Merge pull request #1249 from CEED/jeremy/memcheck-isnan

Memcheck - warn or error on NaN after write-only access

memcheck - error if QFunction application gives NaNs

Merge pull request #1243 from CEED/jed/fix-asan-bugs

Fix -fsanitize=address bugs

Fix -fsanitize=address bugs

note: ‘snprintf’ output between 21 and 31 bytes into a destination of size 30

The assembly test had inconsistent ordering of arguments between the
qfunction itself and t

Fix -fsanitize=address bugs

note: ‘snprintf’ output between 21 and 31 bytes into a destination of size 30

The assembly test had inconsistent ordering of arguments between the
qfunction itself and the call to CeedQFunctionAddInput.

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Merge pull request #1197 from sebastiangrimberg/sjg/style-whitespace-fix

Minor style consistency updates

Fix file endings inconsistency

IWYU fixes (#1182)

* iwyu - include fixes

* iwyu - silence some iwyu output

* minor - clearer macro names

* iwyu - fix suggestion of "ceed/ceed.h" externally

* iwyu - lighter petsc heade

IWYU fixes (#1182)

* iwyu - include fixes

* iwyu - silence some iwyu output

* minor - clearer macro names

* iwyu - fix suggestion of "ceed/ceed.h" externally

* iwyu - lighter petsc headers

* iwyu - ceed/ceed.h -> ceed.h

* iwyu - cuda/hip include fixes

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Switch to clang-format (#1051)

* style - switch to clang-format

* ci - use newer libxsmm

* action - update format action

* format - consistent use of {} for multi-line if/for

* make - re

Switch to clang-format (#1051)

* style - switch to clang-format

* ci - use newer libxsmm

* action - update format action

* format - consistent use of {} for multi-line if/for

* make - remove stray newline

* make - simpler 'make format' target

* ci - use newer libxsmm

* doc - minor release note claification

* minor - minor fix

* minor - minor fix

* minor - minor fix

* minor - minor fix

* make format

* format - less aggressive alignment rules

* tidy - check for argument name mismatches

* fix newline

* format - mirror Ratel update to .clang-format

* fix merge error

* fix merge conflict

* fix merge error

* drop style in .phony list

* Update .clang-format

Co-authored-by: Jed Brown <jed@jedbrown.org>

* apply updated format

Co-authored-by: Jed Brown <jed@jedbrown.org>

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Merge pull request #1014 from CEED/jeremy/verify-read

Verify ctx read-only access

memcheck - use QFGet/RestoreContextData

Merge pull request #1002 from CEED/jeremy/format-ceed-types

Add CeedInt_FMT

fmt - add CeedInt_FMT

Merge branch 'main' into jeremy/assembly-fix

Merge pull request #991 from CEED/jeremy/memcheck-qf-ctx

Memcheck QFContext

memcheck - name QFunction output blocks

Merge pull request #858 from CEED/jeremy/dump-copy-stuff

Strip redundant/outdated license info duplication

minor - update copyright headers

Merge pull request #913 from CEED/jeremy/coo-ptrdiff

Create CeedSize as ptrdiff_t

vec - use CeedSize for vector lengths

vec/qf - initial valid/borrowed/owned split for data (#853)

* vec/qf - initial valid/borrowed/owned split for data

* vec/qf - tidy logic for checking active/stale data

* minor - add missing NU

vec/qf - initial valid/borrowed/owned split for data (#853)

* vec/qf - initial valid/borrowed/owned split for data

* vec/qf - tidy logic for checking active/stale data

* minor - add missing NULL

* doc - explain VectorTakeArray update

* minor - update error messages

* test - update error message in junit/tap

* gpu - fix stray CeedScalar vs void for QFunctionContext

* vec/qf - clarify/simplify access logic

* vec - calloc host arrays when no value set to make empty

* style - minor

* style - minor

* minor - fix error messages

* vec/qf - move data validity checking to backend interface

* gpu - add missing sync error checking for qfcontext

* gpu - homogonize use of impl for backend data to reduce confusion

* vec - clarify access conditions

* python - update test for stricter vector access

* vec - minor fixes

* minor - fix ipython change

* vec - add missing declarations in ceed/backend.h

* ctx - mirror vector borrowed data check in ctx interface

* vec - add CeedVectorGetArrayWrite

* vec - consistent use of CeedVectorGetArray vs CeedVectorGetArrayWrite

* python - small vec fixes

* doc - describe vector data semantics

* magma - update restriction

* gpu - fix restr bug I added, need to sum into target

* magma - fix restriction bug

* cpu - fix restriction bug here too

* op - fix evec allocations

* julia - fix ElemRestriction for new vector access rules

* op - double check GetArray vs Read vs Write usage

* doc - small fix

* restr - clean up read/write logic for restr

* python - add vec.array_write

* magma - typo fix

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Merge pull request #855 from CEED/jeremy/drop-oper-e-data

Remove magic number 16

op - turn magic number 16 into constant CEED_FIELD_MAX

Merge pull request #735 from CEED/jeremy/style-guide

Style Unification

style - updating C variable style

Merge pull request #716 from CEED/jed/install-backend.h

Jed/install backend.h