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402de52228-Aug-2020 jeremylt <thompson.jeremy.luke@gmail.com>

Doc - update release notes


/libCEED/Makefile
/libCEED/backends/cuda/ceed-cuda-qfunction-load.cpp
/libCEED/backends/cuda/ceed-cuda-qfunction.c
sphinx/source/releasenotes.rst
/libCEED/include/ceed-cuda.h
/libCEED/include/ceed-hip.h
/libCEED/include/ceed-impl.h
/libCEED/interface/ceed-qfunction.c
/libCEED/interface/ceed.c
461525f517-Sep-2020 Natalie Beams <246972+nbeams@users.noreply.github.com>

Consolidate CUDA backends (#623)

* Travis - allow icc failure for now

* move cuda-reg basis init kernels to cuda-shared

* move cuda-reg restrictions to cuda-ref

* change delegate ceeds for

Consolidate CUDA backends (#623)

* Travis - allow icc failure for now

* move cuda-reg basis init kernels to cuda-shared

* move cuda-reg restrictions to cuda-ref

* change delegate ceeds for previous uses of cuda-reg

* remove cuda-reg backend

* update hip restrictions to match cuda

* update backends list in README

* make style

* update release notes for removal of cuda-reg

Co-authored-by: jeremylt <thompson.jeremy.luke@gmail.com>

show more ...


/libCEED/.travis.yml
/libCEED/Makefile
/libCEED/README.rst
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator-build.cpp
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen.h
/libCEED/backends/cuda-shared/ceed-cuda-shared-basis.c
/libCEED/backends/cuda-shared/ceed-cuda-shared.c
/libCEED/backends/cuda-shared/kernels/cuda-shared-basis.cu
/libCEED/backends/cuda/ceed-cuda-restriction.c
/libCEED/backends/cuda/ceed-cuda.h
/libCEED/backends/hip/ceed-hip-restriction.c
/libCEED/backends/hip/ceed-hip.h
/libCEED/backends/magma/ceed-magma-det.c
sphinx/source/releasenotes.rst
9fd2d1ba24-Aug-2020 jeremylt <thompson.jeremy.luke@gmail.com>

Doc - update release notes to include OCCA update


sphinx/source/releasenotes.rst
68b2f3bb20-Aug-2020 jeremylt <thompson.jeremy.luke@gmail.com>

