style - rename CeedOperatorContext functions for consistency

Merge pull request #1147 from CEED/jrwrigh/generic_l2_projection

fluids: Add generic L2 projection function

fluids: Add ComputeL2Projection function

fluids: Add VecP2C, VecC2P, and friends

Merge pull request #1135 from CEED/jrwrigh/spanwise_stats

fluids: Add turb spanstats test, change test option

- `-test` changed to `-test_type` enum to test different outputs

fluids: Change turb_spanstats CL option names

- Options controlling the actual TSMonitor are under
`ts_monitor_turbulence_spanstats_*`
- `stats_enable` removed in favor of
`ts_monitor_turbulence

fluids: Change turb_spanstats CL option names

- Options controlling the actual TSMonitor are under
`ts_monitor_turbulence_spanstats_*`
- `stats_enable` removed in favor of
`ts_monitor_turbulence_spanstats_viewer` being the statistics switch
- Related objects excluding the viewer (such as the dm and ksp) get the
prefix `turbulence_spanstats`
- Change the `stats_test` related functions and variables to use the
`mms` nomenclature, since they're method of manufactured solutions.

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fluids: Mass QF for different number of components

- In order to avoid "Function defined, but not used" warnings, the
ReturnMassQFunction is used to return the correctly sized mass QF

Merge pull request #1134 from CEED/jed/fluids-ts-reason-no-error

fluids: report TS converged reason and exit cleanly

examples/fluids TS: report converged/diverged reason with clean exit

The final state does not get written by the monitor with the default of
-ts_error_if_step_fails 1. Now we exit cleanly regardless

examples/fluids TS: report converged/diverged reason with clean exit

The final state does not get written by the monitor with the default of
-ts_error_if_step_fails 1. Now we exit cleanly regardless of reason,
ensuring that the final state checkpoint and monitor has been called.

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Merge pull request #1131 from CEED/jed/checkpoint-interval

fluids: checkpoint interval

examples/fluids: write step and time to single binary checkpoint file

The -continue and -continue_time_filename arguments can be skipped when
reading new-style files, which include the step number.

examples/fluids: write step and time to single binary checkpoint file

The -continue and -continue_time_filename arguments can be skipped when
reading new-style files, which include the step number. When reading
legacy files, all three are necessary.

This deprecates the time file.

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Switch to clang-format (#1051)

* style - switch to clang-format

* ci - use newer libxsmm

* action - update format action

* format - consistent use of {} for multi-line if/for

* make - re

Switch to clang-format (#1051)

* style - switch to clang-format

* ci - use newer libxsmm

* action - update format action

* format - consistent use of {} for multi-line if/for

* make - remove stray newline

* make - simpler 'make format' target

* ci - use newer libxsmm

* doc - minor release note claification

* minor - minor fix

* minor - minor fix

* minor - minor fix

* minor - minor fix

* make format

* format - less aggressive alignment rules

* tidy - check for argument name mismatches

* fix newline

* format - mirror Ratel update to .clang-format

* fix merge error

* fix merge conflict

* fix merge error

* drop style in .phony list

* Update .clang-format

Co-authored-by: Jed Brown <jed@jedbrown.org>

* apply updated format

Co-authored-by: Jed Brown <jed@jedbrown.org>

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fluids: Make simulation continuation more flexible (#1086)

* fluids: Add options to continue from specific file

* fluids: Option to write out bins with step number

* doc(fluids): Document outp

fluids: Make simulation continuation more flexible (#1086)

* fluids: Add options to continue from specific file

* fluids: Option to write out bins with step number

* doc(fluids): Document output/continuation flags

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Merge pull request #1015 from CEED/jrwrigh/fluids_bcinsert_mask

fluids: Fix post-processing in DMPlexInsertBoundaryValues_NS

fluids: Fix post-processing in DMPlexInsertBoundaryValues_NS

Merge branch 'main' into jeremy/assembly-fix

Merge branch 'main' into jeremy/memcheck-qf-ctx

Merge pull request #993 from CEED/jeremy/fluids-bcs

Fluids BCs performance updates

fluids - only VecZero in the BCs if using SetBCsFromICs

Merge pull request #958 from CEED/jed/fluids-cleaning

examples/fluids cleaning

examples/fluids: make setup contexts independent

These are now private to each example and can be developed independently.

examples/fluids: consolidate two-step setup

Contexts are created in one place now and we have removed duplicate
struct definitions for physics.

Merge pull request #943 from CEED/jed/petsc-format-string

examples: use PetscInt_FMT instead of %D

examples: use PetscInt_FMT instead of %D

This fixes many warnings now that PETSc uses printf format string
attribute checkers.