1 static const char help[] = "Test star forest communication (PetscSF)\n\n"; 2 3 /* 4 Description: A star is a simple tree with one root and zero or more leaves. 5 A star forest is a union of disjoint stars. 6 Many common communication patterns can be expressed as updates of rootdata using leafdata and vice-versa. 7 This example creates a star forest, communicates values using the graph (see options for types of communication), views the graph, then destroys it. 8 */ 9 10 /* 11 Include petscsf.h so we can use PetscSF objects. Note that this automatically 12 includes petscsys.h. 13 */ 14 #include <petscsf.h> 15 #include <petscviewer.h> 16 17 /* like PetscSFView() but with alternative array of local indices */ 18 static PetscErrorCode PetscSFViewCustomLocals_Private(PetscSF sf, const PetscInt locals[], PetscViewer viewer) 19 { 20 const PetscSFNode *iremote; 21 PetscInt i, nroots, nleaves, nranks; 22 PetscMPIInt rank; 23 24 PetscFunctionBeginUser; 25 PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 26 PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 27 PetscCall(PetscSFGetRootRanks(sf, &nranks, NULL, NULL, NULL, NULL)); 28 PetscCall(PetscViewerASCIIPushTab(viewer)); 29 PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 30 PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, nroots, nleaves, nranks)); 31 for (i = 0; i < nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, locals[i], iremote[i].rank, iremote[i].index)); 32 PetscCall(PetscViewerFlush(viewer)); 33 PetscCall(PetscViewerASCIIPopTab(viewer)); 34 PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 35 PetscFunctionReturn(PETSC_SUCCESS); 36 } 37 38 int main(int argc, char **argv) 39 { 40 PetscInt i, bs = 2, nroots, nrootsalloc, nleaves, nleavesalloc, *mine, stride; 41 PetscSFNode *remote; 42 PetscMPIInt rank, size; 43 PetscSF sf, vsf; 44 PetscBool test_all, test_bcast, test_bcastop, test_reduce, test_degree, test_fetchandop, test_gather, test_scatter, test_embed, test_invert, test_sf_distribute, test_char, test_vector = PETSC_FALSE; 45 MPI_Op mop = MPI_OP_NULL; /* initialize to prevent compiler warnings with cxx_quad build */ 46 char opstring[256]; 47 PetscBool strflg; 48 49 PetscFunctionBeginUser; 50 PetscCall(PetscInitialize(&argc, &argv, (char *)0, help)); 51 PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank)); 52 PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size)); 53 54 PetscOptionsBegin(PETSC_COMM_WORLD, "", "PetscSF Test Options", "none"); 55 test_all = PETSC_FALSE; 56 PetscCall(PetscOptionsBool("-test_all", "Test all SF communications", "", test_all, &test_all, NULL)); 57 test_bcast = test_all; 58 PetscCall(PetscOptionsBool("-test_bcast", "Test broadcast", "", test_bcast, &test_bcast, NULL)); 59 test_bcastop = test_all; 60 PetscCall(PetscOptionsBool("-test_bcastop", "Test broadcast and reduce", "", test_bcastop, &test_bcastop, NULL)); 61 test_reduce = test_all; 62 PetscCall(PetscOptionsBool("-test_reduce", "Test reduction", "", test_reduce, &test_reduce, NULL)); 63 test_char = test_all; 64 PetscCall(PetscOptionsBool("-test_char", "Test signed char, unsigned char, and char", "", test_char, &test_char, NULL)); 65 mop = MPI_SUM; 66 PetscCall(PetscStrncpy(opstring, "sum", sizeof(opstring))); 67 PetscCall(PetscOptionsString("-test_op", "Designate which MPI_Op to use", "", opstring, opstring, sizeof(opstring), NULL)); 68 PetscCall(PetscStrcmp("sum", opstring, &strflg)); 69 if (strflg) mop = MPIU_SUM; 70 PetscCall(PetscStrcmp("prod", opstring, &strflg)); 71 if (strflg) mop = MPI_PROD; 72 PetscCall(PetscStrcmp("max", opstring, &strflg)); 73 if (strflg) mop = MPI_MAX; 74 PetscCall(PetscStrcmp("min", opstring, &strflg)); 75 if (strflg) mop = MPI_MIN; 76 PetscCall(PetscStrcmp("land", opstring, &strflg)); 77 if (strflg) mop = MPI_LAND; 78 PetscCall(PetscStrcmp("band", opstring, &strflg)); 79 if (strflg) mop = MPI_BAND; 80 PetscCall(PetscStrcmp("lor", opstring, &strflg)); 81 if (strflg) mop = MPI_LOR; 82 PetscCall(PetscStrcmp("bor", opstring, &strflg)); 83 if (strflg) mop = MPI_BOR; 84 PetscCall(PetscStrcmp("lxor", opstring, &strflg)); 85 if (strflg) mop = MPI_LXOR; 86 PetscCall(PetscStrcmp("bxor", opstring, &strflg)); 87 if (strflg) mop = MPI_BXOR; 88 test_degree = test_all; 89 PetscCall(PetscOptionsBool("-test_degree", "Test computation of vertex degree", "", test_degree, &test_degree, NULL)); 90 test_fetchandop = test_all; 91 PetscCall(PetscOptionsBool("-test_fetchandop", "Test atomic Fetch-And-Op", "", test_fetchandop, &test_fetchandop, NULL)); 92 test_gather = test_all; 93 PetscCall(PetscOptionsBool("-test_gather", "Test point gather", "", test_gather, &test_gather, NULL)); 94 test_scatter = test_all; 95 PetscCall(PetscOptionsBool("-test_scatter", "Test point scatter", "", test_scatter, &test_scatter, NULL)); 96 test_embed = test_all; 97 PetscCall(PetscOptionsBool("-test_embed", "Test point embed", "", test_embed, &test_embed, NULL)); 98 test_invert = test_all; 99 PetscCall(PetscOptionsBool("-test_invert", "Test point invert", "", test_invert, &test_invert, NULL)); 100 stride = 1; 101 PetscCall(PetscOptionsInt("-stride", "Stride for leaf and root data", "", stride, &stride, NULL)); 102 test_sf_distribute = PETSC_FALSE; 103 PetscCall(PetscOptionsBool("-test_sf_distribute", "Create an SF that 'distributes' to each process, like an alltoall", "", test_sf_distribute, &test_sf_distribute, NULL)); 104 PetscCall(PetscOptionsString("-test_op", "Designate which MPI_Op to use", "", opstring, opstring, sizeof(opstring), NULL)); 105 PetscCall(PetscOptionsInt("-bs", "Block size for vectorial SF", "", bs, &bs, NULL)); 106 PetscCall(PetscOptionsBool("-test_vector", "Run tests using the vectorial SF", "", test_vector, &test_vector, NULL)); 107 PetscOptionsEnd(); 108 109 if (test_sf_distribute) { 110 nroots = size; 111 nrootsalloc = size; 112 nleaves = size; 113 nleavesalloc = size; 114 mine = NULL; 115 PetscCall(PetscMalloc1(nleaves, &remote)); 116 for (i = 0; i < size; i++) { 117 remote[i].rank = i; 118 remote[i].index = rank; 119 } 120 } else { 121 nroots = 2 + (PetscInt)(rank == 0); 122 nrootsalloc = nroots * stride; 123 nleaves = 2 + (PetscInt)(rank > 0); 124 nleavesalloc = nleaves * stride; 125 mine = NULL; 126 if (stride > 1) { 127 PetscInt i; 128 129 PetscCall(PetscMalloc1(nleaves, &mine)); 130 for (i = 0; i < nleaves; i++) mine[i] = stride * i; 131 } 132 PetscCall(PetscMalloc1(nleaves, &remote)); 133 /* Left periodic neighbor */ 134 remote[0].rank = (rank + size - 1) % size; 135 remote[0].index = 1 * stride; 136 /* Right periodic neighbor */ 137 remote[1].rank = (rank + 1) % size; 138 remote[1].index = 0 * stride; 139 if (rank > 0) { /* All processes reference rank 0, index 1 */ 140 remote[2].rank = 0; 141 remote[2].index = 2 * stride; 142 } 143 } 144 145 /* Create a star forest for communication */ 146 PetscCall(PetscSFCreate(PETSC_COMM_WORLD, &sf)); 147 PetscCall(PetscSFSetFromOptions(sf)); 148 PetscCall(PetscSFSetGraph(sf, nrootsalloc, nleaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER)); 149 PetscCall(PetscSFSetUp(sf)); 150 151 /* We can also obtain a strided SF to communicate interleaved blocks of data */ 152 PetscCall(PetscSFCreateStridedSF(sf, bs, PETSC_DECIDE, PETSC_DECIDE, &vsf)); 153 if (test_vector) { /* perform all tests below using the vectorial SF */ 154 PetscSF t = sf; 155 156 sf = vsf; 157 vsf = t; 158 159 nroots *= bs; 160 nleaves *= bs; 161 nrootsalloc *= bs; 162 nleavesalloc *= bs; 163 } 164 PetscCall(PetscSFDestroy(&vsf)); 165 166 /* View graph, mostly useful for debugging purposes. */ 167 PetscCall(PetscViewerPushFormat(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_ASCII_INFO_DETAIL)); 168 PetscCall(PetscSFView(sf, PETSC_VIEWER_STDOUT_WORLD)); 169 PetscCall(PetscViewerPopFormat(PETSC_VIEWER_STDOUT_WORLD)); 170 171 if (test_bcast) { /* broadcast rootdata into leafdata */ 172 PetscInt *rootdata, *leafdata; 173 /* Allocate space for send and receive buffers. This example communicates PetscInt, but other types, including 174 * user-defined structures, could also be used. */ 175 PetscCall(PetscMalloc2(nrootsalloc, &rootdata, nleavesalloc, &leafdata)); 176 /* Set rootdata buffer to be broadcast */ 177 for (i = 0; i < nrootsalloc; i++) rootdata[i] = -1; 178 for (i = 0; i < nroots; i++) rootdata[i * stride] = 100 * (rank + 1) + i; 179 /* Initialize local buffer, these values are never used. */ 180 for (i = 0; i < nleavesalloc; i++) leafdata[i] = -1; 181 /* Broadcast entries from rootdata to leafdata. Computation or other communication can be performed between the begin and end calls. */ 182 PetscCall(PetscSFBcastBegin(sf, MPIU_INT, rootdata, leafdata, MPI_REPLACE)); 183 PetscCall(PetscSFBcastEnd(sf, MPIU_INT, rootdata, leafdata, MPI_REPLACE)); 184 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Bcast Rootdata\n")); 185 PetscCall(PetscIntView(nrootsalloc, rootdata, PETSC_VIEWER_STDOUT_WORLD)); 186 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Bcast Leafdata\n")); 187 PetscCall(PetscIntView(nleavesalloc, leafdata, PETSC_VIEWER_STDOUT_WORLD)); 188 PetscCall(PetscFree2(rootdata, leafdata)); 189 } 190 191 if (test_bcast && test_char) { /* Bcast with char */ 192 PetscInt len; 193 char buf[256]; 194 char *rootdata, *leafdata; 195 PetscCall(PetscMalloc2(nrootsalloc, &rootdata, nleavesalloc, &leafdata)); 196 /* Set rootdata buffer to be broadcast */ 197 for (i = 0; i < nrootsalloc; i++) rootdata[i] = '*'; 198 for (i = 0; i < nroots; i++) rootdata[i * stride] = 'A' + rank * 3 + i; /* rank is very small, so it is fine to compute a char */ 199 /* Initialize local buffer, these values are never used. */ 200 for (i = 0; i < nleavesalloc; i++) leafdata[i] = '?'; 201 202 PetscCall(PetscSFBcastBegin(sf, MPI_CHAR, rootdata, leafdata, MPI_REPLACE)); 203 PetscCall(PetscSFBcastEnd(sf, MPI_CHAR, rootdata, leafdata, MPI_REPLACE)); 204 205 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Bcast Rootdata in type of char\n")); 206 len = 0; 207 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 208 len += 5; 209 for (i = 0; i < nrootsalloc; i++) { 210 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5c", rootdata[i])); 211 len += 5; 212 } 213 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 214 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 215 216 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Bcast Leafdata in type of char\n")); 217 len = 0; 218 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 219 len += 5; 220 for (i = 0; i < nleavesalloc; i++) { 221 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5c", leafdata[i])); 222 len += 5; 223 } 224 