Doc - update release notes


/libCEED/.gitignore
/libCEED/.travis.yml
/libCEED/Makefile
/libCEED/README.rst
/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-qfunction.c
/libCEED/backends/cuda-gen/ceed-cuda-gen.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-basis.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-restriction.c
/libCEED/backends/cuda-reg/ceed-cuda-reg.c
/libCEED/backends/cuda-shared/ceed-cuda-shared-basis.c
/libCEED/backends/cuda-shared/ceed-cuda-shared.c
/libCEED/backends/cuda/ceed-cuda-basis.c
/libCEED/backends/cuda/ceed-cuda-operator.c
/libCEED/backends/cuda/ceed-cuda-qfunction.c
/libCEED/backends/cuda/ceed-cuda-qfunctioncontext.c
/libCEED/backends/cuda/ceed-cuda-restriction.c
/libCEED/backends/cuda/ceed-cuda-vector.c
/libCEED/backends/cuda/ceed-cuda.c
/libCEED/backends/cuda/ceed-cuda.h
/libCEED/backends/hip/ceed-hip-basis.c
/libCEED/backends/hip/ceed-hip-operator.c
/libCEED/backends/hip/ceed-hip-qfunction.c
/libCEED/backends/hip/ceed-hip-qfunctioncontext.c
/libCEED/backends/hip/ceed-hip-restriction.c
/libCEED/backends/hip/ceed-hip-vector.c
/libCEED/backends/hip/ceed-hip.c
/libCEED/backends/hip/ceed-hip.h
/libCEED/backends/magma/ceed-magma-basis.c
/libCEED/backends/magma/ceed-magma-restriction.c
/libCEED/backends/magma/ceed-magma.c
/libCEED/backends/memcheck/ceed-memcheck-qfunction.c
/libCEED/backends/occa/ceed-occa-basis.cpp
/libCEED/backends/occa/ceed-occa-basis.hpp
/libCEED/backends/occa/ceed-occa-ceed-object.cpp
/libCEED/backends/occa/ceed-occa-ceed-object.hpp
/libCEED/backends/occa/ceed-occa-context.cpp
/libCEED/backends/occa/ceed-occa-context.hpp
/libCEED/backends/occa/ceed-occa-cpu-operator.cpp
/libCEED/backends/occa/ceed-occa-cpu-operator.hpp
/libCEED/backends/occa/ceed-occa-elem-restriction.cpp
/libCEED/backends/occa/ceed-occa-elem-restriction.hpp
/libCEED/backends/occa/ceed-occa-gpu-operator.cpp
/libCEED/backends/occa/ceed-occa-gpu-operator.hpp
/libCEED/backends/occa/ceed-occa-kernels.hpp
/libCEED/backends/occa/ceed-occa-operator-args.cpp
/libCEED/backends/occa/ceed-occa-operator-args.hpp
/libCEED/backends/occa/ceed-occa-operator-field.cpp
/libCEED/backends/occa/ceed-occa-operator-field.hpp
/libCEED/backends/occa/ceed-occa-operator.cpp
/libCEED/backends/occa/ceed-occa-operator.hpp
/libCEED/backends/occa/ceed-occa-qfunction-args.cpp
/libCEED/backends/occa/ceed-occa-qfunction-args.hpp
/libCEED/backends/occa/ceed-occa-qfunction-field.cpp
/libCEED/backends/occa/ceed-occa-qfunction-field.hpp
/libCEED/backends/occa/ceed-occa-qfunction.cpp
/libCEED/backends/occa/ceed-occa-qfunction.hpp
/libCEED/backends/occa/ceed-occa-qfunctioncontext.cpp
/libCEED/backends/occa/ceed-occa-qfunctioncontext.hpp
/libCEED/backends/occa/ceed-occa-simplex-basis.cpp
/libCEED/backends/occa/ceed-occa-simplex-basis.hpp
/libCEED/backends/occa/ceed-occa-tensor-basis.cpp
/libCEED/backends/occa/ceed-occa-tensor-basis.hpp
/libCEED/backends/occa/ceed-occa-types.hpp
/libCEED/backends/occa/ceed-occa-vector.cpp
/libCEED/backends/occa/ceed-occa-vector.hpp
