examples - OpenGrok history log for /honee/examples

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73170398	02-Dec-2024	James Wright <james@jameswright.xyz>	chore: ProcessCommandLineOptions to use Honee arg /honee/doc/runtime_options.md navierstokes.c /honee/include/navierstokes.h /honee/problems/stg_shur14.c /honee/src/cloptions.c /honee/src/setupts.c /honee/tests/junit_common.py
035c7924	01-Dec-2024	James Wright <james@jameswright.xyz>	test: Add test for total_ke csv monitor /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c taylor_green_vortex.yaml /honee/include/navierstokes.h /honee/qfunctions/monitor_totalkineticenergy.h /honee/src/misc.c /honee/src/monitor_totalkineticenergy.c /honee/src/setupts.c /honee/tests/junit.py /honee/tests/junit_common.py /honee/tests/output/fluids-navierstokes-taylor-green.bin /honee/tests/output/taylorgreen_totalke.csv
282bb53e	23-Nov-2024	James Wright <james@jameswright.xyz>	refactor: Cleanup top-level DM setup navierstokes.c
60a7e45e	23-Nov-2024	James Wright <james@jameswright.xyz>	refactor: Cleanup Ceed initialization navierstokes.c
15747f0f	23-Nov-2024	James Wright <james@jameswright.xyz>	refactor: Minor tidying up navierstokes.c /honee/src/cloptions.c /honee/src/misc.c
c500636f	23-Nov-2024	James Wright <james@jameswright.xyz>	refactor: Move output_dir creation to CLOptions No need to have this clutter up the top domain level navierstokes.c /honee/src/cloptions.c
5907cb7e	23-Nov-2024	James Wright <james@jameswright.xyz>	refactor: Remove RegisterProblems_NS from global namespace Just call the function when we go to process CL arguments navierstokes.c /honee/include/navierstokes.h /honee/qfunctions/sgs_dd_model.h /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/grid_anisotropy_tensor.c /honee/src/honee-mass.c /honee/src/misc.c /honee/src/setuplibceed.c /honee/src/turb_spanstats.c /honee/src/velocity_gradient_projection.c
d114cded	16-Nov-2024	James Wright <james@jameswright.xyz>	feat: Add HoneeLoadInitialCondition() /honee/CHANGELOG.md navierstokes.c /honee/include/honee-file.h /honee/src/honee-file.c
481d14cb	17-Nov-2024	James Wright <james@jameswright.xyz>	refactor: Remove -continue, add use_continue_file internally /honee/doc/runtime_options.md navierstokes.c /honee/include/honee-file.h /honee/include/mat-ceed-impl.h /honee/include/mat-ceed.h /honee/include/navierstokes.h /honee/include/petsc-ceed-utils.h /honee/problems/sgs_dd_model.c /honee/qfunctions/advection.h /honee/qfunctions/advection_types.h /honee/qfunctions/blasius.h /honee/qfunctions/channel.h /honee/qfunctions/densitycurrent.h /honee/qfunctions/diff_flux_projection.h /honee/qfunctions/differential_filter.h /honee/qfunctions/eulervortex.h /honee/qfunctions/gaussianwave.h /honee/qfunctions/grid_anisotropy_tensor.h /honee/qfunctions/inverse_multiplicity.h /honee/qfunctions/mass.h /honee/qfunctions/newtonian.h /honee/qfunctions/newtonian_state.h /honee/qfunctions/newtonian_types.h /honee/qfunctions/setupgeo.h /honee/qfunctions/setupgeo2d.h /honee/qfunctions/setupgeo_helpers.h /honee/qfunctions/sgs_dd_model.h /honee/qfunctions/sgs_dd_training.h /honee/qfunctions/sgs_dd_utils.h /honee/qfunctions/shocktube.h /honee/qfunctions/stabilization.h /honee/qfunctions/stg_shur14.h /honee/qfunctions/stg_shur14_type.h /honee/qfunctions/strong_boundary_conditions.h /honee/qfunctions/taylorgreen.h /honee/qfunctions/turb_spanstats.h /honee/qfunctions/utils.h /honee/qfunctions/utils_eigensolver_jacobi.h /honee/qfunctions/velocity_gradient_projection.h /honee/src/cloptions.c /honee/src/honee-file.c /honee/src/mat-ceed.c /honee/src/misc.c /honee/src/petsc_ops.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/turb_spanstats.c /honee/tests/stats_test.yaml
80e9ac5b	15-Oct-2024	James Wright <james@jameswright.xyz>	refactor: Rename advection flags to `-advection_ic_*` /honee/doc/runtime_options.md advection_wave.yaml navierstokes.c /honee/problems/advection.c
