Merge pull request #1308 from CEED/jrwrigh/setup_fem

Fluids: Add DMSetupByOrder helper functions

fluids: Add DMSetupByOrder_* helper function

Merge pull request #1275 from CEED/jrwrigh/fluidsCeedCall

fluids: Add PetscCallCeed to capture ceed errors with Petsc

fluids: Add PetscCallCeed

PetscFE determines basis for examples/fluids/navierstokes (#1264)

* breaking lots of DL stuff to test PetscFE

* fixed missing header

* fluids: Remove unused `Involute` function

* fluids: Se

PetscFE determines basis for examples/fluids/navierstokes (#1264)

* breaking lots of DL stuff to test PetscFE

* fixed missing header

* fluids: Remove unused `Involute` function

* fluids: Set quadrature points for PetscFE

* fluids: Fix GetRestrictionForDomain, Use CreateBasisFromPlex

* fluids: Remove Q_sur arg from SetupStrongBC_Ceed

* fluids: Remove extra SetClosurePermutationTensor

* fluids: Correct quadrature order to auxillary DMs

- Should factor in q_extra

* fluids: Fix parent Restriction creation for spanstats

* fluids: Correct qdata creation for strong bcs

* fluids: Set tensor closer only for tensor-product elements

Co-authored-by: Jeremy L Thompson <jeremy@jeremylt.org>

* fluids: Make shocktube test less brittle

- Small, insignificant changes to the coordinate locations make a
dramatic difference to the initial condition
- For the test case, there is a node right at the midpoint of the
domain. Adding the epsilon fudge factor makes the if statement more
stable

* fluids: Fix SGS test

- Change the test so that it passes on all hardware. It's a very
sentitive test and the changes to the basis creation changed the
initial conditions *just* enough to make the test not happy. Should
really try and make this more robust at some point...

* fluids: Address misc PR comments

* fluids: Remove quad_mode arg from CreateBasisFromPlex

---------

Co-authored-by: James Wright <james@jameswright.xyz>
Co-authored-by: Jeremy L Thompson <jeremy@jeremylt.org>

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Merge pull request #1234 from CEED/jrwrigh/fluids_64int

fluids: Compatability for PETSc w/ 64bit ints

fluids: Compatability for PETSc w/ 64bit ints

Merge pull request #1237 from CEED/jrwrigh/petsc-success

examples: Use PETSC_SUCCESS in PetscFunctionReturn

examples: Use PetscFunctionReturn in PETSC_SUCCESS

Merge pull request #1189 from CEED/jrwrigh/differential_filter

fluids: Add differential filtering capability

fluids: Specify dm_field in GetRestrictionForDomain

Merge pull request #1185 from CEED/jrwrigh/fluids-cleanup

fluids: Move to local Vec storage and petsc-ops

fluids: Move setup function calls to better locations

- Move libCEED operator setup functions to SetupLibceed
- Rename turbulence statistics functions to match naming convention

fluids: Convert turb_spanstats to use petsc-ops

Merge pull request #1149 from CEED/jrwrigh/newtonian_ddsgs

fluids: Data-driven SGS modeling

fluids: Refactor matops -> petsc_ops

fluids: Add VecCopyP2C function

IWYU fixes (#1182)

* iwyu - include fixes

* iwyu - silence some iwyu output

* minor - clearer macro names

* iwyu - fix suggestion of "ceed/ceed.h" externally

* iwyu - lighter petsc heade

IWYU fixes (#1182)

* iwyu - include fixes

* iwyu - silence some iwyu output

* minor - clearer macro names

* iwyu - fix suggestion of "ceed/ceed.h" externally

* iwyu - lighter petsc headers

* iwyu - ceed/ceed.h -> ceed.h

* iwyu - cuda/hip include fixes

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Merge pull request #1174 from CEED/jeremy/operator-context

CeedOperatorContext* -> CeedOperator*Context*

style - rename CeedOperatorContext functions for consistency

Merge pull request #1147 from CEED/jrwrigh/generic_l2_projection

fluids: Add generic L2 projection function

fluids: Remove unused spanstats lumped mass matrix

fluids: Add VecP2C, VecC2P, and friends

fluids: Separate DMs for Matop input and output

fluids: Misc cleanup

- Change/remove comments
- Remove superfluous includes