/libCEED/backends/occa/ceed-occa.cpp
/libCEED/backends/occa/ceed-occa.h
/libCEED/backends/occa/kernels/elem-restriction.cpp
/libCEED/backends/occa/kernels/elem-restriction.hpp
/libCEED/backends/occa/kernels/kernel-defines.hpp
/libCEED/backends/occa/kernels/simplex-basis.hpp
/libCEED/backends/occa/kernels/simplex-basis/cpu-simplex-basis.cpp
/libCEED/backends/occa/kernels/simplex-basis/gpu-simplex-basis.cpp
/libCEED/backends/occa/kernels/tensor-basis.hpp
/libCEED/backends/occa/kernels/tensor-basis/cpu/tensor-basis-1d.cpp
/libCEED/backends/occa/kernels/tensor-basis/cpu/tensor-basis-2d.cpp
/libCEED/backends/occa/kernels/tensor-basis/cpu/tensor-basis-3d.cpp
/libCEED/backends/occa/kernels/tensor-basis/gpu/tensor-basis-1d.cpp
/libCEED/backends/occa/kernels/tensor-basis/gpu/tensor-basis-2d.cpp
/libCEED/backends/occa/kernels/tensor-basis/gpu/tensor-basis-3d.cpp
/libCEED/backends/opt/ceed-opt-blocked.c
/libCEED/backends/opt/ceed-opt-operator.c
/libCEED/backends/opt/ceed-opt-serial.c
/libCEED/backends/ref/ceed-ref-basis.c
/libCEED/backends/ref/ceed-ref-operator.c
/libCEED/backends/ref/ceed-ref-qfunction.c
/libCEED/backends/ref/ceed-ref-qfunctioncontext.c
/libCEED/backends/ref/ceed-ref-restriction.c
/libCEED/backends/ref/ceed-ref-vector.c
/libCEED/backends/ref/ceed-ref.c
/libCEED/backends/ref/ceed-ref.h
/libCEED/backends/xsmm/ceed-xsmm-tensor.c
/libCEED/common.mk
sphinx/source/releasenotes.rst
/libCEED/examples/ceed/ex1-volume.c
/libCEED/examples/ceed/ex2-surface.c
/libCEED/examples/fluids/Makefile
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/mfem/Makefile
/libCEED/examples/mfem/bp1.cpp
/libCEED/examples/mfem/bp1.hpp
/libCEED/examples/mfem/bp3.cpp
/libCEED/examples/mfem/bp3.hpp
/libCEED/examples/petsc/Makefile
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/Makefile
/libCEED/examples/solids/elasticity.c
/libCEED/examples/solids/elasticity.h
/libCEED/examples/solids/src/matops.c
/libCEED/examples/solids/src/misc.c
/libCEED/examples/solids/src/setuplibceed.c
/libCEED/include/ceed-backend.h
/libCEED/include/ceed-hash.h
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-basis.c
/libCEED/interface/ceed-elemrestriction.c
/libCEED/interface/ceed-fortran.c
/libCEED/interface/ceed-operator.c
/libCEED/interface/ceed-qfunction.c
/libCEED/interface/ceed-qfunctioncontext.c
/libCEED/interface/ceed-tensor.c
/libCEED/interface/ceed-vector.c
/libCEED/interface/ceed.c
/libCEED/python/ceed.py
/libCEED/python/ceed_qfunction.py
/libCEED/python/ceed_qfunctioncontext.py
/libCEED/tests/junit.py
/libCEED/tests/output/t402-qfunction-f.out
/libCEED/tests/output/t402-qfunction.out
/libCEED/tests/python/output/test_402.out
/libCEED/tests/python/test-4-qfunction.py
/libCEED/tests/t002-ceed.c
/libCEED/tests/t215-elemrestriction.c
/libCEED/tests/t401-qfunction-f.f90
/libCEED/tests/t401-qfunction.c
/libCEED/tests/t402-qfunction-f.f90
/libCEED/tests/t402-qfunction.c
/libCEED/tests/tap.sh
91dfd1cd11-Aug-2020 jeremylt <thompson.jeremy.luke@gmail.com>

