level: developer
673 
674 .seealso: PetscSFGetRanks()
675 @*/
676 PetscErrorCode PetscSFGetLeafRanks(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc)
677 {
678   PetscErrorCode ierr;
679 
680   PetscFunctionBegin;
681   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
682   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
683   if (sf->ops->GetLeafRanks) {
684     ierr = (sf->ops->GetLeafRanks)(sf,niranks,iranks,ioffset,irootloc);CHKERRQ(ierr);
685   } else {
686     PetscSFType type;
687     ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
688     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type);
689   }
690   PetscFunctionReturn(0);
691 }
692 
693 static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) {
694   PetscInt i;
695   for (i=0; i<n; i++) {
696     if (needle == list[i]) return PETSC_TRUE;
697   }
698   return PETSC_FALSE;
699 }
700 
701 /*@C
702    PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations.
703 
704    Collective
705 
706    Input Arguments:
707 +  sf - PetscSF to set up; PetscSFSetGraph() must have been called
708 -  dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange)
709 
710    Level: developer
711 
712 .seealso: PetscSFGetRanks()
713 @*/
714 PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup)
715 {
716   PetscErrorCode     ierr;
717   PetscTable         table;
718   PetscTablePosition pos;
719   PetscMPIInt        size,groupsize,*groupranks;
720   PetscInt           i,*rcount,*ranks;
721 
722   PetscFunctionBegin;
723   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
724   PetscSFCheckGraphSet(sf,1);
725   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr);
726   ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr);
727   for (i=0; i<sf->nleaves; i++) {
728     /* Log 1-based rank */
729     ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr);
730   }
731   ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr);
732   ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr);
733   ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr);
734   ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr);
735   for (i=0; i<sf->nranks; i++) {
736     ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr);
737     ranks[i]--;             /* Convert back to 0-based */
738   }
739   ierr = PetscTableDestroy(&table);CHKERRQ(ierr);
740 
741   /* We expect that dgroup is reliably "small" while nranks could be large */
742   {
743     MPI_Group group = MPI_GROUP_NULL;
744     PetscMPIInt *dgroupranks;
745     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
746     ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr);
747     ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr);
748     ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr);
749     for (i=0; i<groupsize; i++) dgroupranks[i] = i;
750     if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);}
751     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
752     ierr = PetscFree(dgroupranks);CHKERRQ(ierr);
753   }
754 
755   /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */
756   for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) {
757     for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */
758       if (InList(ranks[i],groupsize,groupranks)) break;
759     }
760     for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */
761       if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break;
762     }
763     if (sf->ndranks < i) {                         /* Swap ranks[sf->ndranks] with ranks[i] */
764       PetscInt    tmprank,tmpcount;
765       tmprank = ranks[i];
766       tmpcount = rcount[i];
767       ranks[i] = ranks[sf->ndranks];
768       rcount[i] = rcount[sf->ndranks];
769       ranks[sf->ndranks] = tmprank;
770       rcount[sf->ndranks] = tmpcount;
771       sf->ndranks++;
772     }
773   }
774   ierr = PetscFree(groupranks);CHKERRQ(ierr);
775   ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr);
776   ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr);
777   sf->roffset[0] = 0;
778   for (i=0; i<sf->nranks; i++) {
779     ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr);
780     sf->roffset[i+1] = sf->roffset[i] + rcount[i];
781     rcount[i]        = 0;
782   }
783   for (i=0; i<sf->nleaves; i++) {
784     PetscInt irank;
785     /* Search for index of iremote[i].rank in sf->ranks */
786     ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr);
787     if (irank < 0) {
788       ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr);
789       if (irank >= 0) irank += sf->ndranks;
790     }
791     if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank);
792     sf->rmine[sf->roffset[irank] + rcount[irank]]   = sf->mine ? sf->mine[i] : i;
793     sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index;
794     rcount[irank]++;
795   }
796   ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr);
797   PetscFunctionReturn(0);
798 }
799 
800 /*@C
801    PetscSFGetGroups - gets incoming and outgoing process groups
802 
803    Collective
804 
805    Input Argument:
806 .  sf - star forest
807 
808    Output Arguments:
809 +  incoming - group of origin processes for incoming edges (leaves that reference my roots)
810 -  outgoing - group of destination processes for outgoing edges (roots that I reference)
811 
812    Level: developer
813 
814 .seealso: PetscSFGetWindow(), PetscSFRestoreWindow()
815 @*/
816 PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing)
817 {
818   PetscErrorCode ierr;
819   MPI_Group      group = MPI_GROUP_NULL;
820 
821   PetscFunctionBegin;
822   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining groups");
823   if (sf->ingroup == MPI_GROUP_NULL) {
824     PetscInt       i;
825     const PetscInt *indegree;
826     PetscMPIInt    rank,*outranks,*inranks;
827     PetscSFNode    *remote;
828     PetscSF        bgcount;
829 
830     /* Compute the number of incoming ranks */
831     ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr);
