Merge MR !165, 'jrwrigh/plex_filter_fix', into 'main'

fix(upstream): Update DMPlexFilter with new arguments from petsc:!8876

See merge request phypid/honee!165

fix(upstream): -ts_dt -> -ts_time_step

Merge MR !161, 'jrwrigh/dm-utils-coords', into 'main'

feat(dm_utils): Add Coordinate-specific getter for CeedField values

See merge request phypid/honee!161

feat: Add dedicated mesh transform functionality

Mostly so that the mesh transformation can occur independently of the
coordinate scaling process.

Merge MR !128, 'jrwrigh/spanstats_numerics', into 'main'

feat: Add Spanwise Statistics collection for CFL and Peclet number

See merge request phypid/honee!128

test: Add test for -ts_monitor_spanstats_cflpe

Merge MR !108, 'jrwrigh/spanstats_tsmonitor', into 'main'

refactor: Make spanwise statistics generic

See merge request phypid/honee!108

refactor: Use TSMonitorSetFromOptions for spanstats

Merge MR !90, 'jrwrigh/renaming', into 'main'

style: Refactor fluids -> HONEE

See merge request phypid/honee!90

style: Refactor fluids -> HONEE

Merge MR !74, 'jrwrigh/refactor_restart', into 'main'

Refactor continue/restart options and backend

See merge request phypid/honee!74

refactor: Remove -continue, add use_continue_file internally

Merge branch 'jrwrigh/rearrange' into 'main'

Rearrange files into more future-oriented locations

See merge request phypid/honee!15

chore: Move yamls, etc to examples directory

chore: Get tests back up and running