Doc - update backend diagram


/libCEED/.gitlab-ci.yml
/libCEED/.travis.yml
/libCEED/Makefile
/libCEED/backends/cuda-shared/ceed-cuda-shared-basis.c
/libCEED/backends/cuda/ceed-cuda-qfunction-load.cpp
/libCEED/backends/cuda/ceed-cuda-vector.c
/libCEED/backends/cuda/kernels/cuda-vector.cu
/libCEED/backends/hip/ceed-hip-compile.cpp
/libCEED/backends/hip/ceed-hip-qfunction-load.cpp
/libCEED/backends/hip/ceed-hip-vector.c
/libCEED/backends/hip/kernels/hip-vector.hip.cpp
/libCEED/backends/xsmm/ceed-xsmm-tensor.c
img/libCEEDBackends.png
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/petsc/area.c
/libCEED/examples/petsc/bpssphere.c
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setuparea.h
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/README.rst
/libCEED/examples/solids/elasticity.c
/libCEED/examples/solids/elasticity.h
/libCEED/examples/solids/src/cloptions.c
/libCEED/examples/solids/src/matops.c
/libCEED/examples/solids/src/misc.c
/libCEED/examples/solids/src/setupdm.c
/libCEED/examples/solids/src/setuplibceed.c
/libCEED/gallery/scale/ceed-scale.c
/libCEED/gallery/scale/ceed-scale.h
/libCEED/include/ceed-backend.h
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-basis.c
/libCEED/interface/ceed-elemrestriction.c
/libCEED/interface/ceed-fortran.c
/libCEED/interface/ceed-operator.c
/libCEED/interface/ceed-qfunction.c
/libCEED/interface/ceed-tensor.c
/libCEED/interface/ceed-vector.c
/libCEED/interface/ceed.c
/libCEED/python/ceed_basis.py
/libCEED/python/ceed_operator.py
/libCEED/python/ceed_vector.py
/libCEED/tests/README.md
/libCEED/tests/python/test-1-vector.py
/libCEED/tests/python/test-5-operator.py
/libCEED/tests/t119-vector-f.f90
/libCEED/tests/t119-vector.c
/libCEED/tests/t322-basis.c
/libCEED/tests/t400-qfunction-f.f90
/libCEED/tests/t400-qfunction-f.h
/libCEED/tests/t401-qfunction-f.f90
/libCEED/tests/t401-qfunction-f.h
/libCEED/tests/t402-qfunction-f.f90
/libCEED/tests/t500-operator-f.f90
/libCEED/tests/t500-operator-f.h
/libCEED/tests/t501-operator-f.f90
/libCEED/tests/t501-operator-f.h
/libCEED/tests/t502-operator-f.f90
/libCEED/tests/t502-operator-f.h
/libCEED/tests/t503-operator-f.f90
/libCEED/tests/t504-operator-f.f90
/libCEED/tests/t505-operator-f.f90
/libCEED/tests/t506-operator-f.f90
/libCEED/tests/t510-operator-f.f90
/libCEED/tests/t510-operator-f.h
/libCEED/tests/t511-operator-f.f90
/libCEED/tests/t520-operator-f.f90
/libCEED/tests/t521-operator-f.f90
/libCEED/tests/t522-operator-f.f90
/libCEED/tests/t522-operator-f.h
/libCEED/tests/t523-operator-f.f90
/libCEED/tests/t524-operator-f.f90
/libCEED/tests/t530-operator-f.f90
/libCEED/tests/t530-operator-f.h
/libCEED/tests/t531-operator-f.f90
/libCEED/tests/t531-operator-f.h
/libCEED/tests/t532-operator-f.f90
/libCEED/tests/t532-operator-f.h
/libCEED/tests/t533-operator-f.f90
/libCEED/tests/t534-operator-f.f90
/libCEED/tests/t534-operator-f.h
/libCEED/tests/t535-operator-f.f90
/libCEED/tests/t535-operator-f.h
/libCEED/tests/t536-operator-f.f90
/libCEED/tests/t540-operator-f.f90
/libCEED/tests/t540-operator-f.h
/libCEED/tests/t550-operator-f.f90
/libCEED/tests/t550-operator.c
/libCEED/tests/t551-operator.c
/libCEED/tests/t552-operator-f.f90
/libCEED/tests/t552-operator.c
/libCEED/tests/t553-operator-f.f90
/libCEED/tests/t553-operator.c
/libCEED/tests/tap.sh
26cf1b8227-Jul-2020 valeriabarra <valeriabarra21@gmail.com>

Add SciPy20 Proceeding publication in CITING section and corresponding BiBTex entry


/libCEED/.codecov.yml
/libCEED/.gitlab-ci.yml
/libCEED/.travis.yml
/libCEED/Makefile
/libCEED/README.rst
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator-build.cpp
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-qfunction.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-basis.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-restriction.c
/libCEED/backends/cuda-reg/kernels/cuda-reg-basis.cu
/libCEED/backends/cuda-shared/ceed-cuda-shared-basis.c
/libCEED/backends/cuda/ceed-cuda-operator.c
/libCEED/backends/cuda/ceed-cuda-qfunction.c
/libCEED/backends/cuda/ceed-cuda-restriction.c
/libCEED/backends/cuda/ceed-cuda.h
/libCEED/backends/cuda/kernels/cuda-vector.cu
/libCEED/backends/hip/ceed-hip-operator.c
/libCEED/backends/hip/ceed-hip-qfunction.c
/libCEED/backends/hip/ceed-hip-restriction.c
/libCEED/backends/hip/ceed-hip.h
/libCEED/backends/hip/kernels/hip-vector.hip.cpp
/libCEED/backends/magma/kernels/atomics.cuh
/libCEED/backends/magma/kernels/grad_1d.cu
/libCEED/backends/magma/kernels/grad_device.cuh
/libCEED/backends/magma/kernels/grad_generic.cu
/libCEED/backends/magma/kernels/gradn_2d.cu
/libCEED/backends/magma/kernels/gradn_3d.cu
/libCEED/backends/magma/kernels/gradt_2d.cu
/libCEED/backends/magma/kernels/gradt_3d.cu
/libCEED/backends/magma/kernels/interp_1d.cu
/libCEED/backends/magma/kernels/interp_2d.cu
/libCEED/backends/magma/kernels/interp_3d.cu
/libCEED/backends/magma/kernels/interp_device.cuh
/libCEED/backends/magma/kernels/interp_generic.cu
/libCEED/backends/magma/kernels/magma_common_device.cuh
/libCEED/backends/magma/kernels/magma_devptr.cu
/libCEED/backends/magma/kernels/magma_drestrictApply.cu
/libCEED/backends/magma/kernels/weight_1d.cu
/libCEED/backends/magma/kernels/weight_2d.cu
/libCEED/backends/magma/kernels/weight_3d.cu
/libCEED/backends/magma/kernels/weight_device.cuh
/libCEED/backends/magma/kernels/weight_generic.cu
bib/references.bib
/libCEED/tests/junit.py
/libCEED/tests/python/test-0-ceed.py
b703936523-Jul-2020 nbeams <246972+nbeams@users.noreply.github.com>

