159599516SKenneth E. Jansen #include <stdio.h>
259599516SKenneth E. Jansen #include <stdlib.h>
359599516SKenneth E. Jansen #include <string.h>
406db1583SCameron Smith #include <cassert>
5ea8ce4a6SBenjamin Matthews
6ea8ce4a6SBenjamin Matthews #define OMPI_SKIP_MPICXX 1
7ea8ce4a6SBenjamin Matthews #include <mpi.h>
8ea8ce4a6SBenjamin Matthews
9513954efSKenneth E. Jansen #ifdef HAVE_PETSC
10513954efSKenneth E. Jansen #include <petscsys.h>
11513954efSKenneth E. Jansen #include <petscviewer.h>
12513954efSKenneth E. Jansen #endif
13ea8ce4a6SBenjamin Matthews
1459599516SKenneth E. Jansen #include <sys/types.h>
1559599516SKenneth E. Jansen #include <sys/stat.h>
1659599516SKenneth E. Jansen
1759599516SKenneth E. Jansen #if !(defined IOSTREAMH)
1859599516SKenneth E. Jansen #include <iostream>
191bfea438SCameron Smith #include <sstream>
2059599516SKenneth E. Jansen using namespace std;
2159599516SKenneth E. Jansen #endif
2259599516SKenneth E. Jansen
2359599516SKenneth E. Jansen #ifdef intel
2459599516SKenneth E. Jansen #include <direct.h>
2559599516SKenneth E. Jansen #define chdir _chdir
2659599516SKenneth E. Jansen #else
2759599516SKenneth E. Jansen #include <unistd.h>
2859599516SKenneth E. Jansen #endif
29*b2ae6a0bSKenneth E. Jansen #if defined(__linux__) && !defined(__bgq__)
30*b2ae6a0bSKenneth E. Jansen /* BM's proposed fix to the stacksize issue ...More below same comment*/
31*b2ae6a0bSKenneth E. Jansen #include <sys/time.h>
32*b2ae6a0bSKenneth E. Jansen #include <sys/resource.h>
33*b2ae6a0bSKenneth E. Jansen #endif
3459599516SKenneth E. Jansen
359d99a6baSCameron Smith #include "phasta_version.h"
36ea8ce4a6SBenjamin Matthews #include "common_c.h"
37ea8ce4a6SBenjamin Matthews #include "Input.h"
3881372b97SCameron Smith #include "phiostats.h"
39ea8ce4a6SBenjamin Matthews #include "phstream.h"
40ea8ce4a6SBenjamin Matthews #include "streamio.h"
41ea8ce4a6SBenjamin Matthews
42ea8ce4a6SBenjamin Matthews #include <FCMangle.h>
43ea8ce4a6SBenjamin Matthews #define input FortranCInterface_GLOBAL_(input,INPUT)
44ea8ce4a6SBenjamin Matthews #define proces FortranCInterface_GLOBAL_(proces,PROCES)
45ea8ce4a6SBenjamin Matthews #define timer FortranCInterface_GLOBAL_(timer,TIMER)
46ea8ce4a6SBenjamin Matthews
4759599516SKenneth E. Jansen extern "C" char phasta_iotype[80];
4859599516SKenneth E. Jansen char phasta_iotype[80];
4959599516SKenneth E. Jansen
5059599516SKenneth E. Jansen extern int SONFATH;
5159599516SKenneth E. Jansen extern "C" void proces();
5259599516SKenneth E. Jansen extern "C" void input();
539ae91bddSCameron Smith extern int input_fform(phSolver::Input&);
5459599516SKenneth E. Jansen extern void setIOparam(); // For SyncIO
551063a5c0SCameron Smith extern "C" void initPhastaCommonVars();
5659599516SKenneth E. Jansen
5759599516SKenneth E. Jansen int myrank; /* made file global for ease in debugging */
5859599516SKenneth E. Jansen
5959599516SKenneth E. Jansen void
catchDebugger()6059599516SKenneth E. Jansen catchDebugger() {
6159599516SKenneth E. Jansen while (1) {
6259599516SKenneth E. Jansen int debuggerPresent=0;
6359599516SKenneth E. Jansen int fakeSTOP = 1; // please stop HERE and assign as next line
6459599516SKenneth E. Jansen // assign or set debuggerPresent=1