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 225 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 226 227 PetscCall(PetscFree2(rootdata, leafdata)); 228 } 229 230 if (test_bcastop) { /* Reduce rootdata into leafdata */ 231 PetscInt *rootdata, *leafdata; 232 /* Allocate space for send and receive buffers. This example communicates PetscInt, but other types, including 233 * user-defined structures, could also be used. */ 234 PetscCall(PetscMalloc2(nrootsalloc, &rootdata, nleavesalloc, &leafdata)); 235 /* Set rootdata buffer to be broadcast */ 236 for (i = 0; i < nrootsalloc; i++) rootdata[i] = -1; 237 for (i = 0; i < nroots; i++) rootdata[i * stride] = 100 * (rank + 1) + i; 238 /* Set leaf values to reduce with */ 239 for (i = 0; i < nleavesalloc; i++) leafdata[i] = -10 * (rank + 1) - i; 240 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Pre-BcastAndOp Leafdata\n")); 241 PetscCall(PetscIntView(nleavesalloc, leafdata, PETSC_VIEWER_STDOUT_WORLD)); 242 /* Broadcast entries from rootdata to leafdata. Computation or other communication can be performed between the begin and end calls. */ 243 PetscCall(PetscSFBcastBegin(sf, MPIU_INT, rootdata, leafdata, mop)); 244 PetscCall(PetscSFBcastEnd(sf, MPIU_INT, rootdata, leafdata, mop)); 245 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## BcastAndOp Rootdata\n")); 246 PetscCall(PetscIntView(nrootsalloc, rootdata, PETSC_VIEWER_STDOUT_WORLD)); 247 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## BcastAndOp Leafdata\n")); 248 PetscCall(PetscIntView(nleavesalloc, leafdata, PETSC_VIEWER_STDOUT_WORLD)); 249 PetscCall(PetscFree2(rootdata, leafdata)); 250 } 251 252 if (test_reduce) { /* Reduce leafdata into rootdata */ 253 PetscInt *rootdata, *leafdata; 254 PetscCall(PetscMalloc2(nrootsalloc, &rootdata, nleavesalloc, &leafdata)); 255 /* Initialize rootdata buffer in which the result of the reduction will appear. */ 256 for (i = 0; i < nrootsalloc; i++) rootdata[i] = -1; 257 for (i = 0; i < nroots; i++) rootdata[i * stride] = 100 * (rank + 1) + i; 258 /* Set leaf values to reduce. */ 259 for (i = 0; i < nleavesalloc; i++) leafdata[i] = -1; 260 for (i = 0; i < nleaves; i++) leafdata[i * stride] = 1000 * (rank + 1) + 10 * i; 261 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Pre-Reduce Rootdata\n")); 262 PetscCall(PetscIntView(nrootsalloc, rootdata, PETSC_VIEWER_STDOUT_WORLD)); 263 /* Perform reduction. Computation or other communication can be performed between the begin and end calls. 264 * This example sums the values, but other MPI_Ops can be used (e.g MPI_MAX, MPI_PROD). */ 265 PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafdata, rootdata, mop)); 266 PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafdata, rootdata, mop)); 267 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Reduce Leafdata\n")); 268 PetscCall(PetscIntView(nleavesalloc, leafdata, PETSC_VIEWER_STDOUT_WORLD)); 269 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Reduce Rootdata\n")); 270 PetscCall(PetscIntView(nrootsalloc, rootdata, PETSC_VIEWER_STDOUT_WORLD)); 271 PetscCall(PetscFree2(rootdata, leafdata)); 272 } 273 274 if (test_reduce && test_char) { /* Reduce with signed char */ 275 PetscInt len; 276 char buf[256]; 277 signed char *rootdata, *leafdata; 278 PetscCall(PetscMalloc2(nrootsalloc, &rootdata, nleavesalloc, &leafdata)); 279 /* Initialize rootdata buffer in which the result of the reduction will appear. */ 280 for (i = 0; i < nrootsalloc; i++) rootdata[i] = -1; 281 for (i = 0; i < nroots; i++) rootdata[i * stride] = 10 * (rank + 1) + i; 282 /* Set leaf values to reduce. */ 283 for (i = 0; i < nleavesalloc; i++) leafdata[i] = -1; 284 for (i = 0; i < nleaves; i++) leafdata[i * stride] = 50 * (rank + 1) + 10 * i; 285 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Pre-Reduce Rootdata in type of signed char\n")); 286 287 len = 0; 288 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 289 len += 5; 290 for (i = 0; i < nrootsalloc; i++) { 291 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5d", rootdata[i])); 292 len += 5; 293 } 294 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 295 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 296 297 /* Using MPI_CHAR should trigger an error since MPI standard does not support reduction on MPI_CHAR. 298 Testing with -test_op max, one can see the sign does take effect in MPI_MAX. 299 */ 300 PetscCall(PetscSFReduceBegin(sf, MPI_SIGNED_CHAR, leafdata, rootdata, mop)); 301 PetscCall(PetscSFReduceEnd(sf, MPI_SIGNED_CHAR, leafdata, rootdata, mop)); 302 303 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Reduce Leafdata in type of signed char\n")); 304 len = 0; 305 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 306 len += 5; 307 for (i = 0; i < nleavesalloc; i++) { 308 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5d", leafdata[i])); 309 len += 5; 310 } 311 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 312 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 313 314 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Reduce Rootdata in type of signed char\n")); 315 len = 0; 316 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 317 len += 5; 318 for (i = 0; i < nrootsalloc; i++) { 319 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5d", rootdata[i])); 320 len += 5; 321 } 322 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 323 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 324 325 PetscCall(PetscFree2(rootdata, leafdata)); 326 } 327 328 if (test_reduce && test_char) { /* Reduce with unsigned char */ 329 PetscInt len; 330 char buf[256]; 331 unsigned char *rootdata, *leafdata; 332 PetscCall(PetscMalloc2(nrootsalloc, &rootdata, nleavesalloc, &leafdata)); 333 /* Initialize rootdata buffer in which the result of the reduction will appear. */ 334 for (i = 0; i < nrootsalloc; i++) rootdata[i] = 0; 335 for (i = 0; i < nroots; i++) rootdata[i * stride] = 10 * (rank + 1) + i; 336 /* Set leaf values to reduce. */ 337 for (i = 0; i < nleavesalloc; i++) leafdata[i] = 0; 338 for (i = 0; i < nleaves; i++) leafdata[i * stride] = 50 * (rank + 1) + 10 * i; 339 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Pre-Reduce Rootdata in type of unsigned char\n")); 340 341 len = 0; 342 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 343 len += 5; 344 for (i = 0; i < nrootsalloc; i++) { 345 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5u", rootdata[i])); 346 len += 5; 347 } 348 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 349 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 350 351 /* Using MPI_CHAR should trigger an error since MPI standard does not support reduction on MPI_CHAR. 352 Testing with -test_op max, one can see the sign does take effect in MPI_MAX. 353 */ 354 PetscCall(PetscSFReduceBegin(sf, MPI_UNSIGNED_CHAR, leafdata, rootdata, mop)); 355 PetscCall(PetscSFReduceEnd(sf, MPI_UNSIGNED_CHAR, leafdata, rootdata, mop)); 356 357 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Reduce Leafdata in type of unsigned char\n")); 358 len = 0; 359 