Merge MR !104, 'jrwrigh/fix_help', into 'main'

fix: Make -help flag work correctly

See merge request phypid/honee!104

fix: Make -help flag work correctly

Merge MR !102, 'jrwrigh/checkpoint_interval', into 'main'

feat: Change default checkpoint_interval to 0

See merge request phypid/honee!102

feat: Change default checkpoint_interval to 0

Binary files are no longer the standard restart file format (CGNS is),
therefore this should be avoided.

Merge MR !101, 'jrwrigh/tstimespan', into 'main'

feat: Add `-ts_eval_solutions_view` to output TSEvaluationSolutions

See merge request phypid/honee!101

feat: Add -ts_eval_solutions_view for -ts_eval_times

Writes out intermediate solutions specified by `-ts_eval_times`

doc: Add dev note for HoneeCheckFileExtension

Merge MR !100, 'jrwrigh/spanstats_pointer_struct', into 'main'

fix: Change `SpanStatsData` struct to pointer-to-struct

See merge request phypid/honee!100

fix: Change spanstats struct to pointer-to-struct

Merge MR !99, 'jrwrigh/spanstats_printing', into 'main'

feat: Spanstats file writing log statement

See merge request phypid/honee!99

feat: Add log statement for spanstats file writing

fix: Don't redirect spanstats struct directly from honee

Merge MR !98, 'jrwrigh/fix-totalke', into 'main'

fix(totalke): Use RHS or IFunction Op, whichever exists

See merge request phypid/honee!98

fix(totalke): Use RHS or IFunction Op, whichever exists

Merge MR !97, 'jrwrigh/disable-rocm-ci', into 'main'

ci: Disable ROCm/HIP CI job

See merge request phypid/honee!97

ci: Disable ROCm/HIP CI job

AMD card was removed from Noether, so CI job won't complete

Merge MR !96, 'jrwrigh/mass_ksp_preonly', into 'main'

TEMP fix: Manually use KSP_PCApply in RHSFunction

See merge request phypid/honee!96

TEMP fix: Manually use KSP_PCApply in RHSFunction

Run PCApply manually if using ksp_type preonly -pc_type jacobi

This is to avoid an AllReduce call in KSPSolve_Preonly, which causes
significant slo

TEMP fix: Manually use KSP_PCApply in RHSFunction

Run PCApply manually if using ksp_type preonly -pc_type jacobi

This is to avoid an AllReduce call in KSPSolve_Preonly, which causes
significant slowdowns for lumped mass matrix solves.
See https://gitlab.com/petsc/petsc/-/merge_requests/8048 for more details
and a possible fix. This commit should be reverted once that MR moves
through

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Merge MR !95, 'jrwrigh/mass_ksp_view', into 'main'

feat: Add -mass_ksp_view_pre_ts_solve

See merge request phypid/honee!95

feat: Add -mass_ksp_view_pre_ts_solve

Views mass ksp once before solve. Also sets up the KSP so that the
information is complete.

style: Remove pointless pointer

There's no need for `Q` to be passed as a pointer; it already exists

Merge MR !94, 'jrwrigh/explicit_div_diff_flux', into 'main'

feat: Add div(Fdiff) projection to Newtonian RHS

See merge request phypid/honee!94

feat(newt): Add div(Fdiff) projection to RHS

refactor(newtonian): Small refactor to IFunction

Merge MR !93, 'jrwrigh/ksp_converged_reason_hist', into 'main'

feat: Add -ksp_post_solve_residual

See merge request phypid/honee!93