6559599516SKenneth E. Jansen if(debuggerPresent) {
6659599516SKenneth E. Jansen break;
6759599516SKenneth E. Jansen }
6859599516SKenneth E. Jansen }
6959599516SKenneth E. Jansen }
7059599516SKenneth E. Jansen
7159599516SKenneth E. Jansen // some useful debugging functions
7259599516SKenneth E. Jansen
7359599516SKenneth E. Jansen void
pdarray(void * darray,int start,int end)7459599516SKenneth E. Jansen pdarray( void* darray , int start, int end ) {
7559599516SKenneth E. Jansen for( int i=start; i < end; i++ ){
7659599516SKenneth E. Jansen cout << ((double*)darray)[i] << endl;
7759599516SKenneth E. Jansen }
7859599516SKenneth E. Jansen }
7959599516SKenneth E. Jansen
8059599516SKenneth E. Jansen void
piarray(void * iarray,int start,int end)8159599516SKenneth E. Jansen piarray( void* iarray , int start, int end ) {
8259599516SKenneth E. Jansen for( int i=start; i < end; i++ ){
8359599516SKenneth E. Jansen cout << ((int*)iarray)[i] << endl;
8459599516SKenneth E. Jansen }
8559599516SKenneth E. Jansen }
8659599516SKenneth E. Jansen
8706db1583SCameron Smith namespace {
cdToParent()886b966dd8SCameron Smith int cdToParent() {
896b966dd8SCameron Smith if( chdir("..") ) {
906b966dd8SCameron Smith fprintf(stderr,"could not change to the parent directory\n");
916b966dd8SCameron Smith return 1;
926b966dd8SCameron Smith } else {
936b966dd8SCameron Smith return 0;
946b966dd8SCameron Smith }
956b966dd8SCameron Smith }
run(phSolver::Input & ctrl)9606db1583SCameron Smith int run(phSolver::Input& ctrl) {
973969618bSCameron Smith int size,ierr;
983969618bSCameron Smith char inpfilename[100];
993969618bSCameron Smith MPI_Comm_size (MPI_COMM_WORLD, &size);
1003969618bSCameron Smith MPI_Comm_rank (MPI_COMM_WORLD, &myrank);
1013969618bSCameron Smith
1029d99a6baSCameron Smith if(!myrank)
1039d99a6baSCameron Smith printf("PHASTA Git hash %s\n", phasta_version());
1049d99a6baSCameron Smith
1053969618bSCameron Smith workfc.numpe = size;
1063969618bSCameron Smith workfc.myrank = myrank;
107ea868eb1SCameron Smith
1081063a5c0SCameron Smith initPhastaCommonVars();
109ea868eb1SCameron Smith /* Input data */
1109ae91bddSCameron Smith ierr = input_fform(ctrl);
111ea868eb1SCameron Smith if(!ierr){
112ea868eb1SCameron Smith sprintf(inpfilename,"%d-procs_case/",size);
113ea868eb1SCameron Smith if( chdir( inpfilename ) ) {
114ea868eb1SCameron Smith cerr << "could not change to the problem directory "
115ea868eb1SCameron Smith << inpfilename << endl;
1164c223e05SCameron Smith return -1;
117b13e4d76SCameron Smith }
118ea868eb1SCameron Smith MPI_Barrier(MPI_COMM_WORLD);
11981372b97SCameron Smith phastaio_initStats();
120ea868eb1SCameron Smith input();
121ea868eb1SCameron Smith /* now we can start the solver */
122ea868eb1SCameron Smith proces();
12381372b97SCameron Smith phastaio_printStats();
124ea868eb1SCameron Smith }
125ea868eb1SCameron Smith else{
126ea868eb1SCameron Smith printf("error during reading ascii input \n");
127ea868eb1SCameron Smith }
128ea868eb1SCameron Smith MPI_Barrier(MPI_COMM_WORLD);
129ea868eb1SCameron Smith if ( myrank == 0 ) {
130ea868eb1SCameron Smith printf("phasta.cc - last call before finalize!\n");
131ea868eb1SCameron Smith }
