libCEED-0.7

Merge branch 'master' into valeria/NSfixes

Merge pull request #523 from CEED/jed/breathe-4.17

Jed/breathe 4.17

doc: switch to Breathe 4.17 and C domain

Merge pull request #496 from CEED/v0.6changelog

v0.6: Release notes

libCEED-0.6

Co-authored-by: Valeria Barra <valeriabarra21@gmail.com>

Merge pull request #446 from CEED/user-manual

Sphinx user manual published at libceed.readthedocs.io

doc: process restrict qualifier as predefined

Breathe and/or Sphinx lacks support for restrict qualifiers, so use
the workaround suggested here to hide the restrict qualifier from
Breathe/Sphinx.

h

doc: process restrict qualifier as predefined

Breathe and/or Sphinx lacks support for restrict qualifiers, so use
the workaround suggested here to hide the restrict qualifier from
Breathe/Sphinx.

https://github.com/michaeljones/breathe/issues/477#issuecomment-593145041

An alternative is to use the C domain for *.c and *.h files. This
handles restrict, but reduces enum names to their numeric value. Once
that Breathe/Sphinx bug is fixed, we could skip the restrict elision
in favor of using the C domain.

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doc: convert to Sphinx documentation at libceed.readthedocs.io

Some technical notes about the expanded docs/process:

* Doxygen is now restricted to API documentation. Sphinx docs are
incomplete

doc: convert to Sphinx documentation at libceed.readthedocs.io

Some technical notes about the expanded docs/process:

* Doxygen is now restricted to API documentation. Sphinx docs are
incomplete surrogates due to not hyperlinking code listings, though
we hope the Doxygen site can be removed eventually.

* PDF output uses XeTeX (unicode and OTF fonts) with TeX Gyre Pagella
and DejaVu Sans Mono. You may need to install these fonts in order
to build the PDF users manual.

* Obtaining the author list from Git has not worked on
ReadTheDocs (`git shortlog` is empty even though `git log` is not),
so we automatically generate it on developer machines with `make
doc`. If the author information is incorrect/mangled, edit .mailmap
to fix the mapping.

* Math semantics are based on the description here
https://github.com/sphinx-doc/sphinx/issues/3785

Sphinx chooses one of two setups for the maths.

* If there is a single equation, then we wrap the maths in
\begin{equation*} (or equation).

* If there are multiple equations (as determined by the presence of
an empty line), then we wrap the maths first in \begin{aligned}
and then in \begin{align*} (or align).

Co-authored-by: Jeremy L. Thompson <jeremy.thompson@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>

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libCEED-0.5

QFunction Create by Name (#311)

This PR adds a QFunction gallery to libCEED with 1D, 2D, and 3D mass and Poisson operators.

Closes issue #37, issue #340

* Add QFunction gallery, rename focca

QFunction Create by Name (#311)

This PR adds a QFunction gallery to libCEED with 1D, 2D, and 3D mass and Poisson operators.

Closes issue #37, issue #340

* Add QFunction gallery, rename focca

* Gallery - add initial QFunctions

* Add a test for using the QF gallery

* Modify ex1 to use gallery

* Add multiple test configs to tap

* Move output to test directory

* Update junit

* Add OCCA galley exception

* Add ex2

* Update ex2 for dim->ncompx

* Gallery - modify to work for CUDA as is

* Update Documentation

* Gallery - typo fix

* Gallery - convention change, postappend qfunction family variant

* Gallery - update template with new name checking convention

* Gallery - condense diff3DBuild QFunction

* Gallery - rename diff -> poisson

* Gallery - clarify poisson3DBuild comment

* Gallery - use Pragma SIMD, store Qdata in Voigt convention

* Examples - Convert BP3-6 to Voigt convention

* Examples - add cl option to switch between header and gallery qfs in CEED examples

* Examples - clean up construction of QF name

* Gallery - Switch to PascalCase for gallery names

* Doc - fix function type page

* Interface - Make sure strncpy result is null terminated

* Gallery - Update Poisson 2/3D Apply to new QF body

* make style

* make style - fix worst style problems

* make style - add gallery to make style

* Doc - update documentation errors and inconsistencies

* Examples - test ex1 ex2 with and without gallary

* Examples - reduce testing of ex1/ex2 without gallery, clean up non-gallery qfunctions

* MFEM - revert another make style mistake

* Manual make style updates

* Doc - update function documentation page

* Style updates, document test numbering conventions

* doc: resolve ambiguous image location warning, allow more Dot nodes

* Tests - style and cast cleanup

* Tests - fix README indentation

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Merge pull request #324 from CEED/jeremy/cuda-gen-doc

Doc - Add CUDA-Gen to Doxygen

Doc - Add CUDA-Gen to Doxygen

Add all backends to Doxygen (#251)

* Add all backends to Doxygen

* alphabetize

* alphabetize

libCEED 0.4

Explicit time stepping NS solver (#152)

* Squash NS example to single commit

* Update name of NS example and explicitly zero unused outputs

* rename Theta ->theta, deltaTheta -> deltatheta and

Explicit time stepping NS solver (#152)

* Squash NS example to single commit

* Update name of NS example and explicitly zero unused outputs

* rename Theta ->theta, deltaTheta -> deltatheta and make style

* Incorporate Valeria's latest changes

* Fix small bug in Advection header

* Add Valeria's latest updates from ns-working

* Update after Jed's revision

* Improve documentation

* Drop navier-stokes from allexamples

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Merge branch 'getters' of github:ceed/libceed [PR #167]

* 'getters' of github:ceed/libceed:
Improved documentation
Add Operator/QFunction field getters
Update documentation
Separate to 3 hea

Merge branch 'getters' of github:ceed/libceed [PR #167]

* 'getters' of github:ceed/libceed:
Improved documentation
Add Operator/QFunction field getters
Update documentation
Separate to 3 header files
First round of getters

[Remove unnecessary ceed-impl.h in merge.]

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Improved documentation

libCEED 0.3

Merge pull request #147 from CEED/opt-to-vec

Rename /cpu/self/opt to /cpu/self/blocked

Rename /cpu/self/opt to /cpu/self/blocked

Merge pull request #130 from CEED/doxygen-image

Add image location to Doxygen

Add image location to Doxygen

Merge branch 'cleanup' [PR #118]

* cleanup:
make style, excluding backends/{occa,magma}
make style: fix interface and include paths
docs: fix capitalization
doc: add developer notes on shape

Merge branch 'cleanup' [PR #118]

* cleanup:
make style, excluding backends/{occa,magma}
make style: fix interface and include paths
docs: fix capitalization
doc: add developer notes on shape and adopt convention
Standardize CeedIntPow and CeedIntMin
Move and document CeedIntMin, document CeedPowInt
Add function levels
Update Doxygen output naming
Add Test List to Doxygen
Doxygen interface comment updates
Remove redundant doxygen comments
Documentation updating for t500
Move ceed* files to 'inteface' directory, comment cleanup
Further CPU backend commenting and cleaning
Reorder tests, renumber for future expansion
Clean up and tighten Opt and Ref backends

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Add Test List to Doxygen