Merge pull request #1912 from CEED/jeremy/copyright

minor - update copyright to 2026

minor - update copyright to 2026

Merge pull request #1837 from CEED/jed/ci-noether-cuda-12.9

* ci: noether CUDA_DIR=/usr/local/cuda-12.9
* makefiles: update defaults from c99 to c11
* tidy: -clang-analyzer-security.insecureAPI.Depr

Merge pull request #1837 from CEED/jed/ci-noether-cuda-12.9

* ci: noether CUDA_DIR=/usr/local/cuda-12.9
* makefiles: update defaults from c99 to c11
* tidy: -clang-analyzer-security.insecureAPI.DeprecatedOrUnsafeBufferHandling
* ci: noether rocm-6.3

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makefiles: update defaults from c99 to c11

cuda-12.9 contains anonymous unions, which are not in c99. But c11 is
widely supported these days so it seems fair to update.

One nit is that c11 does not

makefiles: update defaults from c99 to c11

cuda-12.9 contains anonymous unions, which are not in c99. But c11 is
widely supported these days so it seems fair to update.

One nit is that c11 does not require VLA, and libCEED uses VLA-pointers
internally for some purposes.

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Merge pull request #1786 from CEED/jeremy/copy-headers

minor - upate copyright to 2025

minor - upate copyright to 2025

Merge pull request #1537 from CEED/jeremy/pragma-once

Use #pragma once for non-JiT headers

minor - update copyright headers

Merge pull request #1414 from CEED/zach/bps-swarm

Add support for running BPs with integration at particle points

Add BPs with integration at arbitrary points

DMSwarm Example with Interpolation and Projection (#1284)

* petsc - initial DMSwarm example

* swarm - links and runs

* swarm - fixed default box dims

* swarm - clearer error messages

* s

DMSwarm Example with Interpolation and Projection (#1284)

* petsc - initial DMSwarm example

* swarm - links and runs

* swarm - fixed default box dims

* swarm - clearer error messages

* swarm - clearer background mesh setup requirements

* swarm - Tensor bad :(

* Fix inequality direction for verification

* swarm - add viewing command

* swarm - DMSwarmPICField_coor

* swarm - DMSwarmGetCellDM

* swarm - dm_plex_hash_location true

* fix coordinate ordering

* "working" two-way projection

* libceed mostly correct, off by a permutation or something

* add tolerance parameter and make test succeed

* Use DMProjectFunction to support high-order bases

* minor clarity change

* prefer PetscPrintf over printf

* consistency

* minor - make uniform vs sin distributed points cl option

* fix VLA declaration

* minor reorganizing

* swarm value check in separate fn

* minor reorg and rename

* style

* separate interpolate logic into its own fns

* consistency

* fix error message

* woops, use field name arg

* improve indexing, switch to uniform for test

* fix multiple comp

* drop unused function

* draft documentation

* style

* Update PETSc style documentation

Co-authored-by: Zach Atkins <zach.atkins@colorado.edu>

* Update examples/petsc/dmswarm.c

* add create/destroy for ceed ctx object

* use libCEED rstr

* add P2C/C2P utils

* minor simplifications

* add projection swarm to mesh

* minor

* update gitignore

* add gauss point locations, lumped comparison

* simplify uniform/gauss coords logic

* fix segfault

* drop comparison - can replicate with CL options

* add polynomial target option

* minor tidying

* revert accidental change

* lumped test

* update tolerance option description

Co-authored-by: Zach Atkins <zach.atkins@colorado.edu>

* add points_per_cell option

* Fix siliness by Jeremy

Co-authored-by: Zach Atkins <zach.atkins@colorado.edu>

* fix scoping and logic

* style

* discontinuous sphere target

* add cellwise random swarm

---------

Co-authored-by: Zach Atkins <zach.atkins@colorado.edu>

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Merge pull request #858 from CEED/jeremy/dump-copy-stuff

Strip redundant/outdated license info duplication

minor - update copyright headers

Merge pull request #770 from CEED/jed/cuda-ci

gitlab-ci: add lv-cuda

make: consolidate examples/petsc utilities into library to avoid races

Parallel recursive make races itself building the utilities when
creating multiple executables, so consolidate so invocations n

make: consolidate examples/petsc utilities into library to avoid races

Parallel recursive make races itself building the utilities when
creating multiple executables, so consolidate so invocations never build
overlapping targets.

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petsc - fix deps for parallel build of petsc example

Merge pull request #764 from CEED/jeremy/ci-exit

junit - set CEED_ERROR_HANDLER to exit

petsc - clean up some header inclusions

Merge pull request #726 from CEED/jeremy/petsc-ex-build

Refactor petsc examples to reduce redundant code

petsc - refactor examples to reduce redundant code

QFunction Context Data Object (#596)

* Ctx - create context object for QFunction context data

* Context - rename UserContext -> QFunctionContext

* Ctx - add lcov markers

* Ctx - fix leak in

QFunction Context Data Object (#596)

* Ctx - create context object for QFunction context data

* Context - rename UserContext -> QFunctionContext

* Ctx - add lcov markers

* Ctx - fix leak in identity QFunctions

* Hip/Cuda - rename sync functions for vector/context

* Tests - lcov marker update

* QFunction - drop unused function

* Python - fix copy-paste errors

* Ctx - update notes for Fortran usage

* Fortran - drop unneeded cast

Co-authored-by: Jed Brown <jed@jedbrown.org>

* Interface - use void* for SetData interfaces

* Make - use call quiet for NVCC

* Interface - use void* for GetData interfaces

* Make - add quiet call option for examples

* Makefile - create common makefile to reduce duplication/complexity in example makefiles

Co-authored-by: Jed Brown <jed@jedbrown.org>

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Merge pull request #491 from CEED/jed/intel-compiler

Jed/intel compiler

examples/solids: cannot pass CPPFLAGS to linker (broken with cray/intel)

Drop define of __DIR__, which is unused in PETSc and libCEED.

make: support CEED_LDFLAGS for things like -dynamic on Cray

PETSc BPs on the cubed-sphere (#463)

* Add setupsphere.c and bpssphere.c and improve doc of area problems

* Improve doc of area.c

* Areasphere: improve doc

* Update Makefile for bpssphere

PETSc BPs on the cubed-sphere (#463)

* Add setupsphere.c and bpssphere.c and improve doc of area problems

* Improve doc of area.c

* Areasphere: improve doc

* Update Makefile for bpssphere

* Use Sqr define in area/areasphere.okl

* BPs on the sphere: Add BP1 and BP2

* Update ./gitignore for bpssphere

* BPs on the sphere: Use MatSetNullSpace for Laplace operator

* BPs on the sphere: Add BP3

* Style fix in navierstokes.c

* ceed/ex2-surface: remove ununsed M_PI_2 define

* BP3: Use different rhs and true_soln functions

* bpssphere: normalize quadrature point coordinates to sphere

* Remove extra DMSetFromOptions() call in SetupDMByDegree function

* Add bp3sphere.okl

* Update bpssphere problems after interface change in PR #447

* Make style

* Update TESTARGS

* Fix make style change

* Slightly increase the tolerance for test_mode

* Update bp2sphere.h and bp2sphere.okl with asymmetric formulation consistent with PR #464

* Add BP4

* Enable BP5/BP6

* Add bp4sphere.okl and style

* Update after Strided Restrictions and latest updates in PETSc

* change booleans to PetscBooleans

Not to be pedantic, but this change was suggested by my IDE ^_^

* examples: s,pysical,physical, and small comment

* Simplify unnecessary bidimensional matrices

Co-authored-by: jeremylt <jeremy.thompson@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>

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