1326b966dd8SCameron Smith if( cdToParent() )
1334c223e05SCameron Smith return -1;
1344c223e05SCameron Smith return timdat.lstep;
135ea868eb1SCameron Smith }
13606db1583SCameron Smith }
13706db1583SCameron Smith
phasta(phSolver::Input & ctrl)13806db1583SCameron Smith int phasta(phSolver::Input& ctrl) {
13906db1583SCameron Smith outpar.input_mode = 0; //FIXME magic value for posix
14006db1583SCameron Smith outpar.output_mode = 0; //FIXME magic value for posix
14106db1583SCameron Smith return run(ctrl);
14206db1583SCameron Smith }
14306db1583SCameron Smith
phasta(phSolver::Input & ctrl,grstream grs)14406db1583SCameron Smith int phasta(phSolver::Input& ctrl, grstream grs) {
14506db1583SCameron Smith assert(grs);
14606db1583SCameron Smith outpar.input_mode = -1; //FIXME magic value for streams
14706db1583SCameron Smith outpar.output_mode = 1; //FIXME magic value for syncio
14806db1583SCameron Smith streamio_set_gr(grs);
14906db1583SCameron Smith return run(ctrl);
15006db1583SCameron Smith }
15106db1583SCameron Smith
phasta(phSolver::Input & ctrl,RStream * rs)15206db1583SCameron Smith int phasta(phSolver::Input& ctrl, RStream* rs) {
15306db1583SCameron Smith fprintf(stderr, "HEY! if you see this email Cameron and tell him "
15406db1583SCameron Smith "to implement %s(...) on line %d of %s "
15506db1583SCameron Smith "... returning an error\n", __func__, __LINE__, __FILE__);
15606db1583SCameron Smith return -1;
15706db1583SCameron Smith }
15806db1583SCameron Smith
phasta(phSolver::Input & ctrl,GRStream * grs,RStream * rs)15906db1583SCameron Smith int phasta(phSolver::Input& ctrl, GRStream* grs, RStream* rs) {
16006db1583SCameron Smith outpar.input_mode = -1; //FIXME magic value for streams
16106db1583SCameron Smith outpar.output_mode = -1; //FIXME magic value for streams
16206db1583SCameron Smith assert(grs);
16306db1583SCameron Smith assert(rs);
16406db1583SCameron Smith streamio_set_gr(grs);
16506db1583SCameron Smith streamio_set_r(rs);
16606db1583SCameron Smith return run(ctrl);
16706db1583SCameron Smith }
1686d494944SCameron Smith
phasta(int argc,char * argv[])169163d1986SCameron Smith int phasta( int argc, char *argv[] ) {
17059599516SKenneth E. Jansen int size,ierr;
17159599516SKenneth E. Jansen char inpfilename[100];
17259599516SKenneth E. Jansen char* pauseDebugger = getenv("catchDebugger");
17359599516SKenneth E. Jansen MPI_Comm_size (MPI_COMM_WORLD, &size);
17459599516SKenneth E. Jansen MPI_Comm_rank (MPI_COMM_WORLD, &myrank);
1759d99a6baSCameron Smith if(!myrank)
1769d99a6baSCameron Smith printf("PHASTA Git hash %s\n", phasta_version());
17759599516SKenneth E. Jansen
178*b2ae6a0bSKenneth E. Jansen #if defined(__linux__) && !defined(__bgq__)
179*b2ae6a0bSKenneth E. Jansen /* BM's proposed fix to the stacksize issue */
180*b2ae6a0bSKenneth E. Jansen struct rlimit stack_size_lim;
181*b2ae6a0bSKenneth E. Jansen int rlim_result;
182*b2ae6a0bSKenneth E. Jansen memset(&stack_size_lim, 0, sizeof(struct rlimit));
183*b2ae6a0bSKenneth E. Jansen stack_size_lim.rlim_cur = RLIM_INFINITY;
184*b2ae6a0bSKenneth E. Jansen stack_size_lim.rlim_max = RLIM_INFINITY;
185*b2ae6a0bSKenneth E. Jansen rlim_result = setrlimit(RLIMIT_STACK, &stack_size_lim);