832     for (i=0; i<sf->nranks; i++) {
833       remote[i].rank  = sf->ranks[i];
834       remote[i].index = 0;
835     }
836     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr);
837     ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
838     ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr);
839     ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr);
840 
841     /* Enumerate the incoming ranks */
842     ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr);
843     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
844     for (i=0; i<sf->nranks; i++) outranks[i] = rank;
845     ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
846     ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
847     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
848     ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr);
849     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
850     ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr);
851     ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr);
852   }
853   *incoming = sf->ingroup;
854 
855   if (sf->outgroup == MPI_GROUP_NULL) {
856     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
857     ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr);
858     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
859   }
860   *outgoing = sf->outgroup;
861   PetscFunctionReturn(0);
862 }
863 
864 /*@
865    PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters
866 
867    Collective
868 
869    Input Argument:
870 .  sf - star forest that may contain roots with 0 or with more than 1 vertex
871 
872    Output Arguments:
873 .  multi - star forest with split roots, such that each root has degree exactly 1
874 
875    Level: developer
876 
877    Notes:
878 
879    In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi
880    directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming
881    edge, it is a candidate for future optimization that might involve its removal.
882 
883 .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin(), PetscSFComputeMultiRootOriginalNumbering()
884 @*/
885 PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi)
886 {
887   PetscErrorCode ierr;
888 
889   PetscFunctionBegin;
890   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
891   PetscValidPointer(multi,2);
892   if (sf->nroots < 0) {         /* Graph has not been set yet; why do we need this? */
893     ierr   = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
894     *multi = sf->multi;
895     PetscFunctionReturn(0);
896   }
897   if (!sf->multi) {
898     const PetscInt *indegree;
899     PetscInt       i,*inoffset,*outones,*outoffset,maxlocal;
900     PetscSFNode    *remote;
901     maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
902     ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr);
903     ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr);
904     ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr);
905     inoffset[0] = 0;
906     for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i];
907     for (i=0; i<maxlocal; i++) outones[i] = 1;
908     ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
909     ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
910     for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */
911 #if 0
912 #if defined(PETSC_USE_DEBUG)                                 /* Check that the expected number of increments occurred */
913     for (i=0; i<sf->nroots; i++) {
914       if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp");
915     }
916 #endif
917 #endif
918     ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr);
919     for (i=0; i<sf->nleaves; i++) {
920       remote[i].rank  = sf->remote[i].rank;
921       remote[i].index = outoffset[sf->mine ? sf->mine[i] : i];
922     }
923     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
924     ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
925     if (sf->rankorder) {        /* Sort the ranks */
926       PetscMPIInt rank;
927       PetscInt    *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree;
928       PetscSFNode *newremote;
929       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
930       for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]);
931       ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr);
932       for (i=0; i<maxlocal; i++) outranks[i] = rank;
933       ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
934       ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
935       /* Sort the incoming ranks at each vertex, build the inverse map */
936       for (i=0; i<sf->nroots; i++) {
937         PetscInt j;
938         for (j=0; j<indegree[i]; j++) tmpoffset[j] = j;
939         ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr);
940         for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j;
941       }
942       ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
943       ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
944       ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr);
945       for (i=0; i<sf->nleaves; i++) {
946         newremote[i].rank  = sf->remote[i].rank;
947         newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i];
948       }
949       ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
950       ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr);
951     }
952     ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr);
953   }
954   *multi = sf->multi;
955   PetscFunctionReturn(0);
956 }
957 
958 /*@C
959    PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices
960 
961    Collective
962 
963    Input Arguments:
964 +  sf - original star forest
965 .  nroots - number of roots to select on this process
966 -  selected - selected roots on this process
967 
968    Output Arguments:
969 .  newsf - new star forest
970 
971    Level: advanced
972 
973    Note:
974    To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can
975    be done by calling PetscSFGetGraph().
