Merge MR !165, 'jrwrigh/plex_filter_fix', into 'main'

fix(upstream): Update DMPlexFilter with new arguments from petsc:!8876

See merge request phypid/honee!165

fix(upstream): PETSc changes to PetscCtxDestroyFn

Merge MR !161, 'jrwrigh/dm-utils-coords', into 'main'

feat(dm_utils): Add Coordinate-specific getter for CeedField values

See merge request phypid/honee!161

feat: Remove coordinate args from QDataBoundaryGradientGet()

feat: Remove coordinate arguments from QDataGet()

They are obtained directly from the passed in DM object

feat: Add dedicated mesh transform functionality

Mostly so that the mesh transformation can occur independently of the
coordinate scaling process.

Merge MR !160, 'jrwrigh/ratel_dm_utils', into 'main'

feat(dm-utils): Save Basis and ElemRestriction to DM upon creation

Closes #8

See merge request phypid/honee!160

feat: Replace honee->elem_restr_q and basis_q with creation routines

feat: Add DMLABEL_DEFAULT and DMLABEL_DEFAULT_VALUE

Helper variables to make it more clear what is being done for the
default DMLabel and the default label value as well.

style(dm-utils): Rename Basis routines to match ElemRestriction

Merge MR !157, 'jrwrigh/format_parentesis_break', into 'main'

style: Change clang-format to penalize newline after open ()

See merge request phypid/honee!157

style: Change clang-format to penalize newline after open ()

Merge MR !155, 'jrwrigh/libCEED_Function_Changes', into 'main'

upstream: Update libCEED Function names

See merge request phypid/honee!155

WIP: Updated libCEED Functions

Merge MR !148, 'jrwrigh/newt_fluid_properties', into 'main'

refactor: Extract Newtonian fluid properties from primary Newtonian context

Closes #38

See merge request phypid/honee!148

refactor: Extract NewtonianIGProperties from NewtonianIdealGasContext

refactor: Remove c_tau from Newtonian options

It isn't implemented anyways.

TODO: Need to edit documentation to reflect the change (if Newtonian has
any lingering references to c_tau)

Merge MR !146, 'jrwrigh/refactor', into 'main'

refactor: Use compound literals for struct initialization

See merge request phypid/honee!146

style: Get local section once for divFdiff projection setup

refactor: Use compound literals for struct setting

Using compound literals to initialize structs is often either easier to
read or more compact than setting struct members individually
one-by-one.

Merge MR !145, 'jrwrigh/refactor', into 'main'

refactor: Change default struct in Newtonian, change Calloc1() -> New(), DivFDiff changes

See merge request phypid/honee!145

refactor(divFdiff): Make divFdiff method explicit argument in setup

refactor(newt): Initialize defaults directly into newtonian_ig_ctx

Merge MR !144, 'jrwrigh/fix_newtonian_component_naming', into 'main'

fix: Correctly set component labels by state variables

See merge request phypid/honee!144

fix: Correctly set component labels by state variables

Bug introduced in !139 accidentally set the component names before the
state variable option was read in, therefore it always printed out the
c

fix: Correctly set component labels by state variables

Bug introduced in !139 accidentally set the component names before the
state variable option was read in, therefore it always printed out the
conservative variable labels.

In addition to fixing this, I did quite a bit of reorganization of the
`NS_NEWTONIAN_IG()` function.

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