57bb6b22	14-Oct-2024	James Wright <james@jameswright.xyz>	style(advdif): Use switch for IC-specific flags advection.yaml /honee/problems/advection.c
b4fd18df	14-Oct-2024	James Wright <james@jameswright.xyz>	feat(advdif): Add bl_height_factor option /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/problems/advection.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/qfunctions/advection.h /honee/qfunctions/advection_types.h /honee/src/differential_filter.c /honee/src/setuplibceed.c /honee/src/smartsim/sgs_dd_training.c /honee/tests/output/fluids-navierstokes-adv2d-boundary-layer-ic.bin
e3663b90	10-Oct-2024	James Wright <james@jameswright.xyz>	chore: Move CeedData into Honee /honee/.gitlab-ci.yml /honee/Makefile /honee/README.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/grid_anisotropy_tensor.c /honee/src/misc.c /honee/src/setuplibceed.c /honee/src/smartsim/sgs_dd_training.c /honee/src/smartsim_weak.c /honee/src/strong_boundary_conditions.c /honee/src/turb_spanstats.c /honee/src/velocity_gradient_projection.c /honee/tests/output/fluids-navierstokes-flatplate-STG.bin /honee/tests/output/fluids-navierstokes-gaussianwave-IDL.bin /honee/tests/output/fluids-navierstokes-gaussianwave-shell.bin
0c373b74	17-Jul-2024	James Wright <james@jameswright.xyz>	refactor: Change User -> Honee /honee/doc/theory.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/bc_freestream.c /honee/problems/bc_slip.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/densitycurrent.c /honee/problems/eulervortex.c /honee/problems/gaussianwave.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/problems/shocktube.c /honee/problems/stg_shur14.c /honee/problems/stg_shur14.h /honee/qfunctions/advection.h /honee/src/boundary_condition.c /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/dm_utils.c /honee/src/grid_anisotropy_tensor.c /honee/src/mat-ceed.c /honee/src/misc.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/smartsim/smartsim.c /honee/src/smartsim_weak.c /honee/src/strong_boundary_conditions.c /honee/src/turb_spanstats.c /honee/src/velocity_gradient_projection.c /honee/tests/output/fluids-navierstokes-adv2d-wave-square-direct_divdiff.bin /honee/tests/output/fluids-navierstokes-adv2d-wave-square-indirect_divdiff.bin
3da913d1	19-Sep-2024	James Wright <james@jameswright.xyz>	feat: Add flatplate STG yaml and setup files Needed for reframe testing on Aurora, offers "real" test of turbulent flat plate simulations STGInflow_flatplate_STG.dat STGRand_flatplate_STG.dat flatplate_STG.yaml flatplate_STG_spacing.dat navierstokes.c /honee/tests/output/fluids-navierstokes-flatplate-STG.bin
63cbeca8	18-Sep-2024	James Wright <james@jameswright.xyz>	feat(advdif): Add BL yaml file, use in test advection_bl.yaml navierstokes.c /honee/include/navierstokes.h /honee/qfunctions/utils.h /honee/src/dm_utils.c /honee/src/mat-ceed.c /honee/src/misc.c /honee/src/petsc_ops.c /honee/tests/output/fluids-navierstokes-adv2d-boundary-layer-ic.bin
3d1afcc1	19-Aug-2024	James Wright <james@jameswright.xyz>	feat(advdif): Add Boundary Layer IC, wind type /honee/.gitlab-ci.yml /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/qfunctions/advection.h /honee/qfunctions/advection_types.h /honee/qfunctions/mass.h /honee/qfunctions/newtonian.h /honee/src/setupdm.c /honee/tests/output/fluids-navierstokes-adv2d-boundary-layer-ic.bin
141134f8	17-Aug-2024	James Wright <james@jameswright.xyz>	test(advdif): Add tests for div(F_diff) projection navierstokes.c /honee/tests/output/fluids-navierstokes-adv-rotation-cosine.bin /honee/tests/output/fluids-navierstokes-adv2d-wave-square-direct_divdiff.bin /honee/tests/output/fluids-navierstokes-adv2d-wave-square-indirect_divdiff.bin
