examples - OpenGrok history log for /honee/examples

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8314b541	09-Feb-2026	James Wright <james@jameswright.xyz>	fix(upstream): -ts_dt -> -ts_time_step /honee/.gitlab-ci.yml advection.yaml advection_bl.yaml advection_wave.yaml blasius.yaml channel.yaml flatplate_STG.yaml gaussianwave.yaml navierstokes.c taylor_green_vortex.yaml vortexshedding.yaml /honee/include/dm-utils.h /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/src/boundary_condition.c /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/dm-utils.c /honee/src/grid_anisotropy_tensor.c /honee/src/honee.c /honee/src/misc.c /honee/src/monitor_cfl.c /honee/src/monitor_totalkineticenergy.c /honee/src/qdata.c /honee/src/setuplibceed.c /honee/src/spanstats/cflpe.c /honee/src/spanstats/spanstats.c /honee/src/spanstats/turbulence.c /honee/src/strong_boundary_conditions.c /honee/src/velocity_gradient_projection.c /honee/tests/blasius_stgtest.yaml /honee/tests/blasius_test.yaml /honee/tests/channel_divdiff_verify.yaml /honee/tests/gaussianwave_cgns_load.yaml /honee/tests/junit.py /honee/tests/stats_test.yaml
7e3656bd	16-Oct-2025	James Wright <james@jameswright.xyz>	feat: Add dedicated mesh transform functionality Mostly so that the mesh transformation can occur independently of the coordinate scaling process. /honee/CHANGELOG.md blasius.yaml flatplate_STG.yaml navierstokes.c /honee/include/honee.h /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/problems/shocktube.c /honee/src/cloptions.c /honee/src/honee-meshtransform.c /honee/tests/blasius_stgtest.yaml /honee/tests/blasius_test.yaml /honee/tests/smartsim_regression_framework.py /honee/tests/stats_test.yaml
4d9179f2	14-Oct-2025	James Wright <james@jameswright.xyz>	feat: SetupDM also sets DMPlex Scale /honee/.clang-format /honee/.gitignore /honee/.gitlab-ci.yml /honee/Makefile navierstokes.c /honee/include/bc_definition.h /honee/include/differential_filter.h /honee/include/dm-utils.h /honee/include/honee-file.h /honee/include/honee.h /honee/include/log_events.h /honee/include/mat-ceed-impl.h /honee/include/mat-ceed.h /honee/include/navierstokes.h /honee/include/nodal_projection.h /honee/include/sgs_model_torch.h /honee/include/spanstats.h /honee/problems/advection.c /honee/problems/bc_outflow.c /honee/problems/blasius.c /honee/problems/densitycurrent.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/problems/stg_shur14.c /honee/qfunctions/advection.h /honee/qfunctions/mass.h /honee/qfunctions/newtonian.h /honee/qfunctions/newtonian_state.h /honee/qfunctions/setupgeo_helpers.h /honee/qfunctions/utils.h /honee/src/bc_definition.c /honee/src/boundary_condition.c /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/dm-utils.c /honee/src/grid_anisotropy_tensor.c /honee/src/honee-file.c /honee/src/honee-ksp.c /honee/src/honee-mass.c /honee/src/honee.c /honee/src/inverse_multiplicity.c /honee/src/log_events.c /honee/src/mat-ceed.c /honee/src/misc.c /honee/src/monitor_cfl.c /honee/src/monitor_totalkineticenergy.c /honee/src/qdata.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/smartsim/smartsim.c /honee/src/smartsim/solution.c /honee/src/spanstats/cflpe.c /honee/src/spanstats/spanstats.c /honee/src/spanstats/turbulence.c /honee/src/strong_boundary_conditions.c /honee/src/velocity_gradient_projection.c
755bbe25	04-Sep-2025	James Wright <james@jameswright.xyz>	test: Add advection CFL/Pe spanstats test navierstokes.c /honee/src/spanstats/spanstats.c /honee/tests/output/cflpe-spanstats-stats-adv-rotation.bin