976 
977 .seealso: PetscSFSetGraph(), PetscSFGetGraph()
978 @*/
979 PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nroots,const PetscInt *selected,PetscSF *newsf)
980 {
981   PetscInt      *rootdata, *leafdata, *ilocal;
982   PetscSFNode   *iremote;
983   PetscInt       leafsize = 0, nleaves = 0, n, i;
984   PetscErrorCode ierr;
985 
986   PetscFunctionBegin;
987   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
988   PetscSFCheckGraphSet(sf,1);
989   if (nroots) PetscValidPointer(selected,3);
990   PetscValidPointer(newsf,4);
991   if (sf->mine) for (i = 0; i < sf->nleaves; ++i) {leafsize = PetscMax(leafsize, sf->mine[i]+1);}
992   else leafsize = sf->nleaves;
993   ierr = PetscCalloc2(sf->nroots,&rootdata,leafsize,&leafdata);CHKERRQ(ierr);
994   for (i=0; i<nroots; ++i) rootdata[selected[i]] = 1;
995   ierr = PetscSFBcastBegin(sf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr);
996   ierr = PetscSFBcastEnd(sf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr);
997   for (i = 0; i < leafsize; ++i) nleaves += leafdata[i];
998   ierr = PetscMalloc1(nleaves,&ilocal);CHKERRQ(ierr);
999   ierr = PetscMalloc1(nleaves,&iremote);CHKERRQ(ierr);
1000   for (i = 0, n = 0; i < sf->nleaves; ++i) {
1001     const PetscInt lidx = sf->mine ? sf->mine[i] : i;
1002 
1003     if (leafdata[lidx]) {
1004       ilocal[n]        = lidx;
1005       iremote[n].rank  = sf->remote[i].rank;
1006       iremote[n].index = sf->remote[i].index;
1007       ++n;
1008     }
1009   }
1010   if (n != nleaves) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "There is a size mismatch in the SF embedding, %d != %d", n, nleaves);
1011   ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,newsf);CHKERRQ(ierr);
1012   ierr = PetscSFSetGraph(*newsf,sf->nroots,nleaves,ilocal,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
1013   ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr);
1014   PetscFunctionReturn(0);
1015 }
1016 
1017 /*@C
1018   PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices
1019 
1020   Collective
1021 
1022   Input Arguments:
1023 + sf - original star forest
1024 . nleaves - number of leaves to select on this process
1025 - selected - selected leaves on this process
1026 
1027   Output Arguments:
1028 .  newsf - new star forest
1029 
1030   Level: advanced
1031 
1032 .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph()
1033 @*/
1034 PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nleaves, const PetscInt *selected, PetscSF *newsf)
1035 {
1036   PetscSFNode   *iremote;
1037   PetscInt      *ilocal;
1038   PetscInt       i;
1039   PetscErrorCode ierr;
1040 
1041   PetscFunctionBegin;
1042   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
1043   PetscSFCheckGraphSet(sf, 1);
1044   if (nleaves) PetscValidPointer(selected, 3);
1045   PetscValidPointer(newsf, 4);
1046   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
1047   ierr = PetscMalloc1(nleaves, &iremote);CHKERRQ(ierr);
1048   for (i = 0; i < nleaves; ++i) {
1049     const PetscInt l = selected[i];
1050 
1051     ilocal[i]        = sf->mine ? sf->mine[l] : l;
1052     iremote[i].rank  = sf->remote[l].rank;
1053     iremote[i].index = sf->remote[l].index;
1054   }
1055   ierr = PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, newsf);CHKERRQ(ierr);
1056   ierr = PetscSFSetGraph(*newsf, sf->nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1057   PetscFunctionReturn(0);
1058 }
1059 
1060 /*@C
1061    PetscSFBcastBegin - begin pointwise broadcast to be concluded with call to PetscSFBcastEnd()
1062 
1063    Collective on PetscSF
1064 
1065    Input Arguments:
1066 +  sf - star forest on which to communicate
1067 .  unit - data type associated with each node
1068 -  rootdata - buffer to broadcast
1069 
1070    Output Arguments:
1071 .  leafdata - buffer to update with values from each leaf's respective root
1072 
1073    Level: intermediate
1074 