49c2c2da	17-Aug-2024	James Wright <james@jameswright.xyz>	fix(advdif): Remove ceed: resource from wave yaml /honee/CHANGELOG.md advection_wave.yaml /honee/problems/advection.c /honee/problems/newtonian.c /honee/qfunctions/advection.h /honee/qfunctions/advection_types.h /honee/qfunctions/diff_flux_projection.h /honee/qfunctions/mass.h /honee/qfunctions/newtonian_types.h /honee/qfunctions/setupgeo2d.h /honee/qfunctions/stabilization_types.h /honee/qfunctions/utils.h /honee/src/diff_flux_projection.c /honee/src/misc.c /honee/src/qdata.c /honee/src/setuplibceed.c /honee/src/setupts.c
fbabb365	13-Aug-2024	James Wright <james@jameswright.xyz>	feat(advdif): Add diffusion tau coefficient /honee/CHANGELOG.md /honee/doc/runtime_options.md /honee/doc/theory.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/newtonian.c /honee/qfunctions/advection.h /honee/qfunctions/advection_types.h /honee/src/dm_utils.c /honee/tests/output/fluids-navierstokes-adv2d-wave-square.bin
dac5a352	29-Jul-2024	James Wright <james@jameswright.xyz>	tests(advdif): Add square IC test navierstokes.c /honee/problems/advection.c /honee/tests/output/fluids-navierstokes-adv2d-wave-square.bin
22312f1f	27-Jul-2024	James Wright <james@jameswright.xyz>	test(advdif): Add test for sine wave IC /honee/CHANGELOG.md /honee/doc/runtime_options.md advection_wave.yaml navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/newtonian.c /honee/problems/stg_shur14.c /honee/qfunctions/advection.h /honee/qfunctions/advection_types.h /honee/qfunctions/diff_flux_projection.h /honee/qfunctions/eulervortex.h /honee/qfunctions/newtonian.h /honee/qfunctions/setupgeo.h /honee/qfunctions/setupgeo2d.h /honee/qfunctions/setupgeo_helpers.h /honee/qfunctions/stg_shur14.h /honee/qfunctions/utils.h /honee/src/diff_flux_projection.c /honee/src/qdata.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/tests/output/fluids-navierstokes-adv2d-wave-sine.bin
8c85b835	24-Jul-2024	James Wright <james@jameswright.xyz>	feat: Implement divergence of diffusive flux /honee/CHANGELOG.md /honee/doc/references.bib /honee/doc/runtime_options.md /honee/doc/theory.md navierstokes.c /honee/include/log_events.h /honee/include/navierstokes.h /honee/problems/newtonian.c /honee/qfunctions/advection.h /honee/qfunctions/diff_flux_projection.h /honee/qfunctions/mass.h /honee/qfunctions/newtonian.h /honee/qfunctions/newtonian_state.h /honee/qfunctions/newtonian_types.h /honee/qfunctions/setupgeo.h /honee/qfunctions/stabilization.h /honee/qfunctions/utils.h /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/dm_utils.c /honee/src/grid_anisotropy_tensor.c /honee/src/log_events.c /honee/src/misc.c /honee/src/qdata.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/velocity_gradient_projection.c /honee/tests/output/fluids-navierstokes-blasius-bc_slip.bin /honee/tests/output/fluids-navierstokes-blasius-bc_slip_indirect.bin
be29160d	22-Jul-2024	James Wright <james@jameswright.xyz>	feat: Remove CeedData qdata members navierstokes.c /honee/include/navierstokes.h /honee/problems/sgs_dd_model.c /honee/src/differential_filter.c /honee/src/grid_anisotropy_tensor.c /honee/src/qdata.c /honee/src/setuplibceed.c /honee/src/turb_spanstats.c /honee/src/velocity_gradient_projection.c
e816a7e4	22-Jul-2024	James Wright <james@jameswright.xyz>	feat: Implement centralized storage of QData navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/blasius.c /honee/problems/densitycurrent.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/problems/shocktube.c /honee/qfunctions/advection.h /honee/qfunctions/eulervortex.h /honee/src/differential_filter.c /honee/src/grid_anisotropy_tensor.c /honee/src/misc.c /honee/src/qdata.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/strong_boundary_conditions.c /honee/src/turb_spanstats.c /honee/src/velocity_gradient_projection.c
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