c4bd9656	03-Sep-2025	James Wright <james@jameswright.xyz>	test: Add wall_time and check_step to tests /honee/.gitlab-ci.yml /honee/CHANGELOG.md /honee/Makefile /honee/doc/auxiliary.md /honee/doc/examples.md /honee/doc/runtime_options.md navierstokes.c /honee/include/honee.h /honee/include/log_events.h /honee/include/navierstokes.h /honee/include/petsc-ceed-utils.h /honee/include/smartsim-impl.h /honee/include/smartsim.h /honee/problems/advection.c /honee/problems/bc_freestream.c /honee/problems/bc_outflow.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/densitycurrent.c /honee/problems/eulervortex.c /honee/problems/gaussianwave.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/problems/shocktube.c /honee/problems/stg_shur14.c /honee/problems/taylorgreen.c /honee/qfunctions/advection.h /honee/qfunctions/bc_freestream.h /honee/qfunctions/bc_freestream_type.h /honee/qfunctions/bc_outflow.h /honee/qfunctions/bc_slip.h /honee/qfunctions/blasius.h /honee/qfunctions/channel.h /honee/qfunctions/densitycurrent.h /honee/qfunctions/differential_filter.h /honee/qfunctions/gaussianwave.h /honee/qfunctions/monitor_cfl.h /honee/qfunctions/monitor_totalkineticenergy.h /honee/qfunctions/newtonian.h /honee/qfunctions/newtonian_state.h /honee/qfunctions/newtonian_types.h /honee/qfunctions/riemann_solver.h /honee/qfunctions/sgs_dd_model.h /honee/qfunctions/sgs_dd_training.h /honee/qfunctions/spanstats/cflpe.h /honee/qfunctions/spanstats/turbulence.h /honee/qfunctions/stabilization.h /honee/qfunctions/stabilization_types.h /honee/qfunctions/stg_shur14.h /honee/qfunctions/stg_shur14_type.h /honee/qfunctions/taylorgreen.h /honee/qfunctions/utils.h /honee/qfunctions/velocity_gradient_projection.h /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/honee.c /honee/src/log_events.c /honee/src/mat-ceed.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/smartsim/smartsim.c /honee/src/smartsim/solution.c /honee/src/smartsim_weak.c /honee/src/spanstats/cflpe.c /honee/src/spanstats/spanstats.c /honee/src/spanstats/turbulence.c /honee/src/strong_boundary_conditions.c /honee/tests/output/y0flow_solution_output.npy /honee/tests/smartsim_regression_framework.py
c9f37605	28-Jul-2025	Mohammed Amin <mohammed.amin@colorado.edu>	(!133) Unify `Units` setup /honee/CHANGELOG.md /honee/Makefile advection.yaml advection_bl.yaml advection_wave.yaml navierstokes.c /honee/problems/advection.c /honee/problems/bc_freestream.c /honee/problems/bc_outflow.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/densitycurrent.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/problems/shocktube.c /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/setupdm.c /honee/tests/junit.py /honee/tests/junit_common.py
0aab7249	06-Jul-2025	James Wright <james@jameswright.xyz>	test: Add test for -ts_monitor_spanstats_cflpe /honee/CHANGELOG.md /honee/Makefile /honee/conf.py /honee/doc/auxiliary.md navierstokes.c /honee/include/differential_filter.h /honee/include/honee.h /honee/include/navierstokes.h /honee/include/nodal_projection.h /honee/include/petsc-ceed-utils.h /honee/include/smartsim.h /honee/include/spanstats.h /honee/problems/advection.c /honee/problems/blasius.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/problems/shocktube.c /honee/qfunctions/mass.h /honee/qfunctions/monitor_cfl.h /honee/qfunctions/numerics.h /honee/qfunctions/setupgeo_helpers.h /honee/qfunctions/spanstats/cflpe.h /honee/qfunctions/spanstats/turbulence.h /honee/qfunctions/utils.h /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/grid_anisotropy_tensor.c /honee/src/honee-file.c /honee/src/honee-mass.c /honee/src/honee.c /honee/src/mat-ceed.c /honee/src/misc.c /honee/src/monitor_cfl.c /honee/src/monitor_totalkineticenergy.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/smartsim/smartsim.c /honee/src/smartsim_weak.c /honee/src/spanstats/cflpe.c /honee/src/spanstats/spanstats.c /honee/src/spanstats/turbulence.c /honee/tests/output/cflpe-spanstats-stats.bin /honee/tests/stats_test.yaml