1075 .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFView(), PetscSFBcastEnd(), PetscSFReduceBegin()
1076 @*/
1077 PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata)
1078 {
1079   PetscErrorCode ierr;
1080 
1081   PetscFunctionBegin;
1082   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1083   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1084   ierr = PetscLogEventBegin(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr);
1085   ierr = (*sf->ops->BcastBegin)(sf,unit,rootdata,leafdata);CHKERRQ(ierr);
1086   ierr = PetscLogEventEnd(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr);
1087   PetscFunctionReturn(0);
1088 }
1089 
1090 /*@C
1091    PetscSFBcastEnd - end a broadcast operation started with PetscSFBcastBegin()
1092 
1093    Collective
1094 
1095    Input Arguments:
1096 +  sf - star forest
1097 .  unit - data type
1098 -  rootdata - buffer to broadcast
1099 
1100    Output Arguments:
1101 .  leafdata - buffer to update with values from each leaf's respective root
1102 
1103    Level: intermediate
1104 
1105 .seealso: PetscSFSetGraph(), PetscSFReduceEnd()
1106 @*/
1107 PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata)
1108 {
1109   PetscErrorCode ierr;
1110 
1111   PetscFunctionBegin;
1112   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1113   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1114   ierr = PetscLogEventBegin(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr);
1115   ierr = (*sf->ops->BcastEnd)(sf,unit,rootdata,leafdata);CHKERRQ(ierr);
1116   ierr = PetscLogEventEnd(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr);
1117   PetscFunctionReturn(0);
1118 }
1119 
1120 /*@C
1121    PetscSFBcastAndOpBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to PetscSFBcastAndOpEnd()
1122 
1123    Collective on PetscSF
1124 
1125    Input Arguments:
1126 +  sf - star forest on which to communicate
1127 .  unit - data type associated with each node
1128 .  rootdata - buffer to broadcast
1129 -  op - operation to use for reduction
1130 
1131    Output Arguments:
1132 .  leafdata - buffer to be reduced with values from each leaf's respective root
1133 
1134    Level: intermediate
1135 
1136 .seealso: PetscSFBcastAndOpEnd(), PetscSFBcastBegin(), PetscSFBcastEnd()
1137 @*/
1138 PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op)
1139 {
1140   PetscErrorCode ierr;
1141 
1142   PetscFunctionBegin;
1143   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1144   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1145   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1146   ierr = (*sf->ops->BcastAndOpBegin)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr);
1147   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1148   PetscFunctionReturn(0);
1149 }
1150 
1151 /*@C
1152    PetscSFBcastAndOpEnd - end a broadcast & reduce operation started with PetscSFBcastAndOpBegin()
1153 
1154    Collective
1155 
1156    Input Arguments:
1157 +  sf - star forest
1158 .  unit - data type
1159 .  rootdata - buffer to broadcast
1160 -  op - operation to use for reduction
1161 
1162    Output Arguments:
1163 .  leafdata - buffer to be reduced with values from each leaf's respective root
1164 
1165    Level: intermediate
1166 
1167 .seealso: PetscSFSetGraph(), PetscSFReduceEnd()
1168 @*/
1169 PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op)
1170 {
1171   PetscErrorCode ierr;
1172 
1173   PetscFunctionBegin;
1174   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1175   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1176   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1177   ierr = (*sf->ops->BcastAndOpEnd)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr);
1178   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1179   PetscFunctionReturn(0);
1180 }
1181 
1182 /*@C
1183    PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd()
1184 
1185    Collective
1186 
1187    Input Arguments:
1188 +  sf - star forest
1189 .  unit - data type
