Merge pull request #1559 from CEED/jrwrigh/fix_memory_leaks

fix(fluids): Fix primary PETSc memory leak, others

fix(fluids): Fix primary PETSc memory leak, others

All the memory leaks reported in regression tests via `-malloc_dump`
are now related to the boundary conditions and their handling of
QFunctionCont

fix(fluids): Fix primary PETSc memory leak, others

All the memory leaks reported in regression tests via `-malloc_dump`
are now related to the boundary conditions and their handling of
QFunctionContexts, which is a much more difficult problem and will be
addressed later.

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Merge pull request #1537 from CEED/jeremy/pragma-once

Use #pragma once for non-JiT headers

minor - update copyright headers

fluids: enable reading checkpoint files as i32 or i64 (#1520)

* fluids: enable reading checkpoint files as i32 or i64

Depends on https://gitlab.com/petsc/petsc/-/merge_requests/7377

* Apply su

fluids: enable reading checkpoint files as i32 or i64 (#1520)

* fluids: enable reading checkpoint files as i32 or i64

Depends on https://gitlab.com/petsc/petsc/-/merge_requests/7377

* Apply suggestions from code review

Co-authored-by: James Wright <james@jameswright.xyz>

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Co-authored-by: James Wright <james@jameswright.xyz>

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Merge pull request #1517 from CEED/jrwrigh/ratel_sync

fluids: Sync with Ratel changes

fluids: Sync with Ratel, get ceed-utils.h

Merge pull request #1510 from CEED/jrwrigh/fluids_matceed

fluids: Add MatCeed

fluids: Add KSPSetFromOptions_WithMatCeed

Merge pull request #1494 from CEED/jrwrigh/log_filter

Fluids: Add LogEvent for Differential Filter and Velocity Gradient Projection

fluids: Add LogEvent for VeloGradProj and DiffFilter

Merge balin/smartsim branch into main with timers for SmartRedis API calls (#1480)


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Co-authored-by: James Wright <james@jameswright.xyz>
Co-authored-by: Riccardo Balin <balin@aurora-u

Merge balin/smartsim branch into main with timers for SmartRedis API calls (#1480)


---------

Co-authored-by: James Wright <james@jameswright.xyz>
Co-authored-by: Riccardo Balin <balin@aurora-uan-0012.hostmgmt.cm.aurora.alcf.anl.gov>

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Merge pull request #1479 from CEED/jrwrigh/fix_mat_reporting

fluids: Report both amat and pmat types

fluids: Report both amat and pmat types

Merge pull request #1259 from CEED/jrwrigh/fluids-cleanup

fluids: Misc cleanup

fluids: Misc changes to functions

fluids: Rename files with *_NS suffix

fluids: Correct PetscFunction{Return,BeginUser} placement

- Respect the PETSc standard for style (https://petsc.org/release/developers/style/#coding-conventions-and-style)

fluids: Make function names in consistent format

- Mainly remove `_` and acronymns with more than 2 letters should
respect CamelCase (ie. `StgFunction` not `STGFunction`)

Merge pull request #1275 from CEED/jrwrigh/fluidsCeedCall

fluids: Add PetscCallCeed to capture ceed errors with Petsc

fluids: Add PetscCallCeed

fluids: Add user argument to problem print functions

Merge pull request #1257 from CEED/jrwrigh/remove_l2_proj_func

fluids: Remove ComputeL2Projection function

Merge pull request #1260 from CEED/jrwrigh/partition-serial

fluids: Don't show partition stats for serial jobs

fluids: Remove ComputeL2Projection function

- It's superseded by using `NodalProjectionData` + `ApplyCeedOperator*`
+ `KSPSolve`