update release notes


/libCEED/Makefile
/libCEED/README.rst
/libCEED/backends/cuda/ceed-cuda-vector.c
/libCEED/backends/cuda/cuda-vector.cu
/libCEED/backends/hip/ceed-hip-basis.c
/libCEED/backends/hip/ceed-hip-compile.cpp
/libCEED/backends/hip/ceed-hip-compile.h
/libCEED/backends/hip/ceed-hip-operator.c
/libCEED/backends/hip/ceed-hip-qfunction-load.cpp
/libCEED/backends/hip/ceed-hip-qfunction-load.h
/libCEED/backends/hip/ceed-hip-qfunction.c
/libCEED/backends/hip/ceed-hip-restriction.c
/libCEED/backends/hip/ceed-hip-vector.c
/libCEED/backends/hip/ceed-hip.c
/libCEED/backends/hip/ceed-hip.h
/libCEED/backends/hip/hip-vector.hip.cpp
sphinx/source/releasenotes.rst
/libCEED/examples/solids/elasticity.c
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-fortran.c
/libCEED/interface/ceed.c
/libCEED/python/build_ceed_cffi.py
/libCEED/python/ceed.py
/libCEED/python/ceed_basis.py
/libCEED/python/ceed_elemrestriction.py
/libCEED/python/ceed_operator.py
/libCEED/python/ceed_qfunction.py
/libCEED/python/ceed_vector.py
/libCEED/tests/python/test-0-ceed.py
/libCEED/tests/t000-ceed-f.f90
/libCEED/tests/t000-ceed.c
/libCEED/tests/t005-ceed.c
c8d5b03c17-Jul-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Doc - document QFunction source requirements for single source


/libCEED/.codecov.yml
/libCEED/Makefile
/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/cuda/ceed-cuda-operator.c
/libCEED/backends/cuda/ceed-cuda-vector.c
/libCEED/backends/cuda/ceed-cuda.c
/libCEED/backends/cuda/ceed-cuda.h
/libCEED/backends/opt/ceed-opt-operator.c
/libCEED/backends/ref/ceed-ref-operator.c
sphinx/source/libCEEDapi.rst
/libCEED/examples/solids/qfunctions/hyperFS.h
/libCEED/examples/solids/qfunctions/hyperSS.h
/libCEED/interface/ceed-qfunction.c
/libCEED/python/ceed_operator.py
/libCEED/tests/python/test-5-operator.py
/libCEED/tests/t520-operator.c
/libCEED/tests/t521-operator.c
/libCEED/tests/t524-operator.c
73b14a4608-Jul-2020 Jed Brown <jed@jedbrown.org>

Rename master branch to main

Also revise master/slave terminology in description of non-conforming meshes.


