Merge pull request #1581 from CEED/jrwrigh/pytorch_external_sgs

fluids: Add PyTorch external DD SGS evaluation

fluids: Add log_events.c/h, PetscLogEvent for torch

To have the log_events accessbile to torch (in C++), I needed to
separate out the header file containing the extern PetscLogEvent
declarations. Wh

fluids: Add log_events.c/h, PetscLogEvent for torch

To have the log_events accessbile to torch (in C++), I needed to
separate out the header file containing the extern PetscLogEvent
declarations. While I was at it, I figured it'd be more clear to have a
separate log_events.c file as well to have the actual "storage" of the
PetscLogEvents and the RegisterLogEvents function itself.

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fluids: Add PyTorch external DD SGS evaluation

- Rename sequential_internal -> *_ceed

Merge pull request #1573 from CEED/jrwrigh/fix_fluids_printing

fluids: Correct printing of MatTypes

fluids: Print correct Mat Types

Merge pull request #1576 from CEED/jrwrigh/update_matceed

fluids: Add back CeedOperator PetscLogEvents

fluids: Add back CeedOperator PetscLogEvents

Remove the unused fluids-based ones in favor of the built-in MatCeed
ones

Merge pull request #1562 from CEED/jrwrigh/fluids_problem_pointer

fluids: Make ProblemData a pointer to struct

fluids: Make ProblemData a pointer to struct

We basically use it as a pointer-to-struct type everywhere, so might as
well make it consistent with everything else

Merge pull request #1559 from CEED/jrwrigh/fix_memory_leaks

fix(fluids): Fix primary PETSc memory leak, others

fix(fluids): Fix primary PETSc memory leak, others

All the memory leaks reported in regression tests via `-malloc_dump`
are now related to the boundary conditions and their handling of
QFunctionCont

fix(fluids): Fix primary PETSc memory leak, others

All the memory leaks reported in regression tests via `-malloc_dump`
are now related to the boundary conditions and their handling of
QFunctionContexts, which is a much more difficult problem and will be
addressed later.

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Merge pull request #1537 from CEED/jeremy/pragma-once

Use #pragma once for non-JiT headers

minor - update copyright headers

fluids: enable reading checkpoint files as i32 or i64 (#1520)

* fluids: enable reading checkpoint files as i32 or i64

Depends on https://gitlab.com/petsc/petsc/-/merge_requests/7377

* Apply su

fluids: enable reading checkpoint files as i32 or i64 (#1520)

* fluids: enable reading checkpoint files as i32 or i64

Depends on https://gitlab.com/petsc/petsc/-/merge_requests/7377

* Apply suggestions from code review

Co-authored-by: James Wright <james@jameswright.xyz>

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Co-authored-by: James Wright <james@jameswright.xyz>

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Merge pull request #1517 from CEED/jrwrigh/ratel_sync

fluids: Sync with Ratel changes

fluids: Sync with Ratel, get ceed-utils.h

Merge pull request #1510 from CEED/jrwrigh/fluids_matceed

fluids: Add MatCeed

fluids: Add KSPSetFromOptions_WithMatCeed

fluids: Add LogEvent for VeloGradProj and DiffFilter

Merge balin/smartsim branch into main with timers for SmartRedis API calls (#1480)


---------

Co-authored-by: James Wright <james@jameswright.xyz>
Co-authored-by: Riccardo Balin <balin@aurora-u

Merge balin/smartsim branch into main with timers for SmartRedis API calls (#1480)


---------

Co-authored-by: James Wright <james@jameswright.xyz>
Co-authored-by: Riccardo Balin <balin@aurora-uan-0012.hostmgmt.cm.aurora.alcf.anl.gov>

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Merge pull request #1479 from CEED/jrwrigh/fix_mat_reporting

fluids: Report both amat and pmat types

fluids: Report both amat and pmat types

Merge pull request #1259 from CEED/jrwrigh/fluids-cleanup

fluids: Misc cleanup

fluids: Misc changes to functions

fluids: Rename files with *_NS suffix