6a9fb8ef	16-Jun-2025	James Wright <james@jameswright.xyz>	feat: Convert HONEE to PetscObject /honee/doc/examples.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/newtonian.c /honee/qfunctions/advection_types.h /honee/qfunctions/differential_filter.h /honee/qfunctions/newtonian_types.h /honee/qfunctions/stabilization_types.h /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/dm_utils.c /honee/src/honee.c /honee/src/spanstats.c
96f347c2	12-Jun-2025	James Wright <james@jameswright.xyz>	feat(bc_def): Convert BCDefinition to a PetscObject navierstokes.c /honee/include/bc_definition.h /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/bc_freestream.c /honee/problems/bc_outflow.c /honee/problems/bc_slip.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/problems/shocktube.c /honee/problems/stg_shur14.c /honee/qfunctions/bc_freestream.h /honee/qfunctions/bc_slip.h /honee/qfunctions/blasius.h /honee/src/bc_definition.c /honee/src/boundary_condition.c /honee/src/setuplibceed.c
d3c60aff	05-Jun-2025	James Wright <james@jameswright.xyz>	refactor: Delete SimpleBC struct /honee/CHANGELOG.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/densitycurrent.c /honee/problems/eulervortex.c /honee/problems/gaussianwave.c /honee/problems/newtonian.c /honee/problems/shocktube.c /honee/problems/taylorgreen.c /honee/src/boundary_condition.c /honee/src/cloptions.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/src/strong_boundary_conditions.c
d6cac220	05-Jun-2025	James Wright <james@jameswright.xyz>	bc(inflow): Convert inflow bc to use BCDef functions navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/blasius.c /honee/problems/channel.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/problems/stg_shur14.c /honee/problems/stg_shur14.h /honee/src/boundary_condition.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/src/strong_boundary_conditions.c
f978755d	05-Jun-2025	James Wright <james@jameswright.xyz>	bc(outflow): Convert outflow bc to use BCDef functions navierstokes.c /honee/include/navierstokes.h /honee/problems/bc_outflow.c /honee/problems/channel.c /honee/problems/eulervortex.c /honee/problems/newtonian.c /honee/src/boundary_condition.c /honee/src/setuplibceed.c
d4e423e7	05-Jun-2025	James Wright <james@jameswright.xyz>	bc(freestream): Convert freestream bc to use BCDef functions navierstokes.c /honee/include/navierstokes.h /honee/problems/bc_freestream.c /honee/problems/gaussianwave.c /honee/problems/newtonian.c /honee/src/boundary_condition.c /honee/src/setuplibceed.c
5e79d562	11-Oct-2024	James Wright <james@jameswright.xyz>	bc(slip): Convert slip bc to use BCDef functions /honee/.gitlab-ci.yml /honee/AUTHORS /honee/CHANGELOG.md /honee/Makefile /honee/README.md navierstokes.c /honee/include/bc_definition.h /honee/include/dm-utils.h /honee/include/honee.h /honee/include/navierstokes.h /honee/problems/bc_freestream.c /honee/problems/bc_outflow.c /honee/problems/bc_slip.c /honee/problems/newtonian.c /honee/qfunctions/bc_freestream.h /honee/qfunctions/bc_outflow.h /honee/qfunctions/blasius.h /honee/src/bc_definition.c /honee/src/boundary_condition.c /honee/src/dm_utils.c /honee/src/honee-config.c /honee/src/honee_versioning.c /honee/src/monitor_totalkineticenergy.c /honee/src/qdata.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/tests/output/taylorgreen_totalke.csv
