Merge MR !165, 'jrwrigh/plex_filter_fix', into 'main'

fix(upstream): Update DMPlexFilter with new arguments from petsc:!8876

See merge request phypid/honee!165

fix(upstream): PETSc changes to PetscCtxDestroyFn

Merge MR !153, 'jrwrigh/checkbadSource', into 'main'

style: Add checkbadSource

See merge request phypid/honee!153

style: Corrections from make checkbadSource

Merge MR !148, 'jrwrigh/newt_fluid_properties', into 'main'

refactor: Extract Newtonian fluid properties from primary Newtonian context

Closes #38

See merge request phypid/honee!148

refactor: Extract NewtonianIGProperties from NewtonianIdealGasContext

Merge MR !146, 'jrwrigh/refactor', into 'main'

refactor: Use compound literals for struct initialization

See merge request phypid/honee!146

refactor: Use compound literals for struct setting

Using compound literals to initialize structs is often either easier to
read or more compact than setting struct members individually
one-by-one.

Merge MR !145, 'jrwrigh/refactor', into 'main'

refactor: Change default struct in Newtonian, change Calloc1() -> New(), DivFDiff changes

See merge request phypid/honee!145

style: Change PetscCalloc1(1, ...) into PetscNew(...)

Merge MR !136, 'Amin/mean_only_fix', into 'main'

Amin/mean only fix

Closes #36

See merge request phypid/honee!136

(!136) Amin/mean only fix

Merge MR !118, 'jrwrigh/rename_jac_data_size', into 'main'

style: jac_data_size -> num_comps_jac_data

See merge request phypid/honee!118

Merge MR !116, 'jrwrigh/update_jac_data_size_bc', into 'main'

feat(bc): Shrink jac_data_size to that being used

Closes #30

See merge request phypid/honee!116

Merge MR !67, 'jrwrigh/bc_QF_setup', into 'main'

Use BCDefinition for setting up boundary integral QFunctions

Closes #27

See merge request phypid/honee!67

style: jac_data_size -> num_comps_jac_data

Includes:
- jac_data_size_sur -> num_comps_jac_data
- jac_data_size_vol -> num_comps_jac_data
- jac_data_size -> num_comps_jac_data

feat(bc): Shrink jac_data_size to that being used

bc(inflow): Convert inflow bc to use BCDef functions

Merge MR !80, 'jrwrigh/fix_stg', into 'main'

fix(stg): Skip dx when using strong STG

See merge request phypid/honee!80

fix(stg): Skip dx when using strong STG

Strong STG determines the element sizes based on the elements
themselves, therefore dx doesn't need to be calculated from the
box_faces flag (and it will erro

fix(stg): Skip dx when using strong STG

Strong STG determines the element sizes based on the elements
themselves, therefore dx doesn't need to be calculated from the
box_faces flag (and it will error out when it tries to do so)

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Merge MR !29, 'jrwrigh/consolidate_structs', into 'main'

refactor: Change `User` -> `Honee`

See merge request phypid/honee!29

refactor: Change User -> Honee

Merge branch 'jrwrigh/refactor' into 'main'

refactor: Use utils in setupgeo helpers, other misc refactors

See merge request phypid/honee!37

style: Use Square() instead of repeated multiplication

Merge branch 'jrwrigh/refactor' into 'main'

refactor: Make consistent QF naming, cleanup navierstokes.h

Closes #9

See merge request phypid/honee!26