/libCEED/CONTRIBUTING.md
/libCEED/README.rst
/libCEED/azure-pipelines.yml
sphinx/source/libCEEDapi.rst
sphinx/source/releasenotes.rst
3150adae07-Jul-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Doc - add release note for CeedVectorTakeArray


sphinx/source/releasenotes.rst
/libCEED/examples/fluids/advection.h
/libCEED/examples/fluids/advection2d.h
/libCEED/examples/fluids/densitycurrent.h
/libCEED/examples/fluids/index.rst
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/fluids/setup-boundary.h
ebddc5d418-Jun-2020 Leila Ghaffari <Leila.Ghaffari@colorado.edu>

doc/NS: update

update doc

Fluids - fix doc

Fluids - update doc

doc: Fluids - added weak form boundary integrals for in/outflow BCs

doc: Fluids - specified in/outflow surfaces in the boundary in

doc/NS: update

update doc

Fluids - fix doc

Fluids - update doc

doc: Fluids - added weak form boundary integrals for in/outflow BCs

doc: Fluids - specified in/outflow surfaces in the boundary integrals

fix doc

show more ...


sphinx/source/references.bib
/libCEED/examples/fluids/README.md
/libCEED/examples/fluids/advection.h
/libCEED/examples/fluids/advection2d.h
/libCEED/examples/fluids/index.rst
/libCEED/examples/fluids/navierstokes.c
81f92cf011-Jun-2020 Leila Ghaffari <Leila.Ghaffari@colorado.edu>

examples/fluids: updated command line options, doc, README and, comments

examples/fluids: updated command line options and README

doc updated

examples/fluids: updated README & ~_left -> ~_wi

examples/fluids: updated command line options, doc, README and, comments

examples/fluids: updated command line options and README

doc updated

examples/fluids: updated README & ~_left -> ~_wind & ~_right -> ~ & comments

update doc

examples/fluids/advection(2d).h: update comments

examples/fluids: fix doc

show more ...


/libCEED/.travis.yml
/libCEED/CODE_OF_CONDUCT.md
/libCEED/Makefile
/libCEED/README.rst
/libCEED/backends/avx/ceed-avx-blocked.c
/libCEED/backends/avx/ceed-avx-serial.c
/libCEED/backends/blocked/ceed-blocked.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator-build.cpp
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-qfunction.c
/libCEED/backends/cuda-gen/ceed-cuda-gen.c
/libCEED/backends/cuda-gen/ceed-cuda-gen.h
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4dc9716017-Jun-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

doc - update release notes for LinearAssemble* changes


/libCEED/backends/ref/ceed-ref-operator.c
sphinx/source/releasenotes.rst
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/libCEED/examples/solids/src/matops.c
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311baa0615-Jun-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

doc - update release notes


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sphinx/source/releasenotes.rst
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2db7ab3215-Jun-2020 Jeremy L Thompson <25011573+jeremylt@users.noreply.github.com>

Doc - fix L-vector indexing in dev docs (#557)

* Doc - fix L-vector indexing in dev docs

* Doc - fix same issue in ElemRestriction doc


sphinx/source/libCEEDdev.rst
/libCEED/interface/ceed-elemrestriction.c
95e93d3415-Jun-2020 Jeremy L Thompson <25011573+jeremylt@users.noreply.github.com>

Improve Developer Documentation (#556)

* doc - document l/e/q vector layouts and object inheritance

* doc - clean up some referencing

* doc - fix some reference errors

* doc - fix enumerati

Improve Developer Documentation (#556)

* doc - document l/e/q vector layouts and object inheritance

* doc - clean up some referencing

* doc - fix some reference errors

* doc - fix enumeration in inheritance list

* doc - include note for dissimilar E/Q layouts

show more ...


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/libCEED/tests/tap.sh
be8c6e4419-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Docs - pin python package markdown at 3.2.1


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61dafefd16-Apr-2020 Jed Brown <jed@jedbrown.org>

doc: activate hoverxref after RTD update


/libCEED/Makefile
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/libCEED/backends/cuda-gen/ceed-cuda-gen-qfunction.c
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sphinx/requirements.txt
sphinx/source/conf.py
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/src/setuplibceed.c
b6cb82e404-May-2020 valeriabarra <valeriabarra21@gmail.com>