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 360 len += 5; 361 for (i = 0; i < nleavesalloc; i++) { 362 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5u", leafdata[i])); 363 len += 5; 364 } 365 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 366 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 367 368 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Reduce Rootdata in type of unsigned char\n")); 369 len = 0; 370 PetscCall(PetscSNPrintf(buf, 256, "%4d:", rank)); 371 len += 5; 372 for (i = 0; i < nrootsalloc; i++) { 373 PetscCall(PetscSNPrintf(buf + len, 256 - len, "%5u", rootdata[i])); 374 len += 5; 375 } 376 PetscCall(PetscSynchronizedPrintf(PETSC_COMM_WORLD, "%s\n", buf)); 377 PetscCall(PetscSynchronizedFlush(PETSC_COMM_WORLD, PETSC_STDOUT)); 378 379 PetscCall(PetscFree2(rootdata, leafdata)); 380 } 381 382 if (test_degree) { 383 const PetscInt *degree; 384 PetscCall(PetscSFComputeDegreeBegin(sf, °ree)); 385 PetscCall(PetscSFComputeDegreeEnd(sf, °ree)); 386 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Root degrees\n")); 387 PetscCall(PetscIntView(nrootsalloc, degree, PETSC_VIEWER_STDOUT_WORLD)); 388 } 389 390 if (test_fetchandop) { 391 /* Cannot use text compare here because token ordering is not deterministic */ 392 PetscInt *leafdata, *leafupdate, *rootdata; 393 PetscCall(PetscMalloc3(nleavesalloc, &leafdata, nleavesalloc, &leafupdate, nrootsalloc, &rootdata)); 394 for (i = 0; i < nleavesalloc; i++) leafdata[i] = -1; 395 for (i = 0; i < nleaves; i++) leafdata[i * stride] = 1; 396 for (i = 0; i < nrootsalloc; i++) rootdata[i] = -1; 397 for (i = 0; i < nroots; i++) rootdata[i * stride] = 0; 398 PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, rootdata, leafdata, leafupdate, mop)); 399 PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, rootdata, leafdata, leafupdate, mop)); 400 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Rootdata (sum of 1 from each leaf)\n")); 401 PetscCall(PetscIntView(nrootsalloc, rootdata, PETSC_VIEWER_STDOUT_WORLD)); 402 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Leafupdate (value at roots prior to my atomic update)\n")); 403 PetscCall(PetscIntView(nleavesalloc, leafupdate, PETSC_VIEWER_STDOUT_WORLD)); 404 PetscCall(PetscFree3(leafdata, leafupdate, rootdata)); 405 } 406 407 if (test_gather) { 408 const PetscInt *degree; 409 PetscInt inedges, *indata, *outdata; 410 PetscCall(PetscSFComputeDegreeBegin(sf, °ree)); 411 PetscCall(PetscSFComputeDegreeEnd(sf, °ree)); 412 for (i = 0, inedges = 0; i < nrootsalloc; i++) inedges += degree[i]; 413 PetscCall(PetscMalloc2(inedges, &indata, nleavesalloc, &outdata)); 414 for (i = 0; i < nleavesalloc; i++) outdata[i] = -1; 415 for (i = 0; i < nleaves; i++) outdata[i * stride] = 1000 * (rank + 1) + i; 416 PetscCall(PetscSFGatherBegin(sf, MPIU_INT, outdata, indata)); 417 PetscCall(PetscSFGatherEnd(sf, MPIU_INT, outdata, indata)); 418 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Gathered data at multi-roots from leaves\n")); 419 PetscCall(PetscIntView(inedges, indata, PETSC_VIEWER_STDOUT_WORLD)); 420 PetscCall(PetscFree2(indata, outdata)); 421 } 422 423 if (test_scatter) { 424 const PetscInt *degree; 425 PetscInt j, count, inedges, *indata, *outdata; 426 PetscCall(PetscSFComputeDegreeBegin(sf, °ree)); 427 PetscCall(PetscSFComputeDegreeEnd(sf, °ree)); 428 for (i = 0, inedges = 0; i < nrootsalloc; i++) inedges += degree[i]; 429 PetscCall(PetscMalloc2(inedges, &indata, nleavesalloc, &outdata)); 430 for (i = 0; i < nleavesalloc; i++) outdata[i] = -1; 431 for (i = 0, count = 0; i < nrootsalloc; i++) { 432 for (j = 0; j < degree[i]; j++) indata[count++] = 1000 * (rank + 1) + 100 * i + j; 433 } 434 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Data at multi-roots, to scatter to leaves\n")); 435 PetscCall(PetscIntView(inedges, indata, PETSC_VIEWER_STDOUT_WORLD)); 436 437 PetscCall(PetscSFScatterBegin(sf, MPIU_INT, indata, outdata)); 438 PetscCall(PetscSFScatterEnd(sf, MPIU_INT, indata, outdata)); 439 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Scattered data at leaves\n")); 440 PetscCall(PetscIntView(nleavesalloc, outdata, PETSC_VIEWER_STDOUT_WORLD)); 441 PetscCall(PetscFree2(indata, outdata)); 442 } 443 444 if (test_embed) { 445 const PetscInt nroots = 1 + (PetscInt)(rank == 0); 446 PetscInt selected[2]; 447 PetscSF esf; 448 449 selected[0] = stride; 450 selected[1] = 2 * stride; 451 PetscCall(PetscSFCreateEmbeddedRootSF(sf, nroots, selected, &esf)); 452 PetscCall(PetscSFSetUp(esf)); 453 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Embedded PetscSF\n")); 454 PetscCall(PetscViewerPushFormat(PETSC_VIEWER_STDOUT_WORLD, PETSC_VIEWER_ASCII_INFO_DETAIL)); 455 PetscCall(PetscSFView(esf, PETSC_VIEWER_STDOUT_WORLD)); 456 PetscCall(PetscViewerPopFormat(PETSC_VIEWER_STDOUT_WORLD)); 457 PetscCall(PetscSFDestroy(&esf)); 458 } 459 460 if (test_invert) { 461 const PetscInt *degree; 462 PetscInt *mRootsOrigNumbering; 463 PetscInt inedges; 464 PetscSF msf, imsf; 465 466 PetscCall(PetscSFGetMultiSF(sf, &msf)); 467 PetscCall(PetscSFCreateInverseSF(msf, &imsf)); 468 PetscCall(PetscSFSetUp(msf)); 469 PetscCall(PetscSFSetUp(imsf)); 470 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Multi-SF\n")); 471 PetscCall(PetscSFView(msf, PETSC_VIEWER_STDOUT_WORLD)); 472 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Multi-SF roots indices in original SF roots numbering\n")); 473 PetscCall(PetscSFComputeDegreeBegin(sf, °ree)); 474 PetscCall(PetscSFComputeDegreeEnd(sf, °ree)); 475 PetscCall(PetscSFComputeMultiRootOriginalNumbering(sf, degree, &inedges, &mRootsOrigNumbering)); 476 PetscCall(PetscIntView(inedges, mRootsOrigNumbering, PETSC_VIEWER_STDOUT_WORLD)); 477 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Inverse of Multi-SF\n")); 478 PetscCall(PetscSFView(imsf, PETSC_VIEWER_STDOUT_WORLD)); 479 PetscCall(PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "## Inverse of Multi-SF, original numbering\n")); 480 PetscCall(PetscSFViewCustomLocals_Private(imsf, mRootsOrigNumbering, PETSC_VIEWER_STDOUT_WORLD)); 481 PetscCall(PetscSFDestroy(&imsf)); 482 PetscCall(PetscFree(mRootsOrigNumbering)); 483 } 484 485 /* Clean storage for star forest. */ 486 PetscCall(PetscSFDestroy(&sf)); 487 PetscCall(PetscFinalize()); 488 return 0; 489 } 490 491 /*TEST 492 493 test: 494 nsize: 4 495 filter: grep -v "type" | grep -v "sort" 496 args: -test_bcast -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 497 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 498 499 test: 500 suffix: 2 501 nsize: 4 502 filter: grep -v "type" | grep -v "sort" 503 args: -test_reduce -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 504 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 505 506 test: 507 suffix: 2_basic 508 nsize: 4 509 args: -test_reduce -sf_type basic 510 511 test: 512 suffix: 3 513 nsize: 4 514 filter: grep -v "type" | grep -v "sort" 515 args: -test_degree -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 516 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 517 518 test: 519 suffix: 3_basic 520 nsize: 4 521 args: -test_degree -sf_type basic 522 523 test: 524 suffix: 4 525 nsize: 4 526 filter: grep -v "type" | grep -v "sort" 527 args: -test_gather -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 528 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 529 530 test: 531 suffix: 4_basic 532 nsize: 4 533 args: -test_gather -sf_type basic 534 535 test: 536 suffix: 4_stride 537 nsize: 4 538 args: -test_gather -sf_type basic -stride 2 539 540 test: 541 suffix: 5 542 nsize: 4 543 filter: grep -v "type" | grep -v "sort" 544 args: -test_scatter -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 545 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 546 547 test: 548 suffix: 5_basic 549 nsize: 4 550 args: -test_scatter -sf_type basic 551 552 test: 553 suffix: 5_stride 554 nsize: 4 555 args: -test_scatter -sf_type basic -stride 2 556 557 test: 558 suffix: 6 559 nsize: 4 560 filter: grep -v "type" | grep -v "sort" 561 # No -sf_window_flavor dynamic due to bug https://gitlab.com/petsc/petsc/issues/555 562 args: -test_embed -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create allocate}} 563 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 564 565 test: 566 suffix: 6_basic 567 nsize: 4 568 args: -test_embed -sf_type basic 569 570 test: 571 suffix: 7 572 nsize: 4 573 filter: grep -v "type" | grep -v "sort" 574 args: -test_invert -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 575 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 576 577 test: 578 suffix: 7_basic 579 nsize: 4 580 args: -test_invert -sf_type basic 581 582 test: 583 suffix: basic 584 nsize: 4 585 args: -test_bcast -sf_type basic 586 output_file: output/ex1_1_basic.out 587 588 test: 589 suffix: bcastop_basic 590 nsize: 4 591 args: -test_bcastop -sf_type basic 592 output_file: output/ex1_bcastop_basic.out 593 594 test: 595 suffix: 8 596 nsize: 3 597 filter: grep -v "type" | grep -v "sort" 598 args: -test_bcast -test_sf_distribute -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}} 599 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 600 601 test: 602 suffix: 8_basic 603 nsize: 3 604 args: -test_bcast -test_sf_distribute -sf_type basic 605 606 test: 607 suffix: 9_char 608 nsize: 4 609 args: -sf_type basic -test_bcast -test_reduce -test_op max -test_char 610 611 # Here we do not test -sf_window_flavor dynamic since it is designed for repeated SFs with few different rootdata pointers 612 test: 613 suffix: 10 614 filter: grep -v "type" | grep -v "sort" 615 nsize: 4 616 args: -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create allocate}} -test_all -test_bcastop 0 -test_fetchandop 0 617 requires: defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 618 619 # The nightly test suite with MPICH uses ch3:sock, which is broken when winsize == 0 in some of the processes 620 test: 621 suffix: 10_shared 622 output_file: output/ex1_10.out 623 filter: grep -v "type" | grep -v "sort" 624 nsize: 4 625 args: -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor shared -test_all -test_bcastop 0 -test_fetchandop 0 626 requires: defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) !defined(PETSC_HAVE_MPICH_NUMVERSION) defined(PETSC_HAVE_MPI_ONE_SIDED) defined(PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW) 627 628 test: 629 suffix: 10_basic 630 nsize: 4 631 args: -sf_type basic -test_all -test_bcastop 0 -test_fetchandop 0 632 633 test: 634 suffix: 10_basic_vector 635 nsize: 4 636 args: -sf_type basic -test_all -test_bcastop 0 -test_fetchandop 0 -test_vector 637 638 TEST*/ 639