Merge MR !165, 'jrwrigh/plex_filter_fix', into 'main'

fix(upstream): Update DMPlexFilter with new arguments from petsc:!8876

See merge request phypid/honee!165

fix(upstream): PETSc changes to PetscCtxDestroyFn

Merge MR !161, 'jrwrigh/dm-utils-coords', into 'main'

feat(dm_utils): Add Coordinate-specific getter for CeedField values

See merge request phypid/honee!161

feat: Remove honee member coordinate references

feat: Remove coordinate arguments from QDataGet()

They are obtained directly from the passed in DM object

Merge MR !160, 'jrwrigh/ratel_dm_utils', into 'main'

feat(dm-utils): Save Basis and ElemRestriction to DM upon creation

Closes #8

See merge request phypid/honee!160

feat: Replace honee->elem_restr_q and basis_q with creation routines

feat: Add DMLABEL_DEFAULT and DMLABEL_DEFAULT_VALUE

Helper variables to make it more clear what is being done for the
default DMLabel and the default label value as well.

style(dm-utils): Rename Basis routines to match ElemRestriction

Merge MR !157, 'jrwrigh/format_parentesis_break', into 'main'

style: Change clang-format to penalize newline after open ()

See merge request phypid/honee!157

style: Change clang-format to penalize newline after open ()

Merge MR !153, 'jrwrigh/checkbadSource', into 'main'

style: Add checkbadSource

See merge request phypid/honee!153

style: Corrections from make checkbadSource

Merge MR !148, 'jrwrigh/newt_fluid_properties', into 'main'

refactor: Extract Newtonian fluid properties from primary Newtonian context

Closes #38

See merge request phypid/honee!148

refactor: Extract NewtonianIGProperties from NewtonianIdealGasContext

Merge MR !146, 'jrwrigh/refactor', into 'main'

refactor: Use compound literals for struct initialization

See merge request phypid/honee!146

refactor: Use compound literals for struct setting

Using compound literals to initialize structs is often either easier to
read or more compact than setting struct members individually
one-by-one.

Merge MR !122, 'jrwrigh/honee_petscobject', into 'main'

feat: Convert Honee to PetscObject, remove auxillary structs

See merge request phypid/honee!122

feat: Add Honee{Get,Set,Has}Container functions

This embeds some helpful checks into the container additions

feat: Move sgs_dd_data into Honee container

feat: Move grad_velo_proj into Honee container

Merge MR !90, 'jrwrigh/renaming', into 'main'

style: Refactor fluids -> HONEE

See merge request phypid/honee!90

style: Refactor fluids -> HONEE

Merge MR !73, 'jrwrigh/destroy_ceeds', into 'main'

fix: Destroy Ceed objects due to libCEED #1702

See merge request phypid/honee!73

fix: Destroy Ceed objects due to libCEED #1702