Move CITING info to top-level README


/libCEED/CONTRIBUTING.md
/libCEED/README.rst
sphinx/source/index.rst
/libCEED/examples/solids/src/misc.c
/libCEED/examples/solids/src/setuplibceed.c
b63cf38e01-May-2020 jeremylt <jeremy.thompson@colorado.edu>

Doc - drop unused module page


sphinx/source/index.rst
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/libCEED/interface/ceed-operator.c
/libCEED/interface/ceed-qfunction.c
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/libCEED/interface/ceed.c
fc5b9ac601-May-2020 Jed Brown <jed@jedbrown.org>

doc: remove obsolete references to CeedInterlaceMode


sphinx/source/api/CeedElemRestriction.rst
/libCEED/include/ceedf.h
fe7bf0e401-May-2020 Jed Brown <jed@jedbrown.org>

doc: switch to Breathe 4.17 and C domain


/libCEED/Doxyfile
/libCEED/Makefile
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sphinx/requirements.txt
sphinx/source/conf.py
/libCEED/examples/nek/bps/bps.h
/libCEED/examples/petsc/qfunctions/bps/common.h
/libCEED/include/ceed-backend.h
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-basis.c
/libCEED/interface/ceed-elemrestriction.c
/libCEED/interface/ceed.c
/libCEED/tests/junit.py
/libCEED/tests/t214-elemrestriction.c
/libCEED/tests/t215-elemrestriction.c
/libCEED/tests/tap.sh
014ec18d22-Apr-2020 jeremylt <jeremy.thompson@colorado.edu>

Doc - update master branch notes


/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator-build.cpp
/libCEED/backends/cuda-reg/ceed-cuda-reg-restriction.c
/libCEED/backends/cuda-reg/ceed-cuda-reg.h
/libCEED/backends/cuda/ceed-cuda-restriction.c
/libCEED/backends/cuda/ceed-cuda.c
/libCEED/backends/cuda/ceed-cuda.h
/libCEED/backends/magma/ceed-magma-restriction.c
/libCEED/backends/magma/ceed-magma.h
/libCEED/backends/magma/magma_drestrictApply.cu
/libCEED/backends/occa/ceed-occa-restrict.c
/libCEED/backends/occa/ceed-occa-restrict.okl
/libCEED/backends/opt/ceed-opt-operator.c
/libCEED/backends/ref/ceed-ref-operator.c
/libCEED/backends/ref/ceed-ref-restriction.c
/libCEED/backends/ref/ceed-ref.h
sphinx/source/releasenotes.rst
/libCEED/examples/ceed/ex1-volume.c
/libCEED/examples/ceed/ex2-surface.c
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/mfem/bp1.hpp
/libCEED/examples/mfem/bp3.hpp
/libCEED/examples/nek/bps/bps.usr
/libCEED/examples/petsc/area.c
/libCEED/examples/petsc/bpsraw.c
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/README.rst
/libCEED/examples/solids/elasticity.c
/libCEED/examples/solids/elasticity.h
/libCEED/examples/solids/src/setuplibceed.c
/libCEED/examples/tutorials/tutorial-2-elemrestriction.ipynb
/libCEED/examples/tutorials/tutorial-5-operator.ipynb
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-elemrestriction.c
/libCEED/interface/ceed-fortran.c
/libCEED/interface/ceed-types.c
/libCEED/python/__init__.py
/libCEED/python/ceed.py
/libCEED/python/ceed_constants.py
/libCEED/python/ceed_elemrestriction.py
/libCEED/tests/output/t210-elemrestriction-f.out
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/libCEED/tests/python/output/test_210.out
/libCEED/tests/python/test-2-elemrestriction.py
/libCEED/tests/python/test-5-operator.py
/libCEED/tests/t200-elemrestriction-f.f90
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/libCEED/tests/t524-operator-f.f90
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/libCEED/tests/t530-operator-f.f90
/libCEED/tests/t530-operator.c
/libCEED/tests/t531-operator-f.f90
/libCEED/tests/t531-operator.c
/libCEED/tests/t532-operator-f.f90
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/libCEED/tests/t534-operator-f.f90
/libCEED/tests/t534-operator.c
/libCEED/tests/t535-operator-f.f90
/libCEED/tests/t535-operator.c
/libCEED/tests/t536-operator-f.f90
/libCEED/tests/t536-operator.c
/libCEED/tests/t540-operator-f.f90
/libCEED/tests/t540-operator.c
/libCEED/tests/tap.sh
175e179d16-Apr-2020 jeremylt <jeremy.thompson@colorado.edu>