1190 .  leafdata - values to reduce
1191 -  op - reduction operation
1192 
1193    Output Arguments:
1194 .  rootdata - result of reduction of values from all leaves of each root
1195 
1196    Level: intermediate
1197 
1198 .seealso: PetscSFBcastBegin()
1199 @*/
1200 PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
1201 {
1202   PetscErrorCode ierr;
1203 
1204   PetscFunctionBegin;
1205   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1206   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1207   ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
1208   ierr = (sf->ops->ReduceBegin)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr);
1209   ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
1210   PetscFunctionReturn(0);
1211 }
1212 
1213 /*@C
1214    PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin()
1215 
1216    Collective
1217 
1218    Input Arguments:
1219 +  sf - star forest
1220 .  unit - data type
1221 .  leafdata - values to reduce
1222 -  op - reduction operation
1223 
1224    Output Arguments:
1225 .  rootdata - result of reduction of values from all leaves of each root
1226 
1227    Level: intermediate
1228 
1229 .seealso: PetscSFSetGraph(), PetscSFBcastEnd()
1230 @*/
1231 PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
1232 {
1233   PetscErrorCode ierr;
1234 
1235   PetscFunctionBegin;
1236   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1237   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1238   ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
1239   ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr);
1240   ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
1241   PetscFunctionReturn(0);
1242 }
1243 
1244 /*@C
1245    PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd()
1246 
1247    Collective
1248 
1249    Input Arguments:
1250 .  sf - star forest
1251 
1252    Output Arguments:
1253 .  degree - degree of each root vertex
1254 
1255    Level: advanced
1256 
1257    Notes:
1258    The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it.
1259 
1260 .seealso: PetscSFGatherBegin()
1261 @*/
1262 PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree)
1263 {
1264   PetscErrorCode ierr;
1265 
1266   PetscFunctionBegin;
1267   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1268   PetscSFCheckGraphSet(sf,1);
1269   PetscValidPointer(degree,2);
1270   if (!sf->degreeknown) {
1271     PetscInt i, nroots = sf->nroots, maxlocal = sf->maxleaf+1;  /* TODO: We should use PetscSFGetLeafRange() */
1272     if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested.");
1273     ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr);
1274     ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */
1275     for (i=0; i<nroots; i++) sf->degree[i] = 0;
1276     for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1;
1277     ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr);
1278   }
1279   *degree = NULL;
1280   PetscFunctionReturn(0);
1281 }
1282 
1283 /*@C
1284    PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin()
1285 
1286    Collective
1287 
1288    Input Arguments:
1289 .  sf - star forest
1290 
1291    Output Arguments:
1292 .  degree - degree of each root vertex
1293 
1294    Level: developer
1295 
1296    Notes:
1297    The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it.
1298 
1299 .seealso:
1300 @*/
1301 PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree)
1302 {
1303   PetscErrorCode ierr;
1304 
1305   PetscFunctionBegin;
1306   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1307   PetscSFCheckGraphSet(sf,1);
1308   PetscValidPointer(degree,2);
1309   if (!sf->degreeknown) {
1310     if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()");
1311     ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr);
1312     ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr);
1313     sf->degreeknown = PETSC_TRUE;
1314   }
1315   *degree = sf->degree;