186*b2ae6a0bSKenneth E. Jansen if(myrank == 0) fprintf(stderr, "Attempting to set ulimit from phasta exec ");
187*b2ae6a0bSKenneth E. Jansen if(rlim_result == -1) perror("setrlimit: ");
188*b2ae6a0bSKenneth E. Jansen #endif
189*b2ae6a0bSKenneth E. Jansen
190513954efSKenneth E. Jansen #ifdef HAVE_PETSC
191513954efSKenneth E. Jansen PETSC_COMM_WORLD=MPI_COMM_WORLD;
192513954efSKenneth E. Jansen PetscInitialize(&argc,&argv,PETSC_NULL,PETSC_NULL);
193513954efSKenneth E. Jansen PetscInitializeFortran();
194513954efSKenneth E. Jansen PetscPopSignalHandler(); //Let us segfault in peace ;-)
1956dec8975SKenneth E. Jansen // ok with Master PetscOptionsView(NULL,PETSC_VIEWER_STDOUT_WORLD);
1966dec8975SKenneth E. Jansen // ok with 3.6x PetscOptionsView(PETSC_VIEWER_STDOUT_WORLD);
1978d407b5dSKenneth E. Jansen PetscOptionsView(NULL,PETSC_VIEWER_STDOUT_WORLD);
198129f10f8SBen Matthews if(sizeof(PetscInt) != sizeof(long long int))
199129f10f8SBen Matthews {
200129f10f8SBen Matthews //PetscInt and gcorp_t (gen_ncorp.c)
201129f10f8SBen Matthews //must be the same size. hard-coded for now
202129f10f8SBen Matthews //FIXME
203129f10f8SBen Matthews if(myrank == 0)
204129f10f8SBen Matthews {
205129f10f8SBen Matthews printf("WARNING: PETSc Index Size Mismatch\n");
206129f10f8SBen Matthews printf("WARNING: Proceed at your own risk\n");
207129f10f8SBen Matthews }
208129f10f8SBen Matthews }
209513954efSKenneth E. Jansen MPI_Barrier(MPI_COMM_WORLD);
210513954efSKenneth E. Jansen if(myrank == 0)
211513954efSKenneth E. Jansen {
212513954efSKenneth E. Jansen printf("PETSc Initialized\n");
213513954efSKenneth E. Jansen fflush(stdout);
214513954efSKenneth E. Jansen }
215513954efSKenneth E. Jansen #endif
21659599516SKenneth E. Jansen workfc.numpe = size;
21759599516SKenneth E. Jansen workfc.myrank = myrank;
21859599516SKenneth E. Jansen
21959599516SKenneth E. Jansen #if (defined WIN32)
22059599516SKenneth E. Jansen if(argc > 2 ){
22159599516SKenneth E. Jansen catchDebugger();
22259599516SKenneth E. Jansen }
22359599516SKenneth E. Jansen #endif
22459599516SKenneth E. Jansen #if (1) // ALWAYS ( defined LAUNCH_GDB ) && !( defined WIN32 )
22559599516SKenneth E. Jansen
22659599516SKenneth E. Jansen if ( pauseDebugger ) {
22759599516SKenneth E. Jansen
22859599516SKenneth E. Jansen int parent_pid = getpid();
22959599516SKenneth E. Jansen int gdb_child = fork();
23059599516SKenneth E. Jansen cout << "gdb_child" << gdb_child << endl;
23159599516SKenneth E. Jansen
23259599516SKenneth E. Jansen if( gdb_child == 0 ) {
23359599516SKenneth E. Jansen
23459599516SKenneth E. Jansen cout << "Debugger Process initiating" << endl;
2351bfea438SCameron Smith stringstream exec_string;
23659599516SKenneth E. Jansen
23759599516SKenneth E. Jansen #if ( defined decalp )
23859599516SKenneth E. Jansen exec_string <<"xterm -e idb "
23959599516SKenneth E. Jansen << " -pid "<< parent_pid <<" "<< argv[0] << endl;
24059599516SKenneth E. Jansen #endif
24159599516SKenneth E. Jansen #if ( defined LINUX )
24259599516SKenneth E. Jansen exec_string <<"xterm -e gdb"
24359599516SKenneth E. Jansen << " -pid "<< parent_pid <<" "<< argv[0] << endl;
24459599516SKenneth E. Jansen #endif