make style


/libCEED/.travis.yml
sphinx/source/conf.py
/libCEED/examples/fluids/README.md
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/solids/README.rst
/libCEED/examples/solids/elasticity.c
/libCEED/examples/solids/elasticity.h
/libCEED/examples/solids/index.rst
/libCEED/examples/solids/qfunctions/constantForce.h
/libCEED/examples/solids/qfunctions/hyperFS.h
/libCEED/examples/solids/qfunctions/hyperSS.h
/libCEED/examples/solids/qfunctions/linElas.h
/libCEED/examples/solids/qfunctions/manufacturedForce.h
/libCEED/examples/solids/src/boundary.c
/libCEED/examples/solids/src/cloptions.c
/libCEED/examples/solids/src/matops.c
/libCEED/examples/solids/src/setupdm.c
/libCEED/examples/solids/src/setuplibceed.c
423d854d13-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

Docs: add cubed-sphere image in examples/petsc section


/libCEED/README.rst
img/CubedSphere.svg
/libCEED/examples/ceed/ex1-volume.h
/libCEED/examples/ceed/ex2-surface.h
/libCEED/examples/ceed/index.rst
/libCEED/examples/fluids/advection.h
/libCEED/examples/fluids/advection2d.h
/libCEED/examples/fluids/common.h
/libCEED/examples/fluids/densitycurrent.h
/libCEED/examples/mfem/bp1.h
/libCEED/examples/mfem/bp3.h
/libCEED/examples/nek/bps/bps.h
/libCEED/examples/petsc/index.rst
/libCEED/examples/petsc/qfunctions/area/areacube.h
/libCEED/examples/petsc/qfunctions/area/areasphere.h
/libCEED/examples/petsc/qfunctions/bps/bp1.h
/libCEED/examples/petsc/qfunctions/bps/bp1sphere.h
/libCEED/examples/petsc/qfunctions/bps/bp2.h
/libCEED/examples/petsc/qfunctions/bps/bp2sphere.h
/libCEED/examples/petsc/qfunctions/bps/bp3.h
/libCEED/examples/petsc/qfunctions/bps/bp3sphere.h
/libCEED/examples/petsc/qfunctions/bps/bp4.h
/libCEED/examples/petsc/qfunctions/bps/bp4sphere.h
/libCEED/examples/petsc/qfunctions/bps/common.h
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/qfunctions/common.h
/libCEED/examples/solids/qfunctions/constantForce.h
/libCEED/examples/solids/qfunctions/hyperFS.h
/libCEED/examples/solids/qfunctions/hyperSS.h
/libCEED/examples/solids/qfunctions/linElas.h
/libCEED/examples/solids/qfunctions/manufacturedForce.h
/libCEED/examples/solids/qfunctions/manufacturedTrue.h
/libCEED/examples/tutorials/img/QFunctionSketch.svg
/libCEED/examples/tutorials/tutorial-0-ceed.ipynb
/libCEED/examples/tutorials/tutorial-6-shell.ipynb
/libCEED/gallery/ceed-gallerytemplate.h
/libCEED/gallery/identity/ceed-identity.h
/libCEED/gallery/mass1d/ceed-mass1dbuild.h
/libCEED/gallery/mass1d/ceed-massapply.h
/libCEED/gallery/mass2d/ceed-mass2dbuild.h
/libCEED/gallery/mass3d/ceed-mass3dbuild.h
/libCEED/gallery/poisson1d/ceed-poisson1dapply.h
/libCEED/gallery/poisson1d/ceed-poisson1dbuild.h
/libCEED/gallery/poisson2d/ceed-poisson2dapply.h
/libCEED/gallery/poisson3d/ceed-poisson3dapply.h
/libCEED/gallery/poisson3d/ceed-poisson3dbuild.h
/libCEED/python/build_ceed_cffi.py
/libCEED/python/ceed_qfunction.py

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