1316   PetscFunctionReturn(0);
1317 }
1318 
1319 
1320 /*@C
1321    PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by PetscSFGetMultiSF()).
1322    Each multi-root is assigned index of the corresponding original root.
1323 
1324    Collective
1325 
1326    Input Arguments:
1327 +  sf - star forest
1328 -  degree - degree of each root vertex, computed with PetscSFComputeDegreeBegin()/PetscSFComputeDegreeEnd()
1329 
1330    Output Arguments:
1331 +  nMultiRoots - (optional) number of multi-roots (roots of multi-SF)
1332 -  multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots
1333 
1334    Level: developer
1335 
1336    Notes:
1337    The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with PetscFree() when no longer needed.
1338 
1339 .seealso: PetscSFComputeDegreeBegin(), PetscSFComputeDegreeEnd(), PetscSFGetMultiSF()
1340 @*/
1341 PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[])
1342 {
1343   PetscSF             msf;
1344   PetscInt            i, j, k, nroots, nmroots;
1345   PetscErrorCode      ierr;
1346 
1347   PetscFunctionBegin;
1348   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1349   ierr = PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1350   if (nroots) PetscValidIntPointer(degree,2);
1351   if (nMultiRoots) PetscValidIntPointer(nMultiRoots,3);
1352   PetscValidPointer(multiRootsOrigNumbering,4);
1353   ierr = PetscSFGetMultiSF(sf,&msf);CHKERRQ(ierr);
1354   ierr = PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL);CHKERRQ(ierr);
1355   ierr = PetscMalloc1(nmroots, multiRootsOrigNumbering);CHKERRQ(ierr);
1356   for (i=0,j=0,k=0; i<nroots; i++) {
1357     if (!degree[i]) continue;
1358     for (j=0; j<degree[i]; j++,k++) {
1359       (*multiRootsOrigNumbering)[k] = i;
1360     }
1361   }
1362 #if defined(PETSC_USE_DEBUG)
1363   if (PetscUnlikely(k != nmroots)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"sanity check fail");
1364 #endif
1365   if (nMultiRoots) *nMultiRoots = nmroots;
1366   PetscFunctionReturn(0);
1367 }
1368 
1369 /*@C
1370    PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd()
1371 
1372    Collective
1373 
1374    Input Arguments:
1375 +  sf - star forest
1376 .  unit - data type
1377 .  leafdata - leaf values to use in reduction
1378 -  op - operation to use for reduction
1379 
1380    Output Arguments:
1381 +  rootdata - root values to be updated, input state is seen by first process to perform an update
1382 -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1383 
1384    Level: advanced
1385 
1386    Note:
1387    The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process
1388    might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is
1389    not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as
1390    integers.
1391 
1392 .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph()
1393 @*/
1394 PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
1395 {
1396   PetscErrorCode ierr;
1397 
1398   PetscFunctionBegin;
1399   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1400   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1401   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1402   ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr);
1403   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1404   PetscFunctionReturn(0);
1405 }
1406 
1407 /*@C
1408    PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value
1409 
1410    Collective
1411 
1412    Input Arguments:
1413 +  sf - star forest
1414 .  unit - data type
1415 .  leafdata - leaf values to use in reduction
1416 -  op - operation to use for reduction
1417 
1418    Output Arguments:
1419 +  rootdata - root values to be updated, input state is seen by first process to perform an update
1420 -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1421 
1422    Level: advanced
1423 
1424 .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph()
1425 @*/
1426 PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
1427 {
1428   PetscErrorCode ierr;
1429 
1430   PetscFunctionBegin;
1431   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1432   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1433   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1434   ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr);
1435   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1436   PetscFunctionReturn(0);
1437 }
1438 
1439 /*@C
1440    PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd()
1441 
1442    Collective
1443 
1444    Input Arguments:
1445 +  sf - star forest
1446 .  unit - data type
1447 -  leafdata - leaf data to gather to roots
1448 
1449    Output Argument:
1450 .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
1451 
1452    Level: intermediate
1453 
1454 .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