c52fa185	31-Mar-2025	James Wright <james@jameswright.xyz>	Merge MR !108, 'jrwrigh/spanstats_tsmonitor', into 'main' refactor: Make spanwise statistics generic See merge request phypid/honee!108 /honee/CHANGELOG.md /honee/doc/auxiliary.md blasius.yaml navierstokes.c /honee/include/honee.h /honee/include/navierstokes.h /honee/include/spanstats.h /honee/src/cloptions.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/spanstats.c /honee/src/turb_spanstats.c /honee/tests/stats_test.yaml
78c5b8e5	30-Mar-2025	James Wright <james@jameswright.xyz>	refactor: Use TSMonitorSetFromOptions for spanstats /honee/.gitlab-ci.yml /honee/CHANGELOG.md /honee/doc/auxiliary.md /honee/doc/examples.md /honee/doc/runtime_options.md /honee/doc/theory.md blasius.yaml navierstokes.c /honee/include/bc_definition.h /honee/include/honee.h /honee/include/navierstokes.h /honee/include/spanstats.h /honee/index.md /honee/qfunctions/advection.h /honee/src/bc_definition.c /honee/src/cloptions.c /honee/src/honee-file.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/spanstats.c /honee/src/turb_spanstats.c /honee/tests/stats_test.yaml
56fab57d	31-Mar-2025	James Wright <james@jameswright.xyz>	test: Modify TG test for background velocity /honee/.gitlab-ci.yml /honee/CHANGELOG.md /honee/doc/auxiliary.md /honee/doc/examples.md /honee/doc/runtime_options.md /honee/doc/theory.md navierstokes.c /honee/include/bc_definition.h /honee/index.md /honee/problems/taylorgreen.c /honee/qfunctions/advection.h /honee/qfunctions/taylorgreen.h /honee/src/bc_definition.c /honee/src/cloptions.c /honee/src/honee-file.c /honee/src/setupts.c /honee/tests/output/taylor-green-IC.bin
e987420b	15-Feb-2025	James Wright <james@jameswright.xyz>	fix: Change spanstats struct to pointer-to-struct /honee/.gitlab-ci.yml /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/include/navierstokes.h /honee/problems/advection.c /honee/problems/newtonian.c /honee/src/monitor_totalkineticenergy.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/turb_spanstats.c
2a9a4b51	10-Dec-2024	James Wright <james@jameswright.xyz>	style: Remove pointless pointer There's no need for `Q` to be passed as a pointer; it already exists navierstokes.c /honee/include/navierstokes.h /honee/src/setupts.c
b3b24828	10-Dec-2024	James Wright <james@jameswright.xyz>	feat(newt): Add div(Fdiff) projection to RHS /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/include/log_events.h /honee/include/navierstokes.h /honee/problems/channel.c /honee/problems/newtonian.c /honee/qfunctions/newtonian.h /honee/src/honee-ksp.c /honee/src/log_events.c /honee/src/petsc_ops.c /honee/src/setupts.c /honee/src/strong_boundary_conditions.c /honee/tests/channel_divdiff_verify.yaml /honee/tests/output/channel_div_diff_verify_indirect_explicit.bin
