Merge pull request #1567 from CEED/jrwrigh/refactor_setuplibceed

fluids: Refactor primary Ceed Object creation routines

fluids: Remove op_*_vol from user struct

And some other misc style changes

fluids: Consolidate QF and Op creation for BCs

fix(fluids): Make local Vecs use PETSC_COMM_SELF in turbstats

Also adds check in CeedOperatorCreateLocalVecs to verify that comm is of
size 1.

fluids: Correct PetscOptionsDeprecated usage

It will automatically replace the old option with the new option if
`PetscOptionsDeprecated` is specified before the new option name.

fluids: Consolidate QF and Op creation blocks

Merge pull request #1564 from CEED/jrwrigh/ratel_copying

fluids: Updates from Ratel

fluids: Add MatCeedView (from Ratel)

https://gitlab.com/micromorph/ratel/-/merge_requests/817

Merge pull request #1562 from CEED/jrwrigh/fluids_problem_pointer

fluids: Make ProblemData a pointer to struct

fluids: Make ProblemData a pointer to struct

We basically use it as a pointer-to-struct type everywhere, so might as
well make it consistent with everything else

fluids - use VecGetState

Merge pull request #1558 from CEED/jrwrigh/smartsim_multiple_filter_widths

fluids: Add option for multiple filter widths during in-situ SGS training

fluids: moved SmartRedis send of time step number after all training data is computed

fix(fluids): Fix primary PETSc memory leak, others

All the memory leaks reported in regression tests via `-malloc_dump`
are now related to the boundary conditions and their handling of
QFunctionCont

fix(fluids): Fix primary PETSc memory leak, others

All the memory leaks reported in regression tests via `-malloc_dump`
are now related to the boundary conditions and their handling of
QFunctionContexts, which is a much more difficult problem and will be
addressed later.

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fluids: Rename PetscSmartRedisCall -> PetscCallSmartRedis

fluids: Compute DiffFilter RHS only if solution changes

fluids: Multiple filter widths for SGS training

fluids: Misc cleanup of SmartSim and SGS training

Merge pull request #1533 from CEED/jrwrigh/smartsim_array_size

fluids: Change SmartSim sizeInfo to show minimum global array size

Merge pull request #1554 from CEED/jrwrigh/petsc_fix_localization

fluids: Update topological periodicity localization

fluids: Update topological periodicity localization

See https://github.com/CEED/libCEED/issues/1470 for details.
Relies on PETSc MR in https://gitlab.com/petsc/petsc/-/merge_requests/7438

tl;dr is

fluids: Update topological periodicity localization

See https://github.com/CEED/libCEED/issues/1470 for details.
Relies on PETSc MR in https://gitlab.com/petsc/petsc/-/merge_requests/7438

tl;dr is that the localization of the continuous coordinate DM to the
discontinuous coordinate DM (i.e. the cell DM) must be done *after* the
coordinate DM is set to the tensor product ordering

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fluids: Add stabilized mass for advection

This enables "full" SUPG for the advection problem using explicit time
integrators

fluids: Put min global array size for SmartSim

Merge pull request #1539 from CEED/jrwrigh/explicit_ns

fluids: Make Newtonian BCs compatible with explicit timestepping, add test

fluids: Make BCs compatible with explicit TS