1455 @*/
1456 PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
1457 {
1458   PetscErrorCode ierr;
1459   PetscSF        multi;
1460 
1461   PetscFunctionBegin;
1462   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1463   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1464   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
1465   ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
1466   PetscFunctionReturn(0);
1467 }
1468 
1469 /*@C
1470    PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin()
1471 
1472    Collective
1473 
1474    Input Arguments:
1475 +  sf - star forest
1476 .  unit - data type
1477 -  leafdata - leaf data to gather to roots
1478 
1479    Output Argument:
1480 .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
1481 
1482    Level: intermediate
1483 
1484 .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
1485 @*/
1486 PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
1487 {
1488   PetscErrorCode ierr;
1489   PetscSF        multi;
1490 
1491   PetscFunctionBegin;
1492   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1493   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1494   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
1495   ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
1496   PetscFunctionReturn(0);
1497 }
1498 
1499 /*@C
1500    PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd()
1501 
1502    Collective
1503 
1504    Input Arguments:
1505 +  sf - star forest
1506 .  unit - data type
1507 -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
1508 
1509    Output Argument:
1510 .  leafdata - leaf data to be update with personal data from each respective root
1511 
1512    Level: intermediate
1513 
1514 .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
1515 @*/
1516 PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
1517 {
1518   PetscErrorCode ierr;
1519   PetscSF        multi;
1520 
1521   PetscFunctionBegin;
1522   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1523   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1524   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
1525   ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
1526   PetscFunctionReturn(0);
1527 }
1528 
1529 /*@C
1530    PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin()
1531 
1532    Collective
1533 
1534    Input Arguments:
1535 +  sf - star forest
1536 .  unit - data type
1537 -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
1538 
1539    Output Argument:
1540 .  leafdata - leaf data to be update with personal data from each respective root
1541 
1542    Level: intermediate
1543 
1544 .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
1545 @*/
1546 PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
1547 {
1548   PetscErrorCode ierr;
1549   PetscSF        multi;
1550 
1551   PetscFunctionBegin;
1552   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1553   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1554   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
1555   ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
1556   PetscFunctionReturn(0);
1557 }
1558 
1559 /*@
1560   PetscSFCompose - Compose a new PetscSF equivalent to action to PetscSFs
1561 
1562   Input Parameters:
1563 + sfA - The first PetscSF
1564 - sfB - The second PetscSF
1565 
1566   Output Parameters:
1567 . sfBA - equvalent PetscSF for applying A then B
1568 
1569   Level: developer
1570 
1571 .seealso: PetscSF, PetscSFGetGraph(), PetscSFSetGraph()
1572 @*/
1573 PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA)
1574 {
1575   MPI_Comm           comm;
1576   const PetscSFNode *remotePointsA, *remotePointsB;
1577   PetscSFNode       *remotePointsBA;
1578   const PetscInt    *localPointsA, *localPointsB;
1579   PetscInt           numRootsA, numLeavesA, numRootsB, numLeavesB;
1580   PetscErrorCode     ierr;
1581 
1582   PetscFunctionBegin;
1583   PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1);
1584   PetscSFCheckGraphSet(sfA, 1);
1585   PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2);
1586   PetscSFCheckGraphSet(sfB, 2);
1587   PetscValidPointer(sfBA, 3);
1588   ierr = PetscObjectGetComm((PetscObject) sfA, &comm);CHKERRQ(ierr);
1589   ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr);
1590   ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr);
1591   ierr = PetscMalloc1(numLeavesB, &remotePointsBA);CHKERRQ(ierr);
1592   ierr = PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr);
1593   ierr = PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr);
1594   ierr = PetscSFCreate(comm, sfBA);CHKERRQ(ierr);
1595   ierr = PetscSFSetGraph(*sfBA, numRootsA, numLeavesB, localPointsB, PETSC_COPY_VALUES, remotePointsBA, PETSC_OWN_POINTER);CHKERRQ(ierr);
1596   PetscFunctionReturn(0);
1597 }
1598