24559599516SKenneth E. Jansen #if ( defined SUN4 )
24659599516SKenneth E. Jansen exec_string <<"xterm -e dbx "
24759599516SKenneth E. Jansen << " - "<< parent_pid <<" "<< argv[0] << endl;
24859599516SKenneth E. Jansen #endif
24959599516SKenneth E. Jansen #if ( defined IRIX )
25059599516SKenneth E. Jansen exec_string <<"xterm -e dbx "
25159599516SKenneth E. Jansen << " -p "<< parent_pid <<" "<< argv[0] << endl;
25259599516SKenneth E. Jansen #endif
2531bfea438SCameron Smith string s = exec_string.str();
2541bfea438SCameron Smith system( s.c_str() );
25559599516SKenneth E. Jansen exit(0);
25659599516SKenneth E. Jansen }
25759599516SKenneth E. Jansen catchDebugger();
25859599516SKenneth E. Jansen }
25959599516SKenneth E. Jansen
26059599516SKenneth E. Jansen #endif
26159599516SKenneth E. Jansen
26259599516SKenneth E. Jansen /* Input data */
26359599516SKenneth E. Jansen if(argc > 1 ){
26459599516SKenneth E. Jansen strcpy(inpfilename,argv[1]);
26559599516SKenneth E. Jansen } else {
26659599516SKenneth E. Jansen strcpy(inpfilename,"solver.inp");
26759599516SKenneth E. Jansen }
2689ae91bddSCameron Smith string defaultConf = ".";
2699ae91bddSCameron Smith const char* path_to_config = getenv("PHASTA_CONFIG");
2709ae91bddSCameron Smith if(path_to_config)
2719ae91bddSCameron Smith defaultConf = path_to_config;
2729ae91bddSCameron Smith defaultConf.append("/input.config");
2739ae91bddSCameron Smith string userConf(inpfilename);
2749ae91bddSCameron Smith phSolver::Input ctrl(userConf, defaultConf);
2751063a5c0SCameron Smith initPhastaCommonVars();
2769ae91bddSCameron Smith ierr = input_fform(ctrl);
27759599516SKenneth E. Jansen if(!ierr){
27859599516SKenneth E. Jansen sprintf(inpfilename,"%d-procs_case/",size);
27959599516SKenneth E. Jansen if( chdir( inpfilename ) ) {
28059599516SKenneth E. Jansen cerr << "could not change to the problem directory "
28159599516SKenneth E. Jansen << inpfilename << endl;
2824c223e05SCameron Smith return -1;
28359599516SKenneth E. Jansen }
2842992f42eSCameron Smith MPI_Barrier(MPI_COMM_WORLD);
28559599516SKenneth E. Jansen setIOparam();
2869f4aafb6SCameron Smith outpar.input_mode = outpar.nsynciofiles; //FIXME this is awful
2879f4aafb6SCameron Smith outpar.output_mode = outpar.nsynciofiles; //FIXME this is awful
28881372b97SCameron Smith phastaio_initStats();
28959599516SKenneth E. Jansen input();
29059599516SKenneth E. Jansen /* now we can start the solver */
29159599516SKenneth E. Jansen proces();
29281372b97SCameron Smith phastaio_printStats();
29359599516SKenneth E. Jansen }
29459599516SKenneth E. Jansen else{
29559599516SKenneth E. Jansen printf("error during reading ascii input \n");
29659599516SKenneth E. Jansen }
297513954efSKenneth E. Jansen #ifdef HAVE_PETSC
298513954efSKenneth E. Jansen PetscFinalize();
299513954efSKenneth E. Jansen #endif
30059599516SKenneth E. Jansen MPI_Barrier(MPI_COMM_WORLD);
30159599516SKenneth E. Jansen if ( myrank == 0 ) {
30259599516SKenneth E. Jansen printf("phasta.cc - last call before finalize!\n");
30359599516SKenneth E. Jansen }
3046b966dd8SCameron Smith if( cdToParent() )
3056b966dd8SCameron Smith return -1;
3064c223e05SCameron Smith return timdat.lstep;
30759599516SKenneth E. Jansen }
308