ea615d4c	07-Dec-2024	James Wright <james@jameswright.xyz>	style: Refactor fluids -> HONEE navierstokes.c /honee/include/log_events.h /honee/problems/advection.c /honee/problems/densitycurrent.c /honee/problems/newtonian.c /honee/problems/sgs_dd_model.c /honee/problems/shocktube.c /honee/problems/torch/sgs_model_torch.cpp /honee/qfunctions/advection.h /honee/qfunctions/blasius.h /honee/qfunctions/channel.h /honee/qfunctions/densitycurrent.h /honee/qfunctions/eulervortex.h /honee/qfunctions/mass.h /honee/qfunctions/newtonian.h /honee/qfunctions/setupgeo.h /honee/qfunctions/setupgeo2d.h /honee/qfunctions/setupgeo_helpers.h /honee/qfunctions/shocktube.h /honee/src/cloptions.c /honee/src/diff_flux_projection.c /honee/src/differential_filter.c /honee/src/honee-file.c /honee/src/log_events.c /honee/src/monitor_cfl.c /honee/src/petsc_ops.c /honee/src/setupdm.c /honee/src/setuplibceed.c /honee/src/setupts.c /honee/src/smartsim/sgs_dd_training.c /honee/src/smartsim/smartsim.c /honee/src/velocity_gradient_projection.c /honee/tests/output/adv-rotation-cosine.bin /honee/tests/output/adv-rotation-implicit-stab-supg.bin /honee/tests/output/adv-skew.bin /honee/tests/output/adv-translation-implicit-stab-su.bin /honee/tests/output/adv2d-boundary-layer-ic.bin /honee/tests/output/adv2d-rotation-explicit-stab-supg-consistent-mass.bin /honee/tests/output/adv2d-rotation-explicit-strong.bin /honee/tests/output/adv2d-rotation-implicit-stab-supg.bin /honee/tests/output/adv2d-wave-sine.bin /honee/tests/output/adv2d-wave-square-direct_divdiff.bin /honee/tests/output/adv2d-wave-square-indirect_divdiff.bin /honee/tests/output/blasius-bc_slip.bin /honee/tests/output/blasius-bc_slip_indirect.bin /honee/tests/output/blasius-sgs-data-driven.bin /honee/tests/output/blasius.bin /honee/tests/output/blasius_STG.bin /honee/tests/output/blasius_STG_strongBC.bin /honee/tests/output/blasius_STG_weakT.bin /honee/tests/output/blasius_diff_filter_aniso_vandriest.bin /honee/tests/output/blasius_diff_filter_iso.bin /honee/tests/output/channel-prim.bin /honee/tests/output/channel.bin /honee/tests/output/dc-explicit.bin /honee/tests/output/dc-implicit-stab-none.bin /honee/tests/output/euler-explicit.bin /honee/tests/output/euler-implicit.bin /honee/tests/output/flatplate-STG.bin /honee/tests/output/gaussianwave-IDL-entropy.bin /honee/tests/output/gaussianwave-IDL.bin /honee/tests/output/gaussianwave-cgns-load.bin /honee/tests/output/gaussianwave-explicit.bin /honee/tests/output/gaussianwave-shell.bin /honee/tests/output/shocktube-explicit-su-yzb.bin /honee/tests/output/taylor-green-IC.bin /honee/tests/output/taylor-green.bin /honee/tests/output/turb-spanstats-IC.bin /honee/tests/output/turb-spanstats-stats.bin /honee/tests/stats_test.yaml
87fd7f33	07-Dec-2024	James Wright <james@jameswright.xyz>	feat: Add -ts_monitor_cfl /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/include/navierstokes.h /honee/problems/newtonian.c /honee/qfunctions/monitor_cfl.h /honee/src/monitor_cfl.c /honee/src/monitor_totalkineticenergy.c /honee/src/setupdm.c /honee/src/setupts.c /honee/tests/output/adv2d-wave-square-direct_divdiff_cfl.csv
c4a0f6c7	19-Nov-2024	James Wright <james@jameswright.xyz>	test: Add CGNS load IC test navierstokes.c /honee/src/setupdm.c /honee/tests/gaussianwave_cgns_load.yaml /honee/tests/gaussianwave_test_5.cgns /honee/tests/junit.py /honee/tests/output/fluids-navierstokes-gaussianwave-cgns-load.bin
dafcea5d	19-Nov-2024	James Wright <james@jameswright.xyz>	test: Check -options_left before checking options /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/include/navierstokes.h /honee/src/cloptions.c /honee/src/honee-file.c /honee/src/setupdm.c /honee/src/setupts.c /honee/tests/junit.py
354560d1	02-Dec-2024	James Wright <james@jameswright.xyz>	feat: Add max_wall_time PostStep /honee/CHANGELOG.md /honee/doc/runtime_options.md navierstokes.c /honee/include/navierstokes.h /honee/src/cloptions